BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040483
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana
GN=RBOHE PE=2 SV=2
Length = 952
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 147/247 (59%), Gaps = 68/247 (27%)
Query: 21 GRAMLPIFLNDLSRNSQQEQA-----QDLVELTIELE--DDAVV---------------- 57
G AMLP+FLNDLSRNS + + ++LVE+T+EL+ DD+++
Sbjct: 33 GGAMLPVFLNDLSRNSGESGSGSSWERELVEVTLELDVGDDSILVCGMSEAASVDSRARS 92
Query: 58 ------------------FRQKFG-------WLRSGSSP------DIEERT------MSG 80
RQK G W + SS D+E +T ++
Sbjct: 93 VDLVTARLSRNLSNASTRIRQKLGKLLRSESWKTTTSSTAGERDRDLERQTAVTLGILTA 152
Query: 81 RDERRIKAKLQRTRSGAKRALNGLRFISKAAGASDAE--------ELRRLVESTFESLSE 132
RD+R+ AKLQR+ S A+RAL GL+FI+K + ++ + VE FESLS+
Sbjct: 153 RDKRKEDAKLQRSTSSAQRALKGLQFINKTTRGNSCVCDWDCDCDQMWKKVEKRFESLSK 212
Query: 133 DGLLAREDFGECIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDAR 192
+GLLAR+DFGEC+GMVDSK+FAV +FDALARRR QK+ KITK+EL +FWLQISDQSFDAR
Sbjct: 213 NGLLARDDFGECVGMVDSKDFAVSVFDALARRRRQKLEKITKDELHDFWLQISDQSFDAR 272
Query: 193 LQIFFDM 199
LQIFFDM
Sbjct: 273 LQIFFDM 279
>sp|Q948U0|RBOHA_SOLTU Respiratory burst oxidase homolog protein A OS=Solanum tuberosum
GN=RBOHA PE=1 SV=1
Length = 963
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 81/110 (73%), Gaps = 9/110 (8%)
Query: 92 RTRSGAKRALNGLRFIS--KAAGASDAEELRRLVESTFESLSEDGLLAREDFGECIGMVD 149
RTRS A +AL GL+FIS K G ++ VE+ F L++DG L R DF +CIGM D
Sbjct: 185 RTRSSAHKALRGLKFISNNKTNGWNE-------VENNFAKLAKDGYLYRSDFAQCIGMKD 237
Query: 150 SKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDM 199
SKEFA+ +FDAL+RRR K+ KI+KEEL E+W QI+DQSFD+RLQIFFDM
Sbjct: 238 SKEFALELFDALSRRRRLKVDKISKEELYEYWSQITDQSFDSRLQIFFDM 287
>sp|O48538|RBOHF_ARATH Respiratory burst oxidase homolog protein F OS=Arabidopsis thaliana
GN=RBOHF PE=1 SV=1
Length = 944
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 87/132 (65%), Gaps = 3/132 (2%)
Query: 68 GSSPDIEERTMSGRDERRIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTF 127
G+ + + R R+ +A+L RTRS A+RAL GLRFIS D V+S F
Sbjct: 147 GAGGGLVNSALEARALRKQRAQLDRTRSSAQRALRGLRFISNKQKNVDGWND---VQSNF 203
Query: 128 ESLSEDGLLAREDFGECIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQ 187
E ++G + R DF +CIGM DSKEFA+ +FDAL+RRR K+ KI +EL E+W QI+D+
Sbjct: 204 EKFEKNGYIYRSDFAQCIGMKDSKEFALELFDALSRRRRLKVEKINHDELYEYWSQINDE 263
Query: 188 SFDARLQIFFDM 199
SFD+RLQIFFD+
Sbjct: 264 SFDSRLQIFFDI 275
>sp|Q948T9|RBOHB_SOLTU Respiratory burst oxidase homolog protein B OS=Solanum tuberosum
GN=RBOHB PE=1 SV=1
Length = 867
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 89 KLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLAREDFGECIGMV 148
K+ R++SGA RAL GL+F++K G E VES F+ L+ +G+L + FG+CIGM
Sbjct: 103 KIDRSKSGAARALRGLQFMNKNVGTEGWSE----VESRFDQLAVNGMLTKSLFGQCIGMK 158
Query: 149 DSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDM 199
+S EFA +FDALAR+R +TK+EL EFW QI+D SFDARLQ FFDM
Sbjct: 159 ESSEFAEELFDALARKRCITSPAVTKDELREFWEQITDTSFDARLQTFFDM 209
>sp|Q9SBI0|RBOHB_ARATH Respiratory burst oxidase homolog protein B OS=Arabidopsis thaliana
GN=RBOHB PE=2 SV=1
Length = 843
Score = 113 bits (282), Expect = 1e-24, Method: Composition-based stats.
Identities = 72/169 (42%), Positives = 96/169 (56%), Gaps = 23/169 (13%)
Query: 42 QDLVELTIELEDDAVVFRQKFGWLRSGSSPDIEERTMSGRDERRIKA------KLQRTRS 95
+D VE+T+E+ D+ + + LRS +SGR + +K+ +L R++S
Sbjct: 30 EDYVEITLEVRDETINTMKAKATLRS---------VLSGRLKTMVKSLSFASRRLDRSKS 80
Query: 96 -GAKRALNGLRFISK--AAGASDAEELRRLVESTFESLSEDGLLAREDFGECIGMVDSKE 152
GA AL GLRFI+K A G E V F+ L+ +G L + FG CIGMV+S E
Sbjct: 81 FGAMFALRGLRFIAKNDAVGRGWDE-----VAMRFDKLAVEGKLPKSKFGHCIGMVESSE 135
Query: 153 FAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDMYN 201
F +F+AL RRRG ITK EL EFW QI+ SFD RLQIFFDM +
Sbjct: 136 FVNELFEALVRRRGTTSSSITKTELFEFWEQITGNSFDDRLQIFFDMVD 184
>sp|O81210|RBOHC_ARATH Respiratory burst oxidase homolog protein C OS=Arabidopsis thaliana
GN=RBOHC PE=2 SV=2
Length = 905
Score = 109 bits (273), Expect = 1e-23, Method: Composition-based stats.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 40/203 (19%)
Query: 33 SRNSQQEQAQDLVELTIELEDDAVVFR--QKFGWLRSGSSPDI--------EERT----- 77
+ NSQ+ + V+LT++++DD V + G SP++ E++T
Sbjct: 43 AENSQRTRTAPYVDLTVDVQDDTVSVHSLKMEGGSSVEESPELTLLKRNRLEKKTTVVKR 102
Query: 78 -----------------MSGRDERRIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELR 120
+ GR R AKL RT+S A +AL GL+FISK G +
Sbjct: 103 LASVSHELKRLTSVSGGIGGRKPPR-PAKLDRTKSAASQALKGLKFISKTDGGAGWSA-- 159
Query: 121 RLVESTFESLSED--GLLAREDFGECIGMVDSKEFAVGIFDALARRRGQKIGKITKEELG 178
VE F ++ GLL R FGECIGM SK+FA+ +FDALARRR I ++L
Sbjct: 160 --VEKRFNQITATTGGLLLRTKFGECIGMT-SKDFALELFDALARRRNITGEVIDGDQLK 216
Query: 179 EFWLQISDQSFDARLQIFFDMYN 201
EFW QI+DQSFD+RL+ FFDM +
Sbjct: 217 EFWEQINDQSFDSRLKTFFDMVD 239
>sp|Q9SUT8|RBOHI_ARATH Probable respiratory burst oxidase homolog protein I OS=Arabidopsis
thaliana GN=RBOHI PE=3 SV=2
Length = 941
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 75/112 (66%), Gaps = 7/112 (6%)
Query: 91 QRTRSGAKRALNGLRFIS-KAAGASDAEELRRLVESTFESLSEDGLLAREDFGECIGMVD 149
R SG +RA++GL+FIS K G D + V++ F LS+DG L + DF CIG+ +
Sbjct: 159 NRDGSGTERAIHGLKFISSKENGIVDWND----VQNNFAHLSKDGYLFKSDFAHCIGLEN 214
Query: 150 --SKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDM 199
SKEFA +FDAL RRR + KI +EL EFW QI+D+SFD+RLQIFF+M
Sbjct: 215 ENSKEFADELFDALCRRRRIMVDKINLQELYEFWYQITDESFDSRLQIFFNM 266
>sp|Q2HXL0|RBOHC_SOLTU Respiratory burst oxidase homolog protein C OS=Solanum tuberosum
GN=RBOHC PE=1 SV=2
Length = 938
Score = 104 bits (260), Expect = 4e-22, Method: Composition-based stats.
Identities = 60/132 (45%), Positives = 79/132 (59%), Gaps = 8/132 (6%)
Query: 74 EERTMSGRDERRI-KAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSE 132
E + ++ ++R I + R +S A AL GL+FISK G + VE F+ ++
Sbjct: 131 ELKRLASLNKRPIPTGRFDRNKSAAAHALKGLKFISKTDGGAGWAA----VEKRFDEITA 186
Query: 133 --DGLLAREDFGECIGM-VDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSF 189
GLL R FGECIGM +SKEFA ++DALARRR I K +L EFW Q++DQSF
Sbjct: 187 PTTGLLPRAKFGECIGMNKESKEFAGELYDALARRRNITTDSINKAQLKEFWDQVADQSF 246
Query: 190 DARLQIFFDMYN 201
D RLQ FFDM +
Sbjct: 247 DTRLQTFFDMVD 258
>sp|Q5ZAJ0|RBOHB_ORYSJ Respiratory burst oxidase homolog protein B OS=Oryza sativa subsp.
japonica GN=RBOHB PE=1 SV=1
Length = 905
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 74/116 (63%), Gaps = 4/116 (3%)
Query: 84 RRIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLAREDFGE 143
+R++ +L RT+S A AL GL+F++ G VE F L DG+L R FG+
Sbjct: 129 KRVRKRLDRTKSSAAVALKGLQFVTAKVGNDGWAA----VEKRFNQLQVDGVLLRSRFGK 184
Query: 144 CIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDM 199
CIGM S EFAV +FD+LAR+RG +TK+EL +F+ Q++DQ FD RL+ FFDM
Sbjct: 185 CIGMDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDM 240
>sp|Q6J2K5|RBOHB_ORYSI Respiratory burst oxidase homolog protein B OS=Oryza sativa subsp.
indica GN=RBOHB PE=2 SV=1
Length = 905
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 74/116 (63%), Gaps = 4/116 (3%)
Query: 84 RRIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLAREDFGE 143
+R++ +L RT+S A AL GL+F++ G VE F L DG+L R FG+
Sbjct: 129 KRVRKRLDRTKSSAAVALKGLQFVTAKVGNDGWAA----VEKRFNQLQVDGVLLRSRFGK 184
Query: 144 CIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDM 199
CIGM S EFAV +FD+LAR+RG +TK+EL +F+ Q++DQ FD RL+ FFDM
Sbjct: 185 CIGMDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDM 240
>sp|Q2HXK9|RBOHD_SOLTU Respiratory burst oxidase homolog protein D OS=Solanum tuberosum
GN=RBOHD PE=1 SV=2
Length = 858
Score = 102 bits (253), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/115 (47%), Positives = 75/115 (65%), Gaps = 7/115 (6%)
Query: 90 LQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLS--EDGLLAREDFGECIGM 147
R+ + A+ AL G +FISK G S + V+ F+ L+ D LL R FGECIGM
Sbjct: 97 FDRSSTAAQNALKGFKFISKTDGGSGWDT----VQQRFDELTATSDSLLPRAKFGECIGM 152
Query: 148 -VDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDMYN 201
+S+ FA+ +F+ALARRR G I+KE+L EFW QI++QSFD+RL+ FFDM +
Sbjct: 153 NRESEGFALELFNALARRRNITSGCISKEQLKEFWDQIANQSFDSRLRTFFDMVD 207
>sp|O81209|RBOHA_ARATH Respiratory burst oxidase homolog protein A OS=Arabidopsis thaliana
GN=RBOHA PE=2 SV=2
Length = 902
Score = 101 bits (251), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/116 (49%), Positives = 74/116 (63%), Gaps = 7/116 (6%)
Query: 88 AKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTF--ESLSEDGLLAREDFGECI 145
AKL+R++S A+ AL GL+FI+K G + E VE F +++ +GLL R FGECI
Sbjct: 124 AKLRRSKSRAELALKGLKFITKTDGVTGWPE----VEKRFYVMTMTTNGLLHRSRFGECI 179
Query: 146 GMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDMYN 201
GM S EFA+ +FDALARR I EL EFW QI+DQ FD+RL+ FF M +
Sbjct: 180 GM-KSTEFALALFDALARRENVSGDSININELKEFWKQITDQDFDSRLRTFFAMVD 234
>sp|Q9SW17|RBOHG_ARATH Putative respiratory burst oxidase homolog protein G OS=Arabidopsis
thaliana GN=RBOHG PE=2 SV=2
Length = 849
Score = 98.6 bits (244), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/115 (47%), Positives = 76/115 (66%), Gaps = 7/115 (6%)
Query: 89 KLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSE--DGLLAREDFGECIG 146
+L R++S A +AL GL+ ISK +D +VE + ++ DGLL R FGECIG
Sbjct: 80 RLDRSKSTAGQALKGLKIISK----TDGNAAWTVVEKRYLKITANTDGLLLRSKFGECIG 135
Query: 147 MVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDMYN 201
M +SKEFA+ +FDALAR+ K IT+ EL +FW QI+D+SFD+RL FFD+ +
Sbjct: 136 M-NSKEFALELFDALARKSHLKGDVITETELKKFWEQINDKSFDSRLITFFDLMD 189
>sp|Q9FIJ0|RBOHD_ARATH Respiratory burst oxidase homolog protein D OS=Arabidopsis thaliana
GN=RBOHD PE=1 SV=1
Length = 921
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 69/114 (60%), Gaps = 9/114 (7%)
Query: 89 KLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSED--GLLAREDFGECIG 146
+ RT S A AL GL+FI+ A A V+ F+ LS D GLL F EC+G
Sbjct: 157 RFDRTSSAAIHALKGLKFIATKTAAWPA------VDQRFDKLSADSNGLLLSAKFWECLG 210
Query: 147 M-VDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDM 199
M +SK+FA +F ALARR ITKE+L FW QISD+SFDA+LQ+FFDM
Sbjct: 211 MNKESKDFADQLFRALARRNNVSGDAITKEQLRIFWEQISDESFDAKLQVFFDM 264
>sp|Q9FJD6|RBOHH_ARATH Putative respiratory burst oxidase homolog protein H OS=Arabidopsis
thaliana GN=RBOHH PE=3 SV=1
Length = 886
Score = 90.9 bits (224), Expect = 7e-18, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 64 WLRSGS--SPDIEERTMSGRDERRIKAK-----LQRTRSGAKRALNGLRFISKAAGASDA 116
W +SG+ SP + G + K ++RT S A R L LRF+ + +
Sbjct: 64 WRKSGNLGSPSTRKSGNLGPPTNAVPKKTGPQRVERTTSSAARGLQSLRFLDRTVTGRER 123
Query: 117 EELRRLVESTFESLSEDGLLAREDFGECIGMVDSKEFAVGIFDALARRRG-QKIGKITKE 175
+ R +E+ F S DG L +E FG CIGM D+ EFA +++AL RRR + I KE
Sbjct: 124 DAWRS-IENRFNQFSVDGKLPKEKFGVCIGMGDTMEFAAEVYEALGRRRQIETENGIDKE 182
Query: 176 ELGEFWLQISDQSFDARLQIFFDM 199
+L FW + + D RLQIFFDM
Sbjct: 183 QLKLFWEDMIKKDLDCRLQIFFDM 206
>sp|Q9LZU9|RBOHJ_ARATH Putative respiratory burst oxidase homolog protein J OS=Arabidopsis
thaliana GN=RBOHJ PE=3 SV=2
Length = 912
Score = 89.4 bits (220), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 89 KLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLAREDFGECIGMV 148
+++RT S A R L LRF+ + + + R +E+ F + DG L ++ FG CIGM
Sbjct: 106 RVERTTSSAARGLQSLRFLDRTVTGRERDSWRS-IENRFNQFAVDGRLPKDKFGVCIGMG 164
Query: 149 DSKEFAVGIFDALARRRGQKI-GKITKEELGEFWLQISDQSFDARLQIFFDM 199
D+ EFA +++AL RRR K I KE+L FW + + D RLQIFFDM
Sbjct: 165 DTLEFAAKVYEALGRRRQIKTENGIDKEQLKLFWEDMIKKDLDCRLQIFFDM 216
>sp|Q8UE09|RPOC_AGRT5 DNA-directed RNA polymerase subunit beta' OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=rpoC PE=3 SV=2
Length = 1402
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL ++ LL+ E++ + +F A I++ LA +KI + E
Sbjct: 147 VTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTAMIGAEAIYEMLASMNLEKIAGDLRAE 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + F RL+I F + N +++V+ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKFMKRLKIVENFMESGNRPEWMIMKVVPVIPPDLRPLV 255
>sp|A6U852|RPOC_SINMW DNA-directed RNA polymerase subunit beta' OS=Sinorhizobium medicae
(strain WSM419) GN=rpoC PE=3 SV=1
Length = 1401
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E+ LL+ E++ + +F A I++ LA +KI + E
Sbjct: 147 VTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTAMIGAEAIYEMLASMNLEKIAGDLRSE 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
+ E + + RL+I F + N +++V+ +IPPD PL+
Sbjct: 207 MAETTSDLKQKKLMKRLKIVENFMESGNRPEWMIMKVVPVIPPDLRPLV 255
>sp|Q92QH6|RPOC_RHIME DNA-directed RNA polymerase subunit beta' OS=Rhizobium meliloti
(strain 1021) GN=rpoC PE=3 SV=1
Length = 1401
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E+ LL+ E++ + +F A I++ LA +KI + E
Sbjct: 147 VTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTAMIGAEAIYEMLASMNLEKIAGDLRSE 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
+ E + + RL+I F + N +++V+ +IPPD PL+
Sbjct: 207 MAETTSDLKQKKLMKRLKIVENFMESGNRPEWMIMKVVPVIPPDLRPLV 255
>sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=Mus musculus GN=Trim67
PE=2 SV=1
Length = 768
Score = 35.4 bits (80), Expect = 0.33, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 21/140 (15%)
Query: 73 IEERTMSGRDERRIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSE 132
+EE S + + + A ++ ++ +ALNG+ + A +A+E +++ + + E
Sbjct: 314 LEEGRHSKHEVKPLGATWKQHKAQLSQALNGV-----SDKAKEAKEFLVQLKNILQQIQE 368
Query: 133 DGLLAREDFGEC-IGMVDSKEFAVGIFDALARRRGQKIGKITKE---ELGEFWLQISDQS 188
+GL D+ C + D+ + DAL R++ + + K+TKE +L W QI+ +
Sbjct: 369 NGL----DYEACLVAQCDA------LVDALTRQKAKLLTKVTKEREHKLKMVWDQINHCT 418
Query: 189 FDARLQIFFDMYNHLLQVIR 208
R + + L+VI+
Sbjct: 419 LKLRQST--GLMEYCLEVIK 436
>sp|A0KKI5|RSMF_AERHH Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=rsmF PE=3 SV=2
Length = 475
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 122 LVESTFESLSEDGLLA--------REDFGECIGMVDSKEFAVGIFDALARRRGQKIGKIT 173
L+ES F +L G+L +E+ C ++D K A FD+LA T
Sbjct: 228 LLESAFHALKPGGVLVYSTCTLSLQENQAVCQSLLD-KFGAAFSFDSLADLFPAAEQACT 286
Query: 174 KEELGEFWLQISDQS--FDARLQIFFDMYNHLLQVIRLIPPDFNPLLSRELEPL 225
E W QI D F ARL+ + + N + + +L F PL ++E EP+
Sbjct: 287 PEGYLHVWPQIFDSEGFFVARLRKHYSVPNTMFKPGKLGKFPFLPLPAKESEPM 340
>sp|Q2K9M3|RPOC_RHIEC DNA-directed RNA polymerase subunit beta' OS=Rhizobium etli (strain
CFN 42 / ATCC 51251) GN=rpoC PE=3 SV=1
Length = 1402
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 20/143 (13%)
Query: 85 RIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLAREDFGE- 143
RI L T +R L +I G + +E + L E E+ +LA +++GE
Sbjct: 124 RISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLTE-------EEYMLAVDEYGED 176
Query: 144 -CIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQI---FFDM 199
M+ ++ I++ LA +KI + EL + + + RL+I F +
Sbjct: 177 QFTAMIGAE----AIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMES 232
Query: 200 YNH----LLQVIRLIPPDFNPLL 218
N +++V+ +IPPD PL+
Sbjct: 233 GNRPEWMIMKVVPVIPPDLRPLV 255
>sp|Q6FZM0|RPOC_BARQU DNA-directed RNA polymerase subunit beta' OS=Bartonella quintana
(strain Toulouse) GN=rpoC PE=3 SV=1
Length = 1402
Score = 34.3 bits (77), Expect = 0.73, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ ES SL LL+ E++ I +F A I++ LA +KI + E
Sbjct: 147 VTESGLTSLKLHQLLSEEEYMLAIDEFGEDQFTAMIGAEAIYELLAGMELEKIANDLRVE 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E ++ + RL+I F + N +++ I +IPPD PL+
Sbjct: 207 LSETTSELKQKKLIKRLKIVENFLESGNRPEWMIMKTIPVIPPDLRPLV 255
>sp|B3PW60|RPOC_RHIE6 DNA-directed RNA polymerase subunit beta' OS=Rhizobium etli (strain
CIAT 652) GN=rpoC PE=3 SV=1
Length = 1402
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 20/143 (13%)
Query: 85 RIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLAREDFGE- 143
RI L T +R L +I G + +E + L E E+ +LA +++GE
Sbjct: 124 RISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSE-------EEYMLAVDEYGED 176
Query: 144 -CIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQI---FFDM 199
M+ ++ I++ LA +KI + EL + + + RL+I F +
Sbjct: 177 QFTAMIGAE----AIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMES 232
Query: 200 YNH----LLQVIRLIPPDFNPLL 218
N +++V+ +IPPD PL+
Sbjct: 233 GNRPEWMIMKVVPVIPPDLRPLV 255
>sp|Q6ZTA4|TRI67_HUMAN Tripartite motif-containing protein 67 OS=Homo sapiens GN=TRIM67
PE=2 SV=3
Length = 783
Score = 33.9 bits (76), Expect = 0.90, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 21/140 (15%)
Query: 73 IEERTMSGRDERRIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSE 132
+EE + + + + A ++ ++ +ALNG+ + A +A+E +++ + + E
Sbjct: 327 LEEGRHAKHEVKPLGAMWKQHKAQLSQALNGV-----SDKAKEAKEFLVQLKNILQQIQE 381
Query: 133 DGLLAREDFGEC-IGMVDSKEFAVGIFDALARRRGQKIGKITKE---ELGEFWLQISDQS 188
+GL D+ C + D+ + DAL R++ + + K+TKE +L W QI+ +
Sbjct: 382 NGL----DYEACLVAQCDA------LVDALTRQKAKLLTKVTKEREHKLKMVWDQINHCT 431
Query: 189 FDARLQIFFDMYNHLLQVIR 208
R + + L+VI+
Sbjct: 432 LKLRQST--GLMEYCLEVIK 449
>sp|Q1MIE8|RPOC_RHIL3 DNA-directed RNA polymerase subunit beta' OS=Rhizobium
leguminosarum bv. viciae (strain 3841) GN=rpoC PE=3 SV=1
Length = 1402
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 20/143 (13%)
Query: 85 RIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLAREDFGE- 143
RI L T +R L +I G + +E + L E E+ +LA +++GE
Sbjct: 124 RISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSE-------EEYMLAVDEYGED 176
Query: 144 -CIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQI---FFDM 199
M+ ++ I++ LA +KI + EL + + + RL+I F +
Sbjct: 177 QFTAMIGAE----AIYEMLASMNLEKIAGDLRAELADTTSDLKQKKLMKRLKIVENFMES 232
Query: 200 YNH----LLQVIRLIPPDFNPLL 218
N +++V+ +IPPD PL+
Sbjct: 233 GNRPEWMIMKVVPVIPPDLRPLV 255
>sp|Q6G3X4|RPOC_BARHE DNA-directed RNA polymerase subunit beta' OS=Bartonella henselae
(strain ATCC 49882 / Houston 1) GN=rpoC PE=3 SV=1
Length = 1402
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 132 EDGLLAREDFGE--CIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSF 189
E+ +LA ++FGE M+ ++ I++ LA +KI + EL E ++ +
Sbjct: 164 EEYMLAIDEFGEDQFTAMIGAE----AIYELLASMELEKIANDLRAELSETTSELKQKKL 219
Query: 190 DARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
RL+I F + N +++ I +IPPD PL+
Sbjct: 220 IKRLKIVENFLESGNRPEWMIMKTIPVIPPDLRPLV 255
>sp|A1USC9|RPOC_BARBK DNA-directed RNA polymerase subunit beta' OS=Bartonella
bacilliformis (strain ATCC 35685 / KC583) GN=rpoC PE=3
SV=1
Length = 1403
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL LL+ E++ I +F A I+D LA KI E
Sbjct: 147 VTEPGLTSLKLHQLLSEEEYMLAIDKFGEDQFTAMIGAEAIYDLLAGMELDKIANDLHAE 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E ++ + RL+I F + N +++ I +IPPD PL+
Sbjct: 207 LAETTSELKQKKLIKRLKIVENFLESGNKPEWMIMKTIPVIPPDLRPLV 255
>sp|Q98N65|RPOC_RHILO DNA-directed RNA polymerase subunit beta' OS=Rhizobium loti (strain
MAFF303099) GN=rpoC PE=3 SV=1
Length = 1398
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 85 RIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLAREDFGEC 144
RI L T +R L +I G + +E + L E E+ ++A +++GE
Sbjct: 124 RIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLSE-------EEYMIAVDEYGE- 175
Query: 145 IGMVDSKEFAVG---IFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQI---FFD 198
DS +G I D LA +KI + EL ++ + + RL++ F +
Sbjct: 176 ----DSFTAMIGAEAIHDLLAGMDLEKIAGDLRSELASTTSELKQKKYLKRLKVVENFME 231
Query: 199 MYNH----LLQVIRLIPPDFNPLL 218
N +++V+ +IPPD PL+
Sbjct: 232 SGNRPEWMIMKVVPVIPPDLRPLV 255
>sp|A5VR14|RPOC_BRUO2 DNA-directed RNA polymerase subunit beta' OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E LL+ E++ + +F A I++ LA +KI + +
Sbjct: 147 VTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELLASMELEKIAADLRVD 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + RL+I F + N +++++ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKLMKRLKIVENFLESGNRPEWMIMKIVPVIPPDLRPLV 255
>sp|Q8YHP7|RPOC_BRUME DNA-directed RNA polymerase subunit beta' OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=rpoC
PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E LL+ E++ + +F A I++ LA +KI + +
Sbjct: 147 VTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELLASMELEKIAADLRVD 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + RL+I F + N +++++ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKLMKRLKIVENFLESGNRPEWMIMKIVPVIPPDLRPLV 255
>sp|Q57CP9|RPOC_BRUAB DNA-directed RNA polymerase subunit beta' OS=Brucella abortus
biovar 1 (strain 9-941) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E LL+ E++ + +F A I++ LA +KI + +
Sbjct: 147 VTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELLASMELEKIAADLRVD 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + RL+I F + N +++++ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKLMKRLKIVENFLESGNRPEWMIMKIVPVIPPDLRPLV 255
>sp|Q2YM16|RPOC_BRUA2 DNA-directed RNA polymerase subunit beta' OS=Brucella abortus
(strain 2308) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E LL+ E++ + +F A I++ LA +KI + +
Sbjct: 147 VTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELLASMELEKIAADLRVD 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + RL+I F + N +++++ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKLMKRLKIVENFLESGNRPEWMIMKIVPVIPPDLRPLV 255
>sp|B2S686|RPOC_BRUA1 DNA-directed RNA polymerase subunit beta' OS=Brucella abortus
(strain S19) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E LL+ E++ + +F A I++ LA +KI + +
Sbjct: 147 VTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELLASMELEKIAADLRVD 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + RL+I F + N +++++ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKLMKRLKIVENFLESGNRPEWMIMKIVPVIPPDLRPLV 255
>sp|A6X0B0|RPOC_OCHA4 DNA-directed RNA polymerase subunit beta' OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rpoC PE=3
SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E LL+ E++ + +F A I++ LA +KI + +
Sbjct: 147 VTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELLASMELEKIAADLRVD 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + RL+I F + N +++++ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKLMKRLKIVENFLESGNRPEWMIMKIVPVIPPDLRPLV 255
>sp|B0CH40|RPOC_BRUSI DNA-directed RNA polymerase subunit beta' OS=Brucella suis (strain
ATCC 23445 / NCTC 10510) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E LL+ E++ + +F A I++ LA +KI + +
Sbjct: 147 VTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELLASMELEKIAADLRVD 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + RL+I F + N +++++ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKLMKRLKIVENFLESGNRPEWMIMKIVPVIPPDLRPLV 255
>sp|A9M5Q8|RPOC_BRUC2 DNA-directed RNA polymerase subunit beta' OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E LL+ E++ + +F A I++ LA +KI + +
Sbjct: 147 VTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELLASMELEKIAADLRVD 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + RL+I F + N +++++ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKLMKRLKIVENFLESGNRPEWMIMKIVPVIPPDLRPLV 255
>sp|Q8G070|RPOC_BRUSU DNA-directed RNA polymerase subunit beta' OS=Brucella suis biovar 1
(strain 1330) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E LL+ E++ + +F A I++ LA +KI + +
Sbjct: 147 VTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELLASMELEKIAADLRVD 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + RL+I F + N +++++ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKLMKRLKIVENFLESGNRPEWMIMKIVPVIPPDLRPLV 255
>sp|C0RJK9|RPOC_BRUMB DNA-directed RNA polymerase subunit beta' OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEF-----AVGIFDALARRRGQKIGKITKEE 176
+ E SL E LL+ E++ + +F A I++ LA +KI + +
Sbjct: 147 VTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELLASMELEKIAADLRVD 206
Query: 177 LGEFWLQISDQSFDARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
L E + + RL+I F + N +++++ +IPPD PL+
Sbjct: 207 LAETTSDLKQKKLMKRLKIVENFLESGNRPEWMIMKIVPVIPPDLRPLV 255
>sp|Q9JH69|NS1AB_TASV1 Non-structural polyprotein 1AB OS=Turkey astrovirus 1 GN=ORF1 PE=3
SV=3
Length = 1611
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 83 ERRIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLARE 139
E++ K K +RT G K AL G +++SKA +R L E + + EDG E
Sbjct: 794 EQKKKGKTKRTARGGKHAL-GKKYLSKA----HFSRMRMLTEEEYNKMVEDGFSPDE 845
>sp|A6LJ30|CH60_THEM4 60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM
12029) GN=groL PE=3 SV=1
Length = 539
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/84 (19%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 57 VFRQKFGWLRSGSSPDIEERTMSGRDERRIKAKLQRTRSGAKRALNGLRFISKAAGASDA 116
+ ++ + +G++P + +R + ++ + A +++ + +K+ N A+ ++++
Sbjct: 98 MIKEGIKNVTAGANPILVKRGI----DKAVAAAVEKIKDISKKLSNSDDIAHVASISANS 153
Query: 117 EELRRLVESTFESLSEDGLLARED 140
EE+ +L+ E + EDG++ ED
Sbjct: 154 EEIGKLIAEAMEKVGEDGVITVED 177
>sp|P07782|PQQE_ACICA Coenzyme PQQ synthesis protein E OS=Acinetobacter calcoaceticus
GN=pqqE PE=3 SV=1
Length = 384
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 26 PIFLNDLSRNSQQEQAQDLVELTIELEDDAV--VFRQKFGWL---RSGSSPDIEERTMSG 80
P+ LN + +Q + ++EL +EL D V Q +GW R G P E+ T +
Sbjct: 149 PMVLNFVIHRHNIDQIEQIIELCLELNADTVELAICQFYGWAFLNRQGLLPTQEQLTRAE 208
Query: 81 RDERRIKAKLQRTRSGAK 98
R + KL+ K
Sbjct: 209 RITNEYREKLKAQNHPCK 226
>sp|Q9JH70|NS1A_TASV1 Non-structural polyprotein 1A OS=Turkey astrovirus 1 GN=ORF1 PE=3
SV=1
Length = 1099
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 83 ERRIKAKLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLARE 139
E++ K K +RT G K AL G +++SKA +R L E + + EDG E
Sbjct: 794 EQKKKGKTKRTARGGKHAL-GKKYLSKA----HFSRMRMLTEEEYNKMVEDGFSPDE 845
>sp|A9ISG4|RPOC_BART1 DNA-directed RNA polymerase subunit beta' OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=rpoC PE=3 SV=1
Length = 1403
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 132 EDGLLAREDFGE--CIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSF 189
E+ +LA ++FGE M+ ++ I++ LA KI + EL E ++ +
Sbjct: 164 EEYMLAIDEFGEDQFTAMIGAE----AIYELLAGMELDKIANDLRLELAETTSELKQKKL 219
Query: 190 DARLQI---FFDMYNH----LLQVIRLIPPDFNPLL 218
RL+I F + N +++ I +IPPD PL+
Sbjct: 220 IKRLKIVENFLESGNKPEWMIMKTIPVIPPDLRPLV 255
>sp|P14105|MYH9_CHICK Myosin-9 OS=Gallus gallus GN=MYH9 PE=2 SV=1
Length = 1959
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 7 SSSRSNYSRTDYGVGRAMLPIFLNDL--SRNSQQE----QAQDLVELTIELEDDAVVFRQ 60
S +++ + D G L L D S +QQE + Q++ L LED+A
Sbjct: 1126 SRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTVLKKTLEDEAKTHEA 1185
Query: 61 KFGWLRSGSSPDIEERTMSGRDERRIKAKLQRTRSG--AKRA--LNGLRFISKAAGASDA 116
+ +R S IEE +R+KA L++ + ++RA N ++ + + G DA
Sbjct: 1186 QIQEMRQKHSQAIEELAEQLEQTKRVKANLEKAKQALESERAELSNEVKVLLQGKG--DA 1243
Query: 117 EELRRLVESTFESL 130
E R+ V++ + L
Sbjct: 1244 EHKRKKVDAQLQEL 1257
>sp|Q6AP77|RPOC_DESPS DNA-directed RNA polymerase subunit beta' OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=rpoC PE=3
SV=1
Length = 1349
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 122 LVESTFESLSEDGLLAREDFGECIGMVDSKEFAVGIF-----DALARRRGQKIGKITKEE 176
+ +S E L LL E + + + + +F VGI + LA + + ++ +EE
Sbjct: 146 VTQSEVEELPLGTLLTEEKYRQALSEYPA-QFKVGIGAEAIRELLAAQDLIGLSRVLREE 204
Query: 177 LGEFWLQISDQSFDARL---QIFFDMYNH----LLQVIRLIPPDFNPLLSRE 221
+ Q Q RL + F D N +LQVI ++PPD PL+ E
Sbjct: 205 MASTSSQTKRQKLGKRLFVIEAFRDSGNKPEWMILQVIPVLPPDLRPLVPLE 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,326,307
Number of Sequences: 539616
Number of extensions: 3099446
Number of successful extensions: 10052
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 9995
Number of HSP's gapped (non-prelim): 76
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)