Query 040483
Match_columns 231
No_of_seqs 98 out of 111
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 08:54:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08414 NADPH_Ox: Respiratory 100.0 7.3E-57 1.6E-61 354.4 4.5 100 89-191 1-100 (100)
2 PTZ00183 centrin; Provisional 96.5 0.014 2.9E-07 44.7 7.4 84 121-207 17-106 (158)
3 PTZ00184 calmodulin; Provision 96.2 0.044 9.5E-07 41.0 8.2 87 118-207 8-100 (149)
4 COG5126 FRQ1 Ca2+-binding prot 91.8 0.77 1.7E-05 39.3 7.2 83 121-207 20-108 (160)
5 PF13499 EF-hand_7: EF-hand do 90.0 0.18 3.9E-06 34.2 1.5 38 170-207 15-56 (66)
6 PF13405 EF-hand_6: EF-hand do 87.8 0.41 8.9E-06 29.2 1.8 16 192-207 1-16 (31)
7 PF13833 EF-hand_8: EF-hand do 85.8 1.2 2.6E-05 29.4 3.4 39 170-208 3-42 (54)
8 PF13202 EF-hand_5: EF hand; P 79.5 1.5 3.2E-05 26.5 1.7 16 193-208 1-16 (25)
9 KOG0034 Ca2+/calmodulin-depend 78.9 5.5 0.00012 34.6 5.7 86 119-207 31-120 (187)
10 cd05023 S-100A11 S-100A11: S-1 75.6 8.1 0.00018 29.3 5.2 51 156-207 13-68 (89)
11 cd00252 SPARC_EC SPARC_EC; ext 75.4 4.4 9.5E-05 32.5 3.9 47 154-207 50-96 (116)
12 PLN02964 phosphatidylserine de 74.5 10 0.00022 38.8 7.1 79 122-207 144-231 (644)
13 cd05029 S-100A6 S-100A6: S-100 74.3 9 0.0002 28.9 5.1 25 156-181 14-38 (88)
14 cd00051 EFh EF-hand, calcium b 73.8 9.3 0.0002 23.4 4.4 36 171-206 16-51 (63)
15 cd05030 calgranulins Calgranul 71.7 12 0.00025 27.9 5.2 53 154-207 10-67 (88)
16 PF13499 EF-hand_7: EF-hand do 70.5 3.2 6.9E-05 28.1 1.8 16 192-207 1-16 (66)
17 PTZ00183 centrin; Provisional 70.0 14 0.00031 28.1 5.4 50 155-207 20-69 (158)
18 cd05026 S-100Z S-100Z: S-100Z 69.1 17 0.00036 27.4 5.6 51 155-206 13-68 (93)
19 KOG3866 DNA-binding protein of 68.8 2.7 5.9E-05 40.8 1.5 56 149-207 199-260 (442)
20 cd05022 S-100A13 S-100A13: S-1 68.6 9.3 0.0002 29.2 4.1 49 154-207 10-63 (89)
21 cd00052 EH Eps15 homology doma 65.7 20 0.00042 23.7 4.8 47 133-184 13-62 (67)
22 cd00052 EH Eps15 homology doma 64.7 20 0.00043 23.7 4.7 47 156-207 3-49 (67)
23 PTZ00184 calmodulin; Provision 64.0 14 0.0003 27.5 4.3 49 156-207 15-63 (149)
24 PF00036 EF-hand_1: EF hand; 63.9 5.2 0.00011 24.9 1.6 16 193-208 2-17 (29)
25 cd05027 S-100B S-100B: S-100B 59.9 25 0.00055 26.5 5.1 14 193-206 53-66 (88)
26 PF13833 EF-hand_8: EF-hand do 53.3 14 0.00031 24.2 2.5 49 132-183 1-53 (54)
27 cd05031 S-100A10_like S-100A10 50.2 48 0.001 24.5 5.1 37 170-206 25-66 (94)
28 cd05025 S-100A1 S-100A1: S-100 45.8 67 0.0014 23.6 5.3 14 193-206 54-67 (92)
29 cd04890 ACT_AK-like_1 ACT doma 43.9 17 0.00036 24.5 1.7 27 146-173 9-35 (62)
30 KOG0027 Calmodulin and related 42.8 70 0.0015 25.4 5.3 87 118-208 44-138 (151)
31 smart00862 Trans_reg_C Transcr 40.7 66 0.0014 22.0 4.3 58 150-212 8-73 (78)
32 smart00027 EH Eps15 homology d 40.2 1.2E+02 0.0025 22.5 5.8 62 119-185 8-74 (96)
33 cd04933 ACT_AK1-AT_1 ACT domai 39.0 23 0.00049 26.6 1.9 29 144-173 8-36 (78)
34 KOG4251 Calcium binding protei 36.4 54 0.0012 31.4 4.3 40 170-209 116-158 (362)
35 KOG4223 Reticulocalbin, calume 34.7 80 0.0017 30.4 5.2 74 118-209 58-131 (325)
36 smart00054 EFh EF-hand, calciu 31.4 37 0.00081 17.6 1.5 15 193-207 2-16 (29)
37 cd04935 ACT_AKiii-DAPDC_1 ACT 31.3 35 0.00076 24.9 1.8 27 146-173 10-36 (75)
38 cd04922 ACT_AKi-HSDH-ThrA_2 AC 29.1 46 0.001 22.0 2.0 25 144-169 8-32 (66)
39 cd04932 ACT_AKiii-LysC-EC_1 AC 26.7 48 0.001 24.3 1.8 28 145-173 9-36 (75)
40 PF04675 DNA_ligase_A_N: DNA l 26.6 1E+02 0.0022 25.0 3.9 52 150-201 87-144 (177)
41 cd04912 ACT_AKiii-LysC-EC-like 26.4 52 0.0011 23.5 2.0 27 145-172 9-35 (75)
42 KOG0044 Ca2+ sensor (EF-Hand s 25.1 1.6E+02 0.0035 26.0 5.1 59 146-207 58-116 (193)
43 PF10591 SPARC_Ca_bdg: Secrete 24.9 43 0.00094 26.5 1.4 15 193-207 90-104 (113)
44 cd04937 ACT_AKi-DapG-BS_2 ACT 24.8 54 0.0012 22.5 1.7 23 146-169 10-32 (64)
45 cd05029 S-100A6 S-100A6: S-100 24.8 1.7E+02 0.0037 22.0 4.6 52 122-177 11-73 (88)
46 PF09793 AD: Anticodon-binding 24.4 66 0.0014 24.6 2.3 18 146-164 29-46 (91)
47 PLN02964 phosphatidylserine de 24.3 67 0.0015 33.1 3.0 14 193-206 181-194 (644)
48 KOG0027 Calmodulin and related 23.9 3.7E+02 0.008 21.3 6.8 14 132-145 21-34 (151)
49 cd04916 ACT_AKiii-YclM-BS_2 AC 23.7 66 0.0014 21.2 2.0 25 144-169 8-32 (66)
50 cd04936 ACT_AKii-LysC-BS-like_ 23.6 64 0.0014 20.8 1.8 27 146-173 9-35 (63)
51 PF04081 DNA_pol_delta_4: DNA 22.1 34 0.00074 28.7 0.4 11 139-149 75-85 (124)
52 cd05031 S-100A10_like S-100A10 21.6 2.6E+02 0.0056 20.6 4.9 57 125-185 12-81 (94)
53 COG1023 Gnd Predicted 6-phosph 21.2 1.2E+02 0.0026 28.9 3.8 85 97-183 106-211 (300)
54 cd04923 ACT_AK-LysC-DapG-like_ 21.0 77 0.0017 20.5 1.8 27 146-173 9-35 (63)
55 PF12373 Msg2_C: Major surface 20.8 67 0.0014 21.3 1.4 17 164-180 6-22 (30)
56 PF14500 MMS19_N: Dos2-interac 20.7 88 0.0019 28.2 2.7 30 150-179 157-193 (262)
57 COG1977 MoaD Molybdopterin con 20.5 54 0.0012 24.6 1.1 11 202-212 70-80 (84)
58 cd04919 ACT_AK-Hom3_2 ACT doma 20.5 78 0.0017 21.1 1.8 23 146-169 10-32 (66)
No 1
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=100.00 E-value=7.3e-57 Score=354.39 Aligned_cols=100 Identities=66% Similarity=1.019 Sum_probs=79.4
Q ss_pred hhhhccchHHHHhccccccccccCCcchHHHHHHHHHHHHhhhccCCccccccccccCCCCcHHHHHHHHHHHhhhcCCC
Q 040483 89 KLQRTRSGAKRALNGLRFISKAAGASDAEELRRLVESTFESLSEDGLLAREDFGECIGMVDSKEFAVGIFDALARRRGQK 168 (231)
Q Consensus 89 ~ldRskS~A~~ALkGLrFIskt~g~~~~~~gW~~VEkRFd~La~dG~L~Rs~FgeCIGM~dSkEFA~ELFDALaRRR~i~ 168 (231)
+|+||+|+|++||||||||++++++. ++|++||+||++|++||+|||++||+||||+||||||+||||||||||+|+
T Consensus 1 rldRt~S~A~~ALkGLrFIskt~~~~---~~W~~VE~RFd~La~dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~ 77 (100)
T PF08414_consen 1 RLDRTKSGAQRALKGLRFISKTTGGA---DGWKEVEKRFDKLAKDGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIK 77 (100)
T ss_dssp -----HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH-BTTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--
T ss_pred CCCcchhHHHHHHhcccceecCCCCc---cCHHHHHHHHHHhCcCCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCc
Confidence 58999999999999999999998874 589999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhCCChhH
Q 040483 169 IGKITKEELGEFWLQISDQSFDA 191 (231)
Q Consensus 169 ~~~ItK~EL~eFW~qIsDqsFDS 191 (231)
.++|||+||+|||+|||||||||
T Consensus 78 ~~~I~k~eL~efW~qisD~sFDs 100 (100)
T PF08414_consen 78 GDSITKDELKEFWEQISDQSFDS 100 (100)
T ss_dssp SSEE-HHHHHHHHHHHH---HHH
T ss_pred cCCcCHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999997
No 2
>PTZ00183 centrin; Provisional
Probab=96.55 E-value=0.014 Score=44.66 Aligned_cols=84 Identities=13% Similarity=0.228 Sum_probs=65.6
Q ss_pred HHHHHHHHhhh--ccCCcccccccccc---CCCCcHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHh-hCCChhHHHH
Q 040483 121 RLVESTFESLS--EDGLLAREDFGECI---GMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQI-SDQSFDARLQ 194 (231)
Q Consensus 121 ~~VEkRFd~La--~dG~L~Rs~FgeCI---GM~dSkEFA~ELFDALaRRR~i~~~~ItK~EL~eFW~qI-sDqsFDSRLQ 194 (231)
.++++-|..+- .+|.+....|..|+ |+.-+.+-+..+|..+.. -..+.|+.+|+...+... ........++
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~---~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDK---DGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC---CCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 56778888776 58999999998887 565566667777776642 124669999999998875 4556778899
Q ss_pred HHHHhhcCCCCce
Q 040483 195 IFFDMYNHLLQVI 207 (231)
Q Consensus 195 iFFDMvDKn~D~~ 207 (231)
.-|.++|+|.+|.
T Consensus 94 ~~F~~~D~~~~G~ 106 (158)
T PTZ00183 94 KAFRLFDDDKTGK 106 (158)
T ss_pred HHHHHhCCCCCCc
Confidence 9999999999986
No 3
>PTZ00184 calmodulin; Provisional
Probab=96.17 E-value=0.044 Score=41.05 Aligned_cols=87 Identities=13% Similarity=0.207 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhh--ccCCcccccccccc---CCCCcHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHh-hCCChhH
Q 040483 118 ELRRLVESTFESLS--EDGLLAREDFGECI---GMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQI-SDQSFDA 191 (231)
Q Consensus 118 ~gW~~VEkRFd~La--~dG~L~Rs~FgeCI---GM~dSkEFA~ELFDALaRRR~i~~~~ItK~EL~eFW~qI-sDqsFDS 191 (231)
..++..++.|..+- .+|.|..+.|..++ |..-+.+-...+|..+..- ..+.|+.+|+..+|... ..+....
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~l~~~~~~~~~~~ 84 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD---GNGTIDFPEFLTLMARKMKDTDSEE 84 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcC---CCCcCcHHHHHHHHHHhccCCcHHH
Confidence 46888999999874 69999999999876 6555566667777665531 13579999999999865 4567778
Q ss_pred HHHHHHHhhcCCCCce
Q 040483 192 RLQIFFDMYNHLLQVI 207 (231)
Q Consensus 192 RLQiFFDMvDKn~D~~ 207 (231)
+++.-|.++|+|.+|.
T Consensus 85 ~~~~~F~~~D~~~~g~ 100 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGF 100 (149)
T ss_pred HHHHHHHhhCCCCCCe
Confidence 9999999999999985
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=91.82 E-value=0.77 Score=39.30 Aligned_cols=83 Identities=14% Similarity=0.244 Sum_probs=61.2
Q ss_pred HHHHHHHHhhh--ccCCcccccccccc---CCCCcHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHhh-CCChhHHHH
Q 040483 121 RLVESTFESLS--EDGLLAREDFGECI---GMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQIS-DQSFDARLQ 194 (231)
Q Consensus 121 ~~VEkRFd~La--~dG~L~Rs~FgeCI---GM~dSkEFA~ELFDALaRRR~i~~~~ItK~EL~eFW~qIs-DqsFDSRLQ 194 (231)
.+.-++|..+- .+|.++|++|+.-. |-+-++.++.+||..+-- ..+.|+-.|+-.+-.-.. -.+=.-.|+
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~----~~~~idf~~Fl~~ms~~~~~~~~~Eel~ 95 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA----GNETVDFPEFLTVMSVKLKRGDKEEELR 95 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC----CCCccCHHHHHHHHHHHhccCCcHHHHH
Confidence 33446777666 49999999999874 999999999999998764 346677777666665555 333455677
Q ss_pred HHHHhhcCCCCce
Q 040483 195 IFFDMYNHLLQVI 207 (231)
Q Consensus 195 iFFDMvDKn~D~~ 207 (231)
-=|...|||.||.
T Consensus 96 ~aF~~fD~d~dG~ 108 (160)
T COG5126 96 EAFKLFDKDHDGY 108 (160)
T ss_pred HHHHHhCCCCCce
Confidence 7788888888875
No 5
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=90.05 E-value=0.18 Score=34.23 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHhh----CCChhHHHHHHHHhhcCCCCce
Q 040483 170 GKITKEELGEFWLQIS----DQSFDARLQIFFDMYNHLLQVI 207 (231)
Q Consensus 170 ~~ItK~EL~eFW~qIs----DqsFDSRLQiFFDMvDKn~D~~ 207 (231)
+.|+++||..+...+- ++.-+.-++..|.++|+|.||.
T Consensus 15 G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~ 56 (66)
T PF13499_consen 15 GYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGR 56 (66)
T ss_dssp SEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSS
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCC
Confidence 5688888888888777 4556667777899999999984
No 6
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=87.79 E-value=0.41 Score=29.23 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.8
Q ss_pred HHHHHHHhhcCCCCce
Q 040483 192 RLQIFFDMYNHLLQVI 207 (231)
Q Consensus 192 RLQiFFDMvDKn~D~~ 207 (231)
||+-+|.++|+|.||.
T Consensus 1 ~l~~~F~~~D~d~dG~ 16 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGF 16 (31)
T ss_dssp HHHHHHHHH-TTSSSE
T ss_pred CHHHHHHHHCCCCCCc
Confidence 7899999999999995
No 7
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=85.81 E-value=1.2 Score=29.40 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHhhCC-ChhHHHHHHHHhhcCCCCcee
Q 040483 170 GKITKEELGEFWLQISDQ-SFDARLQIFFDMYNHLLQVIR 208 (231)
Q Consensus 170 ~~ItK~EL~eFW~qIsDq-sFDSRLQiFFDMvDKn~D~~~ 208 (231)
+.||++||+.++..+--+ -=+.=++..|..+|.|.||..
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I 42 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYI 42 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSE
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCC
Confidence 457777777777443222 223337777888888877753
No 8
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=79.50 E-value=1.5 Score=26.47 Aligned_cols=16 Identities=13% Similarity=-0.039 Sum_probs=14.1
Q ss_pred HHHHHHhhcCCCCcee
Q 040483 193 LQIFFDMYNHLLQVIR 208 (231)
Q Consensus 193 LQiFFDMvDKn~D~~~ 208 (231)
|+.+|..+|+|.||..
T Consensus 1 l~~~F~~~D~d~DG~i 16 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKI 16 (25)
T ss_dssp HHHHHHHHTTTSSSEE
T ss_pred CHHHHHHHcCCCCCcC
Confidence 6789999999999964
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=78.89 E-value=5.5 Score=34.60 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhh---ccCCccccccccccCCCCcHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHhhCCChhH-HHH
Q 040483 119 LRRLVESTFESLS---EDGLLAREDFGECIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDA-RLQ 194 (231)
Q Consensus 119 gW~~VEkRFd~La---~dG~L~Rs~FgeCIGM~dSkEFA~ELFDALaRRR~i~~~~ItK~EL~eFW~qIsDqsFDS-RLQ 194 (231)
.=...-.||.+|. .+|+|+++.|=.=. .....=|+..++|.---.++-.. |+.+|.-..-...+....-- ||+
T Consensus 31 EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~--v~F~~Fv~~ls~f~~~~~~~~Kl~ 107 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDP--VDFEEFVRLLSVFSPKASKREKLR 107 (187)
T ss_pred HHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCc--cCHHHHHHHHhhhcCCccHHHHHH
Confidence 4577889999998 46899999996655 44577789999888766554333 99999999999999888887 999
Q ss_pred HHHHhhcCCCCce
Q 040483 195 IFFDMYNHLLQVI 207 (231)
Q Consensus 195 iFFDMvDKn~D~~ 207 (231)
-=|.|.|+|.||.
T Consensus 108 faF~vYD~~~~G~ 120 (187)
T KOG0034|consen 108 FAFRVYDLDGDGF 120 (187)
T ss_pred HHHHHhcCCCCCc
Confidence 9999999999994
No 10
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=75.65 E-value=8.1 Score=29.28 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred HHHHHHhhhcCCCCCCCCHHHHHHHHHHh-----hCCChhHHHHHHHHhhcCCCCce
Q 040483 156 GIFDALARRRGQKIGKITKEELGEFWLQI-----SDQSFDARLQIFFDMYNHLLQVI 207 (231)
Q Consensus 156 ELFDALaRRR~i~~~~ItK~EL~eFW~qI-----sDqsFDSRLQiFFDMvDKn~D~~ 207 (231)
.+|...+.+-| ....||++||+.|-..- +.+.=+.=+.-.|.-+|+|.||-
T Consensus 13 ~~F~~y~~~dg-~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~ 68 (89)
T cd05023 13 AVFQKYAGKDG-DSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQ 68 (89)
T ss_pred HHHHHHhccCC-CcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCc
Confidence 45555554433 34479999999888765 33443455666788889999874
No 11
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=75.38 E-value=4.4 Score=32.52 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhcCCCCCCCCHHHHHHHHHHhhCCChhHHHHHHHHhhcCCCCce
Q 040483 154 AVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDMYNHLLQVI 207 (231)
Q Consensus 154 A~ELFDALaRRR~i~~~~ItK~EL~eFW~qIsDqsFDSRLQiFFDMvDKn~D~~ 207 (231)
+...|..|=.- .-+.|+++||+.+- .. ....-...||..||.|.||.
T Consensus 50 l~w~F~~lD~d---~DG~Ls~~EL~~~~-l~---~~e~~~~~f~~~~D~n~Dg~ 96 (116)
T cd00252 50 VGWMFNQLDGN---YDGKLSHHELAPIR-LD---PNEHCIKPFFESCDLDKDGS 96 (116)
T ss_pred HHHHHHHHCCC---CCCcCCHHHHHHHH-cc---chHHHHHHHHHHHCCCCCCC
Confidence 55556655221 23568888888765 11 12455677999999999985
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=74.54 E-value=10 Score=38.84 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=55.7
Q ss_pred HHHHHHHhhh--ccCCcccccccccc---C-CC-CcH--HHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHhhCCChhHH
Q 040483 122 LVESTFESLS--EDGLLAREDFGECI---G-MV-DSK--EFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDAR 192 (231)
Q Consensus 122 ~VEkRFd~La--~dG~L~Rs~FgeCI---G-M~-dSk--EFA~ELFDALaRRR~i~~~~ItK~EL~eFW~qIsDqsFDSR 192 (231)
++.+-|+.+- .+|.+ +|.|. | +. ... .|+.++|..+-.- ....|+.+|+..+=..+....-+.-
T Consensus 144 elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D---gdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 144 SACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYD---EDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC---CCCeEcHHHHHHHHHHhccCCCHHH
Confidence 3444588776 46776 44443 6 23 233 3899999876321 1367999999988888776566777
Q ss_pred HHHHHHhhcCCCCce
Q 040483 193 LQIFFDMYNHLLQVI 207 (231)
Q Consensus 193 LQiFFDMvDKn~D~~ 207 (231)
|+-+|+++|+|.||-
T Consensus 217 L~eaFk~fDkDgdG~ 231 (644)
T PLN02964 217 KEELFKAADLNGDGV 231 (644)
T ss_pred HHHHHHHhCCCCCCc
Confidence 999999999999984
No 13
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=74.25 E-value=9 Score=28.90 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=12.3
Q ss_pred HHHHHHhhhcCCCCCCCCHHHHHHHH
Q 040483 156 GIFDALARRRGQKIGKITKEELGEFW 181 (231)
Q Consensus 156 ELFDALaRRR~i~~~~ItK~EL~eFW 181 (231)
++|+.-+++-| ..+.|+++||++..
T Consensus 14 ~~F~~y~~~~~-~~g~Is~~EL~~~l 38 (88)
T cd05029 14 AIFHKYSGREG-DKNTLSKKELKELI 38 (88)
T ss_pred HHHHHHHccCC-CCCEECHHHHHHHH
Confidence 44555554444 33445555555555
No 14
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=73.83 E-value=9.3 Score=23.38 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHhhCCChhHHHHHHHHhhcCCCCc
Q 040483 171 KITKEELGEFWLQISDQSFDARLQIFFDMYNHLLQV 206 (231)
Q Consensus 171 ~ItK~EL~eFW~qIsDqsFDSRLQiFFDMvDKn~D~ 206 (231)
.|+.+|++....++-.+.-+.=++..|..+|+|.++
T Consensus 16 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (63)
T cd00051 16 TISADELKAALKSLGEGLSEEEIDEMIREVDKDGDG 51 (63)
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Confidence 344444444444443333333344445555555444
No 15
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=71.72 E-value=12 Score=27.92 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhcCCCCCCCCHHHHHHHHH-HhhCCCh----hHHHHHHHHhhcCCCCce
Q 040483 154 AVGIFDALARRRGQKIGKITKEELGEFWL-QISDQSF----DARLQIFFDMYNHLLQVI 207 (231)
Q Consensus 154 A~ELFDALaRRR~i~~~~ItK~EL~eFW~-qIsDqsF----DSRLQiFFDMvDKn~D~~ 207 (231)
..++|..=|.++| ....|+++||+..-. .+.+.-- +.-++..|.-+|.|.||.
T Consensus 10 ~~~~f~~y~~~~~-~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~ 67 (88)
T cd05030 10 IINVFHQYSVRKG-HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQ 67 (88)
T ss_pred HHHHHHHHhccCC-CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCc
Confidence 4678888888888 567899999999886 3332211 577888888889998874
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=70.51 E-value=3.2 Score=28.09 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=14.8
Q ss_pred HHHHHHHhhcCCCCce
Q 040483 192 RLQIFFDMYNHLLQVI 207 (231)
Q Consensus 192 RLQiFFDMvDKn~D~~ 207 (231)
||+..|+++|+|.||-
T Consensus 1 ~l~~~F~~~D~d~~G~ 16 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGY 16 (66)
T ss_dssp HHHHHHHHHSTTSSSE
T ss_pred CHHHHHHHHcCCccCC
Confidence 7899999999999985
No 17
>PTZ00183 centrin; Provisional
Probab=70.03 E-value=14 Score=28.08 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=38.2
Q ss_pred HHHHHHHhhhcCCCCCCCCHHHHHHHHHHhhCCChhHHHHHHHHhhcCCCCce
Q 040483 155 VGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDMYNHLLQVI 207 (231)
Q Consensus 155 ~ELFDALaRRR~i~~~~ItK~EL~eFW~qIsDqsFDSRLQiFFDMvDKn~D~~ 207 (231)
..+|..+-.- ..+.|+++||+.++.++.-+.-..-++..|..+|+|.||.
T Consensus 20 ~~~F~~~D~~---~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~ 69 (158)
T PTZ00183 20 REAFDLFDTD---GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGK 69 (158)
T ss_pred HHHHHHhCCC---CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Confidence 4556665432 2467999999999998865555667999999999999985
No 18
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=69.13 E-value=17 Score=27.39 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=34.1
Q ss_pred HHHHHHHhhhcCCCCCCCCHHHHHHHHHHh-----hCCChhHHHHHHHHhhcCCCCc
Q 040483 155 VGIFDALARRRGQKIGKITKEELGEFWLQI-----SDQSFDARLQIFFDMYNHLLQV 206 (231)
Q Consensus 155 ~ELFDALaRRR~i~~~~ItK~EL~eFW~qI-----sDqsFDSRLQiFFDMvDKn~D~ 206 (231)
.+.|..-+.+-| ++..|+++||++.-... +.+.-+.=+.-.+.-+|+|.||
T Consensus 13 ~~~F~~~dd~dg-dg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG 68 (93)
T cd05026 13 IRIFHNYSGKEG-DRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDN 68 (93)
T ss_pred HHHHHHHHccCC-CCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCC
Confidence 455666664433 22359999999987553 4444445577788888999998
No 19
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=68.84 E-value=2.7 Score=40.81 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHHhhhcC-CC-C-CCCCHHHHHHHHHHh---hCCChhHHHHHHHHhhcCCCCce
Q 040483 149 DSKEFAVGIFDALARRRG-QK-I-GKITKEELGEFWLQI---SDQSFDARLQIFFDMYNHLLQVI 207 (231)
Q Consensus 149 dSkEFA~ELFDALaRRR~-i~-~-~~ItK~EL~eFW~qI---sDqsFDSRLQiFFDMvDKn~D~~ 207 (231)
+-|| |.-=|.---+|.+ .. + ..=+|+||+|-|+.. --+.||- .|||-++|-|.||+
T Consensus 199 ~Rke-aesk~EE~~krH~~HpKvnhPGSkdQLkEVWEE~DgLdpn~fdP--KTFF~LHD~NsDGf 260 (442)
T KOG3866|consen 199 ERKE-AESKHEESLKRHNDHPKVNHPGSKDQLKEVWEESDGLDPNQFDP--KTFFALHDLNSDGF 260 (442)
T ss_pred HHHH-HHHHHHHHHHhhccCccCCCCCcHHHHHHHHHHhcCCCcccCCc--chheeeeccCCccc
Confidence 3444 4444444444444 32 2 557899999999974 3467886 69999999999997
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=68.59 E-value=9.3 Score=29.23 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhcCCCCCCCCHHHHHHHHHH-----hhCCChhHHHHHHHHhhcCCCCce
Q 040483 154 AVGIFDALARRRGQKIGKITKEELGEFWLQ-----ISDQSFDARLQIFFDMYNHLLQVI 207 (231)
Q Consensus 154 A~ELFDALaRRR~i~~~~ItK~EL~eFW~q-----IsDqsFDSRLQiFFDMvDKn~D~~ 207 (231)
-.+.|...+++ -..+.|+++||+..=.+ ++++ .-++-.|...|+|.||-
T Consensus 10 l~~~F~~fd~~--~~~g~i~~~ELk~ll~~elg~~ls~~---~~v~~mi~~~D~d~DG~ 63 (89)
T cd05022 10 LVSNFHKASVK--GGKESLTASEFQELLTQQLPHLLKDV---EGLEEKMKNLDVNQDSK 63 (89)
T ss_pred HHHHHHHHhCC--CCCCeECHHHHHHHHHHHhhhhccCH---HHHHHHHHHhCCCCCCC
Confidence 45778888886 22458999999885544 4443 55777888899999974
No 21
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=65.74 E-value=20 Score=23.72 Aligned_cols=47 Identities=28% Similarity=0.434 Sum_probs=23.4
Q ss_pred cCCcccccccccc---CCCCcHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHh
Q 040483 133 DGLLAREDFGECI---GMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQI 184 (231)
Q Consensus 133 dG~L~Rs~FgeCI---GM~dSkEFA~ELFDALaRRR~i~~~~ItK~EL~eFW~qI 184 (231)
+|.++.+.+..|+ |+ +++.+.++|..+-.- ..+.|+-+|....|..|
T Consensus 13 ~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~---~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 13 DGLISGDEARPFLGKSGL--PRSVLAQIWDLADTD---KDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCC---CCCcCCHHHHHHHHHHH
Confidence 4666666655554 33 555555555544221 12345555555555443
No 22
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=64.73 E-value=20 Score=23.69 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=32.6
Q ss_pred HHHHHHhhhcCCCCCCCCHHHHHHHHHHhhCCChhHHHHHHHHhhcCCCCce
Q 040483 156 GIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDMYNHLLQVI 207 (231)
Q Consensus 156 ELFDALaRRR~i~~~~ItK~EL~eFW~qIsDqsFDSRLQiFFDMvDKn~D~~ 207 (231)
++|..+-.. ..+.|+.+||+.+...+.- + +.-++.+|..+|+|.||.
T Consensus 3 ~~F~~~D~~---~~G~i~~~el~~~l~~~g~-~-~~~~~~i~~~~d~~~~g~ 49 (67)
T cd00052 3 QIFRSLDPD---GDGLISGDEARPFLGKSGL-P-RSVLAQIWDLADTDKDGK 49 (67)
T ss_pred HHHHHhCCC---CCCcCcHHHHHHHHHHcCC-C-HHHHHHHHHHhcCCCCCc
Confidence 345555322 1356899999998877754 2 345788889999998875
No 23
>PTZ00184 calmodulin; Provisional
Probab=63.96 E-value=14 Score=27.54 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHHHHhhhcCCCCCCCCHHHHHHHHHHhhCCChhHHHHHHHHhhcCCCCce
Q 040483 156 GIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDMYNHLLQVI 207 (231)
Q Consensus 156 ELFDALaRRR~i~~~~ItK~EL~eFW~qIsDqsFDSRLQiFFDMvDKn~D~~ 207 (231)
+.|..+-.. ..+.||.+||+.+..++...--+.-++..|..+|+|.||.
T Consensus 15 ~~F~~~D~~---~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~ 63 (149)
T PTZ00184 15 EAFSLFDKD---GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63 (149)
T ss_pred HHHHHHcCC---CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCc
Confidence 556555321 1457999999999887765444567899999999999974
No 24
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=63.87 E-value=5.2 Score=24.93 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=13.5
Q ss_pred HHHHHHhhcCCCCcee
Q 040483 193 LQIFFDMYNHLLQVIR 208 (231)
Q Consensus 193 LQiFFDMvDKn~D~~~ 208 (231)
++--|.+.|+|.||..
T Consensus 2 ~~~~F~~~D~d~dG~I 17 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKI 17 (29)
T ss_dssp HHHHHHHHSTTSSSEE
T ss_pred HHHHHHHHCCCCCCcC
Confidence 5678999999999963
No 25
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=59.94 E-value=25 Score=26.47 Aligned_cols=14 Identities=0% Similarity=-0.102 Sum_probs=7.3
Q ss_pred HHHHHHhhcCCCCc
Q 040483 193 LQIFFDMYNHLLQV 206 (231)
Q Consensus 193 LQiFFDMvDKn~D~ 206 (231)
++-++.-+|+|.||
T Consensus 53 v~~~i~~~D~n~dG 66 (88)
T cd05027 53 VDKVMETLDSDGDG 66 (88)
T ss_pred HHHHHHHhCCCCCC
Confidence 44444455566554
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=53.26 E-value=14 Score=24.19 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=35.7
Q ss_pred ccCCcccccccccc---CCC-CcHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHH
Q 040483 132 EDGLLAREDFGECI---GMV-DSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQ 183 (231)
Q Consensus 132 ~dG~L~Rs~FgeCI---GM~-dSkEFA~ELFDALaRRR~i~~~~ItK~EL~eFW~q 183 (231)
++|.+.++.|=.|+ |++ -|++=+..||..+=.-+ .+.|+.+|+..+|..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~---~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDG---DGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSS---SSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCC---CCCCCHHHHHHHHHh
Confidence 36888889998888 777 56655677776654322 367999999999864
No 27
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=50.17 E-value=48 Score=24.49 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHH-h----hCCChhHHHHHHHHhhcCCCCc
Q 040483 170 GKITKEELGEFWLQ-I----SDQSFDARLQIFFDMYNHLLQV 206 (231)
Q Consensus 170 ~~ItK~EL~eFW~q-I----sDqsFDSRLQiFFDMvDKn~D~ 206 (231)
+.|+++||+..+.. + .-+-=..-++..|.-+|.|.|+
T Consensus 25 G~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg 66 (94)
T cd05031 25 NTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDG 66 (94)
T ss_pred CeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCC
Confidence 35777777777664 2 1111124566666777777776
No 28
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=45.80 E-value=67 Score=23.57 Aligned_cols=14 Identities=0% Similarity=-0.128 Sum_probs=8.0
Q ss_pred HHHHHHhhcCCCCc
Q 040483 193 LQIFFDMYNHLLQV 206 (231)
Q Consensus 193 LQiFFDMvDKn~D~ 206 (231)
++-.|..+|+|.||
T Consensus 54 v~~i~~~~D~d~~G 67 (92)
T cd05025 54 VDKIMKELDENGDG 67 (92)
T ss_pred HHHHHHHHCCCCCC
Confidence 44555556666655
No 29
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=43.90 E-value=17 Score=24.46 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCCCCCCC
Q 040483 146 GMVDSKEFAVGIFDALARRRGQKIGKIT 173 (231)
Q Consensus 146 GM~dSkEFA~ELFDALaRRR~i~~~~It 173 (231)
||.+...|+.++|++|++- +|+.+-|+
T Consensus 9 ~m~~~~~~~~~if~~l~~~-~i~v~~i~ 35 (62)
T cd04890 9 LMNGEVGFLRKIFEILEKH-GISVDLIP 35 (62)
T ss_pred ccCcccCHHHHHHHHHHHc-CCeEEEEe
Confidence 7877788999999999974 45544443
No 30
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=42.85 E-value=70 Score=25.45 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhccCCccccccccccCCC---C-----cHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHhhCCCh
Q 040483 118 ELRRLVESTFESLSEDGLLAREDFGECIGMV---D-----SKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSF 189 (231)
Q Consensus 118 ~gW~~VEkRFd~La~dG~L~Rs~FgeCIGM~---d-----SkEFA~ELFDALaRRR~i~~~~ItK~EL~eFW~qIsDqsF 189 (231)
+.|..+-+.++ .--+|.+....|..|..-. . +.+=-.+.|..+-.- .-.-||.+||+.+=..+-.+.-
T Consensus 44 ~el~~~~~~~D-~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d---~~G~Is~~el~~~l~~lg~~~~ 119 (151)
T KOG0027|consen 44 EELRDLIKEID-LDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKD---GDGFISASELKKVLTSLGEKLT 119 (151)
T ss_pred HHHHHHHHHhC-CCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccC---CCCcCcHHHHHHHHHHhCCcCC
Confidence 34555555555 2257999999999998532 1 111234444444321 2356999999999999999988
Q ss_pred hHHHHHHHHhhcCCCCcee
Q 040483 190 DARLQIFFDMYNHLLQVIR 208 (231)
Q Consensus 190 DSRLQiFFDMvDKn~D~~~ 208 (231)
+.-++.-+--+|.|.||-.
T Consensus 120 ~~e~~~mi~~~d~d~dg~i 138 (151)
T KOG0027|consen 120 DEECKEMIREVDVDGDGKV 138 (151)
T ss_pred HHHHHHHHHhcCCCCCCeE
Confidence 8889999999999999865
No 31
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=40.68 E-value=66 Score=21.96 Aligned_cols=58 Identities=28% Similarity=0.489 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCCCHHHHHH-HHHH----hhCCChh---HHHHHHHHhhcCCCCceeecCC
Q 040483 150 SKEFAVGIFDALARRRGQKIGKITKEELGE-FWLQ----ISDQSFD---ARLQIFFDMYNHLLQVIRLIPP 212 (231)
Q Consensus 150 SkEFA~ELFDALaRRR~i~~~~ItK~EL~e-FW~q----IsDqsFD---SRLQiFFDMvDKn~D~~~~~~~ 212 (231)
.+|+. ||-.|+..++. .+++++|.+ .|.. .++.+.+ +||+-.+.-+..+.+.|..++.
T Consensus 8 ~~e~~--lL~~L~~~~~~---~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~~~~~~~~~i~~~~~ 73 (78)
T smart00862 8 PKEFR--LLELLLRNPGR---VVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLEDDGANPRLIETVRG 73 (78)
T ss_pred HHHHH--HHHHHHhCCCC---ccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHhcCCCCCCeEEEeCC
Confidence 56665 89999988654 799999988 5963 3334443 5788888655444567777664
No 32
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=40.16 E-value=1.2e+02 Score=22.46 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhh--ccCCcccccccccc---CCCCcHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHhh
Q 040483 119 LRRLVESTFESLS--EDGLLAREDFGECI---GMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQIS 185 (231)
Q Consensus 119 gW~~VEkRFd~La--~dG~L~Rs~FgeCI---GM~dSkEFA~ELFDALaRRR~i~~~~ItK~EL~eFW~qIs 185 (231)
........|+.+- .+|.|..+.+.+|+ |+ +++-..++|...-. -..+.|+.+|...+|..++
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~--~~~ev~~i~~~~d~---~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL--PQTLLAKIWNLADI---DNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC--CHHHHHHHHHHhcC---CCCCCcCHHHHHHHHHHHH
Confidence 4677888888775 57999999999886 54 45557777765421 1246688888888887764
No 33
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.97 E-value=23 Score=26.63 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=22.5
Q ss_pred ccCCCCcHHHHHHHHHHHhhhcCCCCCCCC
Q 040483 144 CIGMVDSKEFAVGIFDALARRRGQKIGKIT 173 (231)
Q Consensus 144 CIGM~dSkEFA~ELFDALaRRR~i~~~~It 173 (231)
+.||.+...|+.++|++||+. +|+.+-|+
T Consensus 8 ~~~~~~~~g~~a~IF~~La~~-~InVDmI~ 36 (78)
T cd04933 8 STRMLGQYGFLAKVFSIFETL-GISVDVVA 36 (78)
T ss_pred cCCCCCccCHHHHHHHHHHHc-CCcEEEEE
Confidence 347888899999999999974 56655553
No 34
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=36.39 E-value=54 Score=31.41 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHhhCCChhHHH---HHHHHhhcCCCCceee
Q 040483 170 GKITKEELGEFWLQISDQSFDARL---QIFFDMYNHLLQVIRL 209 (231)
Q Consensus 170 ~~ItK~EL~eFW~qIsDqsFDSRL---QiFFDMvDKn~D~~~~ 209 (231)
..||--|++..-..=+-.-|.--+ .|||+.||.|+||-..
T Consensus 116 rkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvs 158 (362)
T KOG4251|consen 116 RKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVS 158 (362)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCcee
Confidence 569999998766655555555433 6999999999999654
No 35
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.73 E-value=80 Score=30.38 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhccCCccccccccccCCCCcHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHhhCCChhHHHHHHH
Q 040483 118 ELRRLVESTFESLSEDGLLAREDFGECIGMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFF 197 (231)
Q Consensus 118 ~gW~~VEkRFd~La~dG~L~Rs~FgeCIGM~dSkEFA~ELFDALaRRR~i~~~~ItK~EL~eFW~qIsDqsFDSRLQiFF 197 (231)
-+|.+..+-|++|... +|++=-.-||..+= +-..+-||..||+..|.|.+-.--.-+-+-=|
T Consensus 58 ~~d~e~~~~fd~l~~e---------------e~~~rl~~l~~~iD---~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~ 119 (325)
T KOG4223|consen 58 LGDDEFADEFDQLTPE---------------ESQERLGKLVPKID---SDSDGFVTESELKAWIMQSQKKYVVEEAARRW 119 (325)
T ss_pred ccchhhhhhhhhhCcc---------------hhHHHHHHHHhhhc---CCCCCceeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999998632 25555555665554 33356799999999999999999999999999
Q ss_pred HhhcCCCCceee
Q 040483 198 DMYNHLLQVIRL 209 (231)
Q Consensus 198 DMvDKn~D~~~~ 209 (231)
+-.|+|.|++.-
T Consensus 120 ~~~d~~~Dg~i~ 131 (325)
T KOG4223|consen 120 DEYDKNKDGFIT 131 (325)
T ss_pred HHhccCccceee
Confidence 999999999874
No 36
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=31.39 E-value=37 Score=17.56 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=12.2
Q ss_pred HHHHHHhhcCCCCce
Q 040483 193 LQIFFDMYNHLLQVI 207 (231)
Q Consensus 193 LQiFFDMvDKn~D~~ 207 (231)
++..|+.+|.|.+++
T Consensus 2 ~~~~f~~~d~~~~g~ 16 (29)
T smart00054 2 LKEAFRLFDKDGDGK 16 (29)
T ss_pred HHHHHHHHCCCCCCc
Confidence 567789999998874
No 37
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.25 E-value=35 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=21.1
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCCCCCCC
Q 040483 146 GMVDSKEFAVGIFDALARRRGQKIGKIT 173 (231)
Q Consensus 146 GM~dSkEFA~ELFDALaRRR~i~~~~It 173 (231)
||.+...|+.++|.+|++. +|+.+-|+
T Consensus 10 ~~~~~~g~~~~IF~~La~~-~I~vDmI~ 36 (75)
T cd04935 10 GMWQQVGFLADVFAPFKKH-GVSVDLVS 36 (75)
T ss_pred CCCCccCHHHHHHHHHHHc-CCcEEEEE
Confidence 6777889999999999974 66655553
No 38
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=29.12 E-value=46 Score=21.98 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=19.1
Q ss_pred ccCCCCcHHHHHHHHHHHhhhcCCCC
Q 040483 144 CIGMVDSKEFAVGIFDALARRRGQKI 169 (231)
Q Consensus 144 CIGM~dSkEFA~ELFDALaRRR~i~~ 169 (231)
|-||.+...++..+|++|++ .+|+.
T Consensus 8 g~~~~~~~~~~~~i~~~l~~-~~I~v 32 (66)
T cd04922 8 GDGMAGTPGVAATFFSALAK-ANVNI 32 (66)
T ss_pred CCCCCCCccHHHHHHHHHHH-CCCCE
Confidence 44777788999999999965 45554
No 39
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.67 E-value=48 Score=24.27 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=22.6
Q ss_pred cCCCCcHHHHHHHHHHHhhhcCCCCCCCC
Q 040483 145 IGMVDSKEFAVGIFDALARRRGQKIGKIT 173 (231)
Q Consensus 145 IGM~dSkEFA~ELFDALaRRR~i~~~~It 173 (231)
-||.+...|+..+|++||+ .+|+.+-|+
T Consensus 9 ~~~~~~~g~~~~IF~~La~-~~I~VDmI~ 36 (75)
T cd04932 9 PNMLHAQGFLAKVFGILAK-HNISVDLIT 36 (75)
T ss_pred CCCCCCcCHHHHHHHHHHH-cCCcEEEEe
Confidence 4788889999999999996 467766664
No 40
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.
Probab=26.58 E-value=1e+02 Score=24.96 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHhhhcCCC--CCCCCHHHHHHHHHHhhCC----ChhHHHHHHHHhhc
Q 040483 150 SKEFAVGIFDALARRRGQK--IGKITKEELGEFWLQISDQ----SFDARLQIFFDMYN 201 (231)
Q Consensus 150 SkEFA~ELFDALaRRR~i~--~~~ItK~EL~eFW~qIsDq----sFDSRLQiFFDMvD 201 (231)
.-+||.-+...+.++.... ...+|-.|++++=++|+.. |=+.+.+++-++..
T Consensus 87 ~GD~g~~~~~~~~~~~~~~~~~~~lTi~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~ 144 (177)
T PF04675_consen 87 VGDLGEVAEEVLQKRKSETSKPSPLTISEVNETLDELAAASGKGSQDEKIDILKELLR 144 (177)
T ss_dssp HS-HHHHHHHHHHHHTTTS--SS--BHHHHHHHHHHHHH--STTHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 4457777788888888654 4889999999999999987 48888888877763
No 41
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=26.42 E-value=52 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=21.5
Q ss_pred cCCCCcHHHHHHHHHHHhhhcCCCCCCC
Q 040483 145 IGMVDSKEFAVGIFDALARRRGQKIGKI 172 (231)
Q Consensus 145 IGM~dSkEFA~ELFDALaRRR~i~~~~I 172 (231)
-||.+...|+..+|.+|++. +|+.+.|
T Consensus 9 ~~l~~~~g~~~~if~~L~~~-~I~v~~i 35 (75)
T cd04912 9 NRMLGAHGFLAKVFEIFAKH-GLSVDLI 35 (75)
T ss_pred CCCCCCccHHHHHHHHHHHc-CCeEEEE
Confidence 47888899999999999986 6655444
No 42
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=25.10 E-value=1.6e+02 Score=25.96 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=50.0
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHhhCCChhHHHHHHHHhhcCCCCce
Q 040483 146 GMVDSKEFAVGIFDALARRRGQKIGKITKEELGEFWLQISDQSFDARLQIFFDMYNHLLQVI 207 (231)
Q Consensus 146 GM~dSkEFA~ELFDALaRRR~i~~~~ItK~EL~eFW~qIsDqsFDSRLQiFFDMvDKn~D~~ 207 (231)
.-++++.||.-+|.+--- -.-..|+-.|+--=|..++....+-+|.=-|-|.|.|.||.
T Consensus 58 p~gd~~~y~~~vF~~fD~---~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~ 116 (193)
T KOG0044|consen 58 PDGDASKYAELVFRTFDK---NKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGY 116 (193)
T ss_pred CCCCHHHHHHHHHHHhcc---cCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCce
Confidence 345899999999987642 12356999998888999999999999999999999999994
No 43
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=24.90 E-value=43 Score=26.51 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=10.9
Q ss_pred HHHHHHhhcCCCCce
Q 040483 193 LQIFFDMYNHLLQVI 207 (231)
Q Consensus 193 LQiFFDMvDKn~D~~ 207 (231)
+..||+.||.|.|+-
T Consensus 90 ~~~F~~~CD~n~d~~ 104 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGK 104 (113)
T ss_dssp HHHHHHHH-TT-SSS
T ss_pred HHHHHHHcCCCCCCC
Confidence 567999999999974
No 44
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=24.84 E-value=54 Score=22.55 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=18.4
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCCC
Q 040483 146 GMVDSKEFAVGIFDALARRRGQKI 169 (231)
Q Consensus 146 GM~dSkEFA~ELFDALaRRR~i~~ 169 (231)
||.+...++..+|.||++ .+|+.
T Consensus 10 ~~~~~~gi~~~if~aL~~-~~I~v 32 (64)
T cd04937 10 RIRGVPGVMAKIVGALSK-EGIEI 32 (64)
T ss_pred CccCCcCHHHHHHHHHHH-CCCCE
Confidence 788899999999999954 44443
No 45
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=24.83 E-value=1.7e+02 Score=21.98 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=32.9
Q ss_pred HHHHHHHhhhc----cCCcccccccccc------CCCCcHHHHHHHHHHHhhhcCCCC-CCCCHHHH
Q 040483 122 LVESTFESLSE----DGLLAREDFGECI------GMVDSKEFAVGIFDALARRRGQKI-GKITKEEL 177 (231)
Q Consensus 122 ~VEkRFd~La~----dG~L~Rs~FgeCI------GM~dSkEFA~ELFDALaRRR~i~~-~~ItK~EL 177 (231)
.+=.=|++-+. +|+|+.+.|-+.+ |.+-+.+-+.++|..+ ..+. +.|+=+|+
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~----D~d~dG~Idf~EF 73 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDL----DRNKDQEVNFQEY 73 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----cCCCCCCCcHHHH
Confidence 34445777773 5589888887766 5555777777777766 3332 45665444
No 46
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=24.40 E-value=66 Score=24.55 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 040483 146 GMVDSKEFAVGIFDALARR 164 (231)
Q Consensus 146 GM~dSkEFA~ELFDALaRR 164 (231)
|-+=|.| |..|||||++-
T Consensus 29 ~~~vs~e-gQ~lF~~l~Kt 46 (91)
T PF09793_consen 29 GPGVSPE-GQKLFDALSKT 46 (91)
T ss_pred CCCcCHH-HHHHHHHHHhh
Confidence 4444777 99999999986
No 47
>PLN02964 phosphatidylserine decarboxylase
Probab=24.33 E-value=67 Score=33.12 Aligned_cols=14 Identities=0% Similarity=-0.168 Sum_probs=8.5
Q ss_pred HHHHHHhhcCCCCc
Q 040483 193 LQIFFDMYNHLLQV 206 (231)
Q Consensus 193 LQiFFDMvDKn~D~ 206 (231)
++..|.++|+|.||
T Consensus 181 i~~mf~~~D~DgdG 194 (644)
T PLN02964 181 ARRILAIVDYDEDG 194 (644)
T ss_pred HHHHHHHhCCCCCC
Confidence 45556666666665
No 48
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=23.89 E-value=3.7e+02 Score=21.30 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=7.7
Q ss_pred ccCCcccccccccc
Q 040483 132 EDGLLAREDFGECI 145 (231)
Q Consensus 132 ~dG~L~Rs~FgeCI 145 (231)
.+|++++..+|.|+
T Consensus 21 ~~G~i~~~el~~~l 34 (151)
T KOG0027|consen 21 GDGKISVEELGAVL 34 (151)
T ss_pred CCCcccHHHHHHHH
Confidence 35555555555555
No 49
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.67 E-value=66 Score=21.22 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=18.3
Q ss_pred ccCCCCcHHHHHHHHHHHhhhcCCCC
Q 040483 144 CIGMVDSKEFAVGIFDALARRRGQKI 169 (231)
Q Consensus 144 CIGM~dSkEFA~ELFDALaRRR~i~~ 169 (231)
|.||.+...++..+|++|++ .+|+.
T Consensus 8 g~~~~~~~~~~~~i~~~L~~-~~i~v 32 (66)
T cd04916 8 GEGMKNTVGVSARATAALAK-AGINI 32 (66)
T ss_pred cCCCCCCccHHHHHHHHHHH-CCCCE
Confidence 34677778999999999975 34443
No 50
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=23.56 E-value=64 Score=20.85 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=19.9
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCCCCCCC
Q 040483 146 GMVDSKEFAVGIFDALARRRGQKIGKIT 173 (231)
Q Consensus 146 GM~dSkEFA~ELFDALaRRR~i~~~~It 173 (231)
||.+..+++.++|.+|++ .+|+.+.|+
T Consensus 9 ~~~~~~~~~~~i~~~L~~-~~i~v~~i~ 35 (63)
T cd04936 9 GMRSHPGVAAKMFEALAE-AGINIEMIS 35 (63)
T ss_pred CCCCCccHHHHHHHHHHH-CCCcEEEEE
Confidence 487788999999999965 455554443
No 51
>PF04081 DNA_pol_delta_4: DNA polymerase delta, subunit 4 ; InterPro: IPR007218 DNA polymerase is responsible for effective DNA replication. The function of the delta subunit 4 of DNA polymerase is not yet known.; GO: 0006260 DNA replication, 0005634 nucleus
Probab=22.12 E-value=34 Score=28.72 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=9.3
Q ss_pred cccccccCCCC
Q 040483 139 EDFGECIGMVD 149 (231)
Q Consensus 139 s~FgeCIGM~d 149 (231)
+.||-||||.-
T Consensus 75 ~~yGPC~GitR 85 (124)
T PF04081_consen 75 SQYGPCIGITR 85 (124)
T ss_pred cccCCccCchH
Confidence 57999999963
No 52
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=21.62 E-value=2.6e+02 Score=20.60 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=39.0
Q ss_pred HHHHhhhc----cCCccccccccccC--------CCCcHHHHHHHHHHHhhhcCCC-CCCCCHHHHHHHHHHhh
Q 040483 125 STFESLSE----DGLLAREDFGECIG--------MVDSKEFAVGIFDALARRRGQK-IGKITKEELGEFWLQIS 185 (231)
Q Consensus 125 kRFd~La~----dG~L~Rs~FgeCIG--------M~dSkEFA~ELFDALaRRR~i~-~~~ItK~EL~eFW~qIs 185 (231)
.=|..+.. +|.|....+.+++. -+-+.+.+.++|..+- .. ...|+-+|+..++..++
T Consensus 12 ~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D----~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 12 LTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLD----QNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhC----CCCCCcCcHHHHHHHHHHHH
Confidence 34555542 48999999998864 2347777888887663 23 35799888887776654
No 53
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=21.22 E-value=1.2e+02 Score=28.90 Aligned_cols=85 Identities=26% Similarity=0.357 Sum_probs=48.9
Q ss_pred HHHHhccccccc-cccCCcc------------hHHHHHHHHHHHHhhh--ccCCcccccccc--ccCCC-CcHHHHHHHH
Q 040483 97 AKRALNGLRFIS-KAAGASD------------AEELRRLVESTFESLS--EDGLLAREDFGE--CIGMV-DSKEFAVGIF 158 (231)
Q Consensus 97 A~~ALkGLrFIs-kt~g~~~------------~~~gW~~VEkRFd~La--~dG~L~Rs~Fge--CIGM~-dSkEFA~ELF 158 (231)
.+-+-||+.|++ .|.|+-. ++++|+.+|.=|..|| .+|+|+...=|. -.=|. +--|++ +-
T Consensus 106 ~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYG--mM 183 (300)
T COG1023 106 KLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYG--MM 183 (300)
T ss_pred HHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHH--HH
Confidence 346778999998 3321111 4579999999999999 589997643322 11121 222322 22
Q ss_pred HHHhhhcCCC---CCCCCHHHHHHHHHH
Q 040483 159 DALARRRGQK---IGKITKEELGEFWLQ 183 (231)
Q Consensus 159 DALaRRR~i~---~~~ItK~EL~eFW~q 183 (231)
.|+|.-=+|- .=.+.-++.-+-|.+
T Consensus 184 ~a~aEGfelL~~s~fD~D~~~VA~vW~h 211 (300)
T COG1023 184 QAIAEGFELLKNSPFDYDLEAVAEVWNH 211 (300)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHhC
Confidence 3333332221 245778888888854
No 54
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.00 E-value=77 Score=20.45 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=20.2
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCCCCCCC
Q 040483 146 GMVDSKEFAVGIFDALARRRGQKIGKIT 173 (231)
Q Consensus 146 GM~dSkEFA~ELFDALaRRR~i~~~~It 173 (231)
||.+...++.++|++|++. +|+.+.|+
T Consensus 9 ~~~~~~~~~~~i~~~L~~~-~i~v~~i~ 35 (63)
T cd04923 9 GMRSHPGVAAKMFKALAEA-GINIEMIS 35 (63)
T ss_pred CCCCCccHHHHHHHHHHHC-CCCEEEEE
Confidence 4777789999999999664 66655554
No 55
>PF12373 Msg2_C: Major surface glycoprotein 2 C terminal; InterPro: IPR021041 Pneumocystis can cause potentially fatal pneumonia infections in immunosuppressed people. The most abundant protein on the surface of Pneumocystis is the major surface glycoprotein (Msg), which is encoded by a multi-copy gene family. Variation in the expressed Msg is thought to help this organism evade the host immune response. The Msg sequences segregate into two distinct branches, with recombination further increasing the diversity of the Msg sequences []. This entry represents a conserved domain found towards the C terminus of Msg2, and is usually found in association with PF02349 from PFAM.
Probab=20.82 E-value=67 Score=21.28 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.7
Q ss_pred hcCCCCCCCCHHHHHHH
Q 040483 164 RRGQKIGKITKEELGEF 180 (231)
Q Consensus 164 RR~i~~~~ItK~EL~eF 180 (231)
||++....+|+.|++-|
T Consensus 6 rR~~~~~~VtE~E~kAF 22 (30)
T PF12373_consen 6 RRAYVKVGVTEAEVKAF 22 (30)
T ss_pred eeehhccccCHHHHHHH
Confidence 57777888999999987
No 56
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=20.66 E-value=88 Score=28.18 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHhhhcCCC-------CCCCCHHHHHH
Q 040483 150 SKEFAVGIFDALARRRGQK-------IGKITKEELGE 179 (231)
Q Consensus 150 SkEFA~ELFDALaRRR~i~-------~~~ItK~EL~e 179 (231)
-.+|+.+|||+++-==-|+ ...||+++|++
T Consensus 157 ~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~ 193 (262)
T PF14500_consen 157 ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKR 193 (262)
T ss_pred cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHH
Confidence 4799999999999766654 34699999986
No 57
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=20.50 E-value=54 Score=24.56 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=10.2
Q ss_pred CCCCceeecCC
Q 040483 202 HLLQVIRLIPP 212 (231)
Q Consensus 202 Kn~D~~~~~~~ 212 (231)
||+|.|-+|||
T Consensus 70 ~dGDeVa~~PP 80 (84)
T COG1977 70 KDGDEVAFFPP 80 (84)
T ss_pred CCCCEEEEeCC
Confidence 89999999998
No 58
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.47 E-value=78 Score=21.12 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=17.3
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCCC
Q 040483 146 GMVDSKEFAVGIFDALARRRGQKI 169 (231)
Q Consensus 146 GM~dSkEFA~ELFDALaRRR~i~~ 169 (231)
||.+...++.++|.+|++ .+|+.
T Consensus 10 ~~~~~~~~~~~if~~L~~-~~I~v 32 (66)
T cd04919 10 HMKNMIGIAGRMFTTLAD-HRINI 32 (66)
T ss_pred CCCCCcCHHHHHHHHHHH-CCCCE
Confidence 555678999999999965 45554
Done!