Query 040481
Match_columns 222
No_of_seqs 121 out of 1659
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8.5E-42 2.9E-46 262.9 19.3 171 10-180 7-177 (216)
2 3cpj_B GTP-binding protein YPT 100.0 4.1E-36 1.4E-40 232.4 20.1 174 11-184 8-181 (223)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 7.4E-35 2.5E-39 222.5 23.7 172 13-184 5-176 (206)
4 2bov_A RAla, RAS-related prote 100.0 2.8E-34 9.5E-39 218.9 23.7 173 10-183 8-181 (206)
5 2ew1_A RAS-related protein RAB 100.0 8.6E-34 3E-38 216.2 22.8 171 12-182 22-192 (201)
6 2a5j_A RAS-related protein RAB 100.0 1.6E-33 5.4E-38 212.8 23.7 174 9-182 14-187 (191)
7 3tkl_A RAS-related protein RAB 100.0 2.3E-33 7.9E-38 212.2 24.5 171 12-182 12-182 (196)
8 1zbd_A Rabphilin-3A; G protein 100.0 2.4E-33 8.2E-38 213.5 24.3 174 12-185 4-177 (203)
9 2fu5_C RAS-related protein RAB 100.0 3E-34 1E-38 214.9 18.9 172 13-184 5-176 (183)
10 2oil_A CATX-8, RAS-related pro 100.0 2.7E-33 9.4E-38 211.6 24.1 172 11-182 20-191 (193)
11 2bme_A RAB4A, RAS-related prot 100.0 2.4E-33 8.1E-38 210.5 23.3 171 13-183 7-177 (186)
12 1z0f_A RAB14, member RAS oncog 100.0 2E-33 6.7E-38 209.3 22.5 168 12-179 11-178 (179)
13 2hup_A RAS-related protein RAB 100.0 1.5E-33 5.2E-38 214.7 22.1 171 11-181 24-195 (201)
14 3tw8_B RAS-related protein RAB 100.0 2.3E-33 7.7E-38 209.3 22.5 173 12-185 5-177 (181)
15 2gf9_A RAS-related protein RAB 100.0 3.8E-33 1.3E-37 210.2 23.5 170 12-181 18-187 (189)
16 3kkq_A RAS-related protein M-R 100.0 2.7E-33 9.2E-38 209.7 22.2 171 8-179 10-182 (183)
17 2efe_B Small GTP-binding prote 100.0 3.6E-33 1.2E-37 208.5 22.5 169 12-180 8-176 (181)
18 1r2q_A RAS-related protein RAB 100.0 5.2E-33 1.8E-37 205.2 22.8 165 13-177 3-167 (170)
19 2o52_A RAS-related protein RAB 100.0 2.7E-33 9.3E-38 213.1 21.4 174 10-183 19-192 (200)
20 1vg8_A RAS-related protein RAB 100.0 1.4E-33 4.8E-38 215.2 19.4 170 13-183 5-179 (207)
21 1z08_A RAS-related protein RAB 100.0 1.7E-33 6E-38 208.0 19.2 167 13-179 3-169 (170)
22 2g6b_A RAS-related protein RAB 100.0 5.7E-33 2E-37 207.2 22.2 170 11-180 5-175 (180)
23 3dz8_A RAS-related protein RAB 100.0 2.6E-34 8.7E-39 217.1 14.9 172 10-181 17-188 (191)
24 1z0j_A RAB-22, RAS-related pro 100.0 1.3E-32 4.4E-37 203.2 23.6 165 13-177 3-167 (170)
25 2il1_A RAB12; G-protein, GDP, 100.0 3.1E-33 1.1E-37 211.4 20.5 170 11-180 21-191 (192)
26 2fn4_A P23, RAS-related protei 100.0 8.8E-33 3E-37 206.1 22.4 170 12-182 5-175 (181)
27 1ek0_A Protein (GTP-binding pr 100.0 9.1E-33 3.1E-37 203.9 21.9 163 15-177 2-167 (170)
28 3bc1_A RAS-related protein RAB 100.0 1.4E-32 4.9E-37 207.1 23.2 172 12-183 7-189 (195)
29 1g16_A RAS-related protein SEC 100.0 3.9E-33 1.3E-37 206.0 19.6 165 15-180 2-166 (170)
30 1z2a_A RAS-related protein RAB 100.0 7.5E-33 2.6E-37 204.1 20.1 165 14-179 3-167 (168)
31 2fg5_A RAB-22B, RAS-related pr 100.0 6.9E-33 2.4E-37 209.5 20.0 167 12-178 19-185 (192)
32 3t5g_A GTP-binding protein RHE 100.0 1.1E-32 3.8E-37 206.0 20.8 168 13-181 3-171 (181)
33 2y8e_A RAB-protein 6, GH09086P 100.0 7.4E-33 2.5E-37 206.1 19.8 166 13-178 11-176 (179)
34 1x3s_A RAS-related protein RAB 100.0 4.7E-32 1.6E-36 204.7 24.2 172 9-181 8-180 (195)
35 3cph_A RAS-related protein SEC 100.0 2.1E-32 7.3E-37 209.6 22.5 173 10-183 14-186 (213)
36 3cbq_A GTP-binding protein REM 100.0 8.7E-33 3E-37 209.6 20.1 170 12-181 19-190 (195)
37 2nzj_A GTP-binding protein REM 100.0 3.1E-32 1.1E-36 202.2 22.3 167 15-182 3-172 (175)
38 4dsu_A GTPase KRAS, isoform 2B 100.0 6.2E-32 2.1E-36 203.0 24.2 167 15-183 3-170 (189)
39 1wms_A RAB-9, RAB9, RAS-relate 100.0 4.2E-32 1.4E-36 201.9 23.0 167 12-179 3-174 (177)
40 3q85_A GTP-binding protein REM 100.0 1.3E-32 4.6E-37 203.2 20.0 165 16-180 2-168 (169)
41 3ihw_A Centg3; RAS, centaurin, 100.0 4.3E-32 1.5E-36 203.9 22.9 167 9-182 13-183 (184)
42 2f7s_A C25KG, RAS-related prot 100.0 1E-32 3.5E-37 212.2 19.9 174 10-183 19-203 (217)
43 2p5s_A RAS and EF-hand domain 100.0 7.4E-33 2.5E-37 210.4 18.7 168 11-178 23-196 (199)
44 2hxs_A RAB-26, RAS-related pro 100.0 4.9E-33 1.7E-37 207.2 17.3 168 13-180 3-174 (178)
45 1z06_A RAS-related protein RAB 100.0 2.7E-32 9.2E-37 205.6 21.2 168 11-178 15-187 (189)
46 3c5c_A RAS-like protein 12; GD 100.0 2.6E-32 8.9E-37 205.6 19.8 166 12-179 17-186 (187)
47 2yc2_C IFT27, small RAB-relate 100.0 4.4E-33 1.5E-37 212.4 15.7 171 14-184 18-197 (208)
48 3q3j_B RHO-related GTP-binding 100.0 1.8E-32 6E-37 210.9 19.0 175 6-182 17-206 (214)
49 2a9k_A RAS-related protein RAL 100.0 8.2E-32 2.8E-36 201.8 22.2 170 11-181 13-183 (187)
50 2g3y_A GTP-binding protein GEM 100.0 7.5E-32 2.6E-36 206.8 21.7 169 11-180 32-204 (211)
51 1u8z_A RAS-related protein RAL 100.0 9.4E-32 3.2E-36 197.9 21.2 164 15-179 3-167 (168)
52 3oes_A GTPase rhebl1; small GT 100.0 2.1E-32 7.2E-37 208.2 18.2 170 11-181 19-189 (201)
53 3clv_A RAB5 protein, putative; 100.0 1.9E-31 6.7E-36 202.4 23.5 166 13-181 4-206 (208)
54 2j0v_A RAC-like GTP-binding pr 100.0 1.6E-32 5.6E-37 210.3 17.2 168 14-183 7-184 (212)
55 2q3h_A RAS homolog gene family 100.0 1E-31 3.6E-36 204.1 21.4 172 10-183 14-199 (201)
56 3q72_A GTP-binding protein RAD 100.0 7.6E-32 2.6E-36 198.5 19.9 163 16-180 2-165 (166)
57 2gf0_A GTP-binding protein DI- 100.0 2.8E-32 9.5E-37 206.7 18.0 163 14-178 6-170 (199)
58 1ky3_A GTP-binding protein YPT 100.0 3.8E-32 1.3E-36 202.8 18.4 169 13-181 5-180 (182)
59 3reg_A RHO-like small GTPase; 100.0 1.2E-31 4.2E-36 202.7 21.1 168 11-180 18-189 (194)
60 1c1y_A RAS-related protein RAP 100.0 7.9E-32 2.7E-36 198.4 19.5 163 15-178 2-166 (167)
61 2iwr_A Centaurin gamma 1; ANK 100.0 1.7E-31 5.9E-36 199.0 21.5 163 14-183 5-173 (178)
62 1kao_A RAP2A; GTP-binding prot 100.0 1.7E-31 5.8E-36 196.3 20.4 163 15-178 2-165 (167)
63 2atv_A RERG, RAS-like estrogen 100.0 2E-31 7E-36 201.9 21.1 167 13-181 25-193 (196)
64 2atx_A Small GTP binding prote 100.0 3.4E-31 1.2E-35 200.2 21.9 166 12-179 14-193 (194)
65 3con_A GTPase NRAS; structural 100.0 1.1E-30 3.8E-35 196.7 22.7 171 12-184 17-188 (190)
66 1m7b_A RND3/RHOE small GTP-bin 100.0 2.1E-31 7.2E-36 199.9 18.3 166 12-179 3-183 (184)
67 1mh1_A RAC1; GTP-binding, GTPa 100.0 4E-31 1.4E-35 198.0 19.7 165 14-180 3-181 (186)
68 2j1l_A RHO-related GTP-binding 100.0 3.9E-31 1.3E-35 203.3 19.3 168 13-182 31-212 (214)
69 4djt_A GTP-binding nuclear pro 100.0 1.2E-31 4E-36 206.4 15.6 173 11-183 6-179 (218)
70 1gwn_A RHO-related GTP-binding 100.0 5.7E-31 1.9E-35 201.2 18.5 166 12-179 24-204 (205)
71 2ce2_X GTPase HRAS; signaling 100.0 3.9E-30 1.3E-34 188.7 21.9 162 16-179 3-165 (166)
72 2gco_A H9, RHO-related GTP-bin 100.0 3.9E-30 1.3E-34 195.7 22.5 164 13-178 22-199 (201)
73 2erx_A GTP-binding protein DI- 100.0 1.2E-30 4.1E-35 192.8 18.9 162 15-177 2-165 (172)
74 3l0i_B RAS-related protein RAB 100.0 2.1E-33 7.3E-38 213.4 3.7 167 13-179 30-196 (199)
75 2cjw_A GTP-binding protein GEM 100.0 5.2E-30 1.8E-34 193.9 21.3 167 14-181 4-174 (192)
76 3t1o_A Gliding protein MGLA; G 100.0 4.9E-31 1.7E-35 199.3 15.6 168 11-182 9-195 (198)
77 2fv8_A H6, RHO-related GTP-bin 100.0 4.2E-30 1.4E-34 196.4 20.8 165 14-180 23-201 (207)
78 3bwd_D RAC-like GTP-binding pr 100.0 1.5E-31 5E-36 199.9 11.2 163 14-178 6-180 (182)
79 2f9l_A RAB11B, member RAS onco 100.0 2.8E-29 9.5E-34 190.7 23.4 169 14-182 3-171 (199)
80 3gj0_A GTP-binding nuclear pro 100.0 9.4E-31 3.2E-35 201.9 14.6 169 11-182 10-178 (221)
81 4bas_A ADP-ribosylation factor 100.0 1.5E-30 5.3E-35 197.1 14.9 168 9-182 10-192 (199)
82 4gzl_A RAS-related C3 botulinu 100.0 3.4E-30 1.2E-34 196.6 16.6 163 13-177 27-203 (204)
83 1oix_A RAS-related protein RAB 100.0 2.1E-28 7.3E-33 184.8 21.3 165 13-177 26-190 (191)
84 1zd9_A ADP-ribosylation factor 100.0 8E-30 2.7E-34 192.0 12.1 160 14-179 20-185 (188)
85 1upt_A ARL1, ADP-ribosylation 100.0 2.8E-29 9.6E-34 185.5 14.7 159 14-179 5-169 (171)
86 1r8s_A ADP-ribosylation factor 100.0 6.2E-30 2.1E-34 187.9 11.0 156 17-179 1-162 (164)
87 2h57_A ADP-ribosylation factor 100.0 1.9E-28 6.4E-33 184.6 18.3 162 12-179 17-187 (190)
88 1f6b_A SAR1; gtpases, N-termin 100.0 6.2E-29 2.1E-33 188.8 15.7 156 14-176 23-196 (198)
89 1m2o_B GTP-binding protein SAR 100.0 1.6E-28 5.4E-33 185.3 17.7 156 14-176 21-189 (190)
90 1ksh_A ARF-like protein 2; sma 100.0 3E-28 1E-32 182.8 18.3 160 14-180 16-181 (186)
91 2b6h_A ADP-ribosylation factor 100.0 2.9E-29 1E-33 189.7 11.3 158 14-178 27-190 (192)
92 1fzq_A ADP-ribosylation factor 100.0 4.3E-28 1.5E-32 181.5 16.5 159 14-179 14-178 (181)
93 1zj6_A ADP-ribosylation factor 100.0 6.2E-28 2.1E-32 181.3 17.2 160 14-180 14-179 (187)
94 2h17_A ADP-ribosylation factor 100.0 2.4E-28 8.3E-33 182.7 14.8 160 10-176 15-180 (181)
95 2wkq_A NPH1-1, RAS-related C3 100.0 1.3E-27 4.5E-32 194.7 20.1 163 15-179 154-330 (332)
96 2zej_A Dardarin, leucine-rich 100.0 3.5E-29 1.2E-33 187.9 9.0 164 16-180 2-179 (184)
97 3llu_A RAS-related GTP-binding 100.0 4.6E-29 1.6E-33 189.1 9.4 166 7-177 11-195 (196)
98 3th5_A RAS-related C3 botulinu 99.9 1.3E-30 4.5E-35 198.6 0.0 162 14-177 28-203 (204)
99 1moz_A ARL1, ADP-ribosylation 100.0 1E-27 3.4E-32 179.2 15.6 160 14-180 16-181 (183)
100 2x77_A ADP-ribosylation factor 100.0 7.1E-29 2.4E-33 186.7 9.3 160 14-180 20-185 (189)
101 2wji_A Ferrous iron transport 99.9 4.9E-27 1.7E-31 173.1 15.1 153 16-177 3-163 (165)
102 2qu8_A Putative nucleolar GTP- 99.9 1.6E-26 5.4E-31 179.1 17.4 167 14-183 27-209 (228)
103 2lkc_A Translation initiation 99.9 8.2E-27 2.8E-31 173.4 13.9 161 12-181 4-173 (178)
104 3c5h_A Glucocorticoid receptor 99.9 3.1E-28 1E-32 192.0 5.9 168 9-178 12-254 (255)
105 2fh5_B SR-beta, signal recogni 99.9 3.2E-27 1.1E-31 181.1 11.4 160 14-176 5-213 (214)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 1.2E-26 4.3E-31 187.4 14.0 163 15-179 2-181 (307)
107 3o47_A ADP-ribosylation factor 99.9 4.7E-27 1.6E-31 191.6 9.9 159 14-179 163-327 (329)
108 2cxx_A Probable GTP-binding pr 99.9 1.5E-26 5.3E-31 173.6 11.0 158 17-183 2-188 (190)
109 2wjg_A FEOB, ferrous iron tran 99.9 5E-26 1.7E-30 170.7 13.8 158 14-180 5-170 (188)
110 3lvq_E ARF-GAP with SH3 domain 99.9 2.4E-26 8.3E-31 197.2 11.8 161 13-180 319-485 (497)
111 1svi_A GTP-binding protein YSX 99.9 7.5E-26 2.6E-30 170.7 12.7 159 12-177 19-193 (195)
112 2dyk_A GTP-binding protein; GT 99.9 2.4E-25 8.1E-30 162.7 13.3 150 17-177 2-160 (161)
113 2gj8_A MNME, tRNA modification 99.9 6.5E-26 2.2E-30 168.4 10.3 152 16-177 4-164 (172)
114 3a1s_A Iron(II) transport prot 99.9 5.3E-25 1.8E-29 173.7 15.0 156 14-178 3-166 (258)
115 3r7w_B Gtpase2, GTP-binding pr 99.9 1.6E-26 5.5E-31 186.0 5.8 157 18-181 1-176 (331)
116 3iev_A GTP-binding protein ERA 99.9 1.1E-24 3.8E-29 176.0 16.7 164 11-178 5-181 (308)
117 3iby_A Ferrous iron transport 99.9 2.6E-25 8.9E-30 175.2 10.1 151 17-176 2-164 (256)
118 3b1v_A Ferrous iron uptake tra 99.9 4.2E-25 1.4E-29 175.3 11.0 153 15-177 2-162 (272)
119 3pqc_A Probable GTP-binding pr 99.9 2E-24 6.8E-29 162.6 13.9 158 11-178 18-193 (195)
120 3dpu_A RAB family protein; roc 99.9 1.9E-25 6.3E-30 193.2 9.1 165 12-180 37-209 (535)
121 3k53_A Ferrous iron transport 99.9 7.5E-24 2.6E-28 168.3 13.3 157 15-179 2-166 (271)
122 4dhe_A Probable GTP-binding pr 99.9 3.4E-24 1.1E-28 165.1 10.7 163 12-180 25-212 (223)
123 3i8s_A Ferrous iron transport 99.9 3.1E-24 1E-28 170.8 9.9 154 16-178 3-168 (274)
124 1nrj_B SR-beta, signal recogni 99.9 1.4E-24 4.9E-29 166.7 5.6 144 13-165 9-170 (218)
125 2e87_A Hypothetical protein PH 99.9 1.4E-22 4.8E-27 166.9 16.3 163 14-181 165-338 (357)
126 3gee_A MNME, tRNA modification 99.9 9.1E-23 3.1E-27 173.2 13.6 157 15-178 232-397 (476)
127 2hjg_A GTP-binding protein ENG 99.9 7E-23 2.4E-27 172.9 12.8 160 14-179 173-349 (436)
128 4dcu_A GTP-binding protein ENG 99.9 1.5E-22 5E-27 171.9 13.2 161 14-180 193-370 (456)
129 1wf3_A GTP-binding protein; GT 99.9 2E-22 6.8E-27 162.2 12.2 154 15-177 6-171 (301)
130 3qq5_A Small GTP-binding prote 99.9 3.1E-23 1.1E-27 173.4 6.4 160 12-180 30-197 (423)
131 1lnz_A SPO0B-associated GTP-bi 99.9 1.2E-22 4.2E-27 165.7 9.2 157 18-179 160-330 (342)
132 3lxx_A GTPase IMAP family memb 99.9 8.3E-22 2.8E-26 153.6 11.4 166 10-179 23-214 (239)
133 1xzp_A Probable tRNA modificat 99.9 1.5E-21 5E-26 166.0 13.4 153 16-179 243-405 (482)
134 1wb1_A Translation elongation 99.9 3.2E-21 1.1E-25 164.4 15.5 159 11-178 14-188 (482)
135 3sjy_A Translation initiation 99.9 1.1E-20 3.6E-25 158.1 17.7 162 13-177 5-190 (403)
136 1s0u_A EIF-2-gamma, translatio 99.9 7.2E-21 2.5E-25 159.3 16.6 160 13-178 5-197 (408)
137 1mky_A Probable GTP-binding pr 99.9 3.2E-21 1.1E-25 162.9 14.4 151 17-179 2-166 (439)
138 3cb4_D GTP-binding protein LEP 99.9 8.1E-21 2.8E-25 164.9 15.6 158 15-178 3-181 (599)
139 1cip_A Protein (guanine nucleo 99.9 5.4E-21 1.8E-25 156.6 13.4 125 54-180 184-345 (353)
140 2ywe_A GTP-binding protein LEP 99.9 1.4E-20 4.6E-25 163.3 16.6 160 14-179 4-184 (600)
141 2qtf_A Protein HFLX, GTP-bindi 99.9 2.4E-20 8.3E-25 153.5 17.0 160 18-180 181-355 (364)
142 1kk1_A EIF2gamma; initiation o 99.9 9.3E-21 3.2E-25 158.8 14.4 161 12-178 6-199 (410)
143 3lxw_A GTPase IMAP family memb 99.9 7.7E-21 2.6E-25 148.9 12.8 168 11-180 16-209 (247)
144 2xtp_A GTPase IMAP family memb 99.8 9.1E-21 3.1E-25 149.5 12.7 165 12-180 18-209 (260)
145 3j2k_7 ERF3, eukaryotic polype 99.8 1.5E-20 5E-25 158.7 14.5 156 11-171 12-217 (439)
146 3geh_A MNME, tRNA modification 99.8 2.7E-21 9.1E-26 163.7 9.2 153 15-179 223-384 (462)
147 3p26_A Elongation factor 1 alp 99.8 2.8E-21 9.6E-26 165.0 9.0 154 14-169 31-228 (483)
148 3t5d_A Septin-7; GTP-binding p 99.8 6.2E-21 2.1E-25 151.7 9.3 160 13-176 5-201 (274)
149 2hjg_A GTP-binding protein ENG 99.8 1.9E-21 6.4E-26 164.2 6.6 152 17-178 4-164 (436)
150 1mky_A Probable GTP-binding pr 99.8 3.2E-20 1.1E-24 156.8 14.0 160 14-179 178-355 (439)
151 3izy_P Translation initiation 99.8 5E-23 1.7E-27 176.4 -3.2 157 15-177 3-166 (537)
152 3ohm_A Guanine nucleotide-bind 99.8 7E-20 2.4E-24 148.1 14.4 127 53-181 157-320 (327)
153 2ged_A SR-beta, signal recogni 99.8 5.9E-21 2E-25 143.6 7.6 116 13-137 45-172 (193)
154 1ega_A Protein (GTP-binding pr 99.8 5.7E-20 2E-24 147.9 13.4 156 15-177 7-173 (301)
155 2xtz_A Guanine nucleotide-bind 99.8 7E-20 2.4E-24 149.9 13.4 119 63-181 181-347 (354)
156 2qag_A Septin-2, protein NEDD5 99.8 3.8E-21 1.3E-25 158.4 5.3 164 14-183 35-237 (361)
157 1d2e_A Elongation factor TU (E 99.8 3.5E-20 1.2E-24 154.6 10.9 159 15-177 2-193 (397)
158 1zun_B Sulfate adenylate trans 99.8 5.7E-20 1.9E-24 155.0 11.7 155 13-171 21-216 (434)
159 1jny_A EF-1-alpha, elongation 99.8 4.5E-21 1.5E-25 161.8 4.8 155 14-171 4-205 (435)
160 1azs_C GS-alpha; complex (lyas 99.8 3.7E-19 1.3E-23 147.4 16.2 125 56-182 210-388 (402)
161 1zcb_A G alpha I/13; GTP-bindi 99.8 1.3E-19 4.6E-24 148.8 13.2 126 54-181 192-355 (362)
162 4dcu_A GTP-binding protein ENG 99.8 9.1E-21 3.1E-25 160.9 6.4 155 14-177 21-183 (456)
163 2elf_A Protein translation elo 99.8 5.2E-20 1.8E-24 152.0 10.7 147 18-180 23-181 (370)
164 2c78_A Elongation factor TU-A; 99.8 1.5E-20 5.2E-25 157.3 6.9 150 12-165 7-180 (405)
165 1g7s_A Translation initiation 99.8 2.3E-19 8E-24 155.9 13.5 159 15-180 4-219 (594)
166 4fid_A G protein alpha subunit 99.8 1.9E-19 6.6E-24 146.0 11.7 116 64-179 160-328 (340)
167 1r5b_A Eukaryotic peptide chai 99.8 1.8E-20 6E-25 159.3 5.1 155 14-170 41-243 (467)
168 3tr5_A RF-3, peptide chain rel 99.8 1.1E-19 3.8E-24 156.1 10.0 116 14-135 11-148 (528)
169 3izq_1 HBS1P, elongation facto 99.8 1.9E-20 6.5E-25 163.5 4.7 153 14-169 165-362 (611)
170 1zo1_I IF2, translation initia 99.8 1.7E-21 5.9E-26 165.6 -3.5 152 15-175 3-163 (501)
171 2aka_B Dynamin-1; fusion prote 99.8 9.6E-20 3.3E-24 146.3 6.8 162 12-176 22-250 (299)
172 1f60_A Elongation factor EEF1A 99.8 3.6E-20 1.2E-24 157.1 3.8 151 14-169 5-202 (458)
173 1pui_A ENGB, probable GTP-bind 99.8 1.4E-18 4.9E-23 132.3 12.2 155 14-177 24-197 (210)
174 3avx_A Elongation factor TS, e 99.8 7.5E-19 2.6E-23 159.8 10.2 160 12-175 292-482 (1289)
175 3def_A T7I23.11 protein; chlor 99.8 1.4E-17 4.7E-22 131.5 13.9 124 15-141 35-171 (262)
176 2j69_A Bacterial dynamin-like 99.8 1.2E-17 4.2E-22 147.9 15.0 165 14-181 67-327 (695)
177 2dy1_A Elongation factor G; tr 99.8 5.5E-18 1.9E-22 149.5 12.5 117 14-134 7-139 (665)
178 1udx_A The GTP-binding protein 99.8 8.8E-18 3E-22 140.1 13.0 160 18-181 159-327 (416)
179 3mca_A HBS1, elongation factor 99.7 4.6E-20 1.6E-24 160.6 -2.1 150 13-167 174-371 (592)
180 3t34_A Dynamin-related protein 99.7 2.4E-18 8.4E-23 141.8 8.1 156 15-172 33-254 (360)
181 2h5e_A Peptide chain release f 99.7 2.8E-17 9.4E-22 141.4 13.7 118 14-135 11-148 (529)
182 1dar_A EF-G, elongation factor 99.7 2.9E-17 1E-21 145.4 13.2 118 12-135 8-143 (691)
183 1jwy_B Dynamin A GTPase domain 99.7 3.8E-17 1.3E-21 132.1 11.9 111 65-178 131-261 (315)
184 2qnr_A Septin-2, protein NEDD5 99.7 2E-18 6.9E-23 138.8 3.9 164 13-182 15-217 (301)
185 1h65_A Chloroplast outer envel 99.7 3E-17 1E-21 130.1 10.4 123 15-140 38-173 (270)
186 1u0l_A Probable GTPase ENGC; p 99.7 5.6E-18 1.9E-22 136.3 5.6 134 31-175 32-169 (301)
187 2rdo_7 EF-G, elongation factor 99.7 8.7E-16 3E-20 136.2 17.8 120 12-135 6-148 (704)
188 1wxq_A GTP-binding protein; st 99.7 1.3E-17 4.5E-22 138.7 5.6 85 17-101 1-114 (397)
189 2qag_C Septin-7; cell cycle, c 99.7 2.8E-17 9.6E-22 137.2 7.3 158 12-175 27-223 (418)
190 2xex_A Elongation factor G; GT 99.7 2.5E-16 8.7E-21 139.5 13.4 118 12-135 6-141 (693)
191 1jal_A YCHF protein; nucleotid 99.6 5.2E-15 1.8E-19 121.0 15.3 145 17-161 3-239 (363)
192 2wsm_A Hydrogenase expression/ 99.6 3E-16 1E-20 120.4 6.9 155 15-180 29-215 (221)
193 2x2e_A Dynamin-1; nitration, h 99.6 8.1E-17 2.8E-21 132.3 2.2 159 14-175 29-254 (353)
194 2hf9_A Probable hydrogenase ni 99.6 1.5E-17 5.1E-22 128.1 -3.4 154 15-179 37-224 (226)
195 3p32_A Probable GTPase RV1496/ 99.6 5.2E-16 1.8E-20 127.6 5.0 103 65-179 172-284 (355)
196 3vqt_A RF-3, peptide chain rel 99.6 1E-14 3.5E-19 125.9 10.8 114 15-134 30-165 (548)
197 2dby_A GTP-binding protein; GD 99.6 4.1E-14 1.4E-18 116.3 12.6 154 17-170 2-253 (368)
198 1n0u_A EF-2, elongation factor 99.6 1.8E-14 6E-19 130.1 11.2 118 13-134 16-163 (842)
199 2qpt_A EH domain-containing pr 99.5 8.1E-15 2.8E-19 126.7 7.5 122 12-136 61-233 (550)
200 4a9a_A Ribosome-interacting GT 99.5 3E-13 1E-17 111.2 16.2 155 13-171 69-240 (376)
201 2www_A Methylmalonic aciduria 99.5 3.7E-15 1.3E-19 122.1 3.6 102 65-178 167-278 (349)
202 2p67_A LAO/AO transport system 99.5 6.2E-14 2.1E-18 114.6 8.2 104 64-178 148-260 (341)
203 1yrb_A ATP(GTP)binding protein 99.5 5.4E-13 1.8E-17 104.8 11.8 111 65-178 109-256 (262)
204 3zvr_A Dynamin-1; hydrolase, D 99.4 2E-13 7E-18 120.8 8.4 159 14-175 49-274 (772)
205 3j25_A Tetracycline resistance 99.4 1.1E-13 3.7E-18 121.7 5.2 114 17-134 3-132 (638)
206 2qm8_A GTPase/ATPase; G protei 99.4 6.7E-13 2.3E-17 108.2 8.7 104 64-178 147-260 (337)
207 4fn5_A EF-G 1, elongation fact 99.4 9.7E-12 3.3E-16 110.6 16.6 119 12-134 9-150 (709)
208 2yv5_A YJEQ protein; hydrolase 99.4 7.4E-13 2.5E-17 106.4 8.1 97 75-174 66-164 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 4.2E-11 1.4E-15 99.1 14.1 88 13-100 17-127 (392)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 2.8E-12 9.7E-17 105.9 5.6 90 14-103 20-131 (396)
211 3l82_B F-box only protein 4; T 99.3 3.1E-12 1.1E-16 95.9 5.2 104 73-178 110-222 (227)
212 3l2o_B F-box only protein 4; s 99.1 5.5E-11 1.9E-15 93.4 6.7 106 72-179 194-308 (312)
213 3ec1_A YQEH GTPase; atnos1, at 98.9 1.3E-10 4.5E-15 95.8 0.3 140 17-166 163-318 (369)
214 3h2y_A GTPase family protein; 98.9 5.8E-09 2E-13 85.9 10.0 96 74-176 55-157 (368)
215 2qag_B Septin-6, protein NEDD5 98.9 2.6E-09 8.8E-14 89.0 7.5 115 16-135 42-190 (427)
216 2j37_W Signal recognition part 98.9 1.1E-08 3.7E-13 87.2 10.5 152 14-176 99-310 (504)
217 3h2y_A GTPase family protein; 98.8 1.5E-10 5.3E-15 95.3 -2.8 136 17-160 161-311 (368)
218 3sop_A Neuronal-specific septi 98.8 1.7E-08 5.8E-13 79.6 7.6 136 16-157 2-178 (270)
219 1puj_A YLQF, conserved hypothe 98.7 2.7E-08 9.4E-13 78.9 7.9 101 69-179 3-106 (282)
220 3ec1_A YQEH GTPase; atnos1, at 98.7 2.5E-08 8.6E-13 82.1 7.9 96 74-176 57-159 (369)
221 1tq4_A IIGP1, interferon-induc 98.7 1.5E-07 5.1E-12 78.4 12.4 158 17-180 70-254 (413)
222 3dm5_A SRP54, signal recogniti 98.4 4.1E-07 1.4E-11 76.2 7.1 142 15-168 99-280 (443)
223 1puj_A YLQF, conserved hypothe 98.4 2.1E-07 7.1E-12 73.8 4.9 58 14-76 118-176 (282)
224 3cnl_A YLQF, putative uncharac 98.3 2E-07 6.8E-12 73.1 2.0 58 17-78 100-157 (262)
225 2v3c_C SRP54, signal recogniti 98.3 3E-06 1E-10 71.0 8.5 84 64-158 180-271 (432)
226 3kl4_A SRP54, signal recogniti 98.2 9.7E-07 3.3E-11 73.8 5.0 92 64-167 179-278 (433)
227 1f5n_A Interferon-induced guan 98.2 9.4E-07 3.2E-11 76.6 4.1 63 14-76 36-102 (592)
228 1j8m_F SRP54, signal recogniti 98.1 8.7E-06 3E-10 64.9 8.7 93 64-169 180-281 (297)
229 3szr_A Interferon-induced GTP- 98.1 6.8E-06 2.3E-10 71.9 8.4 23 18-40 47-69 (608)
230 1t9h_A YLOQ, probable GTPase E 98.1 1.2E-06 4.2E-11 70.0 2.9 88 81-171 79-169 (307)
231 3cnl_A YLQF, putative uncharac 98.1 2E-06 6.8E-11 67.4 4.1 93 72-175 4-97 (262)
232 3e70_C DPA, signal recognition 98.0 1.5E-05 5.2E-10 64.4 7.7 142 16-169 129-310 (328)
233 2rcn_A Probable GTPase ENGC; Y 97.8 4.4E-05 1.5E-09 62.3 7.5 84 85-172 127-212 (358)
234 1bif_A 6-phosphofructo-2-kinas 97.8 1.6E-06 5.3E-11 73.7 -1.7 102 14-117 37-148 (469)
235 3q5d_A Atlastin-1; G protein, 97.6 6.5E-05 2.2E-09 63.0 5.1 26 14-39 65-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.4 8.7E-05 3E-09 54.5 3.3 23 18-40 2-24 (178)
237 2xxa_A Signal recognition part 97.4 0.0041 1.4E-07 52.1 13.6 81 64-155 183-270 (433)
238 1kgd_A CASK, peripheral plasma 97.3 0.00012 4.1E-09 53.7 3.0 22 18-39 7-28 (180)
239 1lvg_A Guanylate kinase, GMP k 97.3 0.00013 4.4E-09 54.5 3.0 22 18-39 6-27 (198)
240 2yv5_A YJEQ protein; hydrolase 97.2 0.00064 2.2E-08 54.2 6.3 22 18-40 167-188 (302)
241 1znw_A Guanylate kinase, GMP k 97.2 0.00019 6.6E-09 53.8 3.0 23 18-40 22-44 (207)
242 3a00_A Guanylate kinase, GMP k 97.2 0.00019 6.6E-09 52.9 2.9 21 19-39 4-24 (186)
243 3co5_A Putative two-component 97.2 0.00075 2.6E-08 47.5 5.9 22 18-39 29-50 (143)
244 3tr0_A Guanylate kinase, GMP k 97.2 0.0002 6.9E-09 53.3 3.0 22 18-39 9-30 (205)
245 1zu4_A FTSY; GTPase, signal re 97.2 0.0016 5.4E-08 52.4 8.4 93 64-168 191-295 (320)
246 1s96_A Guanylate kinase, GMP k 97.2 0.00021 7.1E-09 54.3 3.0 23 18-40 18-40 (219)
247 1t9h_A YLOQ, probable GTPase E 97.1 0.0001 3.6E-09 58.8 1.3 23 18-40 175-197 (307)
248 1zp6_A Hypothetical protein AT 97.1 0.00022 7.5E-09 52.5 2.9 22 18-39 11-32 (191)
249 1z6g_A Guanylate kinase; struc 97.1 0.00024 8.1E-09 53.9 3.0 23 18-40 25-47 (218)
250 4gp7_A Metallophosphoesterase; 97.1 0.00023 8E-09 51.7 2.6 20 18-37 11-30 (171)
251 3tif_A Uncharacterized ABC tra 97.1 0.00027 9.1E-09 54.3 2.9 23 18-40 33-55 (235)
252 2ffh_A Protein (FFH); SRP54, s 97.1 0.0016 5.4E-08 54.4 7.7 85 65-159 181-271 (425)
253 1htw_A HI0065; nucleotide-bind 97.1 0.0003 1E-08 50.6 3.0 23 18-40 35-57 (158)
254 3c8u_A Fructokinase; YP_612366 97.1 0.00028 9.6E-09 53.0 2.9 25 16-40 22-46 (208)
255 3ney_A 55 kDa erythrocyte memb 97.0 0.00034 1.2E-08 52.2 2.9 22 18-39 21-42 (197)
256 1ex7_A Guanylate kinase; subst 97.0 0.00038 1.3E-08 51.5 3.1 21 19-39 4-24 (186)
257 3tau_A Guanylate kinase, GMP k 97.0 0.00036 1.2E-08 52.4 3.0 23 18-40 10-32 (208)
258 2pcj_A ABC transporter, lipopr 97.0 0.00032 1.1E-08 53.5 2.7 23 18-40 32-54 (224)
259 2onk_A Molybdate/tungstate ABC 97.0 0.00037 1.3E-08 53.7 3.2 23 18-40 26-48 (240)
260 1b0u_A Histidine permease; ABC 97.0 0.0004 1.4E-08 54.2 3.0 23 18-40 34-56 (262)
261 1sgw_A Putative ABC transporte 97.0 0.00041 1.4E-08 52.5 3.0 23 18-40 37-59 (214)
262 3gfo_A Cobalt import ATP-bindi 97.0 0.00041 1.4E-08 54.6 3.0 23 18-40 36-58 (275)
263 2cbz_A Multidrug resistance-as 96.9 0.00048 1.7E-08 52.9 3.2 23 18-40 33-55 (237)
264 1g6h_A High-affinity branched- 96.9 0.00044 1.5E-08 53.8 2.9 23 18-40 35-57 (257)
265 1kag_A SKI, shikimate kinase I 96.9 0.00049 1.7E-08 49.7 3.0 22 18-39 6-27 (173)
266 4g1u_C Hemin import ATP-bindin 96.9 0.00045 1.5E-08 54.1 2.9 23 18-40 39-61 (266)
267 2bdt_A BH3686; alpha-beta prot 96.9 0.0005 1.7E-08 50.6 3.0 21 18-38 4-24 (189)
268 1mv5_A LMRA, multidrug resista 96.9 0.00053 1.8E-08 52.9 3.2 23 18-40 30-52 (243)
269 2pze_A Cystic fibrosis transme 96.9 0.00049 1.7E-08 52.6 3.0 23 18-40 36-58 (229)
270 2olj_A Amino acid ABC transpor 96.9 0.00049 1.7E-08 53.7 3.0 23 18-40 52-74 (263)
271 1ji0_A ABC transporter; ATP bi 96.9 0.0005 1.7E-08 53.0 2.9 23 18-40 34-56 (240)
272 2ff7_A Alpha-hemolysin translo 96.9 0.00055 1.9E-08 52.9 3.2 23 18-40 37-59 (247)
273 3b85_A Phosphate starvation-in 96.9 0.00042 1.4E-08 52.2 2.4 22 18-39 24-45 (208)
274 1vpl_A ABC transporter, ATP-bi 96.9 0.00052 1.8E-08 53.4 3.0 23 18-40 43-65 (256)
275 2j41_A Guanylate kinase; GMP, 96.9 0.00053 1.8E-08 51.0 3.0 23 18-40 8-30 (207)
276 2rcn_A Probable GTPase ENGC; Y 96.9 0.00058 2E-08 55.6 3.4 24 18-41 217-240 (358)
277 3n70_A Transport activator; si 96.9 0.0033 1.1E-07 44.2 6.9 24 17-40 25-48 (145)
278 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00056 1.9E-08 53.0 3.1 22 18-39 31-52 (250)
279 2qi9_C Vitamin B12 import ATP- 96.9 0.00054 1.8E-08 53.1 3.0 23 18-40 28-50 (249)
280 2qor_A Guanylate kinase; phosp 96.9 0.00057 2E-08 51.0 3.0 22 18-39 14-35 (204)
281 4eun_A Thermoresistant glucoki 96.9 0.00058 2E-08 50.8 3.0 22 18-39 31-52 (200)
282 2zu0_C Probable ATP-dependent 96.8 0.00061 2.1E-08 53.3 3.2 22 18-39 48-69 (267)
283 2ghi_A Transport protein; mult 96.8 0.00063 2.2E-08 53.0 3.2 22 18-39 48-69 (260)
284 3asz_A Uridine kinase; cytidin 96.8 0.00063 2.1E-08 50.9 3.0 23 17-39 7-29 (211)
285 2ihy_A ABC transporter, ATP-bi 96.8 0.00066 2.3E-08 53.5 3.2 23 18-40 49-71 (279)
286 2ixe_A Antigen peptide transpo 96.8 0.00059 2E-08 53.5 2.9 23 18-40 47-69 (271)
287 2bbw_A Adenylate kinase 4, AK4 96.8 0.00072 2.5E-08 52.0 3.4 21 17-37 28-48 (246)
288 2i3b_A HCR-ntpase, human cance 96.8 0.00058 2E-08 50.6 2.7 22 18-39 3-24 (189)
289 2eyu_A Twitching motility prot 96.8 0.00064 2.2E-08 53.0 3.0 22 18-39 27-48 (261)
290 2nq2_C Hypothetical ABC transp 96.8 0.00064 2.2E-08 52.8 2.9 23 18-40 33-55 (253)
291 2v9p_A Replication protein E1; 96.8 0.00071 2.4E-08 54.0 3.2 23 18-40 128-150 (305)
292 3t61_A Gluconokinase; PSI-biol 96.8 0.00047 1.6E-08 51.3 2.0 23 17-39 19-41 (202)
293 2yz2_A Putative ABC transporte 96.8 0.00067 2.3E-08 53.1 2.9 23 18-40 35-57 (266)
294 3lw7_A Adenylate kinase relate 96.8 0.00072 2.5E-08 48.6 3.0 19 18-36 3-21 (179)
295 3cwq_A Para family chromosome 96.8 0.0015 5.2E-08 49.0 4.8 85 65-156 68-153 (209)
296 3ec2_A DNA replication protein 96.8 0.00061 2.1E-08 49.7 2.5 24 17-40 39-62 (180)
297 3kb2_A SPBC2 prophage-derived 96.7 0.00077 2.6E-08 48.5 2.9 22 18-39 3-24 (173)
298 2pjz_A Hypothetical protein ST 96.7 0.00087 3E-08 52.3 3.2 23 18-40 32-54 (263)
299 1ly1_A Polynucleotide kinase; 96.7 0.00089 3E-08 48.5 3.1 22 17-38 3-24 (181)
300 3aez_A Pantothenate kinase; tr 96.7 0.00081 2.8E-08 53.8 3.0 27 14-40 88-114 (312)
301 1knq_A Gluconate kinase; ALFA/ 96.7 0.001 3.6E-08 48.1 3.3 22 17-38 9-30 (175)
302 1u0l_A Probable GTPase ENGC; p 96.7 0.001 3.5E-08 53.0 3.4 23 18-40 171-193 (301)
303 3uie_A Adenylyl-sulfate kinase 96.7 0.00091 3.1E-08 49.7 3.0 23 17-39 26-48 (200)
304 1sxj_E Activator 1 40 kDa subu 96.7 0.0074 2.5E-07 48.7 8.6 21 19-39 39-59 (354)
305 2ehv_A Hypothetical protein PH 96.7 0.00097 3.3E-08 51.1 3.1 21 18-38 32-52 (251)
306 1fnn_A CDC6P, cell division co 96.7 0.0025 8.5E-08 52.0 5.8 23 18-40 46-68 (389)
307 3vaa_A Shikimate kinase, SK; s 96.7 0.0011 3.7E-08 49.3 3.3 21 18-38 27-47 (199)
308 3lnc_A Guanylate kinase, GMP k 96.7 0.00058 2E-08 52.0 1.8 22 18-39 29-51 (231)
309 4a74_A DNA repair and recombin 96.7 0.00087 3E-08 50.6 2.8 23 18-40 27-49 (231)
310 1qhx_A CPT, protein (chloramph 96.7 0.001 3.5E-08 48.3 3.0 22 18-39 5-26 (178)
311 2chg_A Replication factor C sm 96.6 0.0027 9.2E-08 47.2 5.3 21 19-39 41-61 (226)
312 1cke_A CK, MSSA, protein (cyti 96.6 0.0012 4E-08 49.9 3.3 22 17-38 6-27 (227)
313 3fvq_A Fe(3+) IONS import ATP- 96.6 0.00097 3.3E-08 54.4 2.9 23 18-40 32-54 (359)
314 1jjv_A Dephospho-COA kinase; P 96.6 0.0014 4.8E-08 48.8 3.6 22 17-38 3-24 (206)
315 1np6_A Molybdopterin-guanine d 96.6 0.0012 4E-08 48.3 3.0 23 17-39 7-29 (174)
316 3nh6_A ATP-binding cassette SU 96.6 0.00071 2.4E-08 54.0 1.9 23 18-40 82-104 (306)
317 2if2_A Dephospho-COA kinase; a 96.6 0.0012 4.1E-08 49.1 3.1 22 17-38 2-23 (204)
318 2bbs_A Cystic fibrosis transme 96.6 0.0011 3.7E-08 52.5 3.0 23 18-40 66-88 (290)
319 3pfi_A Holliday junction ATP-d 96.6 0.0095 3.2E-07 47.8 8.6 23 17-39 56-78 (338)
320 3tui_C Methionine import ATP-b 96.6 0.0012 4E-08 54.0 3.2 23 18-40 56-78 (366)
321 1z47_A CYSA, putative ABC-tran 96.6 0.0012 4E-08 53.9 3.1 23 18-40 43-65 (355)
322 3fb4_A Adenylate kinase; psych 96.6 0.0011 3.8E-08 49.7 2.8 21 18-38 2-22 (216)
323 3dl0_A Adenylate kinase; phosp 96.6 0.0012 4E-08 49.6 2.8 21 18-38 2-22 (216)
324 2yyz_A Sugar ABC transporter, 96.6 0.0012 4.2E-08 53.8 3.1 23 18-40 31-53 (359)
325 1lw7_A Transcriptional regulat 96.6 0.001 3.5E-08 54.4 2.7 25 16-40 170-194 (365)
326 2it1_A 362AA long hypothetical 96.5 0.0013 4.3E-08 53.8 3.2 23 18-40 31-53 (362)
327 3rlf_A Maltose/maltodextrin im 96.5 0.0013 4.4E-08 54.0 3.2 23 18-40 31-53 (381)
328 2jeo_A Uridine-cytidine kinase 96.5 0.0013 4.4E-08 50.6 3.0 23 17-39 26-48 (245)
329 2x8a_A Nuclear valosin-contain 96.5 0.0013 4.4E-08 51.7 3.0 21 19-39 47-67 (274)
330 2qt1_A Nicotinamide riboside k 96.5 0.0018 6.2E-08 48.3 3.7 26 14-39 19-44 (207)
331 2jaq_A Deoxyguanosine kinase; 96.5 0.0016 5.4E-08 48.2 3.3 21 18-38 2-22 (205)
332 1v43_A Sugar-binding transport 96.5 0.0014 4.8E-08 53.7 3.2 23 18-40 39-61 (372)
333 2kjq_A DNAA-related protein; s 96.5 0.0011 3.6E-08 47.2 2.1 23 18-40 38-60 (149)
334 1g29_1 MALK, maltose transport 96.5 0.0014 4.7E-08 53.8 3.1 23 18-40 31-53 (372)
335 2f1r_A Molybdopterin-guanine d 96.5 0.00066 2.3E-08 49.5 1.0 23 18-40 4-26 (171)
336 1nks_A Adenylate kinase; therm 96.5 0.0016 5.6E-08 47.6 3.2 22 17-38 2-23 (194)
337 3jvv_A Twitching mobility prot 96.5 0.0015 5E-08 53.3 3.0 22 18-39 125-146 (356)
338 3trf_A Shikimate kinase, SK; a 96.5 0.0018 6E-08 47.3 3.2 22 17-38 6-27 (185)
339 1uj2_A Uridine-cytidine kinase 96.4 0.0018 6.3E-08 50.0 3.4 27 12-38 18-44 (252)
340 3cm0_A Adenylate kinase; ATP-b 96.4 0.0024 8.1E-08 46.6 3.8 22 17-38 5-26 (186)
341 1ixz_A ATP-dependent metallopr 96.4 0.0017 5.7E-08 50.1 3.0 21 19-39 52-72 (254)
342 1kht_A Adenylate kinase; phosp 96.4 0.0017 5.9E-08 47.5 3.0 22 17-38 4-25 (192)
343 3sr0_A Adenylate kinase; phosp 96.4 0.0018 6E-08 48.7 3.0 21 18-38 2-22 (206)
344 1rj9_A FTSY, signal recognitio 96.4 0.0017 5.7E-08 51.8 3.0 84 66-159 186-281 (304)
345 2rhm_A Putative kinase; P-loop 96.4 0.0016 5.5E-08 47.8 2.7 22 17-38 6-27 (193)
346 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.019 6.3E-07 46.0 9.0 23 17-39 46-68 (322)
347 3d31_A Sulfate/molybdate ABC t 96.4 0.0012 4E-08 53.7 1.9 23 18-40 28-50 (348)
348 3tqc_A Pantothenate kinase; bi 96.4 0.0024 8.2E-08 51.3 3.7 26 14-39 90-115 (321)
349 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0017 5.9E-08 52.4 2.9 23 18-40 173-195 (330)
350 3tlx_A Adenylate kinase 2; str 96.4 0.0024 8E-08 49.1 3.5 24 15-38 28-51 (243)
351 3b9q_A Chloroplast SRP recepto 96.3 0.0019 6.6E-08 51.4 3.0 22 17-38 101-122 (302)
352 1ukz_A Uridylate kinase; trans 96.3 0.0028 9.5E-08 47.0 3.7 24 15-38 14-37 (203)
353 2cdn_A Adenylate kinase; phosp 96.3 0.002 6.9E-08 47.8 3.0 23 16-38 20-42 (201)
354 1gvn_B Zeta; postsegregational 96.3 0.0027 9.3E-08 50.1 3.8 23 16-38 33-55 (287)
355 1via_A Shikimate kinase; struc 96.3 0.0018 6.2E-08 46.9 2.6 21 18-38 6-26 (175)
356 1odf_A YGR205W, hypothetical 3 96.3 0.0027 9.2E-08 50.3 3.7 26 14-39 29-54 (290)
357 2gza_A Type IV secretion syste 96.3 0.0018 6.1E-08 52.9 2.8 23 18-40 177-199 (361)
358 1uf9_A TT1252 protein; P-loop, 96.3 0.0023 8E-08 47.3 3.2 26 14-39 6-31 (203)
359 2plr_A DTMP kinase, probable t 96.3 0.0026 8.8E-08 47.3 3.5 22 17-38 5-26 (213)
360 2ze6_A Isopentenyl transferase 96.3 0.0021 7.2E-08 49.8 3.0 21 18-38 3-23 (253)
361 3gd7_A Fusion complex of cysti 96.3 0.0019 6.5E-08 53.3 2.9 22 18-39 49-70 (390)
362 1e4v_A Adenylate kinase; trans 96.3 0.002 6.7E-08 48.4 2.7 21 18-38 2-22 (214)
363 2ewv_A Twitching motility prot 96.3 0.002 6.7E-08 52.9 2.9 22 18-39 138-159 (372)
364 1y63_A LMAJ004144AAA protein; 96.3 0.0021 7.3E-08 47.1 2.8 23 17-39 11-33 (184)
365 1sq5_A Pantothenate kinase; P- 96.3 0.0026 8.7E-08 50.8 3.5 24 16-39 80-103 (308)
366 3te6_A Regulatory protein SIR3 96.3 0.0057 2E-07 49.0 5.5 24 17-40 46-69 (318)
367 1aky_A Adenylate kinase; ATP:A 96.3 0.0021 7.3E-08 48.4 2.8 22 17-38 5-26 (220)
368 1tev_A UMP-CMP kinase; ploop, 96.3 0.0029 1E-07 46.3 3.5 22 17-38 4-25 (196)
369 1jbk_A CLPB protein; beta barr 96.3 0.0025 8.4E-08 46.2 3.0 22 18-39 45-66 (195)
370 1iy2_A ATP-dependent metallopr 96.3 0.0023 8E-08 50.1 3.0 22 19-40 76-97 (278)
371 3iij_A Coilin-interacting nucl 96.3 0.0025 8.4E-08 46.4 2.9 22 17-38 12-33 (180)
372 1in4_A RUVB, holliday junction 96.2 0.0023 8E-08 51.6 3.0 23 18-40 53-75 (334)
373 1oxx_K GLCV, glucose, ABC tran 96.2 0.0011 3.9E-08 53.9 1.1 23 18-40 33-55 (353)
374 2p5t_B PEZT; postsegregational 96.2 0.0024 8.2E-08 49.4 2.9 25 14-38 30-54 (253)
375 4e22_A Cytidylate kinase; P-lo 96.2 0.003 1E-07 48.8 3.4 21 17-37 28-48 (252)
376 2vp4_A Deoxynucleoside kinase; 96.2 0.0035 1.2E-07 47.7 3.7 24 16-39 20-43 (230)
377 1rz3_A Hypothetical protein rb 96.2 0.003 1E-07 47.0 3.3 23 16-38 22-44 (201)
378 1p9r_A General secretion pathw 96.2 0.0024 8.3E-08 53.2 3.0 23 18-40 169-191 (418)
379 3kta_A Chromosome segregation 96.2 0.0026 9E-08 46.3 2.8 21 18-38 28-48 (182)
380 1xjc_A MOBB protein homolog; s 96.2 0.003 1E-07 45.8 3.0 23 17-39 5-27 (169)
381 2pt5_A Shikimate kinase, SK; a 96.2 0.0033 1.1E-07 45.0 3.2 21 18-38 2-22 (168)
382 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0029 9.8E-08 47.7 3.0 22 18-39 25-46 (235)
383 2yvu_A Probable adenylyl-sulfa 96.1 0.0044 1.5E-07 45.3 3.8 24 16-39 13-36 (186)
384 1zd8_A GTP:AMP phosphotransfer 96.1 0.0032 1.1E-07 47.7 3.1 22 17-38 8-29 (227)
385 3be4_A Adenylate kinase; malar 96.1 0.0027 9.1E-08 47.8 2.6 23 16-38 5-27 (217)
386 1ojl_A Transcriptional regulat 96.1 0.045 1.5E-06 43.4 9.8 23 17-39 26-48 (304)
387 2xb4_A Adenylate kinase; ATP-b 96.1 0.0031 1.1E-07 47.7 2.9 21 18-38 2-22 (223)
388 2v54_A DTMP kinase, thymidylat 96.1 0.0034 1.1E-07 46.5 3.0 23 17-39 5-27 (204)
389 2oap_1 GSPE-2, type II secreti 96.1 0.0029 1E-07 54.1 2.9 23 18-40 262-284 (511)
390 2og2_A Putative signal recogni 96.1 0.0032 1.1E-07 51.4 3.0 22 17-38 158-179 (359)
391 1gtv_A TMK, thymidylate kinase 96.1 0.0012 4.2E-08 49.3 0.5 21 18-38 2-22 (214)
392 1lv7_A FTSH; alpha/beta domain 96.1 0.0034 1.2E-07 48.5 3.0 22 18-39 47-68 (257)
393 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0028 9.7E-08 53.4 2.8 22 18-39 140-161 (460)
394 2c95_A Adenylate kinase 1; tra 96.1 0.0032 1.1E-07 46.2 2.8 22 17-38 10-31 (196)
395 1qf9_A UMP/CMP kinase, protein 96.0 0.0042 1.4E-07 45.4 3.3 22 17-38 7-28 (194)
396 1zak_A Adenylate kinase; ATP:A 96.0 0.0034 1.1E-07 47.4 2.8 22 17-38 6-27 (222)
397 1e6c_A Shikimate kinase; phosp 96.0 0.0039 1.3E-07 44.8 3.0 21 18-38 4-24 (173)
398 2z0h_A DTMP kinase, thymidylat 96.0 0.0038 1.3E-07 45.9 2.9 22 18-39 2-23 (197)
399 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0044 1.5E-07 48.1 3.4 22 17-38 5-26 (260)
400 2pez_A Bifunctional 3'-phospho 96.0 0.004 1.4E-07 45.2 3.0 22 17-38 6-27 (179)
401 2obl_A ESCN; ATPase, hydrolase 96.0 0.0037 1.3E-07 50.8 3.1 23 18-40 73-95 (347)
402 2bwj_A Adenylate kinase 5; pho 96.0 0.0039 1.3E-07 45.9 3.0 22 17-38 13-34 (199)
403 2yhs_A FTSY, cell division pro 96.0 0.0036 1.2E-07 53.1 3.0 93 65-169 376-480 (503)
404 2pbr_A DTMP kinase, thymidylat 96.0 0.0039 1.3E-07 45.6 2.9 21 18-38 2-22 (195)
405 1cr0_A DNA primase/helicase; R 96.0 0.0035 1.2E-07 49.5 2.8 23 18-40 37-59 (296)
406 2iyv_A Shikimate kinase, SK; t 96.0 0.0041 1.4E-07 45.3 2.9 21 18-38 4-24 (184)
407 2wwf_A Thymidilate kinase, put 96.0 0.0037 1.3E-07 46.6 2.7 22 17-38 11-32 (212)
408 2w58_A DNAI, primosome compone 95.9 0.0043 1.5E-07 45.9 3.0 24 17-40 55-78 (202)
409 3bos_A Putative DNA replicatio 95.9 0.0043 1.5E-07 46.9 3.0 23 17-39 53-75 (242)
410 1nij_A Hypothetical protein YJ 95.9 0.0039 1.3E-07 50.0 2.9 25 16-40 4-28 (318)
411 1yqt_A RNAse L inhibitor; ATP- 95.9 0.006 2E-07 52.5 4.1 23 18-40 49-71 (538)
412 1nn5_A Similar to deoxythymidy 95.9 0.004 1.4E-07 46.4 2.7 22 17-38 10-31 (215)
413 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0052 1.8E-07 43.5 3.1 19 19-37 26-44 (149)
414 1n0w_A DNA repair protein RAD5 95.9 0.0046 1.6E-07 47.0 3.0 22 18-39 26-47 (243)
415 2p65_A Hypothetical protein PF 95.9 0.0036 1.2E-07 45.2 2.4 22 18-39 45-66 (187)
416 3euj_A Chromosome partition pr 95.9 0.0043 1.5E-07 52.6 3.0 21 18-38 31-51 (483)
417 3umf_A Adenylate kinase; rossm 95.9 0.0063 2.2E-07 46.0 3.7 21 18-38 31-51 (217)
418 4ido_A Atlastin-1; GTPase, GTP 95.9 0.016 5.3E-07 48.6 6.3 24 14-37 65-88 (457)
419 2cvh_A DNA repair and recombin 95.9 0.0047 1.6E-07 46.1 3.0 21 18-38 22-42 (220)
420 1ak2_A Adenylate kinase isoenz 95.9 0.0044 1.5E-07 47.2 2.8 22 17-38 17-38 (233)
421 2vli_A Antibiotic resistance p 95.9 0.0032 1.1E-07 45.7 2.0 22 17-38 6-27 (183)
422 3ozx_A RNAse L inhibitor; ATP 95.9 0.0057 1.9E-07 52.7 3.7 23 18-40 27-49 (538)
423 1vht_A Dephospho-COA kinase; s 95.8 0.006 2E-07 45.8 3.4 22 17-38 5-26 (218)
424 3vfd_A Spastin; ATPase, microt 95.8 0.022 7.5E-07 46.8 7.0 23 17-39 149-171 (389)
425 1zuh_A Shikimate kinase; alpha 95.8 0.0062 2.1E-07 43.7 3.2 22 17-38 8-29 (168)
426 3j16_B RLI1P; ribosome recycli 95.8 0.0066 2.2E-07 53.0 3.9 23 18-40 105-127 (608)
427 1m7g_A Adenylylsulfate kinase; 95.8 0.0054 1.9E-07 45.9 3.0 22 17-38 26-47 (211)
428 3nwj_A ATSK2; P loop, shikimat 95.8 0.0053 1.8E-07 47.5 3.0 21 18-38 50-70 (250)
429 3b60_A Lipid A export ATP-bind 95.8 0.0048 1.7E-07 53.6 3.0 23 18-40 371-393 (582)
430 1svm_A Large T antigen; AAA+ f 95.8 0.0052 1.8E-07 50.5 3.0 21 18-38 171-191 (377)
431 3r20_A Cytidylate kinase; stru 95.7 0.0054 1.8E-07 46.9 2.8 23 16-38 9-31 (233)
432 3b5x_A Lipid A export ATP-bind 95.7 0.0055 1.9E-07 53.3 3.2 23 18-40 371-393 (582)
433 2dpy_A FLII, flagellum-specifi 95.7 0.0054 1.9E-07 51.4 3.1 23 18-40 159-181 (438)
434 4eaq_A DTMP kinase, thymidylat 95.7 0.0061 2.1E-07 46.4 3.0 25 15-39 25-49 (229)
435 3b9p_A CG5977-PA, isoform A; A 95.7 0.0057 2E-07 48.1 2.9 23 17-39 55-77 (297)
436 2grj_A Dephospho-COA kinase; T 95.7 0.0086 3E-07 44.3 3.6 26 14-39 10-35 (192)
437 3bk7_A ABC transporter ATP-bin 95.6 0.0083 2.9E-07 52.4 4.0 23 18-40 119-141 (607)
438 3h4m_A Proteasome-activating n 95.6 0.0062 2.1E-07 47.6 2.9 23 17-39 52-74 (285)
439 1tue_A Replication protein E1; 95.6 0.0048 1.6E-07 46.2 2.1 21 18-38 60-80 (212)
440 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.0067 2.3E-07 46.7 3.1 23 17-39 40-62 (262)
441 2f6r_A COA synthase, bifunctio 95.6 0.0073 2.5E-07 47.5 3.2 23 15-37 74-96 (281)
442 2yl4_A ATP-binding cassette SU 95.6 0.005 1.7E-07 53.6 2.4 23 18-40 372-394 (595)
443 1njg_A DNA polymerase III subu 95.6 0.007 2.4E-07 45.5 3.0 22 18-39 47-68 (250)
444 3cf0_A Transitional endoplasmi 95.6 0.0067 2.3E-07 48.1 2.9 22 18-39 51-72 (301)
445 1ltq_A Polynucleotide kinase; 95.6 0.0072 2.5E-07 47.7 3.1 22 17-38 3-24 (301)
446 3ozx_A RNAse L inhibitor; ATP 95.6 0.0064 2.2E-07 52.3 3.0 23 18-40 296-318 (538)
447 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0075 2.6E-07 51.9 3.4 23 18-40 314-336 (538)
448 3qf4_B Uncharacterized ABC tra 95.5 0.0056 1.9E-07 53.4 2.6 23 18-40 383-405 (598)
449 4a82_A Cystic fibrosis transme 95.5 0.0049 1.7E-07 53.6 2.1 23 18-40 369-391 (578)
450 3bk7_A ABC transporter ATP-bin 95.5 0.0079 2.7E-07 52.5 3.4 23 18-40 384-406 (607)
451 3t15_A Ribulose bisphosphate c 95.5 0.0071 2.4E-07 47.8 2.8 25 16-40 36-60 (293)
452 4fcw_A Chaperone protein CLPB; 95.5 0.011 3.6E-07 46.8 3.8 26 15-40 46-71 (311)
453 1d2n_A N-ethylmaleimide-sensit 95.5 0.012 4E-07 45.8 4.0 26 14-39 62-87 (272)
454 1l8q_A Chromosomal replication 95.5 0.0077 2.6E-07 48.1 2.9 22 18-39 39-60 (324)
455 1nlf_A Regulatory protein REPA 95.4 0.0075 2.6E-07 47.2 2.8 21 18-38 32-52 (279)
456 1p5z_B DCK, deoxycytidine kina 95.4 0.0069 2.3E-07 47.0 2.5 27 13-39 21-47 (263)
457 4dzz_A Plasmid partitioning pr 95.4 0.038 1.3E-06 40.6 6.6 85 65-156 76-162 (206)
458 3qf4_A ABC transporter, ATP-bi 95.4 0.0065 2.2E-07 52.9 2.6 23 18-40 371-393 (587)
459 1q3t_A Cytidylate kinase; nucl 95.4 0.0081 2.8E-07 45.8 2.8 25 14-38 14-38 (236)
460 3j16_B RLI1P; ribosome recycli 95.4 0.0086 3E-07 52.3 3.2 22 19-40 381-402 (608)
461 3syl_A Protein CBBX; photosynt 95.4 0.01 3.4E-07 46.9 3.3 24 15-38 66-89 (309)
462 3qf7_A RAD50; ABC-ATPase, ATPa 95.3 0.0093 3.2E-07 48.7 3.1 19 19-37 26-44 (365)
463 2qmh_A HPR kinase/phosphorylas 95.3 0.011 3.8E-07 44.0 3.0 24 17-40 35-58 (205)
464 2b8t_A Thymidine kinase; deoxy 95.2 0.0021 7E-08 48.9 -1.1 21 18-38 14-34 (223)
465 3gmt_A Adenylate kinase; ssgci 95.2 0.011 3.8E-07 45.0 3.0 25 14-38 6-30 (230)
466 3zvl_A Bifunctional polynucleo 95.2 0.01 3.5E-07 49.3 3.1 23 17-39 259-281 (416)
467 2px0_A Flagellar biosynthesis 95.2 0.0097 3.3E-07 47.2 2.8 85 65-159 183-273 (296)
468 1ofh_A ATP-dependent HSL prote 95.2 0.011 3.7E-07 46.6 3.0 23 17-39 51-73 (310)
469 3u61_B DNA polymerase accessor 95.2 0.13 4.5E-06 40.8 9.4 21 19-39 51-71 (324)
470 2qby_A CDC6 homolog 1, cell di 95.2 0.01 3.4E-07 48.2 2.8 22 18-39 47-68 (386)
471 4b4t_K 26S protease regulatory 95.2 0.011 3.8E-07 49.3 3.1 23 17-39 207-229 (428)
472 3ake_A Cytidylate kinase; CMP 95.1 0.013 4.6E-07 43.2 3.2 21 18-38 4-24 (208)
473 1sxj_C Activator 1 40 kDa subu 95.1 0.011 3.8E-07 47.6 2.9 22 19-40 49-70 (340)
474 4b4t_M 26S protease regulatory 95.1 0.012 4.1E-07 49.2 3.1 24 16-39 215-238 (434)
475 3qks_A DNA double-strand break 95.1 0.014 4.7E-07 43.5 3.1 20 18-37 25-44 (203)
476 1vma_A Cell division protein F 95.1 0.013 4.4E-07 46.7 3.0 92 65-168 187-290 (306)
477 1qhl_A Protein (cell division 95.0 0.0018 6E-08 49.4 -1.9 23 19-41 30-52 (227)
478 2ga8_A Hypothetical 39.9 kDa p 95.0 0.016 5.4E-07 47.1 3.5 22 17-38 25-46 (359)
479 1pzn_A RAD51, DNA repair and r 95.0 0.012 4E-07 47.9 2.8 23 18-40 133-155 (349)
480 3crm_A TRNA delta(2)-isopenten 95.0 0.013 4.5E-07 46.9 3.0 22 17-38 6-27 (323)
481 4b4t_L 26S protease subunit RP 95.0 0.013 4.5E-07 49.0 3.1 24 16-39 215-238 (437)
482 3eie_A Vacuolar protein sortin 95.0 0.013 4.4E-07 46.9 2.9 24 16-39 51-74 (322)
483 2dr3_A UPF0273 protein PH0284; 95.0 0.013 4.5E-07 44.4 2.9 21 18-38 25-45 (247)
484 2iw3_A Elongation factor 3A; a 95.0 0.015 5.2E-07 53.3 3.6 24 18-41 463-486 (986)
485 3d3q_A TRNA delta(2)-isopenten 95.0 0.014 4.9E-07 47.1 3.1 22 17-38 8-29 (340)
486 1sxj_D Activator 1 41 kDa subu 94.9 0.014 4.8E-07 46.9 3.0 21 19-39 61-81 (353)
487 3uc9_A Increased recombination 94.9 0.03 1E-06 42.4 4.5 26 15-40 28-53 (233)
488 2r62_A Cell division protease 94.9 0.0066 2.3E-07 47.0 0.9 22 18-39 46-67 (268)
489 4b4t_J 26S protease regulatory 94.9 0.015 5.1E-07 48.1 3.0 23 17-39 183-205 (405)
490 2dhr_A FTSH; AAA+ protein, hex 94.8 0.015 5E-07 49.6 2.9 22 18-39 66-87 (499)
491 3m6a_A ATP-dependent protease 94.8 0.015 5E-07 50.2 2.9 23 18-40 110-132 (543)
492 2iw3_A Elongation factor 3A; a 94.8 0.0087 3E-07 54.9 1.6 23 18-40 701-723 (986)
493 3exa_A TRNA delta(2)-isopenten 94.8 0.017 5.9E-07 46.1 3.1 22 18-39 5-26 (322)
494 3a8t_A Adenylate isopentenyltr 94.8 0.018 6.1E-07 46.4 3.2 22 18-39 42-63 (339)
495 2qgz_A Helicase loader, putati 94.8 0.018 6.1E-07 45.9 3.2 23 17-39 153-175 (308)
496 2v1u_A Cell division control p 94.8 0.014 4.8E-07 47.3 2.6 23 17-39 45-67 (387)
497 3uk6_A RUVB-like 2; hexameric 94.7 0.015 5.2E-07 47.1 2.8 23 17-39 71-93 (368)
498 2ce7_A Cell division protein F 94.7 0.017 5.7E-07 48.9 3.0 22 18-39 51-72 (476)
499 2qp9_X Vacuolar protein sortin 94.7 0.017 5.9E-07 46.9 3.0 23 17-39 85-107 (355)
500 2z4s_A Chromosomal replication 94.7 0.017 5.7E-07 48.4 2.9 23 17-39 131-153 (440)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.5e-42 Score=262.94 Aligned_cols=171 Identities=38% Similarity=0.681 Sum_probs=146.6
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
...+.+.+||+|+|++|||||||+++|..+.+...+.+|.+.++....+..++..+.++||||+|++.+..++..+++.+
T Consensus 7 ~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a 86 (216)
T 4dkx_A 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDS 86 (216)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTC
T ss_pred CCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccc
Confidence 34556779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
+++|+|||++++.+|+.+..|+..+.......+|++|||||+|+.+.+.+..+++.+++..++++|++|||++|.||+++
T Consensus 87 ~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 87 AAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166 (216)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred cEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHH
Confidence 99999999999999999999999998887788999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 170 FEIVIREIYSN 180 (222)
Q Consensus 170 ~~~i~~~~~~~ 180 (222)
|..|++.+...
T Consensus 167 F~~i~~~i~~~ 177 (216)
T 4dkx_A 167 FRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHhh
Confidence 99999877643
No 2
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-36 Score=232.45 Aligned_cols=174 Identities=60% Similarity=0.956 Sum_probs=148.1
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
...++.++|+|+|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 34577899999999999999999999999988888888888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
++|+|||++++.+|+.+..|+..+.......+|++||+||+|+.+.+.+..+++..++...+++++++||+++.||+++|
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988766778999999999998777888888999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 040481 171 EIVIREIYSNVSRK 184 (222)
Q Consensus 171 ~~i~~~~~~~~~~~ 184 (222)
++|++.+.+.....
T Consensus 168 ~~l~~~i~~~~~~~ 181 (223)
T 3cpj_B 168 EELINTIYQKVSKH 181 (223)
T ss_dssp HHHHHHHTTCC---
T ss_pred HHHHHHHHHHhhhc
Confidence 99999888765543
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=7.4e-35 Score=222.49 Aligned_cols=172 Identities=49% Similarity=0.853 Sum_probs=158.3
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
.+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45679999999999999999999999998888888888888888888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|||++++.+|+.+..|+..+........|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|.+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877678999999999999887788888899999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 040481 173 VIREIYSNVSRK 184 (222)
Q Consensus 173 i~~~~~~~~~~~ 184 (222)
+.+.+.+.....
T Consensus 165 l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 165 MARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHCCHH
T ss_pred HHHHHHHHHhhc
Confidence 999988775543
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=218.89 Aligned_cols=173 Identities=34% Similarity=0.520 Sum_probs=151.2
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
..+....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 34556679999999999999999999999888777777766554 45667788888999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 166 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence 999999999999999999999988877653 5789999999999988778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 040481 169 AFEIVIREIYSNVSR 183 (222)
Q Consensus 169 ~~~~i~~~~~~~~~~ 183 (222)
+|.+|++.+.++...
T Consensus 167 l~~~l~~~i~~~~~~ 181 (206)
T 2bov_A 167 VFFDLMREIRARKME 181 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccc
Confidence 999999998876543
No 5
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.6e-34 Score=216.22 Aligned_cols=171 Identities=42% Similarity=0.751 Sum_probs=157.6
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 45678999999999999999999999998888888888889888888899999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++++.+|+.+..|+..+.......+|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|.
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777889999999999987778888889999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 040481 172 IVIREIYSNVS 182 (222)
Q Consensus 172 ~i~~~~~~~~~ 182 (222)
++++.+.+...
T Consensus 182 ~l~~~i~~~~~ 192 (201)
T 2ew1_A 182 DLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99998887643
No 6
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.6e-33 Score=212.75 Aligned_cols=174 Identities=52% Similarity=0.869 Sum_probs=154.6
Q ss_pred CCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcC
Q 040481 9 GGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88 (222)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 88 (222)
......+.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 34455778999999999999999999999998887778888888888888889989999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999999887667899999999999987778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 040481 169 AFEIVIREIYSNVS 182 (222)
Q Consensus 169 ~~~~i~~~~~~~~~ 182 (222)
+|.+|++.+.++..
T Consensus 174 l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 174 AFINTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887643
No 7
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=212.20 Aligned_cols=171 Identities=46% Similarity=0.830 Sum_probs=159.1
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..+..++|+++|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 44678999999999999999999999999888888898999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|.
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 040481 172 IVIREIYSNVS 182 (222)
Q Consensus 172 ~i~~~~~~~~~ 182 (222)
+|++.+.+...
T Consensus 172 ~l~~~i~~~~~ 182 (196)
T 3tkl_A 172 TMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhc
Confidence 99998887654
No 8
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-33 Score=213.54 Aligned_cols=174 Identities=44% Similarity=0.791 Sum_probs=159.0
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..++.++|+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 45678999999999999999999999999888888888888888888889989999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++++.+|+.+..|+..+........|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887667789999999999988778888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhc
Q 040481 172 IVIREIYSNVSRKV 185 (222)
Q Consensus 172 ~i~~~~~~~~~~~~ 185 (222)
+|++.+.+......
T Consensus 164 ~l~~~i~~~~~~~~ 177 (203)
T 1zbd_A 164 RLVDVICEKMSESL 177 (203)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999887765543
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3e-34 Score=214.95 Aligned_cols=172 Identities=47% Similarity=0.878 Sum_probs=128.3
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
.++.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999998887777778888888888888899889999999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|.+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876677899999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 040481 173 VIREIYSNVSRK 184 (222)
Q Consensus 173 i~~~~~~~~~~~ 184 (222)
|++.+.+...+.
T Consensus 165 l~~~i~~~~~~~ 176 (183)
T 2fu5_C 165 LARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999988765543
No 10
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=211.60 Aligned_cols=172 Identities=58% Similarity=0.955 Sum_probs=157.6
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
...++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 44567799999999999999999999999988888888888888888888889999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
++|+|||++++.++..+..|+..+........|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988766789999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 040481 171 EIVIREIYSNVS 182 (222)
Q Consensus 171 ~~i~~~~~~~~~ 182 (222)
.+|++.+.++..
T Consensus 180 ~~l~~~i~~~~~ 191 (193)
T 2oil_A 180 ETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999998887654
No 11
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.4e-33 Score=210.45 Aligned_cols=171 Identities=44% Similarity=0.780 Sum_probs=157.0
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
.++.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 46779999999999999999999999998888888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999888776678999999999999877788888899999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 040481 173 VIREIYSNVSR 183 (222)
Q Consensus 173 i~~~~~~~~~~ 183 (222)
+++.+.+....
T Consensus 167 l~~~~~~~~~~ 177 (186)
T 2bme_A 167 CARKILNKIES 177 (186)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHhhh
Confidence 99998876543
No 12
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2e-33 Score=209.27 Aligned_cols=168 Identities=50% Similarity=0.861 Sum_probs=154.2
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..++.++|+++|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 45678999999999999999999999998887778888888888888889989999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999987778888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 040481 172 IVIREIYS 179 (222)
Q Consensus 172 ~i~~~~~~ 179 (222)
++++.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99987753
No 13
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=214.74 Aligned_cols=171 Identities=44% Similarity=0.788 Sum_probs=147.3
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
...+..++|+++|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 34566799999999999999999999999887777788888888888888988899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVKSA 169 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~ 169 (222)
++|+|||++++.+|+.+..|+..+.......+|+++|+||+|+.+.+.+..+++.+++...++ +++++||++|.||+++
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999887767789999999999987778888899999999999 9999999999999999
Q ss_pred HHHHHHHHHHHh
Q 040481 170 FEIVIREIYSNV 181 (222)
Q Consensus 170 ~~~i~~~~~~~~ 181 (222)
|.+|++.+.+..
T Consensus 184 ~~~l~~~i~~~~ 195 (201)
T 2hup_A 184 FLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999887653
No 14
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=209.30 Aligned_cols=173 Identities=44% Similarity=0.744 Sum_probs=155.6
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..++.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 45678999999999999999999999998888888888989998999999998999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++++.+++.+..|+..+.... ...|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999987755 4689999999999988788888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhc
Q 040481 172 IVIREIYSNVSRKV 185 (222)
Q Consensus 172 ~i~~~~~~~~~~~~ 185 (222)
+|.+.+.+...++.
T Consensus 164 ~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 164 CITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhh
Confidence 99999888766543
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=3.8e-33 Score=210.23 Aligned_cols=170 Identities=44% Similarity=0.821 Sum_probs=155.7
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..++.++|+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 45677999999999999999999999999887778888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++++.+++.+..|+..+........|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887667789999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 040481 172 IVIREIYSNV 181 (222)
Q Consensus 172 ~i~~~~~~~~ 181 (222)
+|++.+.+..
T Consensus 178 ~l~~~i~~~~ 187 (189)
T 2gf9_A 178 RLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887653
No 16
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.7e-33 Score=209.74 Aligned_cols=171 Identities=31% Similarity=0.478 Sum_probs=151.7
Q ss_pred CCCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhc
Q 040481 8 GGGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYR 87 (222)
Q Consensus 8 ~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 87 (222)
.......+.+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++
T Consensus 10 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 88 (183)
T 3kkq_A 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88 (183)
T ss_dssp ----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred cCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence 3344566789999999999999999999999988888888877666 677778899999999999999999999999999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccC-CCCC
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSAL-DSTN 165 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~ 165 (222)
.+|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++..++++++++||+ ++.|
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN 168 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence 999999999999999999999999888664 34678999999999998888899999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIYS 179 (222)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (222)
++++|++|++.+.+
T Consensus 169 v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988764
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=3.6e-33 Score=208.49 Aligned_cols=169 Identities=38% Similarity=0.716 Sum_probs=153.1
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
.....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45677999999999999999999999998888888888888888888889889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++++.+|+.+..|+..+.......+|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887767889999999999987778888899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 040481 172 IVIREIYSN 180 (222)
Q Consensus 172 ~i~~~~~~~ 180 (222)
+|++.+.+.
T Consensus 168 ~l~~~~~~~ 176 (181)
T 2efe_B 168 EIARRLPRV 176 (181)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhc
Confidence 998866543
No 18
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=5.2e-33 Score=205.16 Aligned_cols=165 Identities=41% Similarity=0.726 Sum_probs=151.8
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
+...++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45779999999999999999999999988887888888888888888898899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|||++++.+++.+..|+..+.......+|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876678999999999999877778888899999999999999999999999999999
Q ss_pred HHHHH
Q 040481 173 VIREI 177 (222)
Q Consensus 173 i~~~~ 177 (222)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 88754
No 19
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=213.13 Aligned_cols=174 Identities=45% Similarity=0.768 Sum_probs=146.6
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
....+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 98 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 98 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC
Confidence 34456789999999999999999999999888877888888888888888898889999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 99 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 99 AGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 178 (200)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988776678999999999999877778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 040481 170 FEIVIREIYSNVSR 183 (222)
Q Consensus 170 ~~~i~~~~~~~~~~ 183 (222)
|.+|++.+.++...
T Consensus 179 ~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 179 FLKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988876543
No 20
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.4e-33 Score=215.24 Aligned_cols=170 Identities=37% Similarity=0.678 Sum_probs=149.8
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
....++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-HcCCeEEEEccCCCCCHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSD----TTVARMLVGNKCDLESIRNVSTEEGKSLAE-AEGLFFMETSALDSTNVK 167 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~ 167 (222)
|+|||++++.+++.+..|+..+..... .++|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999988766542 468999999999997 45667778888887 678899999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 040481 168 SAFEIVIREIYSNVSR 183 (222)
Q Consensus 168 ~~~~~i~~~~~~~~~~ 183 (222)
++|++|++.+.+....
T Consensus 164 ~l~~~l~~~~~~~~~~ 179 (207)
T 1vg8_A 164 QAFQTIARNALKQETE 179 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998876543
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.7e-33 Score=208.01 Aligned_cols=167 Identities=40% Similarity=0.699 Sum_probs=145.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
.++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999988877888888888888888888889999999999999988899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|||++++.+++.+..|+..+........|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999887766567899999999999887788888999999999999999999999999999999
Q ss_pred HHHHHHH
Q 040481 173 VIREIYS 179 (222)
Q Consensus 173 i~~~~~~ 179 (222)
+++.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9987753
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.7e-33 Score=207.18 Aligned_cols=170 Identities=44% Similarity=0.723 Sum_probs=145.7
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
...+..++|+++|+++||||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34567899999999999999999999998875 45667888888877778899889999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998877678899999999999887788888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 170 FEIVIREIYSN 180 (222)
Q Consensus 170 ~~~i~~~~~~~ 180 (222)
|+++.+.+.+.
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999887644
No 23
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-34 Score=217.10 Aligned_cols=172 Identities=45% Similarity=0.802 Sum_probs=158.6
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
....+..+||+|+|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 34567889999999999999999999999988888888888888888888888888999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
|++|+|||++++.+|+.+..|+..+.......+|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999998877778999999999999887888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 040481 170 FEIVIREIYSNV 181 (222)
Q Consensus 170 ~~~i~~~~~~~~ 181 (222)
|++|++.+.+..
T Consensus 177 ~~~l~~~i~~~~ 188 (191)
T 3dz8_A 177 FERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999887654
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.3e-32 Score=203.20 Aligned_cols=165 Identities=38% Similarity=0.722 Sum_probs=152.7
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
..+.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||.+.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999998888888888888888888999899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|||++++.+++.+..|+..+.......+|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877778999999999999877788888999999999999999999999999999999
Q ss_pred HHHHH
Q 040481 173 VIREI 177 (222)
Q Consensus 173 i~~~~ 177 (222)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 25
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=211.42 Aligned_cols=170 Identities=38% Similarity=0.751 Sum_probs=148.0
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
.+.+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 45667899999999999999999999998887778888888888888889998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAE-GLFFMETSALDSTNVKSA 169 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~ 169 (222)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++... +++++++||++|.|++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999998877778999999999999877788888888888874 889999999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 170 FEIVIREIYSN 180 (222)
Q Consensus 170 ~~~i~~~~~~~ 180 (222)
|++|++.+.++
T Consensus 181 ~~~l~~~i~~~ 191 (192)
T 2il1_A 181 FLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=8.8e-33 Score=206.09 Aligned_cols=170 Identities=30% Similarity=0.486 Sum_probs=150.8
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
+....++|+++|++|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 4456799999999999999999999999887777777776655 667778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKT-HSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
+|+|||++++.+++.+..|+..+.. ....++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999999988744 345678999999999998877888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 040481 171 EIVIREIYSNVS 182 (222)
Q Consensus 171 ~~i~~~~~~~~~ 182 (222)
++|.+.+.+...
T Consensus 164 ~~l~~~~~~~~~ 175 (181)
T 2fn4_A 164 EQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc
Confidence 999998876554
No 27
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=9.1e-33 Score=203.88 Aligned_cols=163 Identities=42% Similarity=0.705 Sum_probs=149.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
+.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999998888888888888888888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC---CCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI---RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
|||++++.+++.+..|+..+......+.|+++|+||+|+.+. +.+..++...++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877678999999999999764 66788888999999999999999999999999999
Q ss_pred HHHHHH
Q 040481 172 IVIREI 177 (222)
Q Consensus 172 ~i~~~~ 177 (222)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 988754
No 28
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.4e-32 Score=207.13 Aligned_cols=172 Identities=37% Similarity=0.686 Sum_probs=153.2
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEE-EEEEEECCe---------EEEEEEEeCCCcchhhhh
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQ-TQSMEIDGK---------EVKAQIWDTAGQERFRAV 81 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~ 81 (222)
..++.++|+++|++|||||||+++|.+..+...+.++.+.++. ...+.+++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4567899999999999999999999998887777888887776 556666655 788999999999999999
Q ss_pred HHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEcc
Q 040481 82 TSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSA 160 (222)
Q Consensus 82 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (222)
+..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999998877654 67899999999999877788888899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Q 040481 161 LDSTNVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~~ 183 (222)
+++.|++++|++|.+.+.++..+
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988876544
No 29
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.9e-33 Score=205.97 Aligned_cols=165 Identities=45% Similarity=0.829 Sum_probs=144.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999998887788888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..+++..++...+++++++||++|.|++++|.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998877678899999999999 4456778888899999999999999999999999999999
Q ss_pred HHHHHH
Q 040481 175 REIYSN 180 (222)
Q Consensus 175 ~~~~~~ 180 (222)
+.+.++
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988754
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=7.5e-33 Score=204.08 Aligned_cols=165 Identities=36% Similarity=0.637 Sum_probs=150.6
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999888888888888888888888988899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|||++++.+++.+..|+..+.... ...|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999998887655 568999999999998777788888999999999999999999999999999999
Q ss_pred HHHHHH
Q 040481 174 IREIYS 179 (222)
Q Consensus 174 ~~~~~~ 179 (222)
.+.+++
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 987763
No 31
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.9e-33 Score=209.45 Aligned_cols=167 Identities=38% Similarity=0.702 Sum_probs=152.4
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 45678999999999999999999999998877788888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++++.+++.+..|+..+.......+|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999887767799999999999987777888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 040481 172 IVIREIY 178 (222)
Q Consensus 172 ~i~~~~~ 178 (222)
+|.+.+.
T Consensus 179 ~l~~~i~ 185 (192)
T 2fg5_A 179 GISRQIP 185 (192)
T ss_dssp HHHHTCC
T ss_pred HHHHHHH
Confidence 9988654
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.1e-32 Score=206.02 Aligned_cols=168 Identities=32% Similarity=0.436 Sum_probs=149.9
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
....++|+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 45679999999999999999999998888888888877766 66777889999999999999999998999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 999999999999999999988866543 5789999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 040481 172 IVIREIYSNV 181 (222)
Q Consensus 172 ~i~~~~~~~~ 181 (222)
++++.+.+..
T Consensus 162 ~l~~~~~~~~ 171 (181)
T 3t5g_A 162 RIILEAEKMD 171 (181)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHhc
Confidence 9999887554
No 33
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=7.4e-33 Score=206.14 Aligned_cols=166 Identities=41% Similarity=0.713 Sum_probs=151.5
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
+...++|+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 44569999999999999999999999988888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776677899999999999877788888889999999999999999999999999999
Q ss_pred HHHHHH
Q 040481 173 VIREIY 178 (222)
Q Consensus 173 i~~~~~ 178 (222)
|.+.+.
T Consensus 171 l~~~~~ 176 (179)
T 2y8e_A 171 VAAALP 176 (179)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 887653
No 34
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-32 Score=204.70 Aligned_cols=172 Identities=45% Similarity=0.777 Sum_probs=154.3
Q ss_pred CCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcC
Q 040481 9 GGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88 (222)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 88 (222)
........++|+++|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 34456678999999999999999999999999888888888888888888899999999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 167 (222)
+|++|+|||++++.++..+..|+..+..... ..+|+++|+||+|+.+ +.+..+++..++...+++++++||+++.|++
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999999999999877653 5689999999999954 5677788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 040481 168 SAFEIVIREIYSNV 181 (222)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (222)
++|++|++.+.+..
T Consensus 167 ~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 167 CAFEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887543
No 35
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-32 Score=209.57 Aligned_cols=173 Identities=43% Similarity=0.804 Sum_probs=152.7
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
..+....++|+++|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 34556679999999999999999999999988888888888888888888899889999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
|++|+|||++++.+|+.+..|+..+.......+|+++|+||+|+ ..+.+..+++..++...+++++++||++|.|++++
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998877677899999999999 44667778888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 040481 170 FEIVIREIYSNVSR 183 (222)
Q Consensus 170 ~~~i~~~~~~~~~~ 183 (222)
|.+|.+.+.+....
T Consensus 173 ~~~l~~~~~~~~~~ 186 (213)
T 3cph_A 173 FFTLAKLIQEKIDS 186 (213)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988776543
No 36
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=8.7e-33 Score=209.64 Aligned_cols=170 Identities=27% Similarity=0.369 Sum_probs=144.9
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh-hHHHhhcCCC
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA-VTSAYYRGAV 90 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d 90 (222)
+....++|+++|++|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|.+.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 456679999999999999999999976554434445556666777778899999999999999987764 7778899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
++|+|||++++.+|+.+..|+..+..... ..+|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999998877654 57899999999999877788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 040481 170 FEIVIREIYSNV 181 (222)
Q Consensus 170 ~~~i~~~~~~~~ 181 (222)
|.++++.+.+.+
T Consensus 179 f~~l~~~i~~~~ 190 (195)
T 3cbq_A 179 FEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999876543
No 37
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=202.16 Aligned_cols=167 Identities=31% Similarity=0.447 Sum_probs=137.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch--hhhhHHHhhcCCCEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER--FRAVTSAYYRGAVGA 92 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~v 92 (222)
+.++|+++|++|||||||+++|.+..+...+. +.+.+.....+.+++..+.+.+||+||++. +......+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46899999999999999999999887755433 456677777788899899999999999887 566777888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999999998887753 35789999999999988778888888889999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 040481 172 IVIREIYSNVS 182 (222)
Q Consensus 172 ~i~~~~~~~~~ 182 (222)
+|++.+..++.
T Consensus 162 ~l~~~~~~~~~ 172 (175)
T 2nzj_A 162 GVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhc
Confidence 99998876543
No 38
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=6.2e-32 Score=202.96 Aligned_cols=167 Identities=35% Similarity=0.562 Sum_probs=144.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
..++|+++|++|||||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 568999999999999999999999888777766654 4455667788889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+ .....+.+..++...+++++++||++|.|++++|.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999998887754 36789999999999974 5677888899999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 040481 174 IREIYSNVSR 183 (222)
Q Consensus 174 ~~~~~~~~~~ 183 (222)
.+.+.+...+
T Consensus 161 ~~~~~~~~~~ 170 (189)
T 4dsu_A 161 VREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 9988876544
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=4.2e-32 Score=201.93 Aligned_cols=167 Identities=41% Similarity=0.734 Sum_probs=147.0
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
.....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45678999999999999999999999998888888888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-HcCCeEEEEccCCCCCH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSD----TTVARMLVGNKCDLESIRNVSTEEGKSLAE-AEGLFFMETSALDSTNV 166 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i 166 (222)
+|+|||++++.+++.+..|+..+..... .++|+++|+||+|+. .+.+..+++.+++. ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988876543 678999999999997 46677888888888 56789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040481 167 KSAFEIVIREIYS 179 (222)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (222)
+++|+++++.+++
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 40
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.3e-32 Score=203.16 Aligned_cols=165 Identities=28% Similarity=0.383 Sum_probs=134.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh-hHHHhhcCCCEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA-VTSAYYRGAVGALI 94 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~vi~ 94 (222)
.+||+++|++|||||||+++|.+......+.++.+.+.....+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777666666667778888888899999999999999988865 67778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877654 478999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 040481 174 IREIYSN 180 (222)
Q Consensus 174 ~~~~~~~ 180 (222)
++.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9987764
No 41
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.3e-32 Score=203.95 Aligned_cols=167 Identities=19% Similarity=0.290 Sum_probs=143.5
Q ss_pred CCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcC
Q 040481 9 GGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88 (222)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 88 (222)
........+||+++|++|||||||+++|++..+...+.++ +.. ....+.+++..+.+.+||++|++.+. +++.
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGR-FKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEE-EEEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cce-EEEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence 3456677899999999999999999999999887777666 333 34777889999999999999998876 6788
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCC--cCCCCCHHHHHHHHHHcC-CeEEEEccCCCC
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLE--SIRNVSTEEGKSLAEAEG-LFFMETSALDST 164 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~ 164 (222)
+|++|+|||++++.+|+.+..|+..+..... ..+|+++|+||+|+. ..+.+..+++.+++...+ ++|+++||++|.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 9999999999999999999999999987754 578999999999994 467788889999999987 899999999999
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 040481 165 NVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 165 ~i~~~~~~i~~~~~~~~~ 182 (222)
||+++|.++++.+.+.+.
T Consensus 166 gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALRK 183 (184)
T ss_dssp THHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999998887643
No 42
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1e-32 Score=212.22 Aligned_cols=174 Identities=36% Similarity=0.712 Sum_probs=152.8
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCe----------EEEEEEEeCCCcchhh
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGK----------EVKAQIWDTAGQERFR 79 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~ 79 (222)
....++.++|+|+|+++||||||+++|++..+...+.++.+.++....+.+++. .+.+.+||+||++.+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 345577899999999999999999999998887767777777777777777765 7889999999999999
Q ss_pred hhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEE
Q 040481 80 AVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMET 158 (222)
Q Consensus 80 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (222)
..+..+++.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence 9999999999999999999999999999999988766554 678999999999998777888889999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhh
Q 040481 159 SALDSTNVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 159 sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (222)
||+++.|++++|++|++.+.++...
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988876544
No 43
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.4e-33 Score=210.44 Aligned_cols=168 Identities=42% Similarity=0.690 Sum_probs=139.2
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
......++|+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 34566799999999999999999999999887777788888888888888999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC------cCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE------SIRNVSTEEGKSLAEAEGLFFMETSALDST 164 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (222)
++|+|||++++.+++.+..|+..+.......+|+++|+||+|+. ..+.+..+++..++...+++++++||++|.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 99999999999999999999999988766778999999999996 346677888899999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIREIY 178 (222)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (222)
|++++|.+|++.+.
T Consensus 183 gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 183 NIVEAVLHLAREVK 196 (199)
T ss_dssp THHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=4.9e-33 Score=207.19 Aligned_cols=168 Identities=34% Similarity=0.524 Sum_probs=147.7
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECC-eEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDG-KEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..+.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34569999999999999999999999887766677878888888888876 67889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCC--CCCc-EEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSD--TTVA-RMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
+|+|||++++.+|+.+..|+..+..... ...| +++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999988876432 2345 789999999987777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 169 AFEIVIREIYSN 180 (222)
Q Consensus 169 ~~~~i~~~~~~~ 180 (222)
+|++|++.+.+.
T Consensus 163 l~~~l~~~~~~~ 174 (178)
T 2hxs_A 163 CFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999887644
No 45
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.7e-32 Score=205.58 Aligned_cols=168 Identities=40% Similarity=0.755 Sum_probs=148.1
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh-hhHHHhhcCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR-AVTSAYYRGA 89 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~ 89 (222)
.+....++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||.+.+. ..+..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 344567999999999999999999999998888888888888888888889988999999999999988 8899999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC---CC
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS---TN 165 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~---~~ 165 (222)
|++|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++ .|
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence 99999999999999999999999887765 467899999999999877788888999999999999999999999 99
Q ss_pred HHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIY 178 (222)
Q Consensus 166 i~~~~~~i~~~~~ 178 (222)
+.++|.+|++.+.
T Consensus 175 i~~l~~~l~~~i~ 187 (189)
T 1z06_A 175 VEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 46
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=205.57 Aligned_cols=166 Identities=29% Similarity=0.464 Sum_probs=141.9
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
.....+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+... ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 445679999999999999999999999988877788877665 345667888999999999999888765 578999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEcc-CCCCCHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSD---TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSA-LDSTNVK 167 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~~~~i~ 167 (222)
+|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++|| ++|.||+
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 9999999999999999999998877532 56899999999999877888889999999999999999999 8999999
Q ss_pred HHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYS 179 (222)
Q Consensus 168 ~~~~~i~~~~~~ 179 (222)
++|+.+++.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 47
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=4.4e-33 Score=212.43 Aligned_cols=171 Identities=27% Similarity=0.461 Sum_probs=115.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcC--cCCCCCCCccceeEEEEEEEECCe--EEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARN--EFNPHSKATIGVEFQTQSMEIDGK--EVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
...++|+++|++|||||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 67799999999999999999999998 666677777777777778888876 88999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCc-CCCCCHHHHHHHHHHcCCeEEEEccCC-CC
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSD---TTVARMLVGNKCDLES-IRNVSTEEGKSLAEAEGLFFMETSALD-ST 164 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~-~~ 164 (222)
|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+ .+.+..+++..++...+++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988766 6789999999999987 678888899999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHhhhh
Q 040481 165 NVKSAFEIVIREIYSNVSRK 184 (222)
Q Consensus 165 ~i~~~~~~i~~~~~~~~~~~ 184 (222)
|++++|++|++.+.+...++
T Consensus 178 gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888776543
No 48
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.8e-32 Score=210.87 Aligned_cols=175 Identities=25% Similarity=0.425 Sum_probs=144.9
Q ss_pred CCCCCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHh
Q 040481 6 EEGGGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAY 85 (222)
Q Consensus 6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 85 (222)
+.+...+....+||+++|+++||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+
T Consensus 17 q~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 95 (214)
T 3q3j_B 17 QGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLC 95 (214)
T ss_dssp ----------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGG
T ss_pred hccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHH
Confidence 334445667789999999999999999999999998888888877665 3456677788899999999999999999999
Q ss_pred hcCCCEEEEEEECCChhhHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcC
Q 040481 86 YRGAVGALIVYDITRRTTFDS-ISRWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEG 152 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~ 152 (222)
++.+|++|+|||++++.+|+. +..|+..+.... ..+|+++|+||+|+.+. +.+..+++..++...+
T Consensus 96 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 174 (214)
T 3q3j_B 96 YSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174 (214)
T ss_dssp CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence 999999999999999999999 689999988765 56899999999999753 6788899999999999
Q ss_pred C-eEEEEccCCCCC-HHHHHHHHHHHHHHHhh
Q 040481 153 L-FFMETSALDSTN-VKSAFEIVIREIYSNVS 182 (222)
Q Consensus 153 ~-~~~~~sa~~~~~-i~~~~~~i~~~~~~~~~ 182 (222)
+ +|++|||++|.| |+++|+++++.+.....
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 9 999999999998 99999999998875543
No 49
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=8.2e-32 Score=201.84 Aligned_cols=170 Identities=34% Similarity=0.518 Sum_probs=147.9
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
......++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3455679999999999999999999999888777777765544 445667888889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
++|+|||++++.+|+.+..|+..+..... ..+|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 99999999999999999999988877654 57899999999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 040481 170 FEIVIREIYSNV 181 (222)
Q Consensus 170 ~~~i~~~~~~~~ 181 (222)
|++|++.+.+++
T Consensus 172 ~~~l~~~i~~~~ 183 (187)
T 2a9k_A 172 FFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 50
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.5e-32 Score=206.80 Aligned_cols=169 Identities=28% Similarity=0.386 Sum_probs=139.9
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch-hhhhHHHhhc
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEF--NPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER-FRAVTSAYYR 87 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~ 87 (222)
......+||+|+|++|||||||+++|.+... ... .++++.++....+.+++..+.+.+||++|.+. +..+...+++
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 3455679999999999999999999997543 333 33456677777788899999999999999876 4556677788
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
.+|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++..+++++++|||++|.||
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999999998887643 356899999999999877778888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 167 KSAFEIVIREIYSN 180 (222)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (222)
+++|+++++.+...
T Consensus 191 ~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 191 KELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987543
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=9.4e-32 Score=197.91 Aligned_cols=164 Identities=35% Similarity=0.544 Sum_probs=142.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
..++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 358999999999999999999999887777777766554 3456678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988877654 578999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHH
Q 040481 174 IREIYS 179 (222)
Q Consensus 174 ~~~~~~ 179 (222)
++.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 987753
No 52
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=208.23 Aligned_cols=170 Identities=31% Similarity=0.455 Sum_probs=144.6
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
.+....+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 4556789999999999999999999999998877778777666 556666777888999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999877643 56899999999999888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 040481 170 FEIVIREIYSNV 181 (222)
Q Consensus 170 ~~~i~~~~~~~~ 181 (222)
|.+|++.+.+..
T Consensus 178 ~~~l~~~i~~~~ 189 (201)
T 3oes_A 178 FTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhh
Confidence 999999887654
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.9e-31 Score=202.42 Aligned_cols=166 Identities=37% Similarity=0.667 Sum_probs=146.9
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeE----------------------------
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKE---------------------------- 64 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 64 (222)
.+..++|+++|+++||||||+++|++..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3457999999999999999999999998887788888888887777777655
Q ss_pred ---------EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 65 ---------VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 65 ---------~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
+.+.+||+||++.+...+..+++.+|++|+|||++++.+++.+..|+..+..... .|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence 8899999999999999999999999999999999999999999999998877654 89999999999 55
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHHh
Q 040481 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 181 (222)
.+.+..+++.+++...+++++++||++|.|++++|++|++.+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 5678888999999999999999999999999999999999887653
No 54
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-32 Score=210.33 Aligned_cols=168 Identities=29% Similarity=0.561 Sum_probs=142.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4579999999999999999999999888777777776554 345667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--------CCHHHHHHHHHHcCC-eEEEEccCCC
Q 040481 94 IVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESIRN--------VSTEEGKSLAEAEGL-FFMETSALDS 163 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa~~~ 163 (222)
+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+... +..+++.+++...++ +++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999996 7999887765 3689999999999965433 477888889999886 8999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q 040481 164 TNVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~~~~~~ 183 (222)
.|++++|+++++.+.+...+
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp TTHHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHHhhhhhh
Confidence 99999999999988766443
No 55
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=204.15 Aligned_cols=172 Identities=30% Similarity=0.500 Sum_probs=138.9
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
.......++|+++|++|||||||+++|.+..+...+.++++..+ ...+.+++..+.+.+||+||++.+...+..++..+
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 34566789999999999999999999999887777777765444 45667788889999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcCC-eE
Q 040481 90 VGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLES------------IRNVSTEEGKSLAEAEGL-FF 155 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~ 155 (222)
|++|+|||++++.+|+.+. .|+..+..... ++|+++|+||+|+.+ .+.+..+++..++...++ ++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999996 79988877653 789999999999975 356778888999998887 89
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHhhh
Q 040481 156 METSALDSTNVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 156 ~~~sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (222)
+++||++|.|++++|+++++.+.+...+
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 9999999999999999999988876543
No 56
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=7.6e-32 Score=198.55 Aligned_cols=163 Identities=31% Similarity=0.436 Sum_probs=123.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|++|||||||+++|.+...... .++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 57999999999999999999987665432 33434444 35567788999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887654 36789999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 040481 175 REIYSN 180 (222)
Q Consensus 175 ~~~~~~ 180 (222)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988754
No 57
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-32 Score=206.71 Aligned_cols=163 Identities=28% Similarity=0.412 Sum_probs=140.7
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|+++||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45689999999999999999999998887777777664443 44567888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999888877766432 4689999999999975 56777888889999999999999999999999999
Q ss_pred HHHHHHH
Q 040481 172 IVIREIY 178 (222)
Q Consensus 172 ~i~~~~~ 178 (222)
+|++.+.
T Consensus 164 ~l~~~~~ 170 (199)
T 2gf0_A 164 ELLTLET 170 (199)
T ss_dssp HHHHHCS
T ss_pred HHHHHHh
Confidence 9988654
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=3.8e-32 Score=202.80 Aligned_cols=169 Identities=38% Similarity=0.681 Sum_probs=135.1
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999998888888888888888877776 566889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCc-CCCCCHHHHHHHHH-HcCCeEEEEccCCCCC
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSD----TTVARMLVGNKCDLES-IRNVSTEEGKSLAE-AEGLFFMETSALDSTN 165 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~ 165 (222)
+|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ .+.+..+++.+++. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988866543 6789999999999954 45567788888888 5678999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 040481 166 VKSAFEIVIREIYSNV 181 (222)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (222)
++++|+++++.+.++.
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887654
No 59
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.2e-31 Score=202.72 Aligned_cols=168 Identities=31% Similarity=0.539 Sum_probs=146.9
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
......+||+++|++|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 34566799999999999999999999999987777788766655 35667888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC--CCCCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 040481 91 GALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESI--RNVSTEEGKSLAEAEGLF-FMETSALDSTNV 166 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i 166 (222)
++|+|||++++.+|+.+ ..|+..+.... ..+|+++|+||+|+.+. +.+..+++.+++...++. ++++||++|.|+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 99999999999999997 77888887654 56899999999999753 678888999999999998 999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 167 KSAFEIVIREIYSN 180 (222)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (222)
+++|+++++.+.++
T Consensus 176 ~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 176 NEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=7.9e-32 Score=198.38 Aligned_cols=163 Identities=33% Similarity=0.545 Sum_probs=143.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
+.++|+++|++|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999998887777777665543 456677788899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAE-GLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++... +++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988886653 357899999999999887788888899999887 899999999999999999999
Q ss_pred HHHHHH
Q 040481 173 VIREIY 178 (222)
Q Consensus 173 i~~~~~ 178 (222)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988763
No 61
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.7e-31 Score=199.00 Aligned_cols=163 Identities=21% Similarity=0.334 Sum_probs=137.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
.+.+||+++|++|||||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+||+||++. ..+++.+|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 456999999999999999999999988876 566666443 56677788889999999999876 45778899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhc---CCCCCcEEEEEeCCCCC--cCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTH---SDTTVARMLVGNKCDLE--SIRNVSTEEGKSLAEAE-GLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+|+.+..|+..+... ...++|+++|+||+|+. ..+.+..+++.+++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 999999999999999976555443 33678999999999994 45678888888888876 6899999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 040481 168 SAFEIVIREIYSNVSR 183 (222)
Q Consensus 168 ~~~~~i~~~~~~~~~~ 183 (222)
++|+++++.+.+.+..
T Consensus 158 ~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988876543
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.7e-31 Score=196.34 Aligned_cols=163 Identities=34% Similarity=0.526 Sum_probs=144.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
..++|+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 35899999999999999999999988877777765543 35667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999999888866543 578999999999998777888888899999999999999999999999999999
Q ss_pred HHHHH
Q 040481 174 IREIY 178 (222)
Q Consensus 174 ~~~~~ 178 (222)
++.+.
T Consensus 161 ~~~~~ 165 (167)
T 1kao_A 161 VRQMN 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-31 Score=201.92 Aligned_cols=167 Identities=34% Similarity=0.448 Sum_probs=146.5
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
....++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||.+. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 34569999999999999999999999988777777776554 45567788889999999999988 77888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCC-CHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDST-NVKSAF 170 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~ 170 (222)
|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999998887754 3578999999999998777888899999999999999999999999 999999
Q ss_pred HHHHHHHHHHh
Q 040481 171 EIVIREIYSNV 181 (222)
Q Consensus 171 ~~i~~~~~~~~ 181 (222)
++|++.+.+..
T Consensus 183 ~~l~~~i~~~~ 193 (196)
T 2atv_A 183 YELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999887654
No 64
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-31 Score=200.20 Aligned_cols=166 Identities=30% Similarity=0.510 Sum_probs=145.1
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
+....++|+++|+++||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 456779999999999999999999999988777777766554 4456677788899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEE
Q 040481 92 ALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFME 157 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~ 157 (222)
+|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+. +.+..+++.+++...++ ++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999997 7998887764 36899999999999753 46778889999999987 8999
Q ss_pred EccCCCCCHHHHHHHHHHHHHH
Q 040481 158 TSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 158 ~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
+||++|.|++++|++|++.+++
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999987763
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.1e-30 Score=196.68 Aligned_cols=171 Identities=35% Similarity=0.545 Sum_probs=135.9
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
+....++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||.+.+...+..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 345669999999999999999999999887766666655443 4566778888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
+++|||+++..+++.+..|+..+..... .++|+++|+||+|+.+ +....+++.+++...+++++++||+++.|++++|
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988876543 5689999999999976 5677888899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 040481 171 EIVIREIYSNVSRK 184 (222)
Q Consensus 171 ~~i~~~~~~~~~~~ 184 (222)
++|++.+.+.+.++
T Consensus 175 ~~l~~~~~~~~~~~ 188 (190)
T 3con_A 175 YTLVREIRQYRMKK 188 (190)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhh
Confidence 99999888765543
No 66
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.98 E-value=2.1e-31 Score=199.90 Aligned_cols=166 Identities=31% Similarity=0.540 Sum_probs=142.3
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
.....++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 345679999999999999999999999988777777776555 3456677888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcC-CeEEE
Q 040481 92 ALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEG-LFFME 157 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~ 157 (222)
+|+|||++++.+|+.+ ..|+..+.... ...|+++|+||+|+.+. +.+..+++..++..++ ++|++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999998 78988887654 46899999999999742 5678888999999887 78999
Q ss_pred EccC-CCCCHHHHHHHHHHHHHH
Q 040481 158 TSAL-DSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 158 ~sa~-~~~~i~~~~~~i~~~~~~ 179 (222)
+||+ ++.|++++|+.+++.+++
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999987763
No 67
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=4e-31 Score=198.00 Aligned_cols=165 Identities=30% Similarity=0.537 Sum_probs=143.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3568999999999999999999999888777777765444 455677888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 040481 94 IVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFMETS 159 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 159 (222)
+|||++++.+|+.+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++...++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999996 79888877654 7899999999998653 46777888889999987 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 040481 160 ALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~ 180 (222)
|++|.|++++|+++++.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999887644
No 68
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.98 E-value=3.9e-31 Score=203.28 Aligned_cols=168 Identities=29% Similarity=0.502 Sum_probs=124.5
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
....++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34579999999999999999999999887777777765443 45567788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 040481 93 LIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFMET 158 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 158 (222)
|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..+++..++...++ +++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999996 7988887654 46899999999999754 26777888899999997 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhh
Q 040481 159 SALDSTNVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 159 sa~~~~~i~~~~~~i~~~~~~~~~ 182 (222)
||++|.|++++|++|++.+++...
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC--
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999998886543
No 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=1.2e-31 Score=206.43 Aligned_cols=173 Identities=27% Similarity=0.472 Sum_probs=146.4
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID-GKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
......+||+++|++|||||||+++|++..+...+.++.+.......+... +..+.+.+||+||++.+...+..++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 345677999999999999999999999888777667777766666655454 3448899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+.+..++...+++++++||++|.|++++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 99999999999999999999999998877777899999999999887788888888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 040481 170 FEIVIREIYSNVSR 183 (222)
Q Consensus 170 ~~~i~~~~~~~~~~ 183 (222)
|.+|.+.+.+....
T Consensus 166 ~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 166 FLHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHHHHCCTTC
T ss_pred HHHHHHHHhccccc
Confidence 99999988765443
No 70
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.98 E-value=5.7e-31 Score=201.18 Aligned_cols=166 Identities=31% Similarity=0.544 Sum_probs=142.5
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
.....+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 345679999999999999999999999988777777776655 3456667788999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcC-CeEEE
Q 040481 92 ALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLES------------IRNVSTEEGKSLAEAEG-LFFME 157 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (222)
+|+|||++++.+|+.+ ..|+..+.... ...|+++|+||+|+.+ .+.+..+++.+++...+ ++|++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 181 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999 78988887764 4689999999999974 25677888899998887 78999
Q ss_pred EccC-CCCCHHHHHHHHHHHHHH
Q 040481 158 TSAL-DSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 158 ~sa~-~~~~i~~~~~~i~~~~~~ 179 (222)
+||+ ++.|++++|..+++.++.
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHhh
Confidence 9999 689999999999988764
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=3.9e-30 Score=188.71 Aligned_cols=162 Identities=35% Similarity=0.570 Sum_probs=141.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 57999999999999999999999887766666655433 45566788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +....++..+++...+++++++||++|.|++++|.++.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876543 4689999999999976 56777888899999999999999999999999999999
Q ss_pred HHHHH
Q 040481 175 REIYS 179 (222)
Q Consensus 175 ~~~~~ 179 (222)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87753
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=3.9e-30 Score=195.73 Aligned_cols=164 Identities=31% Similarity=0.518 Sum_probs=143.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
....+||+++|++|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 356789999999999999999999999887777777766654 3466788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 040481 93 LIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFMET 158 (222)
Q Consensus 93 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 158 (222)
|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...++ +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999999 67888887754 46899999999999754 45777888899999888 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q 040481 159 SALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 159 sa~~~~~i~~~~~~i~~~~~ 178 (222)
||++|.|++++|++|++.++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998775
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.2e-30 Score=192.83 Aligned_cols=162 Identities=28% Similarity=0.432 Sum_probs=140.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
..++|+++|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 3589999999999999999999998877666676654443 445667888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999888887766532 46899999999999877778888888899999999999999999999999999
Q ss_pred HHHHH
Q 040481 173 VIREI 177 (222)
Q Consensus 173 i~~~~ 177 (222)
|++.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 88754
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.1e-33 Score=213.43 Aligned_cols=167 Identities=47% Similarity=0.847 Sum_probs=142.4
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
.+..+||+++|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 46779999999999999999999999888777778888888888898999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|||++++.+|+.+..|+..+.......+|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998887778999999999999877777777788899999999999999999999999999
Q ss_pred HHHHHHH
Q 040481 173 VIREIYS 179 (222)
Q Consensus 173 i~~~~~~ 179 (222)
|++.+.+
T Consensus 190 l~~~l~~ 196 (199)
T 3l0i_B 190 MAAEIKK 196 (199)
T ss_dssp HTTTTTT
T ss_pred HHHHHHH
Confidence 8876643
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=5.2e-30 Score=193.88 Aligned_cols=167 Identities=28% Similarity=0.394 Sum_probs=136.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch-hhhhHHHhhcCCC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEF--NPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER-FRAVTSAYYRGAV 90 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 90 (222)
...+||+++|++|||||||+++|.+... ...+ ++++.+.....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 4568999999999999999999986432 3333 3456666677788899999999999999766 4556677888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++|++|||++|.||+++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988776653 357899999999999876778888888888889999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 040481 170 FEIVIREIYSNV 181 (222)
Q Consensus 170 ~~~i~~~~~~~~ 181 (222)
|+++++.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999876443
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=4.9e-31 Score=199.30 Aligned_cols=168 Identities=22% Similarity=0.287 Sum_probs=137.5
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------CCccceeEEEEEE-EECCeEEEEEEEeCCCcchh
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS-----------KATIGVEFQTQSM-EIDGKEVKAQIWDTAGQERF 78 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~ 78 (222)
......+||+++|++|||||||++.+.+.. ...+ .++.+.++....+ .+++..+.+.+||+||++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 356778999999999999999997776543 3332 2343444433333 45677889999999999999
Q ss_pred hhhHHHhhcCCCEEEEEEECC------ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC
Q 040481 79 RAVTSAYYRGAVGALIVYDIT------RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG 152 (222)
Q Consensus 79 ~~~~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 152 (222)
...+..+++.+|++|+|||++ +..+|..+..|+..+. ....++|+++|+||+|+.+ .+..+++.+++...+
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEG 164 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcC
Confidence 999999999999999999999 5677888888888873 2346789999999999975 377888999999999
Q ss_pred C-eEEEEccCCCCCHHHHHHHHHHHHHHHhh
Q 040481 153 L-FFMETSALDSTNVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 153 ~-~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 182 (222)
+ +++++||++|.|++++|++|++.+.+...
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 9 99999999999999999999998887654
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.2e-30 Score=196.42 Aligned_cols=165 Identities=30% Similarity=0.507 Sum_probs=138.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 456899999999999999999999998877777776655543 3667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 040481 94 IVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFMETS 159 (222)
Q Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 159 (222)
+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++...++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999999 67888887654 46899999999999754 45777888889999887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 040481 160 ALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~ 180 (222)
|++|.|++++|++|++.+++.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987743
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.5e-31 Score=199.88 Aligned_cols=163 Identities=32% Similarity=0.577 Sum_probs=125.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45689999999999999999999998877666666553332 23445666788889999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCCC----------CCHHHHHHHHHHcCC-eEEEEccC
Q 040481 94 IVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESIRN----------VSTEEGKSLAEAEGL-FFMETSAL 161 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~ 161 (222)
+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+... +..+++.+++...++ +++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999997 7998887765 3689999999999865433 477788889998886 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 040481 162 DSTNVKSAFEIVIREIY 178 (222)
Q Consensus 162 ~~~~i~~~~~~i~~~~~ 178 (222)
+|.|++++|+++++.++
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
No 79
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=2.8e-29 Score=190.73 Aligned_cols=169 Identities=63% Similarity=1.037 Sum_probs=150.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
++.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45789999999999999999999999888888888888888888889999999999999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|+|+.+..+++.+..|+..+........|+++++||.|+.+......++++.++...++.++++||+++.|+.++|+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999998889988876655678999999999998777788888999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 040481 174 IREIYSNVS 182 (222)
Q Consensus 174 ~~~~~~~~~ 182 (222)
.+.+.+...
T Consensus 163 ~~~~~~~~~ 171 (199)
T 2f9l_A 163 LTEIYRIVS 171 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998876543
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=9.4e-31 Score=201.92 Aligned_cols=169 Identities=28% Similarity=0.532 Sum_probs=148.6
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
......+||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 35567799999999999999999998887777777788888888888889999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+... . .+...++...+++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999998765 4689999999999975332 2 25566788889999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 040481 171 EIVIREIYSNVS 182 (222)
Q Consensus 171 ~~i~~~~~~~~~ 182 (222)
.+|.+.+.....
T Consensus 167 ~~l~~~l~~~~~ 178 (221)
T 3gj0_A 167 LWLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHHTCTT
T ss_pred HHHHHHHHhCcc
Confidence 999998876543
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=1.5e-30 Score=197.07 Aligned_cols=168 Identities=18% Similarity=0.316 Sum_probs=129.0
Q ss_pred CCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhc
Q 040481 9 GGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYR 87 (222)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 87 (222)
...+....++|+|+|+++||||||+++|++..+.. .+.++.+... ..+. ...+.+.+||+||++.+...+..+++
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFE--KGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEE--ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEE--eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 44567778999999999999999999999998877 6677776433 3333 34567889999999999999999999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHhcCC--------CCCcEEEEEeCCCCCcCCCCCHHHHH-H-----HHHHcCC
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKTHSD--------TTVARMLVGNKCDLESIRNVSTEEGK-S-----LAEAEGL 153 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~iiv~nK~Dl~~~~~~~~~~~~-~-----~~~~~~~ 153 (222)
.+|++|+|||++++.+|+.+..|+..+..... ..+|+++|+||+|+.+... .++.. . ++...++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCE
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCee
Confidence 99999999999999999999999888766421 2689999999999975422 22221 1 1144678
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHhh
Q 040481 154 FFMETSALDSTNVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 154 ~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 182 (222)
+++++||++|.||+++|++|++.+.+...
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999998876643
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=3.4e-30 Score=196.58 Aligned_cols=163 Identities=29% Similarity=0.530 Sum_probs=138.0
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
....+||+++|++|||||||+++|.++.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35669999999999999999999999888777777754 44455666788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCC------------CCCHHHHHHHHHHcCC-eEEEE
Q 040481 93 LIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESIR------------NVSTEEGKSLAEAEGL-FFMET 158 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 158 (222)
|+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..++...++ +++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999996 7988887765 568999999999986543 3777888889999886 59999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 040481 159 SALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 159 sa~~~~~i~~~~~~i~~~~ 177 (222)
||++|.|++++|+++++.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=2.1e-28 Score=184.80 Aligned_cols=165 Identities=63% Similarity=1.053 Sum_probs=149.5
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
.+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 45679999999999999999999999988888889989898888999999999999999999999888888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
++|+|+.+..+|+.+..|+..+........|+++++||.|+.+......++++.++...++.++++||+++.++.++|+.
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999888988877655566899999999999877777888899999999999999999999999999999
Q ss_pred HHHHH
Q 040481 173 VIREI 177 (222)
Q Consensus 173 i~~~~ 177 (222)
+.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=8e-30 Score=191.99 Aligned_cols=160 Identities=20% Similarity=0.356 Sum_probs=127.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||+++|.+..+...+.++.+.++.. +... .+.+.+||+||++.+...+..+++.+|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 456899999999999999999999988877777777765543 3333 467889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+. ...++..+... ..+++++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999999988876543 267899999999999753 22222222211 235679999999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYS 179 (222)
Q Consensus 168 ~~~~~i~~~~~~ 179 (222)
++|++|++.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999886543
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=2.8e-29 Score=185.50 Aligned_cols=159 Identities=23% Similarity=0.325 Sum_probs=125.8
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|+|||||+++|.+..+.. +.++.+ .....+.++ .+.+.+||+||++.+...+..+++.+|++|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 346899999999999999999999887643 445544 344455555 466889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHH-----HHHcCCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSL-----AEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.. ...+.... +...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999988887776543 2568999999999997532 22222211 22346689999999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYS 179 (222)
Q Consensus 168 ~~~~~i~~~~~~ 179 (222)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=6.2e-30 Score=187.90 Aligned_cols=156 Identities=19% Similarity=0.365 Sum_probs=121.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||+++|.+..+.. +.|+.+. ....+.. ..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 4555552 3333333 3467889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLA-----EAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999999988876542 356899999999999753 2222222211 1234679999999999999999
Q ss_pred HHHHHHHHH
Q 040481 171 EIVIREIYS 179 (222)
Q Consensus 171 ~~i~~~~~~ 179 (222)
+++.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999887653
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=184.63 Aligned_cols=162 Identities=19% Similarity=0.333 Sum_probs=128.5
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCc-CCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNE-FNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
.....++|+++|++|||||||+++|.+.. +...+.++.+ +....+.+++ +.+.+||+||++.+...+..+++.+|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34456899999999999999999999887 4455556555 4445555554 67889999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCC
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSD---TTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALD 162 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~ 162 (222)
++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+ ....+++.++.. ..+++++++||++
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999999999999999888876543 4789999999999974 344555555553 2357899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIREIYS 179 (222)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (222)
|.|++++|++|.+.+.+
T Consensus 171 ~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999886643
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=6.2e-29 Score=188.78 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=121.5
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34579999999999999999999987764 344555443 34555666 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----------------cCCeE
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEA-----------------EGLFF 155 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 155 (222)
+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.. .+..+++.+++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999998886653 35789999999999975 5666777766552 34679
Q ss_pred EEEccCCCCCHHHHHHHHHHH
Q 040481 156 METSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 156 ~~~sa~~~~~i~~~~~~i~~~ 176 (222)
++|||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998753
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.6e-28 Score=185.33 Aligned_cols=156 Identities=21% Similarity=0.247 Sum_probs=126.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
.+.++|+++|++|||||||+++|.+..+. .+.++.+. ....+.+++ +.+.+||+||++.+...+..+++.+|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 44579999999999999999999988764 34455544 345566666 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH------------cCCeEEEEcc
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEA------------EGLFFMETSA 160 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~sa 160 (222)
+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++.++... .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999998886543 35689999999999975 4556666655432 3567999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 040481 161 LDSTNVKSAFEIVIRE 176 (222)
Q Consensus 161 ~~~~~i~~~~~~i~~~ 176 (222)
++|.|++++|+++++.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=3e-28 Score=182.76 Aligned_cols=160 Identities=21% Similarity=0.361 Sum_probs=128.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||+++|.+.. ...+.++.+. ....+.+++ +.+.+||+||++.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887 5556666653 344455554 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999999888776642 3568999999999997532 2333332222 245689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYSN 180 (222)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (222)
++|+++.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877643
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=2.9e-29 Score=189.65 Aligned_cols=158 Identities=20% Similarity=0.366 Sum_probs=119.0
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||+++|.++.+.. +.++.+ +....+...+ +.+.+||+||.+.+...+..+++.+|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 456899999999999999999998877542 344444 3444444443 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLA-----EAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+.. ...+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999999988876543 356899999999999753 2222222211 1234579999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 168 SAFEIVIREIY 178 (222)
Q Consensus 168 ~~~~~i~~~~~ 178 (222)
++|++|++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988664
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=4.3e-28 Score=181.52 Aligned_cols=159 Identities=23% Similarity=0.345 Sum_probs=123.5
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||+++|.+..+ ..+.++.+. ....+.++ .+.+.+||+||++.+...+..+++.+|++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4568999999999999999999998754 233455553 34445555 467889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLESIRNVSTEEGKSLA-----EAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+.. ..++..+.. ...+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999999888877554 23568999999999997543 223332221 1235679999999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYS 179 (222)
Q Consensus 168 ~~~~~i~~~~~~ 179 (222)
++|+++++.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.2e-28 Score=181.30 Aligned_cols=160 Identities=21% Similarity=0.358 Sum_probs=123.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 34689999999999999999999987765 444555433 33444554 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999998887653 25689999999999974 233444443332 245689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYSN 180 (222)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (222)
++|++|++.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 167 QGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876543
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=2.4e-28 Score=182.69 Aligned_cols=160 Identities=21% Similarity=0.348 Sum_probs=123.6
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
.......++|+++|++|||||||+++|.+..+ ..+.++.+... ..+.+++ +.+.+||+||++.+...+..+++.+
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 34555679999999999999999999998876 33445555433 3444554 6788999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCC
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDS 163 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~ 163 (222)
|++|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 99999999999999999999888776643 366899999999999752 33444443332 23568999999999
Q ss_pred CCHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIRE 176 (222)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (222)
.|++++|++|++.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999998753
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.3e-27 Score=194.65 Aligned_cols=163 Identities=30% Similarity=0.533 Sum_probs=142.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
..++|+++|++|+|||||++++.++.+...+.++++..+ ...+.+++..+.+.+||+||.+.+...+..+++.+|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999888777777765444 4556778889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEEcc
Q 040481 95 VYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFMETSA 160 (222)
Q Consensus 95 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa 160 (222)
|||++++.+|+.+. .|+..+..... ++|+++|+||+|+.+. +.+..+++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999986 78888877654 7899999999998643 56788889999999997 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 040481 161 LDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (222)
++|.|++++|..+++.++.
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999987764
No 96
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=3.5e-29 Score=187.89 Aligned_cols=164 Identities=21% Similarity=0.420 Sum_probs=121.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--cCCCCCCCccceeEEEEEEEE---CCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARN--EFNPHSKATIGVEFQTQSMEI---DGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
.+||+++|++|||||||+++|.+. .+...+.++.+.++....+.. ++..+.+.+||++|.+.+...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 344556677777766555433 335678899999999999888999999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC---HHHHHHHHHHcCCe----EEEEccCC
Q 040481 91 GALIVYDITRR-TTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS---TEEGKSLAEAEGLF----FMETSALD 162 (222)
Q Consensus 91 ~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~sa~~ 162 (222)
++++|||++++ .+|+.+..|+..+.... .+.|+++|+||+|+.+...+. .+....++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999998 47999999999887654 368999999999997543322 23345556566776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHH
Q 040481 163 ST-NVKSAFEIVIREIYSN 180 (222)
Q Consensus 163 ~~-~i~~~~~~i~~~~~~~ 180 (222)
+. ++.++++.+.+.+...
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 97 9999999888766543
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=4.6e-29 Score=189.08 Aligned_cols=166 Identities=21% Similarity=0.218 Sum_probs=121.0
Q ss_pred CCCCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEE--EEEE-CCeEEEEEEEeCCCcchhhhhH-
Q 040481 7 EGGGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQ--SMEI-DGKEVKAQIWDTAGQERFRAVT- 82 (222)
Q Consensus 7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~D~~G~~~~~~~~- 82 (222)
.....+....+||+++|++|||||||++++.+.... . ++.+.+.... ...+ ++..+.+.+||+||++.+....
T Consensus 11 ~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 87 (196)
T 3llu_A 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF 87 (196)
T ss_dssp ---------CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC
T ss_pred CCCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh
Confidence 334466777899999999999999999988774322 2 2323222222 2223 2556789999999999987766
Q ss_pred --HHhhcCCCEEEEEEECCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc-------CCCCCHHHHHHHHH--
Q 040481 83 --SAYYRGAVGALIVYDITRR--TTFDSISRWLDELKTHSDTTVARMLVGNKCDLES-------IRNVSTEEGKSLAE-- 149 (222)
Q Consensus 83 --~~~~~~~d~vi~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-------~~~~~~~~~~~~~~-- 149 (222)
..+++.+|++|+|||++++ +++..+..|+..+.... .++|+++|+||+|+.+ .+.+..++..+++.
T Consensus 88 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (196)
T 3llu_A 88 DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG 166 (196)
T ss_dssp CHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence 8999999999999999997 66777777777764433 4689999999999864 23455556677777
Q ss_pred --HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 150 --AEGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 150 --~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
..+++|+++||++ .||+++|..+++.+
T Consensus 167 ~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 167 LEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6788999999999 99999999998764
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.3e-30 Score=198.64 Aligned_cols=162 Identities=30% Similarity=0.547 Sum_probs=135.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4568999999999999999999998887666666654333 344556777788899999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCC------------CCCHHHHHHHHHHcCC-eEEEEc
Q 040481 94 IVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESIR------------NVSTEEGKSLAEAEGL-FFMETS 159 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 159 (222)
+|||++++.+|+.+. .|+..+..... ++|+++|+||+|+.+.. .+..+++..++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999986 78888776543 68999999999997533 4555667778888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 040481 160 ALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 160 a~~~~~i~~~~~~i~~~~ 177 (222)
|++|.|++++|++|++.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999988765
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1e-27 Score=179.22 Aligned_cols=160 Identities=22% Similarity=0.353 Sum_probs=124.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||+++|.++.+ ..+.++.+.. ...+.+++ +.+.+||+||.+.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998776 3444555533 34444554 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEA-----EGLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+.... .+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999988887654 367899999999999753 333444333221 24579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYSN 180 (222)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (222)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=7.1e-29 Score=186.69 Aligned_cols=160 Identities=17% Similarity=0.289 Sum_probs=125.0
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|+++||||||+++|.+..+.. +.++.+. ....+.++ .+.+.+||+||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 356899999999999999999998776543 3455553 33344445 367889999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHH-----HHHcCCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSL-----AEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+. +...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988887776543 3578999999999997532 22222221 12235679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYSN 180 (222)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (222)
++|+++.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=4.9e-27 Score=173.14 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=115.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh------hhHHHhhc--
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR------AVTSAYYR-- 87 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-- 87 (222)
.++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||...+. .....++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998776555555555555555566665 468899999987663 34455664
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 167 (222)
.+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+...+.+.. +...++..++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999988643 3457766654 3589999999999865444433 3567888889999999999999999
Q ss_pred HHHHHHHHHH
Q 040481 168 SAFEIVIREI 177 (222)
Q Consensus 168 ~~~~~i~~~~ 177 (222)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.6e-26 Score=179.14 Aligned_cols=167 Identities=18% Similarity=0.141 Sum_probs=120.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCc------chh---hhhHHH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ------ERF---RAVTSA 84 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~~~ 84 (222)
...++|+++|++|||||||+++|++..+.....+..+.+.........+ ..+.+||+||. +.. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4568999999999999999999998876433333334444444444444 56889999998 331 122345
Q ss_pred hhcCCCEEEEEEECCChhhHHH--HHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH---HHHHHHHHcC--CeEEE
Q 040481 85 YYRGAVGALIVYDITRRTTFDS--ISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTE---EGKSLAEAEG--LFFME 157 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~ 157 (222)
++..+|++|+|||++++.+|+. ...|+..+.... ...|+++|+||+|+.+.+.+..+ ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5788999999999999887652 245666665532 36899999999999876666654 4556677776 89999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHhhh
Q 040481 158 TSALDSTNVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 158 ~sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (222)
+||++|.||+++|.+|++.+.+.+..
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988776543
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=8.2e-27 Score=173.39 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=119.9
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
.....++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++. .+.+||+||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 3456689999999999999999999998887766666665665556666664 45699999999998888888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-------C--CeEEEEccCC
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAE-------G--LFFMETSALD 162 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~sa~~ 162 (222)
+|+|||++++..... ..++..+ ...++|+++|+||+|+.+. ..+......... + ++++++||++
T Consensus 82 ~i~v~d~~~~~~~~~-~~~l~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (178)
T 2lkc_A 82 VILVVAADDGVMPQT-VEAINHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKT 154 (178)
T ss_dssp EEEEEETTCCCCHHH-HHHHHHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSS
T ss_pred EEEEEECCCCCcHHH-HHHHHHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCC
Confidence 999999988433111 1222222 2346899999999999753 223333222222 1 5799999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 040481 163 STNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~ 181 (222)
|.|++++|++|++.+...+
T Consensus 155 ~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 155 KEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhhhhhc
Confidence 9999999999988766543
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.1e-28 Score=192.00 Aligned_cols=168 Identities=25% Similarity=0.343 Sum_probs=122.4
Q ss_pred CCCCceeeEEEEEEcCC---------CCCHHHHHHHHhc---CcCCCCCCCcc-ceeEEEEE--------------EEEC
Q 040481 9 GGGGEEYLFKIVIIGDS---------AVGKSNLLSRYAR---NEFNPHSKATI-GVEFQTQS--------------MEID 61 (222)
Q Consensus 9 ~~~~~~~~~~i~i~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~ 61 (222)
........+||+++|++ |||||||+++|.+ ..+...+.+++ +.++.... ..++
T Consensus 12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (255)
T 3c5h_A 12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED 91 (255)
T ss_dssp TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence 34456677999999999 9999999999998 45555555553 33322111 1235
Q ss_pred CeEEEEEEEe-----------------------CCCcchhhhhHHHhhc---------------------CCCEEEEEEE
Q 040481 62 GKEVKAQIWD-----------------------TAGQERFRAVTSAYYR---------------------GAVGALIVYD 97 (222)
Q Consensus 62 ~~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~vi~v~d 97 (222)
+..+.+.+|| ++|++.+...+..++. .+|++|+|||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 6678899999 5555555556666666 7999999999
Q ss_pred CCCh--hhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCHHHHHHHH
Q 040481 98 ITRR--TTFDSISRWLDELKTH-SDTTVARMLVGNKCDLESIRNVSTEEGKSLAEA-EGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 98 ~~~~--~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
++++ .+|+.+..|+..+... ...++|+++|+||+|+.+.+.+ +++..++.. .+++++++||++|.|++++|++|
T Consensus 172 ~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 172 VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp CBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 9998 9999999999888765 3356899999999999754443 466777776 48899999999999999999999
Q ss_pred HHHHH
Q 040481 174 IREIY 178 (222)
Q Consensus 174 ~~~~~ 178 (222)
++.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88653
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=3.2e-27 Score=181.10 Aligned_cols=160 Identities=13% Similarity=0.175 Sum_probs=113.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCe-EEEEEEEeCCCcchhhh-hHHHhhcCCCE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGK-EVKAQIWDTAGQERFRA-VTSAYYRGAVG 91 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 91 (222)
...++|+++|++|||||||+++|++..+...+.++ +.++.. +.+++. .+.+.+||+||++.+.. .+..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 45689999999999999999999998876665543 333333 555543 57889999999999987 78889999999
Q ss_pred EEEEEECCChh-hHHHHHH-HHHHHHh--cCCCCCcEEEEEeCCCCCcCCCCCH--HHHHH-------------------
Q 040481 92 ALIVYDITRRT-TFDSISR-WLDELKT--HSDTTVARMLVGNKCDLESIRNVST--EEGKS------------------- 146 (222)
Q Consensus 92 vi~v~d~~~~~-s~~~~~~-~~~~i~~--~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~------------------- 146 (222)
+|+|||+++.. ++..+.. |...+.. ....++|+++|+||+|+........ +.+..
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555544 4444433 2345689999999999975432110 01111
Q ss_pred -------------HHH-Hc--CCeEEEEccCCC------CCHHHHHHHHHHH
Q 040481 147 -------------LAE-AE--GLFFMETSALDS------TNVKSAFEIVIRE 176 (222)
Q Consensus 147 -------------~~~-~~--~~~~~~~sa~~~------~~i~~~~~~i~~~ 176 (222)
|+. .+ ++.|++|||++| .||+++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 11 667999999999 9999999998864
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=1.2e-26 Score=187.42 Aligned_cols=163 Identities=18% Similarity=0.267 Sum_probs=126.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcchh-----hhhHHHhhcC
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF-----RAVTSAYYRG 88 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~ 88 (222)
..+||+++|++|||||||+++|+++..... ..+..+.+.....+.+++ .+.+.+||+||++.+ ...+..+++.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 358999999999999999999988743221 122223344444555544 578999999999888 6788899999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCc--CCC----CCHHHHHHHHHHcC---CeEEE
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHS--DTTVARMLVGNKCDLES--IRN----VSTEEGKSLAEAEG---LFFME 157 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~~~ 157 (222)
+|++|+|||++++.+|+.+..|...+.... ..++|+++|+||+|+.+ .+. +..+++.+++..++ +++++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999999999999999999977765554332 25689999999999975 333 55577788888887 78999
Q ss_pred EccCCCCCHHHHHHHHHHHHHH
Q 040481 158 TSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 158 ~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
+||++ .++.++|..+++.+..
T Consensus 161 tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTTCS
T ss_pred eeecC-ChHHHHHHHHHHHHcC
Confidence 99999 8999999988876543
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.7e-27 Score=191.58 Aligned_cols=159 Identities=18% Similarity=0.332 Sum_probs=118.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+|+|+++||||||+++|.+..+... .++.+. ....+... .+.+.||||||++.+...+..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGF--NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTE--EEEEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccce--EEEEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3457999999999999999999988775433 244443 33334444 467889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+|..+..|+..+.... ..++|++||+||+|+.+.. ..+++..... ..+++++++||++|.||+
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 9999999999999988776665443 3578999999999997533 2222222221 234579999999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYS 179 (222)
Q Consensus 168 ~~~~~i~~~~~~ 179 (222)
++|++|++.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 108
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=1.5e-26 Score=173.63 Aligned_cols=158 Identities=21% Similarity=0.234 Sum_probs=118.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCC-----------cchhhhhHHHh
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG-----------QERFRAVTSAY 85 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 85 (222)
++|+++|++|||||||+++|.+..+...+.++.+.... .+.+. .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998876666665443333 23333 478999999 56677777777
Q ss_pred hcC-CCEEEEEEECCChhhHHHH-HHHHHH---------HHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe
Q 040481 86 YRG-AVGALIVYDITRRTTFDSI-SRWLDE---------LKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF 154 (222)
Q Consensus 86 ~~~-~d~vi~v~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 154 (222)
++. ++++++||++.+..++..+ ..|... +......++|+++|+||+|+.... .+...+++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 777 7777777777777777776 556542 122223568999999999997644 56677888888764
Q ss_pred -------EEEEccCCCCCHHHHHHHHHHHHHHHhhh
Q 040481 155 -------FMETSALDSTNVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 155 -------~~~~sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (222)
++++||++|.|++++|+++++.+.+.+.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999988766544
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=5e-26 Score=170.75 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=123.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh------hhHHHhhc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR------AVTSAYYR 87 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 87 (222)
...++|+++|++|||||||+++|.+........++.+.+.....+.+++ ..+.+||+||...+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3568999999999999999999998765444555656666666666665 567899999987763 34555664
Q ss_pred --CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 88 --GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 88 --~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
.+|++++|+|+++ ++....|+..+.. .+.|+++|+||+|+.....+. .....++...+++++++||+++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 5999999999875 4556677777655 457999999999987544443 346678888899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIYSN 180 (222)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (222)
++++|+++++.+...
T Consensus 156 v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 156 IEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998876543
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2.4e-26 Score=197.19 Aligned_cols=161 Identities=19% Similarity=0.356 Sum_probs=124.4
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
....++|+++|.++||||||+++|++..+. ...+|.+..+ ..+.+. .+.+.+|||||++.+...+..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEESS--SCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeE--EEEEeC--CEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 345689999999999999999999998854 3445555443 334343 46788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNV 166 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i 166 (222)
|+|||++++.+|+.+..|+..+..... .++|++||+||+|+.+. ...++...... ..+++++++||++|.||
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 999999999999999988888765433 57899999999999753 22232222211 12456999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 167 KSAFEIVIREIYSN 180 (222)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (222)
+++|++|.+.+...
T Consensus 472 ~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 472 YEGLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998865443
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=7.5e-26 Score=170.75 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=108.6
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCC----------cchhhhh
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG----------QERFRAV 81 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 81 (222)
+....++|+++|++|||||||+++|.+..+.....++.+.+........+. .+.+||+|| .+.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 345678999999999999999999998875544444444444444444443 478999999 6667777
Q ss_pred HHHhhcCC---CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH--HHHHH-HHHHcCCeE
Q 040481 82 TSAYYRGA---VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVST--EEGKS-LAEAEGLFF 155 (222)
Q Consensus 82 ~~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~ 155 (222)
+..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+...+.. +++.+ +....++++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 77777776 9999999999987766542 2222222 4579999999999976444322 22222 222346789
Q ss_pred EEEccCCCCCHHHHHHHHHHHH
Q 040481 156 METSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 156 ~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
+++||++|.|++++|++|.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=2.4e-25 Score=162.73 Aligned_cols=150 Identities=19% Similarity=0.181 Sum_probs=106.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch-------hhhhHHHhhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER-------FRAVTSAYYRG 88 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 88 (222)
++|+++|++|+|||||+++|.+.... ....++.+.+.....+..++. .+.+||+||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988753 223344444555556666664 577999999876 34556778899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVK 167 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 167 (222)
+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. +++.+++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998754322 112222222 357999999999997542 2333445 5676 79999999999999
Q ss_pred HHHHHHHHHH
Q 040481 168 SAFEIVIREI 177 (222)
Q Consensus 168 ~~~~~i~~~~ 177 (222)
++|+++++.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999988753
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=6.5e-26 Score=168.37 Aligned_cols=152 Identities=23% Similarity=0.223 Sum_probs=114.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh--------hHHHhh
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA--------VTSAYY 86 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 86 (222)
..+|+++|++|||||||+++|.+.... ....++++.++....+.+++. .+.+||+||...+.. ....++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 479999999999999999999987643 223344455666667777764 467999999754311 122468
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 87 RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 87 ~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
+.+|++|+|||++++.+++ ...|+..+......++|+++|+||+|+.+... .++...+++++++||++|.|+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGV 153 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTH
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCH
Confidence 9999999999999988876 35677777766556789999999999854211 112234678999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 167 KSAFEIVIREI 177 (222)
Q Consensus 167 ~~~~~~i~~~~ 177 (222)
+++|++|.+.+
T Consensus 154 ~~l~~~l~~~~ 164 (172)
T 2gj8_A 154 DVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=5.3e-25 Score=173.66 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=119.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh------hHHHhh-
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA------VTSAYY- 86 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~- 86 (222)
...++|+++|++|||||||+++|++..+.....+..+.+.....+...+ ..+.+||+||...+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4568999999999999999999998776544455555555555555544 5688999999876653 334555
Q ss_pred -cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 87 -RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 87 -~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
..+|++|+|+|+++.++.. .|...+.. .++|+++|+||+|+.+.+.+.. ....++..++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999876533 35555544 3689999999999975544443 36778888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIY 178 (222)
Q Consensus 166 i~~~~~~i~~~~~ 178 (222)
++++|+.+.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 115
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=1.6e-26 Score=186.01 Aligned_cols=157 Identities=15% Similarity=0.214 Sum_probs=118.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh---hHHHhhcCCCE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNP---HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA---VTSAYYRGAVG 91 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 91 (222)
||+++|+.|||||||++++.+...+. ...+|.+.++.. + + ..+.+++|||+|+++|.. .+..+|+.+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 245666666543 2 2 347899999999999964 46889999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC-------CCCCHHHHHHHHHH----cCCeEEEE
Q 040481 92 ALIVYDITRR--TTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI-------RNVSTEEGKSLAEA----EGLFFMET 158 (222)
Q Consensus 92 vi~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 158 (222)
+|+|||++++ ..+..+..|+..+.... .++|+++++||+|+... +.+..+++.++++. .++.|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999998 22333333444444433 46899999999999753 34666667777775 67899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHh
Q 040481 159 SALDSTNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 159 sa~~~~~i~~~~~~i~~~~~~~~ 181 (222)
||++ .+|.++|..+++.++.+.
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhH
Confidence 9998 589999999998766543
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=1.1e-24 Score=176.01 Aligned_cols=164 Identities=18% Similarity=0.100 Sum_probs=125.8
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCccceeEEEEEEEECCeEEEEEEEeCCCcchhh----------
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS-KATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR---------- 79 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------- 79 (222)
++..+.-.|+++|.+|||||||+|+|++..+.... .+.++........... ....+.+|||||...+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 45566779999999999999999999998875432 2333333333333333 14668899999985433
Q ss_pred hhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--CeEEE
Q 040481 80 AVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG--LFFME 157 (222)
Q Consensus 80 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (222)
..+..++..+|++++|+|++++.++.....|+..+.. .+.|+++|+||+|+........+....+...++ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 5667788999999999999999888887777877766 457999999999997445555666777777765 78999
Q ss_pred EccCCCCCHHHHHHHHHHHHH
Q 040481 158 TSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 158 ~sa~~~~~i~~~~~~i~~~~~ 178 (222)
+||++|.|++++|+.+.+.+.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSC
T ss_pred EeCCCCCCHHHHHHHHHHhCc
Confidence 999999999999999888664
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=2.6e-25 Score=175.16 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=118.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh----------hHHHhh
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA----------VTSAYY 86 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 86 (222)
.+|+++|++|||||||+++|++........++.+.+.....+.+++. .+.+||+||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998765555666677777777777765 678999999866543 556667
Q ss_pred --cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 040481 87 --RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDST 164 (222)
Q Consensus 87 --~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (222)
..+|++|+|+|+++.+.+..+..++ . ..++|+++|+||+|+.....+.. ....++..++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l---~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQL---F---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHH---T---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHH---H---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 8999999999999976654443332 2 24689999999999865443322 2455778889999999999999
Q ss_pred CHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIRE 176 (222)
Q Consensus 165 ~i~~~~~~i~~~ 176 (222)
|++++|+++.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999988764
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=4.2e-25 Score=175.31 Aligned_cols=153 Identities=20% Similarity=0.156 Sum_probs=115.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh------hhHHHhhc-
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR------AVTSAYYR- 87 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 87 (222)
..++|+++|++|||||||+++|++........+..+.+.. ...+.. ...+.+||+||...+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~--~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK--SGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCE--EEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEE--EEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 3579999999999999999999987654444444443333 333444 5668899999987764 45566665
Q ss_pred -CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 88 -GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 88 -~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
.+|++|+|+|+++.+.+ ..|...+.. .++|+++|+||+|+.....+. .....++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999987553 345555544 468999999999986544444 3456788888999999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 167 KSAFEIVIREI 177 (222)
Q Consensus 167 ~~~~~~i~~~~ 177 (222)
+++|+++.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=2e-24 Score=162.59 Aligned_cols=158 Identities=15% Similarity=0.200 Sum_probs=111.9
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCC----------cchhhh
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG----------QERFRA 80 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 80 (222)
.+....++|+++|++|||||||+++|++.... ...++.+.+........+. .+.+||+|| .+.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 44566789999999999999999999998743 2233333333333333332 367999999 556667
Q ss_pred hHHHhhcCC---CEEEEEEECCChhhH--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC--CCCHHHHHHHHHHc-C
Q 040481 81 VTSAYYRGA---VGALIVYDITRRTTF--DSISRWLDELKTHSDTTVARMLVGNKCDLESIR--NVSTEEGKSLAEAE-G 152 (222)
Q Consensus 81 ~~~~~~~~~---d~vi~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~-~ 152 (222)
.+..+++.+ |++++|+|+.+..+. ..+..|+... +.|+++|+||+|+.+.. ....++...++... +
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 777777665 999999999876443 3333444332 57999999999997432 22334455555553 4
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 153 LFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 153 ~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
++++++||++|.|++++|+++.+.+.
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999988764
No 120
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=1.9e-25 Score=193.20 Aligned_cols=165 Identities=21% Similarity=0.283 Sum_probs=125.0
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEE------EEE--CCeEEEEEEEeCCCcchhhhhHH
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQS------MEI--DGKEVKAQIWDTAGQERFRAVTS 83 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~ 83 (222)
.....+||+++|.+|||||||+++|++..+...+.++.+.++.... +.+ ++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4567799999999999999999999999887777788777666442 111 23457789999999999999999
Q ss_pred HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS 163 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (222)
.+++.+|++|+|||+++. +.+..|+..+..... +.|+++|+||+|+.+...+..++...++...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999765 445678888877653 5799999999999887788888888888889999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREIYSN 180 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~~~ 180 (222)
.|++++|..+.+.+.+.
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999998877654
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=7.5e-24 Score=168.28 Aligned_cols=157 Identities=19% Similarity=0.146 Sum_probs=120.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh------hHHHhh--
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA------VTSAYY-- 86 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 86 (222)
+.++|+++|++|||||||+++|++........++.+.+.....+.+.+.. +.+||+||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 35799999999999999999999987655556666777777777776644 78999999877654 455666
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 87 RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 87 ~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
..+|++|+|+|+++... ...|...+.... ..|+++|+||+|+.+....... ...+...++++++++||++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence 68999999999998642 233333333321 2799999999998654333332 66788888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040481 167 KSAFEIVIREIYS 179 (222)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (222)
+++|+.+.+.+..
T Consensus 154 ~~l~~~i~~~~~~ 166 (271)
T 3k53_A 154 EELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999998886543
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=3.4e-24 Score=165.12 Aligned_cols=163 Identities=18% Similarity=0.168 Sum_probs=108.7
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCc----------chh
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEF--NPHSKATIGVEFQTQSMEID-GKEVKAQIWDTAGQ----------ERF 78 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~ 78 (222)
+....++|+++|++|+|||||+++|++... .....+..+.... ...+. .....+.+|||||. +.+
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 344568999999999999999999999863 2222232233332 33333 33456889999994 334
Q ss_pred hhhHHHhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--HHHH-HHHHHH--
Q 040481 79 RAVTSAYYRG---AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS--TEEG-KSLAEA-- 150 (222)
Q Consensus 79 ~~~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~-~~~~~~-- 150 (222)
...+..++.. +|++|+|+|+.++.+. ....|+..+.. .++|+++|+||+|+....... .+.. ..+...
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 5555566655 7889999999886442 22445555544 457999999999997533321 1112 222222
Q ss_pred ----cCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 151 ----EGLFFMETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 151 ----~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
.+++++++||++|.|++++|++|.+.+...
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 567899999999999999999998876543
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=3.1e-24 Score=170.76 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=116.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh----------hhHHHh
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR----------AVTSAY 85 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~ 85 (222)
.++|+++|++|+|||||+|+|++........++.+.+.....+...+. .+.+||+||...+. .....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 489999999999999999999998765555566666666666666554 46799999977654 223333
Q ss_pred h--cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 040481 86 Y--RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS 163 (222)
Q Consensus 86 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (222)
+ ..+|++|+|+|+++.+.+..+..++..+ ++|+++|+||+|+.+...+.. ....++..++++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCC
Confidence 3 7999999999999876654444444332 579999999999865433322 245677888999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREIY 178 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~ 178 (222)
.|++++|+.+.+.+.
T Consensus 154 ~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 154 RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999998876543
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.4e-24 Score=166.72 Aligned_cols=144 Identities=18% Similarity=0.283 Sum_probs=106.4
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcC-
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNP---HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG- 88 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 88 (222)
....++|+++|++|+|||||+++|.+..+.. .+.++.+.++ ..+.+.+||+||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4456899999999999999999999987644 2333332222 33457899999999998888888877
Q ss_pred ---CCEEEEEEECC-ChhhHHHHHHHHHHHHhc----CCCCCcEEEEEeCCCCCcCCCCC------HHHHHHHHHHcCCe
Q 040481 89 ---AVGALIVYDIT-RRTTFDSISRWLDELKTH----SDTTVARMLVGNKCDLESIRNVS------TEEGKSLAEAEGLF 154 (222)
Q Consensus 89 ---~d~vi~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~ 154 (222)
+|++|+|||++ ++.+|..+..|+..+... ...++|+++|+||+|+.....+. .++...++...++.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888999998888777654 34678999999999998655433 34556677777888
Q ss_pred EEEEccCCCCC
Q 040481 155 FMETSALDSTN 165 (222)
Q Consensus 155 ~~~~sa~~~~~ 165 (222)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998764
No 125
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.4e-22 Score=166.94 Aligned_cols=163 Identities=20% Similarity=0.184 Sum_probs=121.6
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh---------hhHHH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR---------AVTSA 84 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~ 84 (222)
...++|+++|++|||||||+++|.+........+..+.......+...+ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 3457999999999999999999998764322223333444444444443 567899999974321 12234
Q ss_pred hhcCCCEEEEEEECCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 040481 85 YYRGAVGALIVYDITRRT--TFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALD 162 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (222)
+...+|++++|+|+++.. +++....|+..+..... +.|+++|+||+|+.+...+ ++...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 556799999999999877 77888888888876543 6899999999999754332 445566777889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 040481 163 STNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~ 181 (222)
|+|++++++++.+.+....
T Consensus 320 g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999876543
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=9.1e-23 Score=173.20 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=99.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhH--------HHh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVT--------SAY 85 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 85 (222)
..++|+++|++|+|||||+|+|++.... ....++++.+.....+.+++ +.+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3579999999999999999999987542 33345555566666666766 467899999987655332 346
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
+..+|++|+|+|++++.+++.+..+...+.... +.|+++|+||+|+....... ...+......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCC
Confidence 789999999999999988754333333333322 58999999999997644331 2334443347899999999999
Q ss_pred HHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIY 178 (222)
Q Consensus 166 i~~~~~~i~~~~~ 178 (222)
++++|++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988775
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=7e-23 Score=172.93 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=114.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCc----------chhhhhH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ----------ERFRAVT 82 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 82 (222)
+..++|+++|.+|||||||+++|++.... ....++++.+.....+..++.. +.+|||||+ +.+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence 34689999999999999999999987653 2333444555555556666654 779999997 4444443
Q ss_pred H-HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH-HHHH----HcCCeEE
Q 040481 83 S-AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGK-SLAE----AEGLFFM 156 (222)
Q Consensus 83 ~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~ 156 (222)
. .+++.+|++|+|+|++++.+++.. .|+..+.. .+.|+++|+||+|+.+.+....++.. ++.. ..+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 478899999999999999887765 56666654 45899999999999865554433332 2222 2368999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHH
Q 040481 157 ETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 157 ~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
++||++|.|++++|+.+.+.+..
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999988876554
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.5e-22 Score=171.90 Aligned_cols=161 Identities=19% Similarity=0.161 Sum_probs=117.8
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCccceeEEEEEEEECCeEEEEEEEeCCC----------cchhhhhH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEF-NPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG----------QERFRAVT 82 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 82 (222)
...++|+++|.+++|||||+++|++... .....++++.+.....+..++. .+.+||||| .+.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4568999999999999999999997653 2233344444444445555664 577999999 56666554
Q ss_pred H-HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-----CCeEE
Q 040481 83 S-AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAE-----GLFFM 156 (222)
Q Consensus 83 ~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~ 156 (222)
. .+++.+|++|+|+|++++.+ +....|...+.. .+.|+++|+||+|+.+.+....++..+.+... +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 47899999999999998654 222445555544 45899999999999876666666666666654 58999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHH
Q 040481 157 ETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 157 ~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
++||++|.|++++|..+.+.+...
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999999999988865544
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=2e-22 Score=162.15 Aligned_cols=154 Identities=19% Similarity=0.162 Sum_probs=108.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcch--------hhhhHHHh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER--------FRAVTSAY 85 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 85 (222)
+..+|+++|.+|||||||+|+|++..+... ..+.++.......+... ...+.+|||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 456899999999999999999999887532 23333333222222223 46788999999765 44556678
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH--cCCeEEEEccCC
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWL-DELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEA--EGLFFMETSALD 162 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~ 162 (222)
++.+|++++|||++++.+.. ..|+ ..+.... .+.|+++|+||+|+...... ..+.+.. ...+++++||++
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTTC
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCCC
Confidence 89999999999999875533 3444 4454432 36899999999999753220 2222222 235799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIREI 177 (222)
Q Consensus 163 ~~~i~~~~~~i~~~~ 177 (222)
|.|++++|+.+...+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999887654
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.88 E-value=3.1e-23 Score=173.44 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=115.4
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh-------HH
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV-------TS 83 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~ 83 (222)
+....++|+++|+.++|||||+++|++..+. ....+.++.+.....+.+.+.. .+.+|||||+..+... +.
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 4556789999999999999999999988763 2334444556666666665542 6789999998766433 45
Q ss_pred HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS 163 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (222)
.++..+|++|+|+|+... .....|+..+... ++|+++|+||+|+...... +...+++..++++++++||++|
T Consensus 109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 678999999999999333 3335666666654 5799999999999865443 5566677777899999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREIYSN 180 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~~~ 180 (222)
.|++++|+.|.+.+.+.
T Consensus 181 ~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 181 KGFDDIGKTISEILPGD 197 (423)
T ss_dssp TSTTTHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHhhhhh
Confidence 99999999998877443
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=1.2e-22 Score=165.74 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=116.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch----hhhhHHHh---hcCCC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER----FRAVTSAY---YRGAV 90 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 90 (222)
+|+++|.++||||||+++|++........+.++.......+.+++ ...+.+||+||... +..+...+ +..+|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 588999999999999999988654222222223333333444443 23578999999543 22333344 45599
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--CeEEEEccCCC
Q 040481 91 GALIVYDITR---RTTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG--LFFMETSALDS 163 (222)
Q Consensus 91 ~vi~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~ 163 (222)
++|+|||+++ +.+++.+..|+.++..... ..+|+++|+||+|+.... +...++...+. ++++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 7889999999999988753 578999999999986422 34556666665 68999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREIYS 179 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~~ 179 (222)
.|+++++.+|.+.+.+
T Consensus 315 ~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 315 EGLRELLFEVANQLEN 330 (342)
T ss_dssp STTHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887654
No 132
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=8.3e-22 Score=153.63 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=106.1
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCC--ccceeEEEEEEEECCeEEEEEEEeCCCcc-----------
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKA--TIGVEFQTQSMEIDGKEVKAQIWDTAGQE----------- 76 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------- 76 (222)
..+....++|+++|++|||||||+++|++........+ +.+.......+.+++. .+.+|||||..
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~ 100 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSK 100 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHH
Confidence 44556779999999999999999999999887555444 3444555555556654 56799999932
Q ss_pred hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCcCCCCC------HHHHHHHH
Q 040481 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHS--DTTVARMLVGNKCDLESIRNVS------TEEGKSLA 148 (222)
Q Consensus 77 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~------~~~~~~~~ 148 (222)
.+...+...++.+|++|+|+|++..... ...|+..+.... ....|+++|+||+|+.+...+. .+....+.
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLM 178 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHH
Confidence 3444455566788999999999754331 122333332111 1235899999999986543333 24567788
Q ss_pred HHcCCeEEEEccCCC-----CCHHHHHHHHHHHHHH
Q 040481 149 EAEGLFFMETSALDS-----TNVKSAFEIVIREIYS 179 (222)
Q Consensus 149 ~~~~~~~~~~sa~~~-----~~i~~~~~~i~~~~~~ 179 (222)
...+..|+.++...+ .++.++|..+...+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 179 DIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 888888888877644 6788888877665543
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=1.5e-21 Score=165.96 Aligned_cols=153 Identities=24% Similarity=0.251 Sum_probs=115.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcc-hhh--------hhHHHh
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE-RFR--------AVTSAY 85 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~~~ 85 (222)
.++|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||.. .+. .....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999987643 33445556666666677766 457899999987 543 224567
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
+..+|++|+|||++++.+++... ++..+ ...|+++|+||+|+.+. +..+++..++ ..+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 89999999999999988776543 33333 25799999999999753 3444444443 2447899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIYS 179 (222)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (222)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987664
No 134
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.87 E-value=3.2e-21 Score=164.40 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=111.6
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCc-------CCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHH
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNE-------FNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTS 83 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 83 (222)
......++|+++|+.++|||||+++|++.. ...+..+.++.+.....+.+++ ..+.+||+||++.+...+.
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~ 91 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVV 91 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHH
Confidence 344567999999999999999999999876 2233333344444444444554 5688999999999988888
Q ss_pred HhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHHc----CCe
Q 040481 84 AYYRGAVGALIVYDITR---RTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN--VSTEEGKSLAEAE----GLF 154 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~ 154 (222)
..+..+|++|+|+|+++ +++++.+ ..+.. .++|+++++||+|+.+... ...+++.+++... +++
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 164 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS 164 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred HHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence 99999999999999988 4443332 23332 3578899999999975221 1223444555544 578
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHH
Q 040481 155 FMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 155 ~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
++++||++|.|++++++.|.+.+.
T Consensus 165 ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 165 IIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999998888665
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.86 E-value=1.1e-20 Score=158.08 Aligned_cols=162 Identities=17% Similarity=0.096 Sum_probs=113.3
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEE----------------EEEE---CCeEEEEEEEeCC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQ----------------SMEI---DGKEVKAQIWDTA 73 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~---~~~~~~~~i~D~~ 73 (222)
..+.++|+++|++++|||||+++|++.......... ....... .... ......+.+||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 456689999999999999999999875432211000 0000000 0000 1123678999999
Q ss_pred CcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--HHHHHHHHHH-
Q 040481 74 GQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS--TEEGKSLAEA- 150 (222)
Q Consensus 74 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~- 150 (222)
|++.+.......+..+|++|+|+|++++.++....+|+..+..... .|+++|+||+|+.+..... .+++.++...
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998767777777766655432 4889999999997533211 1122222222
Q ss_pred --cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 151 --EGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 151 --~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
.+++++++||++|.|++++++.|.+.+
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 167899999999999999999887754
No 136
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=7.2e-21 Score=159.34 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=103.8
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCc---CCCCCCC--ccceeEEEEEEEE-------------C--C----eEEEEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNE---FNPHSKA--TIGVEFQTQSMEI-------------D--G----KEVKAQ 68 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 68 (222)
....++|+++|+.++|||||+++|++.. +..+..+ |....+....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3456899999999999999999998643 2233334 3333333322211 1 1 136789
Q ss_pred EEeCCCcchhhhhHHHhhcCCCEEEEEEECCCh----hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHH
Q 040481 69 IWDTAGQERFRAVTSAYYRGAVGALIVYDITRR----TTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN--VSTE 142 (222)
Q Consensus 69 i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~ 142 (222)
+||+||++.|.......+..+|++|+|+|++++ ++++.+. .+.... ..|+++++||+|+.+... ...+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEILG--IDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHTT--CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHcC--CCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999988777788889999999999964 4444333 222221 247899999999976443 2334
Q ss_pred HHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 143 EGKSLAEA---EGLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 143 ~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
++.+++.. .+++++++||++|.|++++++.|.+.+.
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 55666554 3678999999999999999998876543
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=3.2e-21 Score=162.91 Aligned_cols=151 Identities=25% Similarity=0.309 Sum_probs=104.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch---------hhhhHHHhh
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER---------FRAVTSAYY 86 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 86 (222)
.+|+++|.++||||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 48999999999999999999987753 2344555666666677777654 67999999653 234567789
Q ss_pred cCCCEEEEEEECCChhhHHH--HHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH-HHHHHHcCC-eEEEEccCC
Q 040481 87 RGAVGALIVYDITRRTTFDS--ISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEG-KSLAEAEGL-FFMETSALD 162 (222)
Q Consensus 87 ~~~d~vi~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~ 162 (222)
+.+|++|+|+|+.++.+... +..|+.. .++|+++|+||+|+... . .... .+++ .++. +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999988765432 2333332 24799999999998532 1 1222 3343 4565 689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIREIYS 179 (222)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (222)
|.|+.++|+.+.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999887764
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=8.1e-21 Score=164.94 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=111.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCc--CCC-----CC------CCccceeEEEEE--EEE---CCeEEEEEEEeCCCcc
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNE--FNP-----HS------KATIGVEFQTQS--MEI---DGKEVKAQIWDTAGQE 76 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~~-----~~------~~~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~ 76 (222)
+..+|+|+|+.++|||||+++|+... +.. .. ....+.++.... +.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35799999999999999999998632 110 00 011223332222 222 4557889999999999
Q ss_pred hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe--
Q 040481 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF-- 154 (222)
Q Consensus 77 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 154 (222)
.|...+...++.+|++|+|+|++++.++.....|+.... .++|+++|+||+|+...+ ..+...++...++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999989999999999999999999887777777766553 357999999999997532 233345566666664
Q ss_pred -EEEEccCCCCCHHHHHHHHHHHHH
Q 040481 155 -FMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 155 -~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
++++||++|.|++++|+.+++.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 899999999999999998887654
No 139
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.85 E-value=5.4e-21 Score=156.59 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=102.4
Q ss_pred EEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHhcCC-CCC
Q 040481 54 QTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITR----------RTTFDSISRWLDELKTHSD-TTV 122 (222)
Q Consensus 54 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~i~~~~~-~~~ 122 (222)
....+.++ .+.+++||++|++.+...|..+++.++++|||||+++ ..+|.....|+..+..... .++
T Consensus 184 ~~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~ 261 (353)
T 1cip_A 184 VETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT 261 (353)
T ss_dssp EEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred EEEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCC
Confidence 33444444 4678899999999999999999999999999999999 4568888888888876532 568
Q ss_pred cEEEEEeCCCCCcCC---------------CCCHHHHHHHHH-----------HcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 123 ARMLVGNKCDLESIR---------------NVSTEEGKSLAE-----------AEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 123 p~iiv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
|++|++||.|+.+.. .+..+++..++. ..++.+++|||+++.||.++|.++.+.
T Consensus 262 piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 262 SIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp EEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 999999999985322 356778888876 356789999999999999999999998
Q ss_pred HHHH
Q 040481 177 IYSN 180 (222)
Q Consensus 177 ~~~~ 180 (222)
++..
T Consensus 342 i~~~ 345 (353)
T 1cip_A 342 IIKN 345 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 140
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=1.4e-20 Score=163.30 Aligned_cols=160 Identities=22% Similarity=0.283 Sum_probs=114.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCc--CCC-----CCC------CccceeEE--EEEEEE---CCeEEEEEEEeCCCc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNE--FNP-----HSK------ATIGVEFQ--TQSMEI---DGKEVKAQIWDTAGQ 75 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~-----~~~------~~~~~~~~--~~~~~~---~~~~~~~~i~D~~G~ 75 (222)
....+|+++|+.++|||||+++|+... +.. ... ...+.++. ...+.+ ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999997632 110 000 00111111 112222 455688999999999
Q ss_pred chhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC--
Q 040481 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-- 153 (222)
Q Consensus 76 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 153 (222)
..|...+...++.+|++|+|+|++++.+......|+.... .++|+++++||+|+...+ ..+...++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9998888889999999999999999988877777766553 457999999999997532 22334556666666
Q ss_pred -eEEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 154 -FFMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 154 -~~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
.++++||++|.|++++|+.+++.+..
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhccc
Confidence 38999999999999999998876643
No 141
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=2.4e-20 Score=153.54 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcc---------hhhhhHHHhhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE---------RFRAVTSAYYRG 88 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~ 88 (222)
.|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+.+|||+|.. .+... ...+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence 499999999999999999998876433344445555666777777 456799999962 22223 335788
Q ss_pred CCEEEEEEECCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC-CHHHHHHHHHHc---CCeEEEEccCC
Q 040481 89 AVGALIVYDITRRT--TFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV-STEEGKSLAEAE---GLFFMETSALD 162 (222)
Q Consensus 89 ~d~vi~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~sa~~ 162 (222)
+|++++|+|++++. ....+..|...+........|+++|+||+|+.+.... ..+.+..++... +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 5566666666666554456899999999998643210 011222333444 34689999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIREIYSN 180 (222)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (222)
+.|++++++.|.+.+...
T Consensus 338 g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccc
Confidence 999999999888866543
No 142
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=9.3e-21 Score=158.79 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=110.4
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcC---CCCCCC--ccceeEEEEEEEE-------------C--C----eEEEE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEF---NPHSKA--TIGVEFQTQSMEI-------------D--G----KEVKA 67 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 67 (222)
.....++|+++|+.++|||||+++|++... ..+..+ |....+....+.. + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 346679999999999999999999986432 233334 2222333222211 0 1 13678
Q ss_pred EEEeCCCcchhhhhHHHhhcCCCEEEEEEECCCh----hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCH
Q 040481 68 QIWDTAGQERFRAVTSAYYRGAVGALIVYDITRR----TTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN--VST 141 (222)
Q Consensus 68 ~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--~~~ 141 (222)
.+||+||++.|.......+..+|++|+|+|++++ ++.+.+.. +.... ..|+++++||+|+.+... ...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence 9999999999888777788889999999999964 44443332 22221 247899999999975332 122
Q ss_pred HHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 142 EEGKSLAEA---EGLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 142 ~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
+++.++... .+++++++||++|.|++++++.|.+.+.
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 334444443 3678999999999999999998876543
No 143
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=7.7e-21 Score=148.93 Aligned_cols=168 Identities=14% Similarity=0.080 Sum_probs=106.1
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc--cceeEEEEEEEECCeEEEEEEEeCCCc--------chhhh
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKAT--IGVEFQTQSMEIDGKEVKAQIWDTAGQ--------ERFRA 80 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~ 80 (222)
......++|+++|.+|||||||+|+|++........++ ++.......+..++ ..+.+|||||. +.+..
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHH
Confidence 34456799999999999999999999998765543333 23333444444554 45779999995 33333
Q ss_pred hHHHhh----cCCCEEEEEEECCChhhH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC------CCHHHHHHHHH
Q 040481 81 VTSAYY----RGAVGALIVYDITRRTTF-DSISRWLDELKTHSDTTVARMLVGNKCDLESIRN------VSTEEGKSLAE 149 (222)
Q Consensus 81 ~~~~~~----~~~d~vi~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~------~~~~~~~~~~~ 149 (222)
.....+ +.+|++|+|+|++..... ..+..|+..+......+.|+++++||.|+.+... ...+....+..
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 94 ERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 333333 899999999999753221 1223344443322223579999999999965211 11134567777
Q ss_pred HcCCeEEEEccCC-----CCCHHHHHHHHHHHHHHH
Q 040481 150 AEGLFFMETSALD-----STNVKSAFEIVIREIYSN 180 (222)
Q Consensus 150 ~~~~~~~~~sa~~-----~~~i~~~~~~i~~~~~~~ 180 (222)
..+..+..+++.. +.|+.+++..+.+.+.+.
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 7888877776554 578999999887766654
No 144
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.85 E-value=9.1e-21 Score=149.50 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=107.2
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCc-cceeEEEEEEEECCeEEEEEEEeCCCcchhh----------
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEF-NPHSKAT-IGVEFQTQSMEIDGKEVKAQIWDTAGQERFR---------- 79 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------- 79 (222)
+....++|+|+|++|||||||+++|++... .....++ ++.+.....+..++ ..+.+|||||...+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 455679999999999999999999998774 3333333 34444545555555 457899999976542
Q ss_pred -hhHHHhhcCCCEEEEEEECCChhhH-HHHHHHHHHHHhcCCCCCcEEEEEe-CCCCCcCCCCCH-------HHHHHHHH
Q 040481 80 -AVTSAYYRGAVGALIVYDITRRTTF-DSISRWLDELKTHSDTTVARMLVGN-KCDLESIRNVST-------EEGKSLAE 149 (222)
Q Consensus 80 -~~~~~~~~~~d~vi~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~n-K~Dl~~~~~~~~-------~~~~~~~~ 149 (222)
......++.+|++|+|+|++..... ..+..|+..+.... ...|+++|+| |+|+... .+.. +.+..++.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence 1223467899999999999862221 22233444332211 1346677766 9999742 2211 22444566
Q ss_pred HcCCe---E--EEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 150 AEGLF---F--METSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 150 ~~~~~---~--~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
..+.. + +++||+++.|++++|.++.+.+...
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 55543 2 7899999999999999999877653
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.85 E-value=1.5e-20 Score=158.67 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=105.5
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCC-------------------------------CCCCCccceeEEEEEEE
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFN-------------------------------PHSKATIGVEFQTQSME 59 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 59 (222)
.+....++|+++|++++|||||+++|+..... .+..+ +++.......
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~--GiTid~~~~~ 89 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK--GKTVEVGRAY 89 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhc--CceEEEeEEE
Confidence 34566799999999999999999999654211 11112 3334444444
Q ss_pred ECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhh---HH---HHHHHHHHHHhcCCCCCc-EEEEEeCCC
Q 040481 60 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTT---FD---SISRWLDELKTHSDTTVA-RMLVGNKCD 132 (222)
Q Consensus 60 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~D 132 (222)
+......+.+|||||++.|.......+..+|++|+|+|++++.. |+ ...+.+..+. ..++| +++++||+|
T Consensus 90 ~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~---~~~v~~iIvviNK~D 166 (439)
T 3j2k_7 90 FETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKHLIVLINKMD 166 (439)
T ss_pred EecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH---HcCCCeEEEEeecCC
Confidence 44445678999999999999988899999999999999998642 11 1122222222 23466 899999999
Q ss_pred CCcCC--C----CCHHHHHHHHHHc------CCeEEEEccCCCCCHHHHHH
Q 040481 133 LESIR--N----VSTEEGKSLAEAE------GLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 133 l~~~~--~----~~~~~~~~~~~~~------~~~~~~~sa~~~~~i~~~~~ 171 (222)
+.... + ...++...++... +++++++||++|.|+.++++
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 85321 1 1122333444444 35799999999999999765
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=2.7e-21 Score=163.66 Aligned_cols=153 Identities=19% Similarity=0.193 Sum_probs=104.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh--------HHHh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV--------TSAY 85 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 85 (222)
..++|+++|++|+|||||+|+|++.... ....++++.+.....+.+++. .+.+|||||...+... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4579999999999999999999987643 333345455555455566664 5679999997655433 2335
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
+..+|++++|+|++++.+... ..|+..+.. .|+++|+||+|+....... ....+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~~-----~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVKH-----RPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHTT-----SCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhccC-----CcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999999876544 455555532 5999999999997544332 111111 356899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIYS 179 (222)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (222)
+++++++|.+.+..
T Consensus 371 i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 371 IDSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.84 E-value=2.8e-21 Score=165.04 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=99.8
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-----------------------------CCCccceeEEEEEEEECCeE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-----------------------------SKATIGVEFQTQSMEIDGKE 64 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 64 (222)
...++|+++|++++|||||+++|++...... .....++++......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3568999999999999999999976511000 00111233333333344455
Q ss_pred EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHH------HHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDS------ISRWLDELKTHSDTTVARMLVGNKCDLESIRN 138 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 138 (222)
+.+.||||||++.|......++..+|++|+|||++++.++.. ..+.+..+... ...|+++|+||+|+.+.++
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 678899999999999999999999999999999999754322 12222222221 1236899999999976433
Q ss_pred CCHHHHH----HHHHHc-----CCeEEEEccCCCCCHHHH
Q 040481 139 VSTEEGK----SLAEAE-----GLFFMETSALDSTNVKSA 169 (222)
Q Consensus 139 ~~~~~~~----~~~~~~-----~~~~~~~sa~~~~~i~~~ 169 (222)
...+++. .+.... +++++++||++|.|+.++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 3333332 233322 467999999999999863
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=6.2e-21 Score=151.67 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=92.1
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-C-------CCccceeEEEEEEEECCeEEEEEEEeCCCcch-------
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-S-------KATIGVEFQTQSMEIDGKEVKAQIWDTAGQER------- 77 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------- 77 (222)
+...++|+++|.+|+|||||+|+|++...... + .++.+.+.....+..++..+.+.+|||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 34579999999999999999999887665333 2 34445455544444455557899999999632
Q ss_pred hhhhH-------HHhhc-------------CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 78 FRAVT-------SAYYR-------------GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 78 ~~~~~-------~~~~~-------------~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
+.... ..++. .+|+++++++.........-..++..+.. .+|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 22222 23333 37899999977653222222344555543 68999999999986432
Q ss_pred CCC--HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 138 NVS--TEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 138 ~~~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
... .+.+.+.....+++++++||.++.|+.+++.+|.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 221 123445556678999999999999999998877653
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=1.9e-21 Score=164.20 Aligned_cols=152 Identities=18% Similarity=0.130 Sum_probs=98.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcc--------hhhhhHHHhhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE--------RFRAVTSAYYRG 88 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 88 (222)
++|+++|.+|||||||+|+|.+...... ..+.+++.......+...+..+.+|||||.. .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999998765422 2222333333333333334568899999975 556677788999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVK 167 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 167 (222)
+|++|+|+|+.++.++.. ..+...+. ..+.|+++|+||+|+...... ..++. .++. .++++||.+|.|+.
T Consensus 83 ad~il~vvD~~~~~~~~d-~~~~~~l~---~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp CSEEEEEEETTTCSCHHH-HHHHHHHT---TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHH---HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChH
Confidence 999999999998876543 22333333 256799999999998643211 11222 3444 68999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 168 SAFEIVIREIY 178 (222)
Q Consensus 168 ~~~~~i~~~~~ 178 (222)
++++++.+.+.
T Consensus 154 ~L~~~i~~~l~ 164 (436)
T 2hjg_A 154 DLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHhcC
Confidence 99999887664
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=3.2e-20 Score=156.81 Aligned_cols=160 Identities=24% Similarity=0.175 Sum_probs=106.8
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh-----------
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV----------- 81 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 81 (222)
...++|+++|++|||||||+++|++.... ....+.++.+.....+.+++.. +.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHH
Confidence 34689999999999999999999987642 2223333444445566677754 679999997432211
Q ss_pred -HHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH-HHHH----HcCCeE
Q 040481 82 -TSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGK-SLAE----AEGLFF 155 (222)
Q Consensus 82 -~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~ 155 (222)
....+..+|++++|+|+.++.+.... .+...+.. .+.|+++|+||+|+.+.+....++.. .+.. ..++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 23467889999999999987665542 23333332 45799999999999765443333332 2222 336789
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHH
Q 040481 156 METSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 156 ~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
+++||++|.|++++|+.+.+.+..
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988875443
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=5e-23 Score=176.41 Aligned_cols=157 Identities=19% Similarity=0.192 Sum_probs=111.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
+.++|+++|++++|||||+++|.+..+.....++++.++....+..+ ....+.||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 45789999999999999999998876654444554444333333332 12357899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHH---HHHc--CCeEEEEccCCCCCHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN--VSTEEGKSL---AEAE--GLFFMETSALDSTNVK 167 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~---~~~~--~~~~~~~sa~~~~~i~ 167 (222)
|||++++........| . .....++|+++++||+|+.+... +..+ ...+ +..+ .++++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~e~l-~---~~~~~~vPiIVViNKiDl~~~~~~~v~~~-l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-Q---HAKDAHVPIVLAINKCDKAEADPEKVKKE-LLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHHHHH-H---HHHTTTCCEEECCBSGGGTTTSCCSSSSH-HHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHHHHH-H---HHHHcCCcEEEEEecccccccchHHHHHH-HHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 9999997654333322 2 22235679999999999974322 2221 1111 1111 3579999999999999
Q ss_pred HHHHHHHHHH
Q 040481 168 SAFEIVIREI 177 (222)
Q Consensus 168 ~~~~~i~~~~ 177 (222)
++|+.+...+
T Consensus 157 eLle~I~~l~ 166 (537)
T 3izy_P 157 ALAEATIALA 166 (537)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHhh
Confidence 9999888754
No 152
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.83 E-value=7e-20 Score=148.05 Aligned_cols=127 Identities=14% Similarity=0.162 Sum_probs=100.7
Q ss_pred EEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHhcCC-CC
Q 040481 53 FQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDIT----------RRTTFDSISRWLDELKTHSD-TT 121 (222)
Q Consensus 53 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~ 121 (222)
+....+.+.+ +.+++||++|++.+...|..+++.++++|||||++ +..+|+....|+..+..... .+
T Consensus 157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~ 234 (327)
T 3ohm_A 157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 234 (327)
T ss_dssp EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence 3444444444 77899999999999999999999999999999665 56678887778877765433 57
Q ss_pred CcEEEEEeCCCCCcCC----------------CCCHHHHHHHHH----------HcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 122 VARMLVGNKCDLESIR----------------NVSTEEGKSLAE----------AEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 122 ~p~iiv~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
+|+++++||+|+.+.+ ....+++.+++. ..++.+++|||+++.||.++|..+.+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 8999999999985432 466777777743 34567899999999999999999999
Q ss_pred HHHHHh
Q 040481 176 EIYSNV 181 (222)
Q Consensus 176 ~~~~~~ 181 (222)
.++...
T Consensus 315 ~Il~~~ 320 (327)
T 3ohm_A 315 TILQLN 320 (327)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 887643
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.9e-21 Score=143.64 Aligned_cols=116 Identities=19% Similarity=0.352 Sum_probs=87.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC---CCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcC-
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPH---SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG- 88 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 88 (222)
....++|+++|++|||||||+++|.+..+... ..++.+.++ ..+.+.+||+||...+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35668999999999999999999998875431 222222111 34567899999998887777777766
Q ss_pred ---CCEEEEEEECC-ChhhHHHHHHHHHHHHhc----CCCCCcEEEEEeCCCCCcCC
Q 040481 89 ---AVGALIVYDIT-RRTTFDSISRWLDELKTH----SDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 89 ---~d~vi~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~Dl~~~~ 137 (222)
+|++|+|||++ +..++..+..|+..+... ...++|+++|+||+|+.+..
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 899999998888777543 33578999999999997543
No 154
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.83 E-value=5.7e-20 Score=147.92 Aligned_cols=156 Identities=21% Similarity=0.124 Sum_probs=105.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcc-h--------hhhhHHH
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE-R--------FRAVTSA 84 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~~~ 84 (222)
+..+|+|+|++|+|||||+++|++...... ..+.++.......+..+ ...+.+|||||.. . +......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 345899999999999999999999875322 22222222222233333 3567899999987 2 2233445
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEEccCCC
Q 040481 85 YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-FFMETSALDS 163 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~ 163 (222)
.++.+|++++|+|+++ . .....|+..... ..+.|+++++||.|+........+...++...++. .++++||+++
T Consensus 85 ~l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-W--TPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCCEEEEEEEEETTC-C--CHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHhcCCEEEEEEeCCC-C--CHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 6788999999999977 2 233334332222 24579999999999875222223344455555565 6999999999
Q ss_pred CCHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREI 177 (222)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (222)
.|++++++.+...+
T Consensus 160 ~~v~~l~~~i~~~l 173 (301)
T 1ega_A 160 LNVDTIAAIVRKHL 173 (301)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999887644
No 155
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=7e-20 Score=149.94 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=93.9
Q ss_pred eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCC
Q 040481 63 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDIT----------RRTTFDSISRWLDELKTHS-DTTVARMLVGNKC 131 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~ 131 (222)
..+.+++||++|++.+...|..+++.++++|+|||++ +..+|+....|+..+.... ...+|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5788999999999999999999999999999999998 7788999999998887653 2568999999999
Q ss_pred CCCcCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEEccCCCCCHHHHHHHHH
Q 040481 132 DLESIRN--V-------------------STEEGKSLAEA----------------EGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 132 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
|+.+.+. + ..+++..++.. ..+.+++|||+++.||+++|..+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853211 1 13556666432 124468999999999999999999
Q ss_pred HHHHHHh
Q 040481 175 REIYSNV 181 (222)
Q Consensus 175 ~~~~~~~ 181 (222)
+.++...
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887543
No 156
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.82 E-value=3.8e-21 Score=158.43 Aligned_cols=164 Identities=16% Similarity=0.273 Sum_probs=91.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCC--------CccceeEEEEEEEECCeEEEEEEEeCCCc-------ch
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSK--------ATIGVEFQTQSMEIDGKEVKAQIWDTAGQ-------ER 77 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 77 (222)
...++|+|+|++|+|||||+++|++.... ..+. ++.+.......+..++..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 44689999999999999999998765432 2221 33333333333334566678999999998 55
Q ss_pred hhhhHH-------HhhcCCC-------------EEEEEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040481 78 FRAVTS-------AYYRGAV-------------GALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI 136 (222)
Q Consensus 78 ~~~~~~-------~~~~~~d-------------~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 136 (222)
+..++. .++..++ +++|+++.. ..++..+. .|+..+ ..++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 555554 5554433 344444431 33444443 444443 256899999999999764
Q ss_pred CCCCH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHHhhh
Q 040481 137 RNVST--EEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 137 ~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (222)
..+.. +.+..++...+++++++||+++.+ ++.|..+.+.+.+..+.
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 44433 456667777789999999999999 88899888888766543
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=3.5e-20 Score=154.62 Aligned_cols=159 Identities=15% Similarity=0.080 Sum_probs=108.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcC-------CCC-------CCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEF-------NPH-------SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA 80 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 80 (222)
..++|+++|++++|||||+++|++... ... .....+.++......+......+.+|||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 458999999999999999999987410 000 001223344444444544456788999999999988
Q ss_pred hHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCC---CCHHHHHHHHHHcC----
Q 040481 81 VTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESIRN---VSTEEGKSLAEAEG---- 152 (222)
Q Consensus 81 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~---- 152 (222)
.....+..+|++|+|+|++++...+....| ..+.. .++| +++++||+|+.+... ...+++++++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888889999999999999986543333333 33433 3567 678999999974211 11234556666655
Q ss_pred -CeEEEEccCCCCC----------HHHHHHHHHHHH
Q 040481 153 -LFFMETSALDSTN----------VKSAFEIVIREI 177 (222)
Q Consensus 153 -~~~~~~sa~~~~~----------i~~~~~~i~~~~ 177 (222)
++++++||++|.| +.++++.+.+.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 6899999999764 677777665543
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=5.7e-20 Score=155.02 Aligned_cols=155 Identities=20% Similarity=0.196 Sum_probs=105.0
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCC--CC----------CCCc-------------------cceeEEEEEEEEC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFN--PH----------SKAT-------------------IGVEFQTQSMEID 61 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~--~~----------~~~~-------------------~~~~~~~~~~~~~ 61 (222)
....++|+++|++++|||||+++|++.... .. ...+ .+.+.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 355689999999999999999999865411 00 0011 0111222222233
Q ss_pred CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCC-cEEEEEeCCCCCcCCC--
Q 040481 62 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTV-ARMLVGNKCDLESIRN-- 138 (222)
Q Consensus 62 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~Dl~~~~~-- 138 (222)
.....+.+|||||++.|...+..++..+|++|+|+|++++.. ....+++..+... +. |+++|+||+|+.+...
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH
Confidence 344668899999999998888888999999999999998753 2234444444332 23 5899999999975221
Q ss_pred C--CHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 040481 139 V--STEEGKSLAEAEG-----LFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 139 ~--~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~~ 171 (222)
+ ..++...++...+ ++++++||++|.|+++++.
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1 1234556666666 6799999999999998543
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.82 E-value=4.5e-21 Score=161.79 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=103.5
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcC--cCCCC-----------------------------CCCccceeEEEEEEEECC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARN--EFNPH-----------------------------SKATIGVEFQTQSMEIDG 62 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 62 (222)
...++|+++|+.++|||||+++|+.. .+... ....++ .......++.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giT--i~~~~~~~~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVT--INLTFMRFET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEEC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCce--eEeeEEEEec
Confidence 35689999999999999999999864 22110 011222 2222233444
Q ss_pred eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhc----CCCCC-cEEEEEeCCCCCcCC
Q 040481 63 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTH----SDTTV-ARMLVGNKCDLESIR 137 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~-p~iiv~nK~Dl~~~~ 137 (222)
..+.+.+|||||++.|...+..++..+|++|+|||+++ .+|+.+..|....... ...++ |+++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 45678899999999999888899999999999999998 6666543332221111 11233 588999999997521
Q ss_pred ------CCCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 040481 138 ------NVSTEEGKSLAEAEG-----LFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 138 ------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~~ 171 (222)
....+++..++...+ ++++++||++|.|+.+++.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112344566666655 7799999999999986653
No 160
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=3.7e-19 Score=147.39 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=99.2
Q ss_pred EEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHhcC-CCCCcE
Q 040481 56 QSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITR----------RTTFDSISRWLDELKTHS-DTTVAR 124 (222)
Q Consensus 56 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~ 124 (222)
..+.+++ +.+++||++|++.+...|..+++.++++|||||+++ ..+|+.+..|+..+.... ...+|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 3444554 778999999999999999999999999999999999 889999999999887753 367899
Q ss_pred EEEEeCCCCCcCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEccC
Q 040481 125 MLVGNKCDLESIRN---V---------------------------STEEGKSLA-----EA--------EGLFFMETSAL 161 (222)
Q Consensus 125 iiv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~ 161 (222)
+||+||.|+.+.+. + ..+++..|+ .. ..+.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999853221 1 134555553 22 24667899999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 040481 162 DSTNVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~ 182 (222)
++.||+++|..+.+.++....
T Consensus 368 d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHH
Confidence 999999999998887765543
No 161
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.82 E-value=1.3e-19 Score=148.76 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=94.2
Q ss_pred EEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHhcC-CCCC
Q 040481 54 QTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITR----------RTTFDSISRWLDELKTHS-DTTV 122 (222)
Q Consensus 54 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~ 122 (222)
....+.++ .+.+++||++|++.+...|..+++.++++|||||+++ ..+|.....|+..+.... ..++
T Consensus 192 ~~~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~ 269 (362)
T 1zcb_A 192 HEYDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 269 (362)
T ss_dssp EEEEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred EEEEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence 33444444 3678899999999999999999999999999999999 678999988888887653 3568
Q ss_pred cEEEEEeCCCCCcCC----------------CCCHHHHHHHHH-----------HcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 123 ARMLVGNKCDLESIR----------------NVSTEEGKSLAE-----------AEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 123 p~iiv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
|+|+++||.|+.+.. .+..+++..++. ..++.+++|||+++.||.++|.++.+
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 999999999985322 256677777652 34577999999999999999999999
Q ss_pred HHHHHh
Q 040481 176 EIYSNV 181 (222)
Q Consensus 176 ~~~~~~ 181 (222)
.++...
T Consensus 350 ~i~~~~ 355 (362)
T 1zcb_A 350 TILHDN 355 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
No 162
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=9.1e-21 Score=160.85 Aligned_cols=155 Identities=16% Similarity=0.086 Sum_probs=99.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCC--------cchhhhhHHHh
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG--------QERFRAVTSAY 85 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~ 85 (222)
...++|+|+|.+|||||||+|+|++...... ..+.+++..............+.+||||| .+.+...+..+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3457999999999999999999998776422 22334444444444554556788999999 66677778889
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
++.+|++|+|+|..++.+ ....|+..+.. ..++|+++|+||+|+.+... ...++.......++++||.+|.|
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~--~~~~pvilV~NK~D~~~~~~----~~~e~~~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFYSLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHT--TCCSCEEEEEECC-------------CCSGGGSSSSEEECCTTTCTT
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHH--HcCCCEEEEEECccchhhhh----hHHHHHHcCCCceEEeecccccc
Confidence 999999999999987643 22333333322 25689999999999864221 11112211122467999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREI 177 (222)
Q Consensus 166 i~~~~~~i~~~~ 177 (222)
+.++++.+.+.+
T Consensus 172 v~~L~~~i~~~l 183 (456)
T 4dcu_A 172 LGDLLDAVAEHF 183 (456)
T ss_dssp HHHHHHHHHTTG
T ss_pred hHHHHHHHHhhc
Confidence 999999887654
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.82 E-value=5.2e-20 Score=151.95 Aligned_cols=147 Identities=9% Similarity=0.020 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
+|+++|++++|||||+++|+ ...++.+.... .+......+.+|||||++.|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~--~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMY--NNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEE--EECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEE--EEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 11122222222 233344568899999999998877888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEe-CCCCCcCCCCCH--HHHHHHHHHc---CCeEEE--EccCC---CCC
Q 040481 98 ITRRTTFDSISRWLDELKTHSDTTVAR-MLVGN-KCDLESIRNVST--EEGKSLAEAE---GLFFME--TSALD---STN 165 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--~sa~~---~~~ 165 (222)
++. .+....+++..+... ++|. ++++| |+|+ +...+.. +++.++.... .+++++ +||++ +.|
T Consensus 93 -~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 543 345556666655543 4677 88899 9999 4322221 3444444433 378999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIYSN 180 (222)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (222)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999888876543
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.81 E-value=1.5e-20 Score=157.27 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=103.5
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcC--------cCCCC-------CCCccceeEEEEEEEECCeEEEEEEEeCCCcc
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARN--------EFNPH-------SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 76 (222)
.....++|+++|++++|||||+++|++. .+... .....+.++......+......+.+|||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456689999999999999999999873 11100 00122333333344444445678899999999
Q ss_pred hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC---CHHHHHHHHHHcC
Q 040481 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESIRNV---STEEGKSLAEAEG 152 (222)
Q Consensus 77 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 152 (222)
.|.......+..+|++|+|+|++++... ...+|+..+.. .++| +++++||+|+.+.... ..+++.+++...+
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9988888899999999999999987543 33555555544 3567 7899999999742111 1224555666554
Q ss_pred -----CeEEEEccCCCCC
Q 040481 153 -----LFFMETSALDSTN 165 (222)
Q Consensus 153 -----~~~~~~sa~~~~~ 165 (222)
++++++||++|.|
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 6899999999987
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.81 E-value=2.3e-19 Score=155.87 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=105.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC----CCccceeEEEEEE------------EECCeEEEEEEEeCCCcchh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHS----KATIGVEFQTQSM------------EIDGKEVKAQIWDTAGQERF 78 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~ 78 (222)
+.++|+++|++++|||||+++|++....... .++.+..+..... ..+.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4579999999999999999999876543221 1222221111000 00001124789999999999
Q ss_pred hhhHHHhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC------------HHH
Q 040481 79 RAVTSAYYRGAVGALIVYDITR---RTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS------------TEE 143 (222)
Q Consensus 79 ~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~------------~~~ 143 (222)
...+...++.+|++|+|||+++ +++++.+.. +.. .++|+++++||+|+....... .+.
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 8888888899999999999999 666554432 222 457999999999996422110 000
Q ss_pred -----------HHHHHHHc---------------CCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 144 -----------GKSLAEAE---------------GLFFMETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 144 -----------~~~~~~~~---------------~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
........ .++++++||++|.|++++++++...+...
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 11111111 23799999999999999999998876543
No 166
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=1.9e-19 Score=146.00 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=94.1
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCC
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDIT----------RRTTFDSISRWLDELKTHSD-TTVARMLVGNKCD 132 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D 132 (222)
.+.+++||++|++.+...|..+++.++++|||||++ +..+|.....|+..+..... .++|+++++||.|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 477899999999999999999999999999999998 67788888888877766543 6789999999999
Q ss_pred CCcCC---------------CCCHHHHHHHHHH-c--------------------------CCeEEEEccCCCCCHHHHH
Q 040481 133 LESIR---------------NVSTEEGKSLAEA-E--------------------------GLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 133 l~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~sa~~~~~i~~~~ 170 (222)
+.+.+ ....+++.+++.. + .+.++++||+++.+|..+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 84311 1235555544432 2 3668999999999999999
Q ss_pred HHHHHHHHH
Q 040481 171 EIVIREIYS 179 (222)
Q Consensus 171 ~~i~~~~~~ 179 (222)
..+.+.++.
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998887
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.80 E-value=1.8e-20 Score=159.34 Aligned_cols=155 Identities=18% Similarity=0.163 Sum_probs=90.7
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCc--CCC-----------------------------CCCCccceeEEEEEEEECC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNE--FNP-----------------------------HSKATIGVEFQTQSMEIDG 62 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 62 (222)
...++|+++|+.++|||||+++|+... +.. +....++.+.....+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 566899999999999999999997521 110 001112222222223333
Q ss_pred eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChh---hHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCC-
Q 040481 63 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRT---TFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESIR- 137 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~- 137 (222)
...+.+|||||++.|.......+..+|++|+|||++++. +|+...+|...+......++| +++++||+|+....
T Consensus 120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 456889999999999888888899999999999999873 332222233222222224567 89999999995421
Q ss_pred -----CCCHHHHHHHHHHc-------CCeEEEEccCCCCCHHHHH
Q 040481 138 -----NVSTEEGKSLAEAE-------GLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 138 -----~~~~~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~ 170 (222)
....+++..++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11122455555554 4679999999999998866
No 168
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.80 E-value=1.1e-19 Score=156.10 Aligned_cols=116 Identities=18% Similarity=0.149 Sum_probs=82.6
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCC------------------C----CCCCccceeEEEEEEEECCeEEEEEEEe
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFN------------------P----HSKATIGVEFQTQSMEIDGKEVKAQIWD 71 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D 71 (222)
....+|+|+|++++|||||+++|+..... . +.....+.......+.+. .+.+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEE
Confidence 45679999999999999999999621100 0 000111222222333333 46688999
Q ss_pred CCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 72 TAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 72 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
|||+..+...+..+++.+|++|+|+|++++.+......|. .+.. .++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 9999999999999999999999999999987766655553 3322 4579999999999863
No 169
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.9e-20 Score=163.51 Aligned_cols=153 Identities=15% Similarity=0.119 Sum_probs=100.7
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCC-----------------------------CccceeEEEEEEEECCeE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSK-----------------------------ATIGVEFQTQSMEIDGKE 64 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 64 (222)
...++|+++|++++|||||+++|++........ ...|+++......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 456899999999999999999998763321110 001222222222333344
Q ss_pred EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhh---H---HHHHHHHHHHHhcCCCCC-cEEEEEeCCCCCcCC
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTT---F---DSISRWLDELKTHSDTTV-ARMLVGNKCDLESIR 137 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~-p~iiv~nK~Dl~~~~ 137 (222)
+.+.||||||++.+...+...+..+|++|+|||++++.. | ......+..+.. .++ |++||+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---TTCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---cCCCeEEEEEecccccchh
Confidence 678899999999999888899999999999999988521 1 111222222222 233 589999999997633
Q ss_pred CCCHH----HHHHHHHHc-----CCeEEEEccCCCCCHHHH
Q 040481 138 NVSTE----EGKSLAEAE-----GLFFMETSALDSTNVKSA 169 (222)
Q Consensus 138 ~~~~~----~~~~~~~~~-----~~~~~~~sa~~~~~i~~~ 169 (222)
....+ ++..+.... +++++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 22222 233333333 468999999999999876
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=1.7e-21 Score=165.63 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=104.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
+.++|+++|+.++|||||+++|.+..+.....+.++.+.....+..++ ..+.||||||++.|..++...+..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999999999987654433333222222222222233 357899999999999888888999999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC--CCCCHHH--HHHHHHHc--CCeEEEEccCCCCC
Q 040481 95 VYDITRR---TTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI--RNVSTEE--GKSLAEAE--GLFFMETSALDSTN 165 (222)
Q Consensus 95 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~--~~~~~~~~--~~~~~~~sa~~~~~ 165 (222)
|||++++ ++++. +..+.. .++|+++++||+|+.+. ..+..+. ...++..+ .++++++||++|.|
T Consensus 81 VVda~~g~~~qT~e~----l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 81 VVAADDGVMPQTIEA----IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEETTTBSCTTTHHH----HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EeecccCccHHHHHH----HHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 9999884 44332 222222 45799999999999642 1111110 00111222 37899999999999
Q ss_pred HHHHHHHHHH
Q 040481 166 VKSAFEIVIR 175 (222)
Q Consensus 166 i~~~~~~i~~ 175 (222)
++++|+++..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999998764
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.79 E-value=9.6e-20 Score=146.25 Aligned_cols=162 Identities=15% Similarity=0.209 Sum_probs=103.4
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC------CCcc-----------------c---eeEE-----------
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS------KATI-----------------G---VEFQ----------- 54 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~------~~~~-----------------~---~~~~----------- 54 (222)
+....++|+|+|.++||||||+++|++..+.+.. .|+. + ++..
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3455689999999999999999999998764211 1210 0 0000
Q ss_pred ------------EEEEEE-CCeEEEEEEEeCCCcc-------------hhhhhHHHhhcCCCEEE-EEEECCChhhHHHH
Q 040481 55 ------------TQSMEI-DGKEVKAQIWDTAGQE-------------RFRAVTSAYYRGAVGAL-IVYDITRRTTFDSI 107 (222)
Q Consensus 55 ------------~~~~~~-~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~vi-~v~d~~~~~s~~~~ 107 (222)
...+.+ ......+.+|||||.. .+...+..+++.++.+| +|+|+++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 000000 0012468899999953 34566777888888776 79999876554333
Q ss_pred HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH--cC-CeEEEEccCCCCCHHHHHHHHHHH
Q 040481 108 SRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEA--EG-LFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 108 ~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
..++..+. ..+.|+++|+||+|+.+......+........ .+ .+++++||++|.|++++++.+.+.
T Consensus 182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 182 LKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 34444443 35689999999999975443222222210001 12 357899999999999999988773
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.78 E-value=3.6e-20 Score=157.09 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=101.5
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCc--CCC-----------------------------CCCCccceeEEEEEEEECC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNE--FNP-----------------------------HSKATIGVEFQTQSMEIDG 62 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 62 (222)
...++|+++|++++|||||+++|++.. +.. +....++.+.... .+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~--~~~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW--KFET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--EEEC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--EEec
Confidence 356899999999999999999998641 110 0001122222222 3334
Q ss_pred eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChh---hHH---HHHHHHHHHHhcCCCCCc-EEEEEeCCCCCc
Q 040481 63 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRT---TFD---SISRWLDELKTHSDTTVA-RMLVGNKCDLES 135 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~ 135 (222)
....+.+|||||++.|.......+..+|++|+|+|++++. +|+ ...+++..+.. .++| +++++||+|+.+
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 4467889999999999988889999999999999999873 221 22222222322 3455 889999999973
Q ss_pred CCC----CCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHH
Q 040481 136 IRN----VSTEEGKSLAEAEG-----LFFMETSALDSTNVKSA 169 (222)
Q Consensus 136 ~~~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 169 (222)
... ...+++..++...+ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 211 11234455555554 68999999999999765
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.78 E-value=1.4e-18 Score=132.27 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=97.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch----------hhhhHH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER----------FRAVTS 83 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 83 (222)
....+|+++|++|||||||+++|.+..+.....++.+.......+.+++ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3457999999999999999999998764333344444443333333333 367999999742 222333
Q ss_pred Hhh---cCCCEEEEEEECCChhhHHH--HHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHHcC--Ce
Q 040481 84 AYY---RGAVGALIVYDITRRTTFDS--ISRWLDELKTHSDTTVARMLVGNKCDLESIRN--VSTEEGKSLAEAEG--LF 154 (222)
Q Consensus 84 ~~~---~~~d~vi~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~ 154 (222)
.++ ..++++++++|+.++.++.. +..|+. ..++|+++|+||.|+....+ ...+.+..++...+ +.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 344 57899999999988765432 223332 14578899999999864211 11234445554443 56
Q ss_pred EEEEccCCCCCHHHHHHHHHHHH
Q 040481 155 FMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 155 ~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
++++||+++.|++++++.|.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEeecCCCCHHHHHHHHHHHH
Confidence 88999999999999999887654
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.77 E-value=7.5e-19 Score=159.83 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=106.3
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCc-------CCC-------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNE-------FNP-------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
.....++|+++|++++|||||+++|++.. +.. ....+.++++....+.++.....+.+|||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34556899999999999999999998741 000 0112233333333344444556788999999999
Q ss_pred hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC---CHHHHHHHHHHcC-
Q 040481 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESIRNV---STEEGKSLAEAEG- 152 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 152 (222)
|.......+..+|++|+|||++++...+ ..+++..+.. .++| +|+++||+|+.+.... ..+++..++...+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 9888888999999999999999874322 2344444443 3467 7889999999752211 1234555666654
Q ss_pred ----CeEEEEccCCC--------CCHHHHHHHHHH
Q 040481 153 ----LFFMETSALDS--------TNVKSAFEIVIR 175 (222)
Q Consensus 153 ----~~~~~~sa~~~--------~~i~~~~~~i~~ 175 (222)
++++++||++| .|+.++++.|..
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 68999999999 346666665544
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.76 E-value=1.4e-17 Score=131.49 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=84.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhc------
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYR------ 87 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------ 87 (222)
..++|+++|++|+|||||+++|++...... ..+..+.......+..++ ..+.+|||||+..+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 568999999999999999999999875322 223333344444455555 46789999998776544333332
Q ss_pred ---CCCEEEEEEECCChhhHHHH-HHHHHHHHhcCCCC--CcEEEEEeCCCCCcCCCCCH
Q 040481 88 ---GAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTT--VARMLVGNKCDLESIRNVST 141 (222)
Q Consensus 88 ---~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~~ 141 (222)
.+|++|+|++++... +... ..|+..+....... .|+++|+||+|+.+.+....
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 171 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence 789999999997654 3333 46676666544332 48999999999965444433
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.75 E-value=1.2e-17 Score=147.92 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=109.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEE-------EE---------------------------
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQ-------SM--------------------------- 58 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~-------~~--------------------------- 58 (222)
...++|+|+|.+++|||||+|+|++....+. ..|++....... .+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3568999999999999999999998875443 223321000000 11
Q ss_pred -------------------EECCeE--EEEEEEeCCCcch---hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHH
Q 040481 59 -------------------EIDGKE--VKAQIWDTAGQER---FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDEL 114 (222)
Q Consensus 59 -------------------~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i 114 (222)
.++... ..+.+|||||... ....+..+++.+|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 111100 2478999999655 3345667889999999999999988877766665544
Q ss_pred HhcCCCCCcEEEEEeCCCCCcCCCCCHH----------HHHH-----HHHH--------cCCeEEEEccC----------
Q 040481 115 KTHSDTTVARMLVGNKCDLESIRNVSTE----------EGKS-----LAEA--------EGLFFMETSAL---------- 161 (222)
Q Consensus 115 ~~~~~~~~p~iiv~nK~Dl~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~sa~---------- 161 (222)
.. .+.|+++|+||+|+.....+..+ .... +... ...+++++||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 32 35689999999998654322111 1111 1111 12468999999
Q ss_pred ----CCCCHHHHHHHHHHHHHHHh
Q 040481 162 ----DSTNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 162 ----~~~~i~~~~~~i~~~~~~~~ 181 (222)
++.|+++++..+.+.+...+
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999888765543
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.75 E-value=5.5e-18 Score=149.53 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=81.7
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCC----------------ccceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKA----------------TIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
....+|+|+|+.|+|||||+++|++......... ..++.+......+....+.+++|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 4457999999999999999999985332110000 012222222223333346788999999999
Q ss_pred hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
+...+..+++.+|++++|+|+.++..... ..++..+.. .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 98888899999999999999987755333 344444443 357999999999986
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=8.8e-18 Score=140.13 Aligned_cols=160 Identities=17% Similarity=0.133 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch----hhhh---HHHhhcCCC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER----FRAV---TSAYYRGAV 90 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~d 90 (222)
.|+|+|++|||||||+++|++........+.++.......+..++ ...+.+||+||... +..+ ....+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999988643211122222233334444443 24577999999632 1111 222356799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
.+++++|++ ...+..+..|...+..... ...|.++|+||.|+... ...+.........++.++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 5567777777766655432 34689999999998753 222334445555678999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 040481 169 AFEIVIREIYSNV 181 (222)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (222)
++++|.+.+.+..
T Consensus 315 L~~~i~~~l~~~~ 327 (416)
T 1udx_A 315 LKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999886543
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.74 E-value=4.6e-20 Score=160.64 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=81.2
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCC-------------------------------CCCCCccceeEEEEEEEEC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFN-------------------------------PHSKATIGVEFQTQSMEID 61 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 61 (222)
....++|+++|++++|||||+++|+..... .+..+ ++++......+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~--GiTid~~~~~~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERAR--GVTMDVASTTFE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcC--CeeEEeeEEEEE
Confidence 456689999999999999999999642110 01112 333333333344
Q ss_pred CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChh---hH---HHHHHHHHHHHhcCCCCCc-EEEEEeCCCCC
Q 040481 62 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRT---TF---DSISRWLDELKTHSDTTVA-RMLVGNKCDLE 134 (222)
Q Consensus 62 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~ 134 (222)
.....+.||||||+..|.......+..+|++|+|+|++++. .+ ......+..+.. .++| +|+|+||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence 44577889999999999888888889999999999998642 01 011222222222 3355 88899999997
Q ss_pred cCCCCCH----HHHHHHH-HHcC-----CeEEEEccCCCCCHH
Q 040481 135 SIRNVST----EEGKSLA-EAEG-----LFFMETSALDSTNVK 167 (222)
Q Consensus 135 ~~~~~~~----~~~~~~~-~~~~-----~~~~~~sa~~~~~i~ 167 (222)
+...... .++..+. ...+ ++++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 5222111 2233333 3334 379999999999998
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=2.4e-18 Score=141.77 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=104.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccc---eeEEEE-----------------------------------
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIG---VEFQTQ----------------------------------- 56 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~~----------------------------------- 56 (222)
..++|+|+|++|||||||+++|.+..+.+......+ +.....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 345999999999999999999999776333221111 000000
Q ss_pred --------------EEEE-CCeEEEEEEEeCCCcchh-------------hhhHHHhhcCCCEEEEEEECCChhhHHHHH
Q 040481 57 --------------SMEI-DGKEVKAQIWDTAGQERF-------------RAVTSAYYRGAVGALIVYDITRRTTFDSIS 108 (222)
Q Consensus 57 --------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~ 108 (222)
.+.+ ......+.+||+||...+ ......++..+|++|+|++..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000 011234789999997665 566778899999999999875433211 3
Q ss_pred HHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 109 RWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 109 ~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
.|+..+......+.|+++|+||+|+.+......+....+...++.+|+++++..+.++++.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 4566666666677899999999999765554444444445556788999999988877766544
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.73 E-value=2.8e-17 Score=141.35 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=78.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC--------------------CCCccceeEEEEEEEECCeEEEEEEEeCC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPH--------------------SKATIGVEFQTQSMEIDGKEVKAQIWDTA 73 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 73 (222)
....+|+++|++++|||||+++|+....... .....+.++......+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4568999999999999999999986321100 00111111111112222234678899999
Q ss_pred CcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 74 GQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 74 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
|+..|...+..++..+|++|+|+|++++.... ...++..+ ...++|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 99999888888999999999999998875322 12222322 235689999999999864
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=2.9e-17 Score=145.41 Aligned_cols=118 Identities=20% Similarity=0.218 Sum_probs=84.0
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCC--------C----------CCCCccceeEEEEEEEECCeEEEEEEEeCC
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFN--------P----------HSKATIGVEFQTQSMEIDGKEVKAQIWDTA 73 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 73 (222)
+.....+|+|+|++++|||||+++|+..... . +....++.......+.+. .+.+.+||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTP 85 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTP 85 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECc
Confidence 4566789999999999999999999842110 0 001111122222233333 4678899999
Q ss_pred CcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 74 GQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 74 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
|+..+...+..+++.+|++|+|+|++++.++.....|... .. .++|+++|+||+|+..
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH---TTCCEEEEEECTTSTT
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HH---cCCCEEEEEECCCccc
Confidence 9999988889999999999999999998887766666543 22 3579999999999864
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=3.8e-17 Score=132.08 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=68.4
Q ss_pred EEEEEEeCCCcch-------------hhhhHHHhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040481 65 VKAQIWDTAGQER-------------FRAVTSAYYRGAVGALIVYDITRRT-TFDSISRWLDELKTHSDTTVARMLVGNK 130 (222)
Q Consensus 65 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK 130 (222)
..+.+|||||... +...+..++..+|++|+|+|..+.. .......+...+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4588999999643 4556777889999999999974332 111111223333 2356899999999
Q ss_pred CCCCcCCCCCHHHHHHHHHHcCCeEEEEccCC------CCCHHHHHHHHHHHHH
Q 040481 131 CDLESIRNVSTEEGKSLAEAEGLFFMETSALD------STNVKSAFEIVIREIY 178 (222)
Q Consensus 131 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~------~~~i~~~~~~i~~~~~ 178 (222)
+|+.+......+.+.......+..++++++.. +.|+.+++..+...+.
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 99975443222222211111225666666554 6888998887766554
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=2e-18 Score=138.83 Aligned_cols=164 Identities=15% Similarity=0.279 Sum_probs=86.5
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcC-cCCCCCCC------ccceeEEEEEEEE--CCeEEEEEEEeCCCc-------c
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARN-EFNPHSKA------TIGVEFQTQSMEI--DGKEVKAQIWDTAGQ-------E 76 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~-~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~i~D~~G~-------~ 76 (222)
....++|+|+|++|+|||||+++|.+. .++....+ +.+.......+.+ .+....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345589999999999999999999875 33322211 1111111112222 334567899999997 4
Q ss_pred hhhhhHH-------HhhcC-------------CCEEEEEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 77 RFRAVTS-------AYYRG-------------AVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 77 ~~~~~~~-------~~~~~-------------~d~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
.+..... .++.. +++++|+.+.+.. +|+.+. .++..+ . ...|+++|+||.|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l---~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI---H-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH---T-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH---H-hcCCEEEEEEeCCCCC
Confidence 4444333 33322 3445565554321 233332 233322 2 3578999999999975
Q ss_pred CCCC--CHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHHhh
Q 040481 136 IRNV--STEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 136 ~~~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 182 (222)
..++ ..+++.+++...+++++++||+++ +++++|..+.+.+.+..+
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 4332 235677888889999999999999 999999999988765443
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.72 E-value=3e-17 Score=130.06 Aligned_cols=123 Identities=12% Similarity=0.091 Sum_probs=80.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhH-------HHh-
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVT-------SAY- 85 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~- 85 (222)
..++|+++|.+|+|||||+++|++..+... ..+..+.......+... .+.+.+|||||...+.... ..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 468999999999999999999998775322 22222222222233333 4568899999986653221 111
Q ss_pred -hcCCCEEEEEEECCChhhHHHH-HHHHHHHHhcCCCC--CcEEEEEeCCCCCcCCCCC
Q 040481 86 -YRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTT--VARMLVGNKCDLESIRNVS 140 (222)
Q Consensus 86 -~~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~ 140 (222)
...+|++|+|+|++.. ++... ..|+..+....... .|+++|+||+|+...+...
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~ 173 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP 173 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence 2468999999999653 23333 46777765543322 6999999999997544333
No 186
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=5.6e-18 Score=136.30 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=108.5
Q ss_pred HHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChh-hHHHHH
Q 040481 31 NLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRT-TFDSIS 108 (222)
Q Consensus 31 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~ 108 (222)
+|+.++..+.+. ..+.||++..+. ..+..++ .+.+||+ ++.+..+++.+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888887 778899885444 3322222 5789999 8889999999999999999999999998 788899
Q ss_pred HHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHHHHHH
Q 040481 109 RWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG--LFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 109 ~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
.|+..+.. .++|+++|+||+|+.+.+.+ ++..+++..++ ++++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99988765 46899999999999754332 44666777777 89999999999999999987654
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.69 E-value=8.7e-16 Score=136.21 Aligned_cols=120 Identities=19% Similarity=0.119 Sum_probs=83.7
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCc--CCCC-----------C-----CCccceeEEEEEEEEC-----CeEEEEE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNE--FNPH-----------S-----KATIGVEFQTQSMEID-----GKEVKAQ 68 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~ 68 (222)
+.....+|+|+|+.++|||||+++|+... +... + ...++.......+.+. +..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34566899999999999999999997531 1100 0 0111222222223222 2347899
Q ss_pred EEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 69 IWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 69 i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
||||||+..|...+...++.+|++|+|+|++++........|.. +. ..++|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccc
Confidence 99999999998888899999999999999998866555444433 22 24589999999999853
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=1.3e-17 Score=138.68 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=47.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEE--E-------------------EECC-eEEEEEEEeCCC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQS--M-------------------EIDG-KEVKAQIWDTAG 74 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~G 74 (222)
++|+++|.++||||||+|+|++........|.++.+..... + .+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 48999999999999999999987732222232222211111 1 1122 257799999999
Q ss_pred cch----hhhhHH---HhhcCCCEEEEEEECCCh
Q 040481 75 QER----FRAVTS---AYYRGAVGALIVYDITRR 101 (222)
Q Consensus 75 ~~~----~~~~~~---~~~~~~d~vi~v~d~~~~ 101 (222)
... ...+.. ..++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 346899999999999875
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=137.18 Aligned_cols=158 Identities=15% Similarity=0.199 Sum_probs=82.2
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-C-------CCccceeEEEEEEEE--CCeEEEEEEEeCCCcchhh--
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-S-------KATIGVEFQTQSMEI--DGKEVKAQIWDTAGQERFR-- 79 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~-- 79 (222)
-....++|+|+|++|+|||||+++|.+...... + .++.. .....+.+ .+....+.+||++|.....
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~--~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~ 104 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ--VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN 104 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE--EEEEECC------CEEEEEEECC--------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee--eeeEEEEEecCCcccceeeeechhhhhhccc
Confidence 344557899999999999999999998765321 1 11111 11112112 2333578899999975431
Q ss_pred -----hh------------------HHHhhcCCCEEEEEEECCCh-hhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 80 -----AV------------------TSAYYRGAVGALIVYDITRR-TTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 80 -----~~------------------~~~~~~~~d~vi~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
.+ ...++..+++.+++|..... .+++.+. .|+..+. .++|+|+|+||+|+.
T Consensus 105 ~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll 180 (418)
T 2qag_C 105 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTL 180 (418)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCc
Confidence 11 12234444444444444332 2344443 5666664 258999999999987
Q ss_pred cCCCCCH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 135 SIRNVST--EEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 135 ~~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
....+.. +.+.+++...+++++++|++++.++.++|..+..
T Consensus 181 ~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 181 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 5444443 5667778888999999999999999987766654
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.69 E-value=2.5e-16 Score=139.47 Aligned_cols=118 Identities=20% Similarity=0.195 Sum_probs=83.5
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcC--cCCC-----------CC-----CCccceeEEEEEEEECCeEEEEEEEeCC
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARN--EFNP-----------HS-----KATIGVEFQTQSMEIDGKEVKAQIWDTA 73 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~--~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 73 (222)
+.....+|+|+|++++|||||+++|+.. .+.. .+ .+.++.......+.+. .+.+.+||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECc
Confidence 3456789999999999999999999852 2110 00 0111111222233333 3668899999
Q ss_pred CcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 74 GQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 74 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
|+..+...+..+++.+|++|+|+|++++.+......|.. +.. .++|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999998888899999999999999999877766655543 333 3579999999999864
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=5.2e-15 Score=121.01 Aligned_cols=145 Identities=20% Similarity=0.136 Sum_probs=90.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCe---------------EEEEEEEeCCCcchhh--
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGK---------------EVKAQIWDTAGQERFR-- 79 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-- 79 (222)
++|+++|.+|||||||+++|++........|.++.+.....+.+++. ...+.+||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987643332332222222223334432 1468899999976542
Q ss_pred -----hhHHHhhcCCCEEEEEEECCCh----------hhHHHHHHHHHH-------------------------------
Q 040481 80 -----AVTSAYYRGAVGALIVYDITRR----------TTFDSISRWLDE------------------------------- 113 (222)
Q Consensus 80 -----~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~------------------------------- 113 (222)
......++.+|++++|+|+.+. .++..+..+..+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 1233457999999999999762 223332221111
Q ss_pred ---------HHh-------------------c-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccC
Q 040481 114 ---------LKT-------------------H-SDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSAL 161 (222)
Q Consensus 114 ---------i~~-------------------~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (222)
+.. . .....|+++++|+.|.......-.+.+++++...+++++++||+
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 111 0 11248999999999864211223456677888889999999965
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.63 E-value=3e-16 Score=120.42 Aligned_cols=155 Identities=13% Similarity=0.115 Sum_probs=94.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC------CCccce--------eEEEEEEEE----------------CCeE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHS------KATIGV--------EFQTQSMEI----------------DGKE 64 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~------~~~~~~--------~~~~~~~~~----------------~~~~ 64 (222)
...+|+++|.+|||||||+++|......... .+..+. ......+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4578999999999999999999875321111 110000 001111110 0112
Q ss_pred EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEG 144 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 144 (222)
+.+.+|||+|...... .+....+.+|+|+|+.+... ....+... .+.|+++|+||+|+.+......+..
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 4577999998511100 11135688999999977643 11111111 1368899999999865333455566
Q ss_pred HHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 145 KSLAEAE--GLFFMETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 145 ~~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
..++... +++++++||++|.|++++|+++.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 6566554 47899999999999999999998876543
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.62 E-value=8.1e-17 Score=132.32 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=94.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC------CCccc--------------------ee---------------
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS------KATIG--------------------VE--------------- 52 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~------~~~~~--------------------~~--------------- 52 (222)
...++|+|+|.++||||||+++|++..+.+.. .|+.. ++
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999998763221 12100 00
Q ss_pred --------EEEEEEEEC-CeEEEEEEEeCCCcc-------------hhhhhHHHhhcCCC-EEEEEEECCChhhHHHHHH
Q 040481 53 --------FQTQSMEID-GKEVKAQIWDTAGQE-------------RFRAVTSAYYRGAV-GALIVYDITRRTTFDSISR 109 (222)
Q Consensus 53 --------~~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~vi~v~d~~~~~s~~~~~~ 109 (222)
.....+.+. .....+.+|||||.. .+..+...++...+ ++++|++++....-. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---H
Confidence 000001111 113468899999953 34456666776665 455566765532211 1
Q ss_pred HHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHH--HHHHcC-CeEEEEccCCCCCHHHHHHHHHH
Q 040481 110 WLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKS--LAEAEG-LFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 110 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
|...+......+.|+++|+||.|+.+......+.... +....+ .+++++||+++.|++++++.+..
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2233333444678999999999997543322221110 000112 34788999999999999988766
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.60 E-value=1.5e-17 Score=128.15 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=90.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEE------------EEEEEEC-Ce------------------
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQ------------TQSMEID-GK------------------ 63 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 63 (222)
..++|+++|++|||||||+++|....+...+.++.+.++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3589999999999999999999887654433333332221 1111111 10
Q ss_pred -EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH
Q 040481 64 -EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTE 142 (222)
Q Consensus 64 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 142 (222)
...+.++|++|.-... ..+-...+.++.++++....... ...... ...|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI--EKHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT--TTCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH--hhhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 0134456665521110 01111234455666643221100 000111 12577999999999754445566
Q ss_pred HHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 143 EGKSLAEAE--GLFFMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 143 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
+...++... +++++++||++|.|++++|+++.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 666666654 6789999999999999999999887653
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.60 E-value=5.2e-16 Score=127.60 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=69.5
Q ss_pred EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEG 144 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 144 (222)
+.+.||||||.... ....+..+|++|+|+|......+..+.. .-...|+++|+||+|+....... ...
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LAA 239 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HHH
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HHH
Confidence 56789999995432 2334588999999999877654322111 11235889999999986422211 111
Q ss_pred HHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 145 KSLAEA----------EGLFFMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 145 ~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
.++... ++.+++++||++|.|+++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222221 25789999999999999999999887654
No 196
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.57 E-value=1e-14 Score=125.93 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=79.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcC----------------------CCCCCCccceeEEEEEEEECCeEEEEEEEeC
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEF----------------------NPHSKATIGVEFQTQSMEIDGKEVKAQIWDT 72 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 72 (222)
+.-+|+|+|+.++|||||..+|+.... ..+....+++.-....+.+. ++.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--DRVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--TEEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--CEEEEEEeC
Confidence 446899999999999999999963111 01111112222223333344 467889999
Q ss_pred CCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 73 AGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 73 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
||+..|..-....++-+|++|+|+|+.++-.-.....|.. +.. .++|+++++||+|..
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDRE 165 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccch
Confidence 9999999988899999999999999998865444344433 333 457999999999974
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.55 E-value=4.1e-14 Score=116.30 Aligned_cols=154 Identities=16% Similarity=0.096 Sum_probs=92.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECC-------------------eEEEEEEEeCCCcch
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDG-------------------KEVKAQIWDTAGQER 77 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 77 (222)
++|+++|.+|+|||||+++|++........+..+.+.......+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999988653222222212211111222221 234688999999755
Q ss_pred hh-------hhHHHhhcCCCEEEEEEECCCh----------hhHHHHHHHHH----------------------------
Q 040481 78 FR-------AVTSAYYRGAVGALIVYDITRR----------TTFDSISRWLD---------------------------- 112 (222)
Q Consensus 78 ~~-------~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~---------------------------- 112 (222)
.. ......++.+|++++|+|+.+. ..+..+..+..
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 32 2234468999999999999752 11221111100
Q ss_pred -----------HHHhcC--------------------CCCCcEEEEEeCCCCC--cC-CCCCHHHHHHHHHHcCCeEEEE
Q 040481 113 -----------ELKTHS--------------------DTTVARMLVGNKCDLE--SI-RNVSTEEGKSLAEAEGLFFMET 158 (222)
Q Consensus 113 -----------~i~~~~--------------------~~~~p~iiv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~ 158 (222)
.+.... -...|+++++||.|.. +. .....+.+++++...+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 010100 1237999999999842 21 1233456777888889999999
Q ss_pred ccCCCCCHHHHH
Q 040481 159 SALDSTNVKSAF 170 (222)
Q Consensus 159 sa~~~~~i~~~~ 170 (222)
||+...++.++.
T Consensus 242 SAk~E~el~eL~ 253 (368)
T 2dby_A 242 SARLEAELAELS 253 (368)
T ss_dssp CHHHHHHHHTSC
T ss_pred echhHHHHHHhc
Confidence 998765555543
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.55 E-value=1.8e-14 Score=130.15 Aligned_cols=118 Identities=21% Similarity=0.212 Sum_probs=85.8
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC----------------CCCC--ccceeEEEEEEE------------ECC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNP----------------HSKA--TIGVEFQTQSME------------IDG 62 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~ 62 (222)
.....+|+|+|+.++|||||+++|+...... +... ++........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3456899999999999999999998642100 0111 111111111121 234
Q ss_pred eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 63 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
..+.+++|||||+..|...+..+++.+|++|+|||++++.++.....|..... .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 47889999999999999999999999999999999999988777666654432 357999999999986
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.54 E-value=8.1e-15 Score=126.65 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=82.1
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCccceeEEEEE----------------------EE-------
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFN---PHSKATIGVEFQTQS----------------------ME------- 59 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~~------- 59 (222)
.....++|+|+|.+|+|||||+|+|++..+. ....+++.....+.. +.
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 3456689999999999999999999998763 222233211110000 00
Q ss_pred -------ECCe-EEEEEEEeCCCcch-----------hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCC
Q 040481 60 -------IDGK-EVKAQIWDTAGQER-----------FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT 120 (222)
Q Consensus 60 -------~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~ 120 (222)
+.+. ...+.||||||... +...+..++..+|++|+|+|+++....+....|+..+.. .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence 0000 02478999999764 446667788999999999999885444555566655543 4
Q ss_pred CCcEEEEEeCCCCCcC
Q 040481 121 TVARMLVGNKCDLESI 136 (222)
Q Consensus 121 ~~p~iiv~nK~Dl~~~ 136 (222)
..|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 5799999999999753
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3e-13 Score=111.17 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=104.1
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh-------hhhHHHh
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF-------RAVTSAY 85 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~ 85 (222)
+....+|+|+|.|+||||||+|+|++........|.++.+.....+.+.+. .++++|+||.... .......
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 455679999999999999999999987755555566677777778888774 4679999995321 1223456
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCc--------CCCCCHHHHHHHHHHcCCeE
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWLDELKTHS--DTTVARMLVGNKCDLES--------IRNVSTEEGKSLAEAEGLFF 155 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~ 155 (222)
++.+|++++|+|+.++. ........++.... -...|.++++||.|... ......++.+.+...+.+..
T Consensus 147 i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~ 224 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINS 224 (376)
T ss_dssp HHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCS
T ss_pred HHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccC
Confidence 78899999999999874 23333333343322 14467789999999632 23456667776666665543
Q ss_pred EEEccCCCCCHHHHHH
Q 040481 156 METSALDSTNVKSAFE 171 (222)
Q Consensus 156 ~~~sa~~~~~i~~~~~ 171 (222)
-++-...+...+++.+
T Consensus 225 kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 225 AEIAFRCDATVDDLID 240 (376)
T ss_dssp EEEEECSCCCHHHHHH
T ss_pred CCeeecccCCHHHHHH
Confidence 3333344555666543
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.52 E-value=3.7e-15 Score=122.15 Aligned_cols=102 Identities=11% Similarity=0.019 Sum_probs=62.0
Q ss_pred EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEG 144 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 144 (222)
+.+.++||+|.... .......+|++++|+|+..+.....+.. .+ ...|.++|+||+|+.+..... ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence 45789999995422 2334678999999999987643221111 11 235789999999986321110 111
Q ss_pred HHHHH----------HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 145 KSLAE----------AEGLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 145 ~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
..+.. .++.+++.+||++|.|+++++++|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 22211 22467899999999999999998888653
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.48 E-value=6.2e-14 Score=114.57 Aligned_cols=104 Identities=18% Similarity=0.090 Sum_probs=65.2
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH--
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVST-- 141 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~-- 141 (222)
++.+.||||||....... ....+|++++|+|+.....+..+... . .+.|.++|+||+|+........
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHHHHHH
Confidence 356889999997654332 46889999999999765432111110 0 1357899999999864221111
Q ss_pred HHHHHHHHHc-------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 142 EEGKSLAEAE-------GLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 142 ~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
++........ ..+++++||++|.|++++++.|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1122211121 457899999999999999999988765
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.46 E-value=5.4e-13 Score=104.77 Aligned_cols=111 Identities=13% Similarity=-0.035 Sum_probs=66.8
Q ss_pred EEEEEEeCCCcchhhhhHH------HhhcCCCEEEEEEECCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 65 VKAQIWDTAGQERFRAVTS------AYYRGAVGALIVYDITRRTTFDSISR-WLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
+.+.+|||||......... ..+.. +++++++|+........... +..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4688999999876533211 23455 88888998754332222211 1111111112347999999999986432
Q ss_pred CCCHHHHHH----------------------------HHHHcC--CeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 138 NVSTEEGKS----------------------------LAEAEG--LFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 138 ~~~~~~~~~----------------------------~~~~~~--~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
.. ++..+ ++..++ ++++++||+++.|++++++++.+.+.
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 11 11111 123333 47999999999999999998887654
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.43 E-value=2e-13 Score=120.83 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=95.6
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCccceeEEE-------------------------------------
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS-KATIGVEFQT------------------------------------- 55 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~------------------------------------- 55 (222)
...++|+|+|.+++|||||+|+|++..+.+.. .+.+......
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45579999999999999999999997652211 1111000000
Q ss_pred -----------EEEEE-CCeEEEEEEEeCCCcch-------------hhhhHHHhh-cCCCEEEEEEECCChhhHHHHHH
Q 040481 56 -----------QSMEI-DGKEVKAQIWDTAGQER-------------FRAVTSAYY-RGAVGALIVYDITRRTTFDSISR 109 (222)
Q Consensus 56 -----------~~~~~-~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~vi~v~d~~~~~s~~~~~~ 109 (222)
..+.+ ......+.|+||||... .......++ ..+|++++|+|++....-.....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00111 00112467999999433 223334444 57899999999987543222223
Q ss_pred HHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH--HcC-CeEEEEccCCCCCHHHHHHHHHH
Q 040481 110 WLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAE--AEG-LFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 110 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~-~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
++..+ ...+.|+++|+||.|+.+.............. ..+ .+++++||++|.|++++++.+..
T Consensus 209 ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHH---HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 33333 34568999999999997644433221110000 012 35778999999999999887765
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.41 E-value=1.1e-13 Score=121.67 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=78.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcC--CC----CC-----C-----CccceeEEEEEEEECCeEEEEEEEeCCCcchhhh
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEF--NP----HS-----K-----ATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA 80 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~--~~----~~-----~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 80 (222)
.+|+|+|+.++|||||..+|+.... .. .. + ...++++....+.+...++.++++|||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3789999999999999999963211 10 00 0 0012233333333444456788999999999999
Q ss_pred hHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 81 VTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 81 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
.....++-+|++|+|+|+.++-.-.....|.. +.. .++|.++++||+|..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~---~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK---MGIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH---HTCSCEECCEECCSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCeEEEEeccccc
Confidence 88999999999999999998754333333433 323 346889999999964
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.40 E-value=6.7e-13 Score=108.20 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=63.3
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEE 143 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 143 (222)
++.+.|+||+|...... .....+|.+++++|+..+.....+.... ...|.++++||.|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i--------~~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI--------FELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH--------HHHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH--------hccccEEEEEchhccCchhHHHHH
Confidence 35678999999754322 2357899999999986553221111111 123557788999975322222222
Q ss_pred HHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 144 GKSLAEA----------EGLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 144 ~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
...+... ++.+++.+||.++.|++++++.|.+.+.
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2333221 1467899999999999999998877543
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.40 E-value=9.7e-12 Score=110.64 Aligned_cols=119 Identities=20% Similarity=0.186 Sum_probs=80.8
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCc--------CCC----------CCCCccceeEEEEEEEECC-----eEEEEE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNE--------FNP----------HSKATIGVEFQTQSMEIDG-----KEVKAQ 68 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~ 68 (222)
+.++.-+|+|+|+..+|||||..+|+... ... +....+++.-....+.+.+ ..+.++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 44566799999999999999999996321 100 1111112222222333322 357899
Q ss_pred EEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 69 IWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 69 i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
++|||||..|..-....++-+|++|+|+|+.++-.-....-|..... .++|.++++||+|..
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence 99999999999888899999999999999998765444344444333 347999999999964
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.39 E-value=7.4e-13 Score=106.38 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=78.5
Q ss_pred cchhhhhHHHhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC-HHHHHHHHHHcC
Q 040481 75 QERFRAVTSAYYRGAVGALIVYDITRRT-TFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS-TEEGKSLAEAEG 152 (222)
Q Consensus 75 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 152 (222)
++++..+.+.+++++|++|+|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 4666667777899999999999999986 89988999987765 458999999999997543222 344556677778
Q ss_pred CeEEEEccCCCCCHHHHHHHHH
Q 040481 153 LFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 153 ~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
++++++||++|.|+++++..+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999987653
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.31 E-value=4.2e-11 Score=99.06 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=62.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCccceeEEEEEEEECCe---------------EEEEEEEeCCCcc
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEF-NPHSKATIGVEFQTQSMEIDGK---------------EVKAQIWDTAGQE 76 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~ 76 (222)
.....+|+++|++|+|||||+|+|++... .....|.++.+.....+.+.+. ...+.+||+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34457999999999999999999999765 4444455455544555555541 1357899999943
Q ss_pred h-------hhhhHHHhhcCCCEEEEEEECCC
Q 040481 77 R-------FRAVTSAYYRGAVGALIVYDITR 100 (222)
Q Consensus 77 ~-------~~~~~~~~~~~~d~vi~v~d~~~ 100 (222)
. +...+...++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 23345566789999999999864
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.28 E-value=2.8e-12 Score=105.87 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=53.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCe---------------EEEEEEEeCCCcchh
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGK---------------EVKAQIWDTAGQERF 78 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 78 (222)
...++|+++|.+|||||||+++|++........|+++.+.....+.+.+. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 44579999999999999999999988764444455555544555555432 234889999997654
Q ss_pred hh-------hHHHhhcCCCEEEEEEECCChhh
Q 040481 79 RA-------VTSAYYRGAVGALIVYDITRRTT 103 (222)
Q Consensus 79 ~~-------~~~~~~~~~d~vi~v~d~~~~~s 103 (222)
.. .+..+++.+|++++|+|+.+..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 32 45678899999999999976433
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.28 E-value=3.1e-12 Score=95.93 Aligned_cols=104 Identities=7% Similarity=-0.015 Sum_probs=69.3
Q ss_pred CCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHH---HHHHHhcC-CCCCcEEEEEeCC-CCCcCCCCCHHHHHHH
Q 040481 73 AGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRW---LDELKTHS-DTTVARMLVGNKC-DLESIRNVSTEEGKSL 147 (222)
Q Consensus 73 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~---~~~i~~~~-~~~~p~iiv~nK~-Dl~~~~~~~~~~~~~~ 147 (222)
+|+..+...|..||.++|++|||+|.+|..-++...++ ...+.... -.++|++|++||. |+. ..++..++.+.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e~ 187 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAHE 187 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHHH
Confidence 47888899999999999999999999988644422222 22222222 2578999999985 674 34555555433
Q ss_pred HHH----cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 148 AEA----EGLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 148 ~~~----~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
... ..+.+..|||.+|+|+.+.++||++.+.
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 221 3466899999999999999999987654
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.15 E-value=5.5e-11 Score=93.40 Aligned_cols=106 Identities=8% Similarity=-0.017 Sum_probs=74.3
Q ss_pred CCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHH---HHHHHHHHHhcC-CCCCcEEEEEeC-CCCCcCCCCCHHHHHH
Q 040481 72 TAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDS---ISRWLDELKTHS-DTTVARMLVGNK-CDLESIRNVSTEEGKS 146 (222)
Q Consensus 72 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~---~~~~~~~i~~~~-~~~~p~iiv~nK-~Dl~~~~~~~~~~~~~ 146 (222)
.+|+..+...|..||.++|++|||+|.+|++-++. +.++...+.... ..++|++|++|| .|+. ..++..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHHH
Confidence 46788899999999999999999999999875442 222223332221 256899999996 5775 3455555443
Q ss_pred HHHH----cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 147 LAEA----EGLFFMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 147 ~~~~----~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
.... ..+.+..|||.+|+|+.+.++|+++.+..
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 3221 34568999999999999999999987643
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.92 E-value=1.3e-10 Score=95.78 Aligned_cols=140 Identities=12% Similarity=0.111 Sum_probs=82.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC-----c-CCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh--------hhH
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN-----E-FNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR--------AVT 82 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~ 82 (222)
.+|+++|.+|+|||||+|+|++. . ......+. ++.....+.+... +.++||||..... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999886 1 11112222 2233333444332 6799999953221 112
Q ss_pred HHhh--cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEcc
Q 040481 83 SAYY--RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSA 160 (222)
Q Consensus 83 ~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (222)
..++ ...++++++++....-.+..+.. +......+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 2222 67899999999843311111111 12223356799999999998653333 22334456666776666666
Q ss_pred CCCCCH
Q 040481 161 LDSTNV 166 (222)
Q Consensus 161 ~~~~~i 166 (222)
.+..++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 554444
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.91 E-value=5.8e-09 Score=85.86 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=72.2
Q ss_pred CcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHH----HHH
Q 040481 74 GQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKS----LAE 149 (222)
Q Consensus 74 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~----~~~ 149 (222)
..+.|...+..+++.++++++|+|+.+.. ..|...+..... +.|+++|+||+|+.+. ....+...+ ++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 45778889999999999999999999863 345555555433 5799999999999753 233333333 356
Q ss_pred HcCC---eEEEEccCCCCCHHHHHHHHHHH
Q 040481 150 AEGL---FFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 150 ~~~~---~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
..+. .++.+||++|.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999877653
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=2.6e-09 Score=89.04 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=59.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCC--ccceeEEEEEEEECC--eEEEEEEEeCCCcchh-------------
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKA--TIGVEFQTQSMEIDG--KEVKAQIWDTAGQERF------------- 78 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~------------- 78 (222)
.++++|+|++|+|||||++.|.+..+...... ..+.......+.+.. ....+.++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 36799999999999999999998754321111 111112222222222 2236789999885321
Q ss_pred -hhhHHHhh-------------cC--CC-EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 79 -RAVTSAYY-------------RG--AV-GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 79 -~~~~~~~~-------------~~--~d-~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
...+..++ .. +| +++|+.|...+-+-.. +..+.... .+.|+|+|.||+|...
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh-hCCCEEEEEcchhccc
Confidence 11111111 11 23 3556666655433111 22222222 5689999999999753
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.87 E-value=1.1e-08 Score=87.24 Aligned_cols=152 Identities=16% Similarity=0.081 Sum_probs=84.8
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHh------cCcCC----CCCCCc-----------cceeEEEEEEE-------------
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYA------RNEFN----PHSKAT-----------IGVEFQTQSME------------- 59 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~~------------- 59 (222)
.....|+++|.+||||||++++|. +.... ..+.+. .+.++......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999997 33210 011110 01121111000
Q ss_pred ECCeEEEEEEEeCCCcchhhh-hH---HHh--hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCC
Q 040481 60 IDGKEVKAQIWDTAGQERFRA-VT---SAY--YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVAR-MLVGNKCD 132 (222)
Q Consensus 60 ~~~~~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D 132 (222)
+....+.+.|+||||...... .. ... +..+|.+++|+|+......... ...+... +|+ ++|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~~----~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKDK----VDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHHH----HCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHhh----cCceEEEEeCCc
Confidence 000235678999999653221 11 111 2378999999999876542221 2222221 464 88999999
Q ss_pred CCcCCCCCHHHHHHHHHHcCCeE------------------EEEccCCCCC-HHHHHHHHHHH
Q 040481 133 LESIRNVSTEEGKSLAEAEGLFF------------------METSALDSTN-VKSAFEIVIRE 176 (222)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~~~~-i~~~~~~i~~~ 176 (222)
...... .+.......++|+ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 864221 1222333444443 3368888988 98888877654
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.81 E-value=1.5e-10 Score=95.30 Aligned_cols=136 Identities=11% Similarity=0.129 Sum_probs=75.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCC-----CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh--------hHH
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNP-----HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA--------VTS 83 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~ 83 (222)
.+|+++|.+|+|||||+|+|++..... ......+++.....+.+... +.++||||...... ...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 479999999999999999998863211 01112223333333444332 67999999533211 111
Q ss_pred Hh--hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEcc
Q 040481 84 AY--YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSA 160 (222)
Q Consensus 84 ~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (222)
.+ ....+.++++++......+..+. .+......+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence 12 36678889999874321111111 012222356799999999998653322 22333445556665555443
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.76 E-value=1.7e-08 Score=79.62 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=70.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCC--------CCccceeEEEEEEEECCe--EEEEEEEeCCCcchh-------
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHS--------KATIGVEFQTQSMEIDGK--EVKAQIWDTAGQERF------- 78 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~------- 78 (222)
.++++++|++|+|||||++.|.+...+..- .+. ........+..... ...+.++|++|....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCC-CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999875432210 011 00001111111111 225779999983210
Q ss_pred -----------hhhHH----------HhhcCCCEEEEEEECC-ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040481 79 -----------RAVTS----------AYYRGAVGALIVYDIT-RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136 (222)
Q Consensus 79 -----------~~~~~----------~~~~~~d~vi~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 136 (222)
..... ..+..+++.++++|.. .+-.-.. ...+..+.. . .++++|++|.|....
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCH
Confidence 00000 1123468889999864 3322111 233333433 3 799999999997542
Q ss_pred CCC--CHHHHHHHHHHcCCeEEE
Q 040481 137 RNV--STEEGKSLAEAEGLFFME 157 (222)
Q Consensus 137 ~~~--~~~~~~~~~~~~~~~~~~ 157 (222)
.+. ....+.......++.+++
T Consensus 156 ~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 156 EEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHcCccccC
Confidence 221 112233344556776654
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.73 E-value=2.7e-08 Score=78.90 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=68.8
Q ss_pred EEeCCCcc-hhhhhHHHhhcCCCEEEEEEECCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH
Q 040481 69 IWDTAGQE-RFRAVTSAYYRGAVGALIVYDITRRTTFD--SISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGK 145 (222)
Q Consensus 69 i~D~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 145 (222)
+...||+. .........+..+|+++.|+|+.++.+.. .+.+|+ .+.|+++|+||+|+.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 44578875 34556677789999999999999987653 334432 3579999999999975211 12223
Q ss_pred HHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 146 SLAEAEGLFFMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 146 ~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
++....+.+++.+||.++.|+.+++..+.+.+.+
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 3344457889999999999999999877766543
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.73 E-value=2.5e-08 Score=82.10 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=70.1
Q ss_pred CcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHH----HH
Q 040481 74 GQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSL----AE 149 (222)
Q Consensus 74 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~ 149 (222)
.++.|...+..+++.++++++|+|+.+..+ .|...+.... .+.|+++|+||+|+.+. ....+...++ +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 477888899998899999999999999763 3444443333 25799999999999753 2333333333 45
Q ss_pred HcCC---eEEEEccCCCCCHHHHHHHHHHH
Q 040481 150 AEGL---FFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 150 ~~~~---~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
..+. .++.+||++|.|++++++.+.+.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 5666 68999999999999999877654
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.73 E-value=1.5e-07 Score=78.37 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=82.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCccceeEEEEEEEE-CCeEEEEEEEeCCCcchhhhhHHH-----hhcCC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHS-KATIGVEFQTQSMEI-DGKEVKAQIWDTAGQERFRAVTSA-----YYRGA 89 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~-----~~~~~ 89 (222)
..++++|++|+|||||+|.|.+...+..- ....+.+.....+.+ ....-.+.++|++|.......... .+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 47999999999999999999985322111 111011100000111 111113679999985321111111 22334
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-------cCCCCCHHHH----HHHHH----HcC--
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE-------SIRNVSTEEG----KSLAE----AEG-- 152 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~-------~~~~~~~~~~----~~~~~----~~~-- 152 (222)
+.+++ ++....+. .. ..+...+.. .+.|+++|.||.|+. .-+....+.. +++.. ..+
T Consensus 150 ~~~~~-lS~G~~~k-qr-v~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 150 DFFII-ISATRFKK-ND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp SEEEE-EESSCCCH-HH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCeEE-eCCCCccH-HH-HHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55554 77753221 11 122222222 346999999999963 1122233332 33321 222
Q ss_pred -CeEEEEcc--CCCCCHHHHHHHHHHHHHHH
Q 040481 153 -LFFMETSA--LDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 153 -~~~~~~sa--~~~~~i~~~~~~i~~~~~~~ 180 (222)
..++.+|+ .++.|++++.+.+.+.+-+.
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 35788999 55567999988887765443
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.43 E-value=4.1e-07 Score=76.17 Aligned_cols=142 Identities=17% Similarity=0.125 Sum_probs=78.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC------cC----CCCCCC-----------ccceeEEEEEEEEC------------
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARN------EF----NPHSKA-----------TIGVEFQTQSMEID------------ 61 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~------~~----~~~~~~-----------~~~~~~~~~~~~~~------------ 61 (222)
....|+++|++|+||||++..|... .. ...+.+ ..+.++.......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999988631 11 011111 01111111000000
Q ss_pred -CeEEEEEEEeCCCcchhhhhH----H--HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 62 -GKEVKAQIWDTAGQERFRAVT----S--AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 62 -~~~~~~~i~D~~G~~~~~~~~----~--~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
...+.+.|+||+|........ . .....+|.+++|+|+..++.-.... ..+.... .+..||+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~~---~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEAT---PIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHSC---TTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhhC---CCeEEEEECCCCc
Confidence 012567899999943321111 1 1234579999999998775432222 2333222 2457899999986
Q ss_pred cCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
.. .-.+.......+.|+..++. |+++++
T Consensus 253 ~~----gG~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 253 AK----GGGALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp SS----HHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred cc----ccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence 32 22344555667888776664 555443
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.42 E-value=2.1e-07 Score=73.81 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=36.0
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 76 (222)
...++|+++|.+|||||||+|+|.+...... ..+.++ .....+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT--TSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCee--eeeEEEEeCC---CEEEEECcCcC
Confidence 3568999999999999999999998764322 222222 2222333332 36799999964
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.29 E-value=2e-07 Score=73.15 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=35.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF 78 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 78 (222)
++++++|.+|+|||||+|+|.+...... .++.+++.....+..+. .+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence 6999999999999999999998765322 12222222222222222 4679999996543
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.25 E-value=3e-06 Score=71.02 Aligned_cols=84 Identities=15% Similarity=0.009 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCcchhhhhHH----H--hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCC-c-EEEEEeCCCCCc
Q 040481 64 EVKAQIWDTAGQERFRAVTS----A--YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTV-A-RMLVGNKCDLES 135 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~----~--~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~iiv~nK~Dl~~ 135 (222)
.+.+.|+||||......... . .+..+|.+++|+|+..+... ......+.. .. | ..+|+||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~----~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAFKE----AVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHHHT----TSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHHhh----cccCCeEEEEeCCCCcc
Confidence 34578999999654321111 1 12368999999999776531 112222221 23 4 688899999753
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEE
Q 040481 136 IRNVSTEEGKSLAEAEGLFFMET 158 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~ 158 (222)
. ...+.......+.++..+
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 122334566667775554
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.23 E-value=9.7e-07 Score=73.84 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=54.6
Q ss_pred EEEEEEEeCCCcch--hhhh----HHH--hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 64 EVKAQIWDTAGQER--FRAV----TSA--YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 64 ~~~~~i~D~~G~~~--~~~~----~~~--~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
.+.+.++||||... .+.. ... .....+.+++|+|+..++...... ..+.... .+..||+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a---~~f~~~~---~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA---SRFHQAS---PIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH---HHHHHHC---SSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH---HHHhccc---CCcEEEEecccccc
Confidence 34577999999533 1111 111 112468999999998775433322 2222221 25688999999753
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 040481 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 167 (222)
..-.+.......+.|+..++. |++++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence 223455566677899877775 65553
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.19 E-value=9.4e-07 Score=76.63 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=38.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc---cceeEEEEEEEE-CCeEEEEEEEeCCCcc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKAT---IGVEFQTQSMEI-DGKEVKAQIWDTAGQE 76 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~i~D~~G~~ 76 (222)
.+.++|+|+|.+++|||||+|+|++.........+ .+.........+ ......+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 45689999999999999999999987642111111 111111111111 1223457799999954
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.14 E-value=8.7e-06 Score=64.90 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=56.7
Q ss_pred EEEEEEEeCCCcch--hhhhHH------HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCC
Q 040481 64 EVKAQIWDTAGQER--FRAVTS------AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLE 134 (222)
Q Consensus 64 ~~~~~i~D~~G~~~--~~~~~~------~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~ 134 (222)
.+.+.++||||... ...... .....+|.+++|+|+...... ......+.. ..| ..+|+||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 34578999999765 322111 124568999999999765332 112222322 235 57889999975
Q ss_pred cCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
. ....+.......+.++..++ .|++++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 3 23345566777888887766 56666543
No 229
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.13 E-value=6.8e-06 Score=71.89 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.|+|+|++|||||||++.|.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 59999999999999999999864
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.10 E-value=1.2e-06 Score=70.02 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=61.3
Q ss_pred hHHHhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHHHHHHcCCeEEE
Q 040481 81 VTSAYYRGAVGALIVYDITRRT-TFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV--STEEGKSLAEAEGLFFME 157 (222)
Q Consensus 81 ~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 157 (222)
..+....++|.+++|+|+.++. +...+.+++..... .++|.+||+||+||.+.... ..+....+....+.+++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 3344689999999999999775 34455555554443 45788999999999754220 112334445556889999
Q ss_pred EccCCCCCHHHHHH
Q 040481 158 TSALDSTNVKSAFE 171 (222)
Q Consensus 158 ~sa~~~~~i~~~~~ 171 (222)
+||.++.|+++++.
T Consensus 156 ~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 156 TSSKDQDSLADIIP 169 (307)
T ss_dssp CCHHHHTTCTTTGG
T ss_pred EecCCCCCHHHHHh
Confidence 99999988876654
No 231
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.10 E-value=2e-06 Score=67.41 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=60.8
Q ss_pred CCCcchh-hhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH
Q 040481 72 TAGQERF-RAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEA 150 (222)
Q Consensus 72 ~~G~~~~-~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (222)
.||+... .......+.++|++|.|+|+.++.+.... .+. .. ++|.++|+||+|+.+... .+....+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 4676533 34566778999999999999988763321 011 11 679999999999975311 1222334445
Q ss_pred cCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 151 EGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 151 ~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
.+.++ .+||.++.|+++++..+..
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999998876543
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.01 E-value=1.5e-05 Score=64.38 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=76.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCC----------CC-----------ccceeEEEEEEEEC-------------
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHS----------KA-----------TIGVEFQTQSMEID------------- 61 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~----------~~-----------~~~~~~~~~~~~~~------------- 61 (222)
.--++++|++|+||||+++.|.+...+... .. ..+..+........
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 357899999999999999999653211100 00 00111111000000
Q ss_pred CeEEEEEEEeCCCcchhhhhHHH------hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 62 GKEVKAQIWDTAGQERFRAVTSA------YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 62 ~~~~~~~i~D~~G~~~~~~~~~~------~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
...+.+.++|++|.......... ..-..|..+++.|+...+.. ......+..... ..++++||.|...
T Consensus 209 ~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~---~~~~~~~~~~~~---it~iilTKlD~~a 282 (328)
T 3e70_C 209 ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAI---VEQARQFNEAVK---IDGIILTKLDADA 282 (328)
T ss_dssp HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHH---HHHHHHHHHHSC---CCEEEEECGGGCS
T ss_pred hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHH---HHHHHHHHHhcC---CCEEEEeCcCCcc
Confidence 01123557999996432211111 11236889999998776432 222333332221 3378899999632
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
. .-.+.......+.|+..++ +|++++++
T Consensus 283 ~----~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 283 R----GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp C----CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred c----hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 1 2234556777788877776 67776554
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.83 E-value=4.4e-05 Score=62.26 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=56.5
Q ss_pred hhcCCCEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC-HHHHHHHHHHcCCeEEEEccCC
Q 040481 85 YYRGAVGALIVYDITRRT-TFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS-TEEGKSLAEAEGLFFMETSALD 162 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~sa~~ 162 (222)
...++|.+++|++.. +. +...+..++...... ++|.+||+||+||.+..... .+.........+++++.+||.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 468899999887764 54 455556666555443 46789999999997532100 1112233345688999999999
Q ss_pred CCCHHHHHHH
Q 040481 163 STNVKSAFEI 172 (222)
Q Consensus 163 ~~~i~~~~~~ 172 (222)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999987653
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.80 E-value=1.6e-06 Score=73.67 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=58.7
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch--hhhhH--------H
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER--FRAVT--------S 83 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~ 83 (222)
.....|+++|.+|+||||+.++|....... ..++.............+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999997543211 011100000000000011112235789888632 22222 4
Q ss_pred HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhc
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSISRWLDELKTH 117 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~ 117 (222)
.++....+.++|+|.++. +.+....|+..+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 566667888999999988 456667777766554
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.59 E-value=6.5e-05 Score=63.03 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.6
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.+..-|.|+|++++|||+|+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35567899999999999999999863
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.41 E-value=8.7e-05 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
+++++|++|+|||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997754
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.40 E-value=0.0041 Score=52.06 Aligned_cols=81 Identities=16% Similarity=0.087 Sum_probs=45.2
Q ss_pred EEEEEEEeCCCcchhhhhHH------HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcC
Q 040481 64 EVKAQIWDTAGQERFRAVTS------AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESI 136 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~ 136 (222)
.+.+.|+||||......... .....++.+++|+|+......-.. ...+... .+ .-+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~---~~~f~~~----l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT---AKAFNEA----LPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH---HHHHHHH----SCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH---HHHHhcc----CCCeEEEEecCCCCcc
Confidence 35678999999644322111 124468999999999766432221 2222221 23 2478999997532
Q ss_pred CCCCHHHHHHHHHHcCCeE
Q 040481 137 RNVSTEEGKSLAEAEGLFF 155 (222)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~ 155 (222)
. . .+.......+.|+
T Consensus 256 ~--g--~~l~i~~~~~~Pi 270 (433)
T 2xxa_A 256 G--G--AALSIRHITGKPI 270 (433)
T ss_dssp C--T--HHHHHHHHHCCCE
T ss_pred H--H--HHHHHHHHHCCCe
Confidence 2 1 3334555556553
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00012 Score=53.75 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999764
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.29 E-value=0.00013 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++|+|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999763
No 240
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.19 E-value=0.00064 Score=54.18 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57999999999999999998 43
No 241
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.18 E-value=0.00019 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++|+|++|+|||||++.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999998754
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.18 E-value=0.00019 Score=52.85 Aligned_cols=21 Identities=48% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
++|+|++|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 243
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.18 E-value=0.00075 Score=47.46 Aligned_cols=22 Identities=9% Similarity=0.303 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.|++.|++|+|||++++.+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999988653
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.17 E-value=0.0002 Score=53.29 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 245
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.17 E-value=0.0016 Score=52.37 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=51.1
Q ss_pred EEEEEEEeCCCcchhhhhHH-------Hhh-----cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 040481 64 EVKAQIWDTAGQERFRAVTS-------AYY-----RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKC 131 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 131 (222)
.+.+.|+||||......... ..+ ..+|.+++|+++... .+.+... ..+.. .-...-+|.||.
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~-~~~~~---~~~i~GvVltk~ 264 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQA-EEFSK---VADVSGIILTKM 264 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHH-HHHTT---TSCCCEEEEECG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHH-HHHhh---cCCCcEEEEeCC
Confidence 35678999999654321110 111 347899999999754 2222221 22221 111234789999
Q ss_pred CCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 132 DLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 132 Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
|.... . ..+.......+.|+..+. .|+++++
T Consensus 265 d~~~~--~--g~~~~~~~~~~~Pi~~i~--~Ge~~~d 295 (320)
T 1zu4_A 265 DSTSK--G--GIGLAIKELLNIPIKMIG--VGEKVDD 295 (320)
T ss_dssp GGCSC--T--THHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred CCCCc--h--hHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 96432 1 245566677788866554 3445544
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.16 E-value=0.00021 Score=54.31 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++|+||+|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998753
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.15 E-value=0.0001 Score=58.85 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|||||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999998754
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.14 E-value=0.00022 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.|+++|++|||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.13 E-value=0.00024 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998743
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.09 E-value=0.00023 Score=51.74 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 040481 18 KIVIIGDSAVGKSNLLSRYA 37 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~ 37 (222)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 251
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.08 E-value=0.00027 Score=54.32 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|||||||++.+.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999988654
No 252
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.08 E-value=0.0016 Score=54.37 Aligned_cols=85 Identities=16% Similarity=0.029 Sum_probs=47.5
Q ss_pred EEEEEEeCCCcchhhhhHH------HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040481 65 VKAQIWDTAGQERFRAVTS------AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN 138 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 138 (222)
+.+.++||||......... ...-.+|.+++|+|+...+..- .....+.... + ..-+|+||.|....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av---~~a~~f~~~l--~-i~GVIlTKlD~~~~-- 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL---SVARAFDEKV--G-VTGLVLTKLDGDAR-- 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHH---HHHHHHHHHT--C-CCEEEEESGGGCSS--
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHH---HHHHHHHhcC--C-ceEEEEeCcCCccc--
Confidence 4577999999643321111 1123588999999987553322 2222222221 1 24678999986431
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 040481 139 VSTEEGKSLAEAEGLFFMETS 159 (222)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~s 159 (222)
...+.......+.|+..+.
T Consensus 253 --~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 253 --GGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp --CHHHHHHHHHHCCCEEEEE
T ss_pred --HHHHHHHHHHHCCCEEEEe
Confidence 1234456667788866554
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.07 E-value=0.0003 Score=50.60 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998765
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.07 E-value=0.00028 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-..|+|+|++|+|||||++.|.+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999997643
No 255
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.02 E-value=0.00034 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-|+|+||+|+|||||+++|.+.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5789999999999999999864
No 256
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.01 E-value=0.00038 Score=51.46 Aligned_cols=21 Identities=48% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
|+|+||+||||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.01 E-value=0.00036 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-|+|+||+|||||||++.|.+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999998753
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.01 E-value=0.00032 Score=53.46 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988653
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.01 E-value=0.00037 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 260
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.96 E-value=0.0004 Score=54.24 Aligned_cols=23 Identities=43% Similarity=0.444 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++|+|++|+|||||++.+.+..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 261
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.96 E-value=0.00041 Score=52.47 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.95 E-value=0.00041 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.93 E-value=0.00048 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 264
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.93 E-value=0.00044 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.92 E-value=0.00049 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.|+|+|++||||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 266
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.92 E-value=0.00045 Score=54.05 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998754
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.91 E-value=0.0005 Score=50.58 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 268
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.90 E-value=0.00053 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 269
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.90 E-value=0.00049 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|+.|+|||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 270
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.89 E-value=0.00049 Score=53.74 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999998753
No 271
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.89 E-value=0.0005 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 272
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.88 E-value=0.00055 Score=52.94 Aligned_cols=23 Identities=39% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 273
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.88 E-value=0.00042 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++++|++|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 274
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.88 E-value=0.00052 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 275
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.88 E-value=0.00053 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.|+|+|++||||||+++.|.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999997754
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.88 E-value=0.00058 Score=55.64 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEF 41 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~ 41 (222)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999998653
No 277
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.87 E-value=0.0033 Score=44.17 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
..|++.|++|+|||++++.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999997643
No 278
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.87 E-value=0.00056 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++|+|++|+|||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999885
No 279
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.87 E-value=0.00054 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998753
No 280
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.86 E-value=0.00057 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-|+|+|++|||||||++.|...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5799999999999999999753
No 281
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.86 E-value=0.00058 Score=50.83 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.|+|+|++|||||||++.|.+.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999653
No 282
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.84 E-value=0.00061 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++|+|++|+|||||++.+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999885
No 283
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.84 E-value=0.00063 Score=53.02 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++|+|++|+|||||++.+.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999875
No 284
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.83 E-value=0.00063 Score=50.93 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..|+|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999774
No 285
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.83 E-value=0.00066 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998754
No 286
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.82 E-value=0.00059 Score=53.54 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 287
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.82 E-value=0.00072 Score=52.04 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 040481 17 FKIVIIGDSAVGKSNLLSRYA 37 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~ 37 (222)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 288
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.00058 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999999764
No 289
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.81 E-value=0.00064 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++|+|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6899999999999999999763
No 290
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.80 E-value=0.00064 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.79 E-value=0.00071 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+-.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999998643
No 292
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.79 E-value=0.00047 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..|+|+|++||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998653
No 293
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.78 E-value=0.00067 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998753
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.78 E-value=0.00072 Score=48.62 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 040481 18 KIVIIGDSAVGKSNLLSRY 36 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l 36 (222)
-|+|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 295
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.77 E-value=0.0015 Score=49.01 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=54.2
Q ss_pred EEEEEEeCCCc-chhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH
Q 040481 65 VKAQIWDTAGQ-ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEE 143 (222)
Q Consensus 65 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 143 (222)
+.+.++|+|+. ... .....+..+|.+|+++..+ ..++..+...+..+.... +.++.+|+|+.|.... .. ..+
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~~-~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-KD-GDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-CH-HHH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-hH-HHH
Confidence 45779999876 332 3345677899999998874 445666666666666533 3567899999985420 11 234
Q ss_pred HHHHHHHcCCeEE
Q 040481 144 GKSLAEAEGLFFM 156 (222)
Q Consensus 144 ~~~~~~~~~~~~~ 156 (222)
..+.....+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4455555665544
No 296
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.77 E-value=0.00061 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-.++++|++|+|||||++.+.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999987643
No 297
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.75 E-value=0.00077 Score=48.50 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 298
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.73 E-value=0.00087 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.73 E-value=0.00089 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
.-|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999976
No 300
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.71 E-value=0.00081 Score=53.85 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=22.6
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
....-|+|+|++|||||||++.|.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 344688999999999999999997743
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.70 E-value=0.001 Score=48.13 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
-.|+++|++||||||+++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 302
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.69 E-value=0.001 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||+|.|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998754
No 303
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.69 E-value=0.00091 Score=49.74 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.-|+|+|++|+|||||++.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998664
No 304
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.0074 Score=48.70 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998773
No 305
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.67 E-value=0.00097 Score=51.05 Aligned_cols=21 Identities=14% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-++|+|++|+|||||++.+.+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999998873
No 306
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.67 E-value=0.0025 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|.|++|+|||||++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987643
No 307
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.67 E-value=0.0011 Score=49.28 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.|+++|++||||||+.+.|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.67 E-value=0.00058 Score=52.00 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=14.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh-cC
Q 040481 18 KIVIIGDSAVGKSNLLSRYA-RN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~-~~ 39 (222)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 309
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.66 E-value=0.00087 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++|+|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998743
No 310
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.66 E-value=0.001 Score=48.26 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-|++.|++||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 311
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.64 E-value=0.0027 Score=47.22 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
+++.|++|+|||+|++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998653
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.63 E-value=0.0012 Score=49.93 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 313
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.62 E-value=0.00097 Score=54.36 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++|+|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998754
No 314
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.61 E-value=0.0014 Score=48.82 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 315
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.61 E-value=0.0012 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.-++++|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 316
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.59 E-value=0.00071 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 68999999999999999987643
No 317
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.59 E-value=0.0012 Score=49.08 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999976
No 318
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.59 E-value=0.0011 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|+.|+|||||++.+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998753
No 319
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.59 E-value=0.0095 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..|++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999654
No 320
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.59 E-value=0.0012 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++|+|++|+|||||++.+.+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999998754
No 321
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.58 E-value=0.0012 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++|+|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 322
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.58 E-value=0.0011 Score=49.73 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.56 E-value=0.0012 Score=49.65 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 324
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.56 E-value=0.0012 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998754
No 325
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.56 E-value=0.001 Score=54.37 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.-+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998753
No 326
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.55 E-value=0.0013 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998754
No 327
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.54 E-value=0.0013 Score=54.03 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998754
No 328
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.54 E-value=0.0013 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..|+|+|+.|||||||++.|.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 329
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.53 E-value=0.0013 Score=51.67 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
++++|++|+|||||++++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.53 E-value=0.0018 Score=48.29 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.....|+|+|++|+|||||++.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33467999999999999999999764
No 331
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.51 E-value=0.0016 Score=48.21 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999865
No 332
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.51 E-value=0.0014 Score=53.73 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++++|++|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998754
No 333
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.50 E-value=0.0011 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997744
No 334
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.50 E-value=0.0014 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998754
No 335
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.50 E-value=0.00066 Score=49.47 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.|+|+|++|+|||||++.|.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997643
No 336
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.49 E-value=0.0016 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 337
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.46 E-value=0.0015 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.|+|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
No 338
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.46 E-value=0.0018 Score=47.32 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999854
No 339
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.45 E-value=0.0018 Score=49.96 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=21.3
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhc
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~ 38 (222)
+....+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344557899999999999999998855
No 340
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.43 E-value=0.0024 Score=46.62 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 341
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.43 E-value=0.0017 Score=50.12 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 342
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.42 E-value=0.0017 Score=47.46 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 343
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.41 E-value=0.0018 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.|+++|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 344
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.41 E-value=0.0017 Score=51.82 Aligned_cols=84 Identities=11% Similarity=-0.048 Sum_probs=45.8
Q ss_pred EEEEEeCCCcchhhh------------hHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040481 66 KAQIWDTAGQERFRA------------VTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDL 133 (222)
Q Consensus 66 ~~~i~D~~G~~~~~~------------~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl 133 (222)
.+.++|++|...... ..+......+.++++.|+......-.. +..+.... + ..+|++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~---~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ---AKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH---HHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHH---HHHHHHHc--C-CcEEEEECCcc
Confidence 345889999532211 111233457788889998776542222 22222211 1 23788999986
Q ss_pred CcCCCCCHHHHHHHHHHcCCeEEEEc
Q 040481 134 ESIRNVSTEEGKSLAEAEGLFFMETS 159 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (222)
... . -.+.......+.|+..+.
T Consensus 260 ~a~--g--g~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TAK--G--GVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SCC--C--TTHHHHHHHHCCCEEEEE
T ss_pred ccc--c--cHHHHHHHHHCCCeEEEe
Confidence 432 1 123345666777766554
No 345
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.40 E-value=0.0016 Score=47.75 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 346
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.37 E-value=0.019 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
-.|++.|++|+|||+|++++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 47899999999999999999764
No 347
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.37 E-value=0.0012 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998754
No 348
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.37 E-value=0.0024 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=21.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
...+-|+|+|++|||||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998654
No 349
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.36 E-value=0.0017 Score=52.36 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 350
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.36 E-value=0.0024 Score=49.14 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (222)
....|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 351
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.35 E-value=0.0019 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
--++++|++||||||+++.|.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999965
No 352
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.34 E-value=0.0028 Score=47.01 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (222)
....|+|.|++||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 353
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.34 E-value=0.002 Score=47.77 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (222)
...|+|.|++||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 354
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.34 E-value=0.0027 Score=50.14 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (222)
..-|++.|++||||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999965
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.34 E-value=0.0018 Score=46.90 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 356
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.33 E-value=0.0027 Score=50.27 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=21.8
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.....|+|+|++|||||||++.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988653
No 357
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.33 E-value=0.0018 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 78999999999999999998743
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.32 E-value=0.0023 Score=47.27 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.....|+|.|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34468999999999999999999764
No 359
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.32 E-value=0.0026 Score=47.32 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+|.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 360
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.32 E-value=0.0021 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 361
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.31 E-value=0.0019 Score=53.28 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++|+|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999999874
No 362
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.31 E-value=0.002 Score=48.42 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 363
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.31 E-value=0.002 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.|+|+|++|+|||||++.|.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999763
No 364
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.30 E-value=0.0021 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..|+++|++||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998664
No 365
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.30 E-value=0.0026 Score=50.79 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
...|+|+|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999774
No 366
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0057 Score=48.99 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
..++|.|+||+|||++++.+....
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999997643
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.28 E-value=0.0021 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
No 368
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0029 Score=46.31 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 369
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.26 E-value=0.0025 Score=46.25 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.+++.|++|+|||+|++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998664
No 370
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.26 E-value=0.0023 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 040481 19 IVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~ 40 (222)
|+++|++|+|||||++.+.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999998643
No 371
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.25 E-value=0.0025 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|++|+||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 372
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.24 E-value=0.0023 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 48999999999999999997643
No 373
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.24 E-value=0.0011 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 374
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.0024 Score=49.38 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (222)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3346899999999999999999865
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.21 E-value=0.003 Score=48.82 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 040481 17 FKIVIIGDSAVGKSNLLSRYA 37 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~ 37 (222)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 376
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.21 E-value=0.0035 Score=47.69 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
-.-|+|.|+.|||||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999998775
No 377
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.21 E-value=0.003 Score=46.99 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (222)
..-|+|+|++|+|||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 378
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.20 E-value=0.0024 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-|+|+|++|||||||++.+++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998743
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.19 E-value=0.0026 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999865
No 380
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.18 E-value=0.003 Score=45.82 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..+.++|++|+|||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999763
No 381
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.16 E-value=0.0033 Score=45.00 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 382
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.16 E-value=0.0029 Score=47.71 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-++|+|++|+|||||++.+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999754
No 383
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.12 E-value=0.0044 Score=45.28 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
...|++.|.+|+||||+++.|...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999998653
No 384
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.12 E-value=0.0032 Score=47.65 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+|.|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.11 E-value=0.0027 Score=47.83 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (222)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999854
No 386
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.09 E-value=0.045 Score=43.41 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..|+|.|++|+|||++++.+...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHHh
Confidence 36899999999999999998763
No 387
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.08 E-value=0.0031 Score=47.70 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.08 E-value=0.0034 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..|+|.|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 389
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.08 E-value=0.0029 Score=54.09 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|||||||++.|++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998744
No 390
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.08 E-value=0.0032 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
--|+++|++||||||+++.|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999999965
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.06 E-value=0.0012 Score=49.33 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 392
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.06 E-value=0.0034 Score=48.45 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.|++.|++|+|||+|++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999764
No 393
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0028 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++|+|++|+|||||++.|.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999774
No 394
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.05 E-value=0.0032 Score=46.20 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 395
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.05 E-value=0.0042 Score=45.38 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 396
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.04 E-value=0.0034 Score=47.36 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 397
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.01 E-value=0.0039 Score=44.81 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 398
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.01 E-value=0.0038 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-|++.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 399
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.00 E-value=0.0044 Score=48.11 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999865
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.00 E-value=0.004 Score=45.20 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999866
No 401
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.00 E-value=0.0037 Score=50.78 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
+++|+|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998864
No 402
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.99 E-value=0.0039 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 403
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.99 E-value=0.0036 Score=53.07 Aligned_cols=93 Identities=13% Similarity=0.029 Sum_probs=49.9
Q ss_pred EEEEEEeCCCcchhhhh-------HHHhh-----cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040481 65 VKAQIWDTAGQERFRAV-------TSAYY-----RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCD 132 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~-------~~~~~-----~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 132 (222)
+.+.++||+|....... +.... ...+-+++|+|+..++.--. ....+.... ++ ..+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~---~ak~f~~~~--~i-tgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS---QAKLFHEAV--GL-TGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH---HHHHHHHHT--CC-SEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH---HHHHHHhhc--CC-CEEEEEcCC
Confidence 34678999996432211 11111 12567899999877643111 122222221 12 368899998
Q ss_pred CCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 133 LESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
-. .... .+..+....+.++..+. +|.+++++
T Consensus 450 ~t--akgG--~~lsi~~~~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 450 GT--AKGG--VIFSVADQFGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp GC--SCCT--HHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred Cc--cccc--HHHHHHHHHCCCEEEEe--cCCChhhc
Confidence 53 2222 34556667787766543 45556553
No 404
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.98 E-value=0.0039 Score=45.62 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 405
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.97 E-value=0.0035 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++|+|++|+|||||++.+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987654
No 406
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.96 E-value=0.0041 Score=45.31 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 407
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.96 E-value=0.0037 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.120 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 408
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.94 E-value=0.0043 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
..+++.|++|+|||+|++++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999987643
No 409
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.92 E-value=0.0043 Score=46.89 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
-.+++.|++|+|||+|++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 410
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.92 E-value=0.0039 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
..-++|+|+.|+|||||++.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3467899999999999999999753
No 411
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.91 E-value=0.006 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.|.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998854
No 412
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.90 E-value=0.004 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+|.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 413
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.89 E-value=0.0052 Score=43.53 Aligned_cols=19 Identities=42% Similarity=0.593 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 040481 19 IVIIGDSAVGKSNLLSRYA 37 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~ 37 (222)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999985
No 414
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.89 E-value=0.0046 Score=47.00 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-++|+|++|+|||||+..+.+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999874
No 415
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.89 E-value=0.0036 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.+++.|++|+|||+|++.+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988654
No 416
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.88 E-value=0.0043 Score=52.56 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.++|+|++|+|||||++.|.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999966
No 417
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.88 E-value=0.0063 Score=46.00 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-|+|+|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357789999999999998854
No 418
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.87 E-value=0.016 Score=48.63 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHh
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYA 37 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~ 37 (222)
.+..-|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 456677899999999999999664
No 419
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.87 E-value=0.0047 Score=46.15 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999987
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.86 E-value=0.0044 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|++||||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
No 421
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.86 E-value=0.0032 Score=45.72 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=15.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 422
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.85 E-value=0.0057 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++++|+.|+|||||++.|.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998854
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.84 E-value=0.006 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
+.|+|.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999965
No 424
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.82 E-value=0.022 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..|+|.|++|+|||+|++++...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999654
No 425
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.79 E-value=0.0062 Score=43.65 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 426
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0066 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999998754
No 427
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.78 E-value=0.0054 Score=45.86 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
.-|++.|++|+||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 428
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.77 E-value=0.0053 Score=47.46 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.|+|+|++|+||||+.+.|..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 429
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.77 E-value=0.0048 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999987743
No 430
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.76 E-value=0.0052 Score=50.47 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.++++|++|+|||||++.|.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 688999999999999999986
No 431
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.74 E-value=0.0054 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (222)
.+.|+|.|++|+||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
No 432
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.73 E-value=0.0055 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.73 E-value=0.0054 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999998764
No 434
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.70 E-value=0.0061 Score=46.41 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.-.-|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998664
No 435
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.68 E-value=0.0057 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..+++.|++|+|||+|++++...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47899999999999999999763
No 436
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.65 E-value=0.0086 Score=44.31 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.....|++.|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998653
No 437
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.63 E-value=0.0083 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999998754
No 438
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.63 E-value=0.0062 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..+++.|++|+|||+|++++...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999999764
No 439
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.63 E-value=0.0048 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.+++.||||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988865
No 440
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.63 E-value=0.0067 Score=46.68 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..|++.|++|+|||+|++++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999763
No 441
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.59 E-value=0.0073 Score=47.46 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYA 37 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~ 37 (222)
..+.|+|.|++||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999986
No 442
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.59 E-value=0.005 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999997743
No 443
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.58 E-value=0.007 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-++|.|++|+|||+|++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998653
No 444
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.58 E-value=0.0067 Score=48.10 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.|++.|++|+|||+|++++.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999764
No 445
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.57 E-value=0.0072 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.57 E-value=0.0064 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 447
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.57 E-value=0.0075 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|+.|+|||||++.|.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998854
No 448
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.55 E-value=0.0056 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999987643
No 449
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.53 E-value=0.0049 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999887643
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.52 E-value=0.0079 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
No 451
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.49 E-value=0.0071 Score=47.80 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
..-+++.|+||+|||+|++++....
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999987643
No 452
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.47 E-value=0.011 Score=46.81 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
+.-.+++.|++|+|||++++.+....
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 33479999999999999999987643
No 453
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.47 E-value=0.012 Score=45.77 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.....+++.|++|+|||+|++++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34468999999999999999999764
No 454
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.46 E-value=0.0077 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.+++.|++|+|||+|++.+.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998764
No 455
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.44 E-value=0.0075 Score=47.19 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.44 E-value=0.0069 Score=46.97 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=21.5
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..+...|+|.|.+||||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 344568999999999999999988653
No 457
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.44 E-value=0.038 Score=40.64 Aligned_cols=85 Identities=14% Similarity=-0.053 Sum_probs=55.2
Q ss_pred EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCcCCCCCHH
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHS--DTTVARMLVGNKCDLESIRNVSTE 142 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~ 142 (222)
+.+.++|+|+.. .......+..+|.+|+++..+... ..+...+..+.... ....++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 567799999865 334455667799999999886554 55666666665543 245677899999985321 223
Q ss_pred HHHHHHHHcCCeEE
Q 040481 143 EGKSLAEAEGLFFM 156 (222)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (222)
+..++...++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 34455555565544
No 458
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.43 E-value=0.0065 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999987643
No 459
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.42 E-value=0.0081 Score=45.75 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (222)
.....|+|+|++|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999998865
No 460
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.0086 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 040481 19 IVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~ 40 (222)
++|+|+.|+|||||++.|.+..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999998864
No 461
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.38 E-value=0.01 Score=46.93 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (222)
....+++.|++|+|||+|++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987654
No 462
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.35 E-value=0.0093 Score=48.72 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 040481 19 IVIIGDSAVGKSNLLSRYA 37 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~ 37 (222)
.+|+|+.|+|||||++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999986
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.26 E-value=0.011 Score=43.97 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999997654
No 464
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.23 E-value=0.0021 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-+++.|++|+||||++-.+..
T Consensus 14 i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 567789999999998876644
No 465
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.23 E-value=0.011 Score=45.01 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=20.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (222)
...+++.++|++||||||+...|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998854
No 466
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.23 E-value=0.01 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.-|+++|++||||||+.++|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999998653
No 467
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.22 E-value=0.0097 Score=47.17 Aligned_cols=85 Identities=9% Similarity=0.078 Sum_probs=48.1
Q ss_pred EEEEEEeCCCcchhhhh----HHHhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040481 65 VKAQIWDTAGQERFRAV----TSAYYR--GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN 138 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 138 (222)
+.+.++||+|....... ....+. ..+.+++|+|++.. ...+..+...+. ... ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence 45779999996543321 112332 35788999988754 233333333222 112 22466799997532
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 040481 139 VSTEEGKSLAEAEGLFFMETS 159 (222)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~s 159 (222)
...+.......+.++..+.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2255567777888765544
No 468
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.21 E-value=0.011 Score=46.60 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..+++.|++|+|||+|++++...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 469
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.18 E-value=0.13 Score=40.76 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
+++-|++|+|||++++++...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455677999999999999654
No 470
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.17 E-value=0.01 Score=48.16 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++|.|++|+|||||++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 471
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.011 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
--|++.||||+|||+|++++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 472
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.15 E-value=0.013 Score=43.24 Aligned_cols=21 Identities=43% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 473
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.13 E-value=0.011 Score=47.55 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 040481 19 IVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~ 40 (222)
+++.|++|+||||+++.+.+.-
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999997653
No 474
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.012 Score=49.15 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.-.|++.||||+|||.|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999999764
No 475
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.08 E-value=0.014 Score=43.52 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 040481 18 KIVIIGDSAVGKSNLLSRYA 37 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~ 37 (222)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 34788999999999999884
No 476
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.06 E-value=0.013 Score=46.70 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=50.5
Q ss_pred EEEEEEeCCCcchhhhhH-------HHhh-----cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040481 65 VKAQIWDTAGQERFRAVT-------SAYY-----RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCD 132 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~-------~~~~-----~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 132 (222)
+.+.++|+||........ ...+ ..++.+++|+|+..++ +.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 346799999953222111 1111 2478899999997542 22222 12222221 1 2357789999
Q ss_pred CCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 133 LESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
... .. -.+.......+.|+..+.. |+.+++
T Consensus 261 ~~~--~g--G~~l~~~~~~~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 261 GTA--KG--GITLAIARELGIPIKFIGV--GEKAED 290 (306)
T ss_dssp GCS--CT--THHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred Ccc--ch--HHHHHHHHHHCCCEEEEeC--CCChhh
Confidence 642 22 2366677888888776653 344544
No 477
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.05 E-value=0.0018 Score=49.43 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARNEF 41 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~ 41 (222)
++|+|++|+|||||++++.+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46889999999999999977543
No 478
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.04 E-value=0.016 Score=47.06 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
.+|+++|++|+||||+.+.|..
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999999988754
No 479
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.03 E-value=0.012 Score=47.85 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-+.|+|++|+|||||++.+.+..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998753
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.03 E-value=0.013 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 481
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.013 Score=48.98 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.--|++.||||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999999764
No 482
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.00 E-value=0.013 Score=46.90 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
...|++.|++|+|||+|++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999754
No 483
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.00 E-value=0.013 Score=44.44 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877754
No 484
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.98 E-value=0.015 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEF 41 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~ 41 (222)
.++|+|+.|+|||||++.|.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999997544
No 485
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.97 E-value=0.014 Score=47.08 Aligned_cols=22 Identities=45% Similarity=0.681 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
No 486
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.92 E-value=0.014 Score=46.86 Aligned_cols=21 Identities=14% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 487
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.03 Score=42.45 Aligned_cols=26 Identities=8% Similarity=-0.051 Sum_probs=19.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
..+=|++.|+++.||++|++++.+..
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CceEEEecCcccccHHHHHHHHhccc
Confidence 33444444999999999999998874
No 488
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.89 E-value=0.0066 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.+++.|++|+|||+|++++...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3889999999999999999764
No 489
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.015 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
--|++.||||+|||.|++++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 490
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.83 E-value=0.015 Score=49.60 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-|+++|++|+|||+|++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999764
No 491
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.82 E-value=0.015 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999987643
No 492
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.81 E-value=0.0087 Score=54.89 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|+.|+|||||++.|.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 493
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.80 E-value=0.017 Score=46.07 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-|+|+||+|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999999653
No 494
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.80 E-value=0.018 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-|+|+|++|||||||...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998654
No 495
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.79 E-value=0.018 Score=45.86 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..+++.|++|+|||+|+.++...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998653
No 496
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.76 E-value=0.014 Score=47.35 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
-.++|.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.74 E-value=0.015 Score=47.08 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
-.+++.|++|+|||+|++++...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998654
No 498
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.74 E-value=0.017 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-|+++|++|+|||+|++++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 499
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.70 E-value=0.017 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
-.|++.|++|+|||+|++++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999764
No 500
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.69 E-value=0.017 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
--+++.|++|+|||+|++++.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
Done!