Query 040484
Match_columns 194
No_of_seqs 121 out of 1083
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09481 sspA stringent starva 100.0 4.4E-37 9.5E-42 228.9 18.8 176 5-194 9-196 (211)
2 KOG0406 Glutathione S-transfer 100.0 3.5E-36 7.7E-41 220.3 20.4 183 5-194 8-205 (231)
3 PLN02473 glutathione S-transfe 100.0 1.4E-33 3.1E-38 210.5 17.8 177 6-194 2-205 (214)
4 KOG0868 Glutathione S-transfer 100.0 3.8E-33 8.3E-38 193.2 14.7 178 3-194 2-201 (217)
5 TIGR00862 O-ClC intracellular 100.0 1E-31 2.2E-36 201.2 20.9 176 12-194 16-214 (236)
6 PRK10357 putative glutathione 100.0 3.5E-32 7.6E-37 201.2 17.2 174 7-194 1-194 (202)
7 TIGR01262 maiA maleylacetoacet 100.0 5.3E-32 1.2E-36 201.4 17.8 173 8-194 1-198 (210)
8 COG0625 Gst Glutathione S-tran 100.0 7.2E-32 1.6E-36 200.9 18.1 171 7-193 1-197 (211)
9 PRK13972 GSH-dependent disulfi 100.0 5.1E-32 1.1E-36 202.2 17.3 169 7-194 2-199 (215)
10 PRK15113 glutathione S-transfe 100.0 1.3E-31 2.9E-36 199.8 19.0 173 4-194 3-202 (214)
11 PLN02395 glutathione S-transfe 100.0 7.9E-32 1.7E-36 201.2 17.6 176 6-194 2-204 (215)
12 PLN02378 glutathione S-transfe 100.0 1.7E-31 3.7E-36 199.0 18.6 173 11-194 16-193 (213)
13 PRK10542 glutathionine S-trans 100.0 6.6E-32 1.4E-36 199.6 15.8 171 7-194 1-191 (201)
14 PRK11752 putative S-transferas 100.0 1.1E-30 2.3E-35 200.3 18.0 178 5-194 43-252 (264)
15 PLN02817 glutathione dehydroge 100.0 6E-30 1.3E-34 195.5 18.3 170 13-194 71-245 (265)
16 PTZ00057 glutathione s-transfe 100.0 4.4E-29 9.6E-34 185.0 18.0 174 1-194 1-193 (205)
17 PRK10387 glutaredoxin 2; Provi 100.0 3.5E-29 7.6E-34 186.2 13.7 166 7-194 1-207 (210)
18 KOG0867 Glutathione S-transfer 100.0 2.9E-28 6.4E-33 182.6 17.4 176 6-193 2-202 (226)
19 KOG1695 Glutathione S-transfer 100.0 7.3E-27 1.6E-31 170.2 16.8 176 4-194 1-194 (206)
20 TIGR02182 GRXB Glutaredoxin, G 99.9 7.3E-27 1.6E-31 173.6 15.3 164 8-194 1-206 (209)
21 KOG4420 Uncharacterized conser 99.9 4.7E-24 1E-28 156.3 12.2 183 6-194 26-281 (325)
22 KOG1422 Intracellular Cl- chan 99.9 6.1E-23 1.3E-27 146.3 15.5 174 13-194 19-199 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 1.5E-21 3.2E-26 166.1 17.6 156 7-193 3-159 (722)
24 PF13417 GST_N_3: Glutathione 99.9 3.4E-21 7.4E-26 120.2 8.7 74 9-83 1-74 (75)
25 KOG3029 Glutathione S-transfer 99.9 2.9E-20 6.2E-25 138.0 14.6 170 6-190 90-354 (370)
26 cd03059 GST_N_SspA GST_N famil 99.8 3.3E-20 7.1E-25 115.2 9.0 73 7-80 1-73 (73)
27 cd03061 GST_N_CLIC GST_N famil 99.8 3.6E-20 7.8E-25 118.3 8.4 71 13-84 20-90 (91)
28 cd03058 GST_N_Tau GST_N family 99.8 6E-20 1.3E-24 114.3 9.0 74 7-80 1-74 (74)
29 cd03052 GST_N_GDAP1 GST_N fami 99.8 4.5E-20 9.7E-25 114.4 8.3 70 7-77 1-73 (73)
30 cd03041 GST_N_2GST_N GST_N fam 99.8 1.6E-19 3.4E-24 113.2 8.3 73 7-80 2-77 (77)
31 cd03045 GST_N_Delta_Epsilon GS 99.8 2.9E-19 6.2E-24 111.2 8.6 71 7-78 1-74 (74)
32 cd03060 GST_N_Omega_like GST_N 99.8 2.7E-19 5.8E-24 110.5 8.3 69 7-76 1-70 (71)
33 cd03076 GST_N_Pi GST_N family, 99.8 1.6E-19 3.4E-24 112.0 7.1 72 6-78 1-72 (73)
34 cd03053 GST_N_Phi GST_N family 99.8 6.5E-19 1.4E-23 110.2 8.8 72 7-79 2-76 (76)
35 cd03050 GST_N_Theta GST_N fami 99.8 1.4E-18 3.1E-23 108.6 9.0 73 7-80 1-76 (76)
36 cd03056 GST_N_4 GST_N family, 99.8 1.9E-18 4.1E-23 107.1 8.5 70 7-77 1-73 (73)
37 cd03048 GST_N_Ure2p_like GST_N 99.8 2.9E-18 6.3E-23 108.6 9.1 73 7-81 2-80 (81)
38 cd03055 GST_N_Omega GST_N fami 99.8 2.3E-18 5.1E-23 110.9 8.7 73 4-77 16-89 (89)
39 cd03037 GST_N_GRX2 GST_N famil 99.8 2E-18 4.3E-23 106.5 7.8 70 7-78 1-71 (71)
40 cd03044 GST_N_EF1Bgamma GST_N 99.8 2.6E-18 5.7E-23 107.1 8.1 70 8-78 2-74 (75)
41 cd03049 GST_N_3 GST_N family, 99.8 2.3E-18 5.1E-23 106.8 7.7 70 7-77 1-73 (73)
42 cd03039 GST_N_Sigma_like GST_N 99.8 1.8E-18 3.9E-23 107.0 6.8 71 7-78 1-72 (72)
43 cd03051 GST_N_GTT2_like GST_N 99.8 3.5E-18 7.6E-23 106.1 7.7 70 7-77 1-74 (74)
44 cd03047 GST_N_2 GST_N family, 99.8 5.2E-18 1.1E-22 105.3 8.3 70 7-77 1-73 (73)
45 cd03046 GST_N_GTT1_like GST_N 99.8 8.6E-18 1.9E-22 105.0 8.8 73 7-81 1-76 (76)
46 cd03040 GST_N_mPGES2 GST_N fam 99.8 5.3E-18 1.1E-22 106.3 7.7 72 6-80 1-76 (77)
47 cd03042 GST_N_Zeta GST_N famil 99.7 8.5E-18 1.8E-22 104.2 8.2 70 7-77 1-73 (73)
48 cd03057 GST_N_Beta GST_N famil 99.7 1.7E-17 3.7E-22 104.0 8.5 73 7-81 1-77 (77)
49 PF13409 GST_N_2: Glutathione 99.7 1.8E-17 3.9E-22 101.9 7.3 65 14-79 1-70 (70)
50 cd03077 GST_N_Alpha GST_N fami 99.7 3.8E-17 8.2E-22 102.8 8.6 72 6-81 1-77 (79)
51 KOG4244 Failed axon connection 99.7 1E-16 2.2E-21 118.6 11.6 166 7-191 46-273 (281)
52 cd03075 GST_N_Mu GST_N family, 99.7 4.4E-17 9.5E-22 103.2 8.0 73 7-80 1-82 (82)
53 cd03080 GST_N_Metaxin_like GST 99.7 5.9E-17 1.3E-21 101.0 8.3 67 7-81 2-75 (75)
54 COG2999 GrxB Glutaredoxin 2 [P 99.7 1.4E-16 3E-21 111.0 9.5 165 7-193 1-206 (215)
55 PF02798 GST_N: Glutathione S- 99.7 2.7E-16 5.8E-21 98.2 8.9 72 7-78 1-76 (76)
56 cd00570 GST_N_family Glutathio 99.7 2.7E-16 5.8E-21 96.1 8.3 70 7-77 1-71 (71)
57 cd03038 GST_N_etherase_LigE GS 99.7 1.9E-16 4.1E-21 100.9 7.8 67 13-81 14-84 (84)
58 cd03043 GST_N_1 GST_N family, 99.7 6.1E-16 1.3E-20 95.8 7.7 65 12-77 7-73 (73)
59 cd03054 GST_N_Metaxin GST_N fa 99.6 1.9E-15 4.2E-20 93.4 7.8 65 7-79 1-72 (72)
60 COG0435 ECM4 Predicted glutath 99.6 1.1E-14 2.3E-19 108.4 10.4 183 3-194 48-280 (324)
61 KOG2903 Predicted glutathione 99.5 3.5E-13 7.5E-18 99.6 9.4 182 5-194 36-282 (319)
62 cd03185 GST_C_Tau GST_C family 99.5 5E-13 1.1E-17 91.3 9.5 96 92-194 2-109 (126)
63 cd03196 GST_C_5 GST_C family, 99.4 7.9E-13 1.7E-17 89.1 8.9 94 90-194 3-111 (115)
64 TIGR02190 GlrX-dom Glutaredoxi 99.4 7.9E-13 1.7E-17 83.1 8.1 74 3-77 6-79 (79)
65 cd03186 GST_C_SspA GST_N famil 99.4 1.8E-12 4E-17 86.1 8.3 90 92-194 2-103 (107)
66 cd03200 GST_C_JTV1 GST_C famil 99.4 2.5E-12 5.3E-17 83.8 7.7 96 73-191 1-96 (96)
67 cd03189 GST_C_GTT1_like GST_C 99.4 6.9E-12 1.5E-16 84.8 9.8 91 88-192 2-119 (119)
68 cd03079 GST_N_Metaxin2 GST_N f 99.4 3.3E-12 7.2E-17 78.4 7.3 60 13-79 15-74 (74)
69 PF00043 GST_C: Glutathione S- 99.4 2.2E-12 4.7E-17 83.8 6.6 70 110-192 25-95 (95)
70 cd03184 GST_C_Omega GST_C fami 99.3 5.3E-12 1.1E-16 86.2 8.2 81 108-194 27-107 (124)
71 PRK10638 glutaredoxin 3; Provi 99.3 8.2E-12 1.8E-16 79.2 7.9 71 5-76 2-73 (83)
72 cd03182 GST_C_GTT2_like GST_C 99.3 1.2E-11 2.6E-16 83.4 8.9 71 111-194 47-117 (117)
73 cd03190 GST_C_ECM4_like GST_C 99.3 1.7E-11 3.6E-16 85.7 9.8 81 107-194 31-112 (142)
74 cd03177 GST_C_Delta_Epsilon GS 99.3 1.1E-11 2.4E-16 83.8 8.4 73 109-194 34-106 (118)
75 cd03188 GST_C_Beta GST_C famil 99.3 9.7E-12 2.1E-16 83.3 8.0 70 111-194 41-110 (114)
76 cd03029 GRX_hybridPRX5 Glutare 99.3 2.3E-11 5.1E-16 74.9 8.2 71 6-77 2-72 (72)
77 PF13410 GST_C_2: Glutathione 99.3 1.2E-11 2.6E-16 75.5 6.7 68 109-187 2-69 (69)
78 cd03198 GST_C_CLIC GST_C famil 99.3 1.2E-11 2.5E-16 84.9 6.8 83 107-194 23-118 (134)
79 cd03201 GST_C_DHAR GST_C famil 99.3 9.2E-11 2E-15 79.7 10.8 74 112-194 29-104 (121)
80 cd03180 GST_C_2 GST_C family, 99.3 3.7E-11 8E-16 80.0 7.9 70 111-194 41-110 (110)
81 cd03204 GST_C_GDAP1 GST_C fami 99.2 4.6E-11 1E-15 79.5 7.9 82 108-194 24-111 (111)
82 cd03187 GST_C_Phi GST_C family 99.2 2.3E-11 5E-16 82.0 6.6 73 110-194 42-114 (118)
83 cd03178 GST_C_Ure2p_like GST_C 99.2 2.6E-11 5.6E-16 81.2 6.7 72 110-194 37-108 (113)
84 cd03206 GST_C_7 GST_C family, 99.2 3.2E-11 6.9E-16 79.1 7.0 71 110-194 30-100 (100)
85 cd03191 GST_C_Zeta GST_C famil 99.2 6.6E-11 1.4E-15 80.3 8.5 70 113-194 44-113 (121)
86 cd03210 GST_C_Pi GST_C family, 99.2 1.2E-10 2.7E-15 79.6 8.4 75 110-194 32-106 (126)
87 cd03209 GST_C_Mu GST_C family, 99.2 7E-11 1.5E-15 80.3 6.4 72 110-194 32-103 (121)
88 cd03208 GST_C_Alpha GST_C fami 99.2 2.3E-10 5.1E-15 79.4 8.7 69 115-194 41-109 (137)
89 cd03078 GST_N_Metaxin1_like GS 99.1 3.2E-10 7E-15 69.9 7.7 59 13-79 14-72 (73)
90 cd03183 GST_C_Theta GST_C fami 99.1 2.1E-10 4.5E-15 78.4 7.0 74 109-194 41-116 (126)
91 KOG3027 Mitochondrial outer me 99.1 2.4E-09 5.2E-14 76.9 12.1 160 14-190 33-247 (257)
92 cd03207 GST_C_8 GST_C family, 99.1 1.7E-10 3.7E-15 76.0 5.9 69 111-194 28-96 (103)
93 PF14497 GST_C_3: Glutathione 99.1 2.2E-10 4.7E-15 75.1 6.0 87 91-190 3-99 (99)
94 cd03027 GRX_DEP Glutaredoxin ( 99.1 5.7E-10 1.2E-14 68.9 7.4 69 5-74 1-70 (73)
95 cd03203 GST_C_Lambda GST_C fam 99.1 4.2E-10 9E-15 76.4 7.3 98 90-194 1-105 (120)
96 cd03179 GST_C_1 GST_C family, 99.1 4.1E-10 9E-15 74.2 6.6 66 110-189 40-105 (105)
97 cd03202 GST_C_etherase_LigE GS 99.1 4.5E-10 9.7E-15 76.6 6.8 69 111-191 56-124 (124)
98 cd03181 GST_C_EFB1gamma GST_C 99.1 5.1E-10 1.1E-14 76.0 7.1 75 109-194 36-110 (123)
99 PRK10329 glutaredoxin-like pro 99.0 9.1E-10 2E-14 69.3 6.8 61 6-67 2-62 (81)
100 cd02066 GRX_family Glutaredoxi 99.0 2.1E-09 4.5E-14 65.6 7.5 69 6-75 1-70 (72)
101 cd00299 GST_C_family Glutathio 99.0 2E-09 4.4E-14 69.9 7.5 70 108-188 31-100 (100)
102 cd03193 GST_C_Metaxin GST_C fa 99.0 1.2E-09 2.6E-14 69.9 5.9 72 111-189 17-88 (88)
103 TIGR02196 GlrX_YruB Glutaredox 99.0 2.8E-09 6.1E-14 65.4 7.1 70 6-76 1-73 (74)
104 cd03192 GST_C_Sigma_like GST_C 99.0 4.2E-09 9.1E-14 69.4 7.9 68 109-188 35-104 (104)
105 cd03418 GRX_GRXb_1_3_like Glut 98.9 6.6E-09 1.4E-13 64.3 7.5 71 6-77 1-73 (75)
106 cd02976 NrdH NrdH-redoxin (Nrd 98.9 4.3E-09 9.4E-14 64.5 6.5 62 6-68 1-63 (73)
107 COG0695 GrxC Glutaredoxin and 98.9 2E-08 4.4E-13 62.9 7.7 69 6-75 2-73 (80)
108 KOG3028 Translocase of outer m 98.8 3.2E-07 6.9E-12 70.2 15.2 161 13-190 15-233 (313)
109 TIGR02181 GRX_bact Glutaredoxi 98.8 2.3E-08 4.9E-13 62.6 7.2 70 7-77 1-71 (79)
110 cd03211 GST_C_Metaxin2 GST_C f 98.8 1.9E-08 4.2E-13 68.7 7.2 72 108-189 52-126 (126)
111 TIGR02200 GlrX_actino Glutared 98.8 2.8E-08 6E-13 61.7 7.3 70 6-76 1-75 (77)
112 cd03195 GST_C_4 GST_C family, 98.8 1.1E-08 2.5E-13 68.6 5.8 66 112-194 41-107 (114)
113 PF00462 Glutaredoxin: Glutare 98.8 1.1E-08 2.5E-13 60.5 4.9 59 7-66 1-60 (60)
114 TIGR02189 GlrX-like_plant Glut 98.8 7.8E-08 1.7E-12 62.9 8.8 71 4-75 7-81 (99)
115 cd03194 GST_C_3 GST_C family, 98.8 2.2E-08 4.7E-13 67.3 6.3 70 111-194 39-108 (114)
116 TIGR02194 GlrX_NrdH Glutaredox 98.8 2.7E-08 5.8E-13 61.2 6.1 57 7-64 1-57 (72)
117 PHA03050 glutaredoxin; Provisi 98.8 8E-08 1.7E-12 63.7 8.7 70 4-74 12-88 (108)
118 cd03419 GRX_GRXh_1_2_like Glut 98.7 9.7E-08 2.1E-12 60.0 8.3 72 6-78 1-76 (82)
119 PRK11200 grxA glutaredoxin 1; 98.7 8.9E-08 1.9E-12 60.8 8.1 75 6-81 2-84 (85)
120 cd03197 GST_C_mPGES2 GST_C fam 98.7 2.9E-08 6.2E-13 69.0 5.9 67 113-190 79-145 (149)
121 cd03205 GST_C_6 GST_C family, 98.7 7.9E-08 1.7E-12 62.7 6.4 67 108-188 32-98 (98)
122 TIGR02183 GRXA Glutaredoxin, G 98.7 2.4E-07 5.1E-12 59.0 8.1 75 7-81 2-83 (86)
123 cd03212 GST_C_Metaxin1_3 GST_C 98.6 1.1E-07 2.4E-12 65.9 6.0 73 110-190 61-134 (137)
124 TIGR00365 monothiol glutaredox 98.6 3E-07 6.5E-12 59.9 7.6 72 4-76 11-88 (97)
125 TIGR02180 GRX_euk Glutaredoxin 98.5 1E-06 2.2E-11 55.5 8.4 70 7-77 1-76 (84)
126 cd03028 GRX_PICOT_like Glutare 98.5 7.2E-07 1.6E-11 57.3 7.7 72 4-76 7-84 (90)
127 PRK10824 glutaredoxin-4; Provi 98.2 8.8E-06 1.9E-10 54.4 7.6 71 4-75 14-90 (115)
128 PRK12759 bifunctional gluaredo 98.2 7.9E-06 1.7E-10 66.7 8.1 70 4-74 1-79 (410)
129 cd03031 GRX_GRX_like Glutaredo 98.1 2.7E-05 5.9E-10 54.4 7.8 69 6-75 1-80 (147)
130 KOG1752 Glutaredoxin and relat 98.0 3.8E-05 8.2E-10 50.3 7.3 73 3-76 12-88 (104)
131 PF10568 Tom37: Outer mitochon 98.0 5E-05 1.1E-09 46.5 6.6 55 14-76 13-71 (72)
132 PTZ00062 glutaredoxin; Provisi 97.8 0.00012 2.6E-09 54.0 7.7 71 4-75 112-188 (204)
133 cd02973 TRX_GRX_like Thioredox 97.8 0.00013 2.7E-09 43.8 6.6 58 6-67 2-64 (67)
134 PF14834 GST_C_4: Glutathione 97.7 0.00018 3.9E-09 47.5 6.2 66 112-193 42-107 (117)
135 COG4545 Glutaredoxin-related p 97.6 0.00032 6.9E-09 42.4 5.6 63 4-67 1-77 (85)
136 cd03036 ArsC_like Arsenate Red 97.2 0.0006 1.3E-08 45.4 4.4 34 7-40 1-34 (111)
137 cd02977 ArsC_family Arsenate R 97.2 0.00063 1.4E-08 44.8 4.0 33 7-39 1-33 (105)
138 PRK01655 spxA transcriptional 97.1 0.00091 2E-08 45.9 4.3 34 7-40 2-35 (131)
139 KOG1147 Glutamyl-tRNA syntheta 97.0 0.00069 1.5E-08 56.0 3.4 113 56-186 38-150 (712)
140 TIGR00412 redox_disulf_2 small 97.0 0.0059 1.3E-07 37.6 6.8 56 6-67 2-61 (76)
141 cd03032 ArsC_Spx Arsenate Redu 97.0 0.0014 3.1E-08 43.9 4.2 33 7-39 2-34 (115)
142 COG0278 Glutaredoxin-related p 96.9 0.007 1.5E-07 38.9 6.9 71 4-75 14-91 (105)
143 TIGR01617 arsC_related transcr 96.9 0.0016 3.4E-08 43.8 4.0 33 7-39 1-33 (117)
144 PF05768 DUF836: Glutaredoxin- 96.9 0.0056 1.2E-07 38.2 6.2 55 6-63 1-57 (81)
145 TIGR00411 redox_disulf_1 small 96.9 0.0069 1.5E-07 37.5 6.6 57 6-64 2-62 (82)
146 PF04399 Glutaredoxin2_C: Glut 96.7 0.0018 4E-08 44.3 3.4 68 109-192 55-122 (132)
147 PRK12559 transcriptional regul 96.7 0.0042 9E-08 42.7 5.1 34 7-40 2-35 (131)
148 cd03199 GST_C_GRX2 GST_C famil 96.7 0.0053 1.1E-07 41.7 5.4 67 112-194 59-125 (128)
149 cd03030 GRX_SH3BGR Glutaredoxi 96.7 0.018 3.9E-07 37.0 7.5 67 7-74 2-79 (92)
150 PRK13344 spxA transcriptional 96.6 0.0056 1.2E-07 42.1 5.2 34 7-40 2-35 (132)
151 cd03035 ArsC_Yffb Arsenate Red 96.5 0.0069 1.5E-07 39.9 4.9 33 7-39 1-33 (105)
152 cd03026 AhpF_NTD_C TRX-GRX-lik 96.5 0.019 4.2E-07 36.5 6.7 58 6-67 15-77 (89)
153 PRK10026 arsenate reductase; P 96.4 0.006 1.3E-07 42.3 4.3 34 5-38 2-35 (141)
154 cd03033 ArsC_15kD Arsenate Red 96.3 0.0068 1.5E-07 40.5 4.1 33 7-39 2-34 (113)
155 PHA02125 thioredoxin-like prot 96.3 0.021 4.5E-07 35.0 5.8 52 7-62 2-53 (75)
156 cd01659 TRX_superfamily Thiore 96.0 0.023 5E-07 32.3 4.8 54 7-61 1-59 (69)
157 COG1393 ArsC Arsenate reductas 95.9 0.015 3.3E-07 39.1 4.2 33 6-38 2-34 (117)
158 PF13192 Thioredoxin_3: Thiore 95.8 0.11 2.3E-06 31.9 7.6 58 6-69 2-63 (76)
159 TIGR01616 nitro_assoc nitrogen 95.5 0.029 6.3E-07 38.2 4.3 33 6-38 2-34 (126)
160 PF11287 DUF3088: Protein of u 95.2 0.087 1.9E-06 34.7 5.6 70 13-82 22-109 (112)
161 TIGR00014 arsC arsenate reduct 95.1 0.037 7.9E-07 37.0 3.9 32 7-38 1-32 (114)
162 cd03034 ArsC_ArsC Arsenate Red 95.1 0.038 8.3E-07 36.8 3.9 31 7-37 1-31 (112)
163 PRK10853 putative reductase; P 95.0 0.044 9.5E-07 36.9 3.9 32 7-38 2-33 (118)
164 KOG0911 Glutaredoxin-related p 94.4 0.19 4.1E-06 37.4 6.4 71 5-76 139-215 (227)
165 cd02975 PfPDO_like_N Pyrococcu 93.2 0.45 9.7E-06 31.6 6.1 53 6-60 24-80 (113)
166 PF04908 SH3BGR: SH3-binding, 92.2 1.3 2.8E-05 28.8 7.0 68 6-74 2-85 (99)
167 TIGR01295 PedC_BrcD bacterioci 90.9 1.6 3.4E-05 29.5 6.7 32 7-38 27-62 (122)
168 PF00085 Thioredoxin: Thioredo 90.8 2.8 6.1E-05 26.5 8.7 70 7-78 21-102 (103)
169 cd02989 Phd_like_TxnDC9 Phosdu 90.7 1.3 2.8E-05 29.3 6.1 59 7-67 26-89 (113)
170 TIGR02187 GlrX_arch Glutaredox 90.5 1.9 4.1E-05 32.1 7.5 55 6-62 136-193 (215)
171 COG3019 Predicted metal-bindin 89.3 1.9 4.2E-05 29.7 5.9 74 4-80 25-104 (149)
172 cd02949 TRX_NTR TRX domain, no 88.9 2.7 5.9E-05 26.7 6.4 58 7-66 17-80 (97)
173 cd02953 DsbDgamma DsbD gamma f 88.7 1.6 3.4E-05 28.1 5.3 53 7-60 15-77 (104)
174 cd02963 TRX_DnaJ TRX domain, D 88.6 3.1 6.6E-05 27.3 6.6 57 7-65 28-91 (111)
175 PF03960 ArsC: ArsC family; I 88.4 0.68 1.5E-05 30.5 3.3 29 10-38 1-29 (110)
176 TIGR03143 AhpF_homolog putativ 88.4 1.8 3.8E-05 37.2 6.6 58 6-67 479-541 (555)
177 PHA02278 thioredoxin-like prot 88.1 4.4 9.6E-05 26.4 7.0 59 7-66 18-85 (103)
178 PRK15317 alkyl hydroperoxide r 87.0 0.81 1.8E-05 38.8 3.8 72 6-79 119-197 (517)
179 TIGR03140 AhpF alkyl hydropero 86.8 0.72 1.6E-05 39.2 3.3 72 6-79 120-198 (515)
180 TIGR02187 GlrX_arch Glutaredox 86.6 4.2 9.2E-05 30.2 7.1 57 6-64 22-88 (215)
181 cd02984 TRX_PICOT TRX domain, 86.3 3.1 6.7E-05 26.2 5.5 57 7-65 18-80 (97)
182 PF11801 Tom37_C: Tom37 C-term 86.2 2.4 5.1E-05 30.4 5.3 42 115-160 110-154 (168)
183 cd02951 SoxW SoxW family; SoxW 85.4 3.8 8.3E-05 27.3 5.8 53 7-60 18-89 (125)
184 PRK09381 trxA thioredoxin; Pro 85.2 6.3 0.00014 25.5 6.7 58 7-66 25-88 (109)
185 cd02954 DIM1 Dim1 family; Dim1 84.8 5.3 0.00012 26.7 6.1 56 9-66 20-81 (114)
186 PTZ00051 thioredoxin; Provisio 84.5 7.2 0.00016 24.5 6.6 57 7-65 22-83 (98)
187 PRK10996 thioredoxin 2; Provis 83.2 10 0.00022 26.1 7.3 58 7-66 56-119 (139)
188 cd02948 TRX_NDPK TRX domain, T 83.1 9.1 0.0002 24.5 6.7 56 7-65 21-83 (102)
189 cd02947 TRX_family TRX family; 83.0 8 0.00017 23.3 6.9 56 7-64 14-74 (93)
190 cd02956 ybbN ybbN protein fami 82.4 9.6 0.00021 23.8 7.0 57 7-65 16-78 (96)
191 cd03003 PDI_a_ERdj5_N PDIa fam 81.8 7.7 0.00017 24.7 5.9 56 7-64 22-83 (101)
192 cd02962 TMX2 TMX2 family; comp 81.8 9.1 0.0002 26.9 6.6 60 7-67 51-122 (152)
193 cd02957 Phd_like Phosducin (Ph 80.4 6.9 0.00015 25.6 5.5 58 7-67 28-90 (113)
194 cd02959 ERp19 Endoplasmic reti 80.0 8.9 0.00019 25.5 5.9 59 7-66 23-90 (117)
195 PF09635 MetRS-N: MetRS-N bind 78.7 1.9 4.1E-05 29.0 2.2 29 54-82 34-64 (122)
196 KOG3425 Uncharacterized conser 78.4 8.9 0.00019 25.8 5.2 67 12-79 42-122 (128)
197 PF04134 DUF393: Protein of un 77.5 9.7 0.00021 24.9 5.5 69 9-79 1-77 (114)
198 cd02985 TRX_CDSP32 TRX family, 75.9 18 0.00039 23.2 6.6 59 7-66 19-84 (103)
199 cd02997 PDI_a_PDIR PDIa family 75.8 17 0.00037 22.9 6.5 57 7-64 21-86 (104)
200 cd02993 PDI_a_APS_reductase PD 75.7 14 0.00031 23.9 5.8 54 6-60 24-83 (109)
201 cd02994 PDI_a_TMX PDIa family, 75.5 15 0.00032 23.2 5.8 53 6-60 19-76 (101)
202 cd03004 PDI_a_ERdj5_C PDIa fam 74.1 11 0.00024 24.0 4.9 52 7-60 23-78 (104)
203 cd02965 HyaE HyaE family; HyaE 73.8 13 0.00028 24.7 5.2 60 6-67 30-97 (111)
204 cd02952 TRP14_like Human TRX-r 73.6 23 0.0005 23.8 6.5 54 13-67 38-104 (119)
205 cd02987 Phd_like_Phd Phosducin 72.8 26 0.00056 25.2 7.0 58 7-67 87-149 (175)
206 TIGR01068 thioredoxin thioredo 72.5 20 0.00044 22.2 8.5 56 7-64 18-79 (101)
207 cd03020 DsbA_DsbC_DsbG DsbA fa 72.4 7.9 0.00017 28.2 4.4 22 6-27 80-101 (197)
208 PTZ00443 Thioredoxin domain-co 71.6 41 0.00088 25.4 8.7 73 7-81 56-140 (224)
209 cd02950 TxlA TRX-like protein 71.5 25 0.00054 24.2 6.5 53 7-60 24-81 (142)
210 cd02999 PDI_a_ERp44_like PDIa 71.3 12 0.00026 24.0 4.6 53 7-60 22-77 (100)
211 cd03065 PDI_b_Calsequestrin_N 70.3 30 0.00065 23.2 7.1 48 30-79 64-118 (120)
212 PF06110 DUF953: Eukaryotic pr 69.9 6.2 0.00013 26.6 3.0 59 12-71 35-107 (119)
213 cd02996 PDI_a_ERp44 PDIa famil 69.4 20 0.00042 23.1 5.4 56 7-64 22-89 (108)
214 cd03006 PDI_a_EFP1_N PDIa fami 67.7 15 0.00032 24.4 4.5 52 7-60 33-89 (113)
215 PTZ00102 disulphide isomerase; 67.1 48 0.001 27.6 8.5 74 7-82 53-140 (477)
216 cd03005 PDI_a_ERp46 PDIa famil 66.8 29 0.00062 21.7 6.1 56 7-64 20-84 (102)
217 PRK10877 protein disulfide iso 66.0 11 0.00023 28.6 4.0 23 6-28 110-132 (232)
218 TIGR01130 ER_PDI_fam protein d 64.8 49 0.0011 27.3 8.1 73 7-81 22-110 (462)
219 cd03002 PDI_a_MPD1_like PDI fa 64.6 34 0.00074 21.8 6.3 53 7-60 22-79 (109)
220 KOG2824 Glutaredoxin-related p 64.5 15 0.00032 28.5 4.4 69 6-75 132-211 (281)
221 cd02955 SSP411 TRX domain, SSP 64.4 37 0.00081 22.9 6.0 58 10-69 22-97 (124)
222 PRK11657 dsbG disulfide isomer 64.0 11 0.00024 28.8 3.8 21 6-26 120-140 (251)
223 PF13098 Thioredoxin_2: Thiore 63.8 8 0.00017 25.0 2.7 35 6-40 8-49 (112)
224 cd02961 PDI_a_family Protein D 63.4 32 0.00069 21.0 5.9 53 6-60 18-76 (101)
225 cd03000 PDI_a_TMX3 PDIa family 62.3 38 0.00082 21.5 6.0 52 7-60 19-77 (104)
226 KOG0907 Thioredoxin [Posttrans 62.0 31 0.00067 22.6 5.1 57 8-66 26-87 (106)
227 cd02972 DsbA_family DsbA famil 61.7 17 0.00036 22.3 3.8 22 7-28 1-22 (98)
228 TIGR01126 pdi_dom protein disu 61.1 37 0.00081 21.1 6.1 53 6-60 16-74 (102)
229 PHA03075 glutaredoxin-like pro 59.8 16 0.00036 24.4 3.4 35 6-40 4-38 (123)
230 COG3011 Predicted thiol-disulf 58.4 59 0.0013 22.5 7.2 76 5-80 8-87 (137)
231 cd02998 PDI_a_ERp38 PDIa famil 56.5 39 0.00084 21.1 5.0 54 6-60 21-80 (105)
232 KOG1668 Elongation factor 1 be 56.1 7.7 0.00017 29.2 1.6 33 119-156 10-42 (231)
233 cd03024 DsbA_FrnE DsbA family, 55.0 17 0.00036 26.3 3.3 19 7-25 1-19 (201)
234 KOG0910 Thioredoxin-like prote 54.2 41 0.0009 23.6 4.9 58 7-66 65-128 (150)
235 PF13728 TraF: F plasmid trans 52.3 57 0.0012 24.3 5.8 54 5-60 122-188 (215)
236 PLN02309 5'-adenylylsulfate re 51.8 51 0.0011 27.8 5.9 53 7-60 369-427 (457)
237 cd03001 PDI_a_P5 PDIa family, 51.6 57 0.0012 20.3 5.6 52 7-60 22-77 (103)
238 cd03021 DsbA_GSTK DsbA family, 51.6 26 0.00056 25.8 3.9 34 5-38 1-38 (209)
239 cd02995 PDI_a_PDI_a'_C PDIa fa 50.9 28 0.0006 21.8 3.6 51 7-60 22-78 (104)
240 TIGR02681 phage_pRha phage reg 50.8 20 0.00043 23.6 2.8 26 56-81 2-28 (108)
241 PRK09266 hypothetical protein; 50.0 31 0.00067 26.5 4.2 59 24-83 200-261 (266)
242 COG3118 Thioredoxin domain-con 49.6 75 0.0016 25.1 6.1 74 7-82 47-132 (304)
243 TIGR03759 conj_TIGR03759 integ 47.3 75 0.0016 23.5 5.5 33 6-38 111-143 (200)
244 cd03023 DsbA_Com1_like DsbA fa 46.8 21 0.00046 24.2 2.7 21 6-26 8-28 (154)
245 PF01323 DSBA: DSBA-like thior 46.6 22 0.00048 25.4 2.8 36 6-41 1-41 (193)
246 KOG2501 Thioredoxin, nucleored 45.5 44 0.00096 23.7 4.0 36 7-42 36-79 (157)
247 cd03022 DsbA_HCCA_Iso DsbA fam 44.7 35 0.00075 24.3 3.6 31 7-37 1-35 (192)
248 cd02970 PRX_like2 Peroxiredoxi 42.3 46 0.001 22.4 3.8 51 12-64 33-90 (149)
249 PF13462 Thioredoxin_4: Thiore 41.6 30 0.00064 23.8 2.8 21 6-26 15-35 (162)
250 COG5515 Uncharacterized conser 41.1 26 0.00056 20.5 1.9 22 6-27 2-27 (70)
251 PF09849 DUF2076: Uncharacteri 40.4 1.7E+02 0.0037 22.5 7.6 60 69-130 6-72 (247)
252 TIGR00424 APS_reduc 5'-adenyly 40.3 1E+02 0.0022 26.1 6.0 53 7-60 375-433 (463)
253 COG5494 Predicted thioredoxin/ 38.4 1.2E+02 0.0026 22.8 5.4 73 5-79 11-87 (265)
254 cd02988 Phd_like_VIAF Phosduci 38.3 58 0.0013 23.8 3.9 55 8-67 107-166 (192)
255 cd03019 DsbA_DsbA DsbA family, 37.9 47 0.001 23.3 3.4 22 5-26 17-38 (178)
256 KOG0730 AAA+-type ATPase [Post 37.7 43 0.00093 29.5 3.5 35 1-35 465-499 (693)
257 COG2761 FrnE Predicted dithiol 35.5 30 0.00065 26.1 2.0 23 6-28 7-29 (225)
258 TIGR02740 TraF-like TraF-like 35.3 1.2E+02 0.0026 23.5 5.4 20 7-26 170-189 (271)
259 PF09314 DUF1972: Domain of un 35.3 32 0.0007 25.1 2.1 24 64-87 156-180 (185)
260 cd03025 DsbA_FrnE_like DsbA fa 34.9 28 0.00061 24.9 1.8 21 6-26 2-22 (193)
261 PF14595 Thioredoxin_9: Thiore 34.8 56 0.0012 22.2 3.1 69 6-76 44-124 (129)
262 PF07728 AAA_5: AAA domain (dy 33.8 1.3E+02 0.0029 20.0 5.0 41 6-46 1-41 (139)
263 PRK13703 conjugal pilus assemb 33.6 1.4E+02 0.003 23.0 5.4 35 5-39 145-183 (248)
264 PF11417 Inhibitor_G39P: Loade 33.6 1.1E+02 0.0024 18.4 6.1 63 68-151 5-69 (71)
265 cd04911 ACT_AKiii-YclM-BS_1 AC 33.4 51 0.0011 20.2 2.5 24 14-37 14-37 (76)
266 cd02992 PDI_a_QSOX PDIa family 33.1 71 0.0015 20.9 3.4 53 7-60 23-83 (114)
267 PF08534 Redoxin: Redoxin; In 32.8 71 0.0015 21.6 3.5 48 14-63 40-94 (146)
268 PF09413 DUF2007: Domain of un 32.1 51 0.0011 19.2 2.3 32 7-38 1-32 (67)
269 PF06053 DUF929: Domain of unk 32.0 54 0.0012 25.2 2.9 22 7-28 62-83 (249)
270 PF00731 AIRC: AIR carboxylase 31.7 74 0.0016 22.4 3.4 34 14-47 12-45 (150)
271 PF15608 PELOTA_1: PELOTA RNA 31.5 96 0.0021 20.2 3.6 30 7-36 58-87 (100)
272 cd02986 DLP Dim1 family, Dim1- 31.1 1.6E+02 0.0036 19.6 5.7 53 10-64 21-79 (114)
273 PF05496 RuvB_N: Holliday junc 30.5 1.5E+02 0.0032 22.6 4.9 58 5-63 51-109 (233)
274 cd02978 KaiB_like KaiB-like fa 29.6 1.4E+02 0.0029 18.2 4.2 53 6-60 3-60 (72)
275 cd03017 PRX_BCP Peroxiredoxin 28.4 70 0.0015 21.3 2.9 50 13-64 34-90 (140)
276 cd00449 PLPDE_IV PyridoxaL 5'- 27.8 89 0.0019 23.6 3.6 55 24-79 196-255 (256)
277 cd03011 TlpA_like_ScsD_MtbDsbE 27.3 1.8E+02 0.0038 18.8 4.6 31 7-37 24-54 (123)
278 KOG0190 Protein disulfide isom 27.0 3.2E+02 0.0069 23.5 6.8 75 7-83 46-135 (493)
279 PF12062 HSNSD: heparan sulfat 27.0 1.5E+02 0.0032 25.2 4.8 43 8-63 64-106 (487)
280 cd01557 BCAT_beta_family BCAT_ 26.9 64 0.0014 25.0 2.7 56 24-80 211-273 (279)
281 PF04827 Plant_tran: Plant tra 26.7 98 0.0021 22.9 3.3 46 110-158 149-194 (205)
282 PTZ00062 glutaredoxin; Provisi 26.4 2.7E+02 0.0059 20.6 7.8 62 10-81 24-95 (204)
283 PRK13728 conjugal transfer pro 26.3 1.3E+02 0.0029 21.8 4.0 16 7-22 73-88 (181)
284 PRK05057 aroK shikimate kinase 26.1 1.2E+02 0.0026 21.5 3.8 33 1-33 1-33 (172)
285 PRK06092 4-amino-4-deoxychoris 26.0 1.3E+02 0.0027 23.1 4.1 55 24-80 208-265 (268)
286 PRK06606 branched-chain amino 25.9 94 0.002 24.4 3.5 56 24-80 228-288 (306)
287 KOG0912 Thiol-disulfide isomer 25.6 67 0.0015 25.6 2.5 71 10-81 20-107 (375)
288 TIGR01162 purE phosphoribosyla 25.5 1.2E+02 0.0026 21.5 3.5 31 14-44 10-40 (156)
289 TIGR01764 excise DNA binding d 25.5 1.1E+02 0.0024 15.8 3.2 24 54-77 25-48 (49)
290 PRK13356 aminotransferase; Pro 25.0 1E+02 0.0022 23.9 3.5 55 24-80 221-278 (286)
291 PF07511 DUF1525: Protein of u 24.8 92 0.002 20.8 2.7 25 54-78 82-107 (114)
292 cd03012 TlpA_like_DipZ_like Tl 24.6 97 0.0021 20.4 2.9 53 9-63 29-94 (126)
293 PRK13949 shikimate kinase; Pro 23.5 1.3E+02 0.0027 21.4 3.5 31 4-34 1-31 (169)
294 cd03008 TryX_like_RdCVF Trypar 23.5 2.5E+02 0.0055 19.5 4.9 32 10-41 32-75 (146)
295 PF04564 U-box: U-box domain; 22.6 1.8E+02 0.004 17.3 4.7 24 54-78 14-37 (73)
296 TIGR01122 ilvE_I branched-chai 22.4 1.2E+02 0.0027 23.6 3.5 56 24-80 220-280 (298)
297 PF03227 GILT: Gamma interfero 22.1 60 0.0013 21.2 1.5 15 6-20 2-16 (108)
298 PRK00131 aroK shikimate kinase 21.9 1.7E+02 0.0036 20.2 3.9 34 1-34 1-34 (175)
299 PRK13947 shikimate kinase; Pro 21.2 1.5E+02 0.0033 20.6 3.5 30 5-34 2-31 (171)
300 TIGR01121 D_amino_aminoT D-ami 21.0 1.4E+02 0.0031 23.0 3.6 56 24-80 211-271 (276)
301 PRK09301 circadian clock prote 20.6 2.6E+02 0.0057 18.3 4.6 58 1-60 1-65 (103)
302 PRK00293 dipZ thiol:disulfide 20.1 5.9E+02 0.013 22.2 7.5 50 9-60 480-539 (571)
No 1
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=4.4e-37 Score=228.89 Aligned_cols=176 Identities=21% Similarity=0.333 Sum_probs=150.6
Q ss_pred CceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCCC
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHNP 84 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~ 84 (194)
+.++||+++.||+|++++++|+++|++|+.+.|+...++++++++||. |+||+|+++|.+|+||.||++||+++++.+.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~ 87 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPP 87 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCC
Confidence 359999999999999999999999999999999998888899999999 9999999999999999999999999998776
Q ss_pred CCCCCCHHHHHHHHHHHHHH-----------h-cccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHH
Q 040484 85 SILPQDPAERAMAQVLRNVI-----------F-SRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVL 152 (194)
Q Consensus 85 ~l~p~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l 152 (194)
|+|.++.+++.+++|+..+ . ..+...+.....+.+.++.+|+. |++++|++|+ ++|+||+++
T Consensus 88 -l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~----L~~~~~l~G~-~~t~AD~~l 161 (211)
T PRK09481 88 -LMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPV----FGEKPYFMSE-EFSLVDCYL 161 (211)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH----hccCCcccCC-CccHHHHHH
Confidence 9999999999999987211 1 12234456677888899999999 7788999999 999999999
Q ss_pred hhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 153 GWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
++.+.++.. .+.+ . ....+|+|++|++++.++|+|
T Consensus 162 ~~~~~~~~~----~~~~--~-~~~~~p~l~~w~~~~~~rp~~ 196 (211)
T PRK09481 162 APLLWRLPV----LGIE--L-SGPGAKELKGYMTRVFERDSF 196 (211)
T ss_pred HHHHHHHHh----cCCC--C-CCCCChhHHHHHHHHhccHHH
Confidence 999877643 2322 1 125799999999999999974
No 2
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-36 Score=220.34 Aligned_cols=183 Identities=45% Similarity=0.693 Sum_probs=158.6
Q ss_pred CceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCCC
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHNP 84 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~ 84 (194)
+.++||++..|||++|++++|+++||+|+.+..|..++++++++.||.+++||+|++||+.|+||..|++||++.+++.+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 56999999999999999999999999999999999999999999996669999999999999999999999999999533
Q ss_pred CCCCCCHHHHHHHHHHHHHH------------h-cccHHHHHHHHHHHHHHHHHHHHHHhhhC-CccceecCCCCcchhh
Q 040484 85 SILPQDPAERAMAQVLRNVI------------F-SRGERQERQVKQIKDAMEVIEKVLMLELK-GKKFFGGDADVGLIDI 150 (194)
Q Consensus 85 ~l~p~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~l~~le~~l~~~l~-~~~fl~G~~~~t~aD~ 150 (194)
+++|.|+.+|++.+.|+..+ . ..++.++...+.+...|..||+. |. +++|+.|+ +++++|+
T Consensus 88 ~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~e----l~k~k~~fgG~-~~G~vDi 162 (231)
T KOG0406|consen 88 PILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEE----LGKGKDFFGGE-TIGFVDI 162 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH----HhcCCCCCCCC-CcCHhhh
Confidence 39999999999999999211 1 24467788889999999999999 55 88999999 9999999
Q ss_pred HHhhHHHHHHHHhhhhh-ccccccCCcccchHHHHHHHhccCCCC
Q 040484 151 VLGWLPIWLDAIGEAAA-RTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 151 ~l~~~l~~~~~~~~~~~-~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
++++.+.++..+...++ .+ .+....+|+|.+|.++|.++|+|
T Consensus 163 ~~~p~~~~~~~~~~~~~~~~--~~~~~~~P~L~~W~~~~~~~~~V 205 (231)
T KOG0406|consen 163 AIGPSFERWLAVLEKFGGVK--FIIEEETPKLIKWIKRMKEDEAV 205 (231)
T ss_pred hHHhhHHHHHHHHHHhcCcc--cCCCCCCccHHHHHHHHhcChhH
Confidence 99977777665444433 22 34478999999999999999875
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=1.4e-33 Score=210.46 Aligned_cols=177 Identities=19% Similarity=0.248 Sum_probs=145.9
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCC
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKH 82 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~ 82 (194)
-||||+++.||+++|++++|+++|++|+.+.++.. ..+++++++||. |+||+|+++|.+|+||.+|++||++.+++
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~ 80 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYAD 80 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCC
Confidence 47999999999999999999999999999999875 467889999999 99999999999999999999999999974
Q ss_pred C-CCCCCCCHHHHHHHHHHHH-----------------HHh---c---ccHHHHHHHHHHHHHHHHHHHHHHhhhCCccc
Q 040484 83 N-PSILPQDPAERAMAQVLRN-----------------VIF---S---RGERQERQVKQIKDAMEVIEKVLMLELKGKKF 138 (194)
Q Consensus 83 ~-~~l~p~~~~~~~~~~~~~~-----------------~~~---~---~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~f 138 (194)
. ..|+|.++.+++.+++|+. .+. . .....+....++.+.++.||+. |++++|
T Consensus 81 ~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~----L~~~~~ 156 (214)
T PLN02473 81 QGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENR----LATNRY 156 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHH----hccCCc
Confidence 3 2399999999999999871 010 0 0122344567888899999999 777899
Q ss_pred eecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 139 FGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 139 l~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
++|+ ++|+||+++++.+.+........+ . .+.+|+|.+|++++.++|+|
T Consensus 157 l~Gd-~~t~ADi~~~~~~~~~~~~~~~~~----~--~~~~P~l~~w~~~~~~~p~~ 205 (214)
T PLN02473 157 LGGD-EFTLADLTHMPGMRYIMNETSLSG----L--VTSRENLNRWWNEISARPAW 205 (214)
T ss_pred ccCC-CCCHHHHHHHHHHHHHHhccccHH----H--HhcCHHHHHHHHHHhcChhh
Confidence 9999 999999999998887643211111 1 46899999999999999975
No 4
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-33 Score=193.19 Aligned_cols=178 Identities=29% Similarity=0.424 Sum_probs=153.2
Q ss_pred CCCceEEeecCCCchHHHHHHHHHHhCCcceEEEccCC----CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHh
Q 040484 3 EQAEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT----NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDD 78 (194)
Q Consensus 3 ~~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~ 78 (194)
.+.+.+||++..|..++|||++|..+||+|+.+.|++. ....+|+++||. ++||+|++||.+++||.||++||++
T Consensus 2 ~~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 2 SAAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEE 80 (217)
T ss_pred CcccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHh
Confidence 35689999999999999999999999999999999885 345699999999 9999999999999999999999999
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHH-------------HHHh--c---ccHHHHHHHHHHHHHHHHHHHHHHhhhCCcccee
Q 040484 79 TWKHNPSILPQDPAERAMAQVLR-------------NVIF--S---RGERQERQVKQIKDAMEVIEKVLMLELKGKKFFG 140 (194)
Q Consensus 79 ~~~~~~~l~p~~~~~~~~~~~~~-------------~~~~--~---~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~ 140 (194)
++++++ |+|+++..|+.+++.. .++. . .+.....+..-+.+.|..||+.|. ...|+|.+
T Consensus 81 t~P~pp-LLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~--~~aGkycv 157 (217)
T KOG0868|consen 81 TYPDPP-LLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLK--SHAGKYCV 157 (217)
T ss_pred cCCCCC-CCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHH--HccCCccc
Confidence 999999 9999999999998876 1221 1 222356667778899999999976 46899999
Q ss_pred cCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 141 GDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 141 G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
|| ++|+||+++.+.+... ..+..+ ...||-+.+..+++.+.|+|
T Consensus 158 GD-evtiADl~L~pqv~nA----~rf~vd-----l~PYPti~ri~e~l~elpaF 201 (217)
T KOG0868|consen 158 GD-EVTIADLCLPPQVYNA----NRFHVD-----LTPYPTITRINEELAELPAF 201 (217)
T ss_pred Cc-eeehhhhccchhhhhh----hhcccc-----CCcCchHHHHHHHHHhCHHH
Confidence 99 9999999999988775 344544 89999999999999988865
No 5
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=1e-31 Score=201.17 Aligned_cols=176 Identities=20% Similarity=0.183 Sum_probs=142.9
Q ss_pred cCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCC---CCCCCC
Q 040484 12 RWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKH---NPSILP 88 (194)
Q Consensus 12 ~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~---~~~l~p 88 (194)
.+.||+|++++++|.++|++|+.+.||+..++++|+++||. |+||+|+++|.+|+||.+|++||++++++ ++ +.|
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~-l~p 93 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPK-LSP 93 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCC-CCC
Confidence 47899999999999999999999999999888999999999 99999999999999999999999999975 33 778
Q ss_pred CCHHHHHHHHHHHHH----Hhc-ccHHHHHHHHHHHHHHHHHHHHHHh--------------hhCCccceecCCCCcchh
Q 040484 89 QDPAERAMAQVLRNV----IFS-RGERQERQVKQIKDAMEVIEKVLML--------------ELKGKKFFGGDADVGLID 149 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~l~~le~~l~~--------------~l~~~~fl~G~~~~t~aD 149 (194)
.++..++....+... +.. .+...+...+.+.+.++.||+.|.+ .+++++|+.|+ ++|+||
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd-~~tlaD 172 (236)
T TIGR00862 94 KHPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGD-ELTLAD 172 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCC-ccchhh
Confidence 787777664444422 222 2333455566799999999999531 01268999999 999999
Q ss_pred hHHhhHHHHHHHHh-hhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 150 IVLGWLPIWLDAIG-EAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 150 ~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
+++++.+.++.... ...+++ + .+++|+|++|++++.++|+|
T Consensus 173 ~~l~p~l~~l~~~~~~~~~~~--i--~~~~p~l~~w~~~~~~~~sf 214 (236)
T TIGR00862 173 CNLLPKLHIVKVVAKKYRNFD--I--PAEFTGVWRYLSNAYAREEF 214 (236)
T ss_pred HHHHHHHHHHHHHHHHHhCcC--c--cccCchHHHHHHHHhccchH
Confidence 99999999997643 222443 2 58899999999999999985
No 6
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=3.5e-32 Score=201.24 Aligned_cols=174 Identities=22% Similarity=0.303 Sum_probs=143.2
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEE-eCCeeeechHHHHHHHHhhcCCCCC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF-HNEKCFSESLVIIEYIDDTWKHNPS 85 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~~~~~ 85 (194)
++||+++.||++++++++|+++|++|+.+.++...+.+++.+.||. |+||+|+ ++|.+++||.+|++||++.+++++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~- 78 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPA- 78 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCC-
Confidence 5899999999999999999999999999999887767788889999 9999998 688999999999999999987666
Q ss_pred CCCCCHHHHHHHHHHHHH-----------Hh----c----ccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCc
Q 040484 86 ILPQDPAERAMAQVLRNV-----------IF----S----RGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVG 146 (194)
Q Consensus 86 l~p~~~~~~~~~~~~~~~-----------~~----~----~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t 146 (194)
|+|.++.+++.+++|... +. . .....+....++.+.|+.||++ |++++ ++|+ ++|
T Consensus 79 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~----L~~~~-l~Gd-~~t 152 (202)
T PRK10357 79 MLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGY----LVDGT-LKTD-TVN 152 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHh----hccCc-ccCC-CcC
Confidence 999999999988887510 00 0 1112245567889999999999 66677 9999 999
Q ss_pred chhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 147 LIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 147 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
+||+++++.+.+...... +.. ....+|+|.+|++++.++|+|
T Consensus 153 ~ADi~l~~~l~~~~~~~~--~~~----~~~~~p~l~~~~~~i~~rp~~ 194 (202)
T PRK10357 153 LATIAIACAVGYLNFRRV--APG----WCVDRPHLVKLVENLFQRESF 194 (202)
T ss_pred HHHHHHHHHHHHHHhccc--Ccc----hhhcChHHHHHHHHHhcChhh
Confidence 999999999988754211 111 135799999999999999975
No 7
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=5.3e-32 Score=201.37 Aligned_cols=173 Identities=29% Similarity=0.401 Sum_probs=142.1
Q ss_pred EEeecCCCchHHHHHHHHHHhCCcceEEEccCC----CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCC
Q 040484 8 KLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT----NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHN 83 (194)
Q Consensus 8 ~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~ 83 (194)
+||+++.||+++++|++|.++|++|+.+.++.. ...++++++||. |+||+|+++|.+++||.+|++||++.+++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999863 246789999999 999999999999999999999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHHH----------------hc----ccH-HHHHHHHHHHHHHHHHHHHHHhhhCCccceecC
Q 040484 84 PSILPQDPAERAMAQVLRNVI----------------FS----RGE-RQERQVKQIKDAMEVIEKVLMLELKGKKFFGGD 142 (194)
Q Consensus 84 ~~l~p~~~~~~~~~~~~~~~~----------------~~----~~~-~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~ 142 (194)
. +.|.++.+++.+++|+..+ .. .++ ..+...+.+.+.|+.||++|+ -++++|++|+
T Consensus 80 ~-l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~~~l~G~ 156 (210)
T TIGR01262 80 P-LLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQ--PHAGAFCVGD 156 (210)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCEeeCC
Confidence 6 9999999999999997111 00 111 123344568899999999953 1236799999
Q ss_pred CCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 143 ADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 143 ~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
++|+||+++++.+.+... .+.+ .+.||+|++|+++|.++|+|
T Consensus 157 -~~T~ADi~~~~~l~~~~~----~~~~-----~~~~p~l~~~~~~~~~rp~~ 198 (210)
T TIGR01262 157 -TPTLADLCLVPQVYNAER----FGVD-----LTPYPTLRRIAAALAALPAF 198 (210)
T ss_pred -CCCHHHHHHHHHHHHHHH----cCCC-----cccchHHHHHHHHHhcCHHH
Confidence 999999999999887641 2322 57899999999999999874
No 8
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-32 Score=200.86 Aligned_cols=171 Identities=26% Similarity=0.397 Sum_probs=146.0
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC--CCchhhhhhCCCCCcccEEEeCCe-eeechHHHHHHHHhhcCCC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT--NKSSLLLNSNPIYKRIPVLFHNEK-CFSESLVIIEYIDDTWKHN 83 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~L~~~~~-~i~eS~~I~~yL~~~~~~~ 83 (194)
++||+.+.||+|+++++++.++|++|+.+.|+.. ...++++++||. |+||+|++++. +|+||.+|++||+++++++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 5899999999999999999999999999999997 478899999999 99999997665 8999999999999999988
Q ss_pred CCCCCCCHH---HHHHHHHHHHHH--------h----c--------ccHHHHHHHHHHHHHHHHHHHHHHhhhCCcccee
Q 040484 84 PSILPQDPA---ERAMAQVLRNVI--------F----S--------RGERQERQVKQIKDAMEVIEKVLMLELKGKKFFG 140 (194)
Q Consensus 84 ~~l~p~~~~---~~~~~~~~~~~~--------~----~--------~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~ 140 (194)
+ ++|.++. +++.+..|+... . . .....+.....+...+..+|.. |++++|++
T Consensus 80 ~-l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~----L~~~~~l~ 154 (211)
T COG0625 80 P-LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEAL----LADGPYLA 154 (211)
T ss_pred C-cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHH----hccCCccc
Confidence 8 9998875 778888887111 0 1 1334566778889999999999 78899999
Q ss_pred cCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCC
Q 040484 141 GDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPF 193 (194)
Q Consensus 141 G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 193 (194)
|+ ++|+||+.+++.+.++.. .+.+ .+.+|++.+|++++.++|+
T Consensus 155 G~-~~tiAD~~~~~~~~~~~~----~~~~-----~~~~p~l~~w~~r~~~rp~ 197 (211)
T COG0625 155 GD-RFTIADIALAPLLWRLAL----LGEE-----LADYPALKAWYERVLARPA 197 (211)
T ss_pred CC-CCCHHHHHHHHHHHHhhh----cCcc-----cccChHHHHHHHHHHcCCc
Confidence 99 999999999999998532 2222 4689999999999999987
No 9
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=5.1e-32 Score=202.24 Aligned_cols=169 Identities=17% Similarity=0.169 Sum_probs=138.0
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC---CchhhhhhCCCCCcccEEEe-----CC--eeeechHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN---KSSLLLNSNPIYKRIPVLFH-----NE--KCFSESLVIIEYI 76 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~-----~~--~~i~eS~~I~~yL 76 (194)
+|||+.+ +|+|++|+++|+++|++|+.+.|+... +.++++++||. |+||+|++ || .+|+||.||++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999988 799999999999999999999998753 36799999999 99999996 45 4799999999999
Q ss_pred HhhcCCCCCCCCCCHHHHHHHHHHHHHH--------------hc-----ccHHHHHHHHHHHHHHHHHHHHHHhhhCCcc
Q 040484 77 DDTWKHNPSILPQDPAERAMAQVLRNVI--------------FS-----RGERQERQVKQIKDAMEVIEKVLMLELKGKK 137 (194)
Q Consensus 77 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~--------------~~-----~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~ 137 (194)
++.++ . +.|.++.+++.+++|+... .. .....+.....+.+.+..||++ |++++
T Consensus 80 ~~~~~--~-l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~----L~~~~ 152 (215)
T PRK13972 80 AEKTG--L-FLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKR----LENSP 152 (215)
T ss_pred HHhcC--C-CCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHH----hccCc
Confidence 99975 3 7788999999999998211 00 1123345567788899999999 77889
Q ss_pred ceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 138 FFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 138 fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
|++|+ ++|+||+++++.+..... .+.+ .+.+|+|.+|++++.++|+|
T Consensus 153 ~l~Gd-~~t~ADi~l~~~~~~~~~----~~~~-----~~~~P~l~~w~~r~~~rp~~ 199 (215)
T PRK13972 153 WLGGE-NYSIADIACWPWVNAWTR----QRID-----LAMYPAVKNWHERIRSRPAT 199 (215)
T ss_pred cccCC-CCCHHHHHHHHHHHHHhh----cCCc-----chhCHHHHHHHHHHHhCHHH
Confidence 99999 999999999887654321 1222 57899999999999999974
No 10
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=1.3e-31 Score=199.82 Aligned_cols=173 Identities=20% Similarity=0.221 Sum_probs=141.4
Q ss_pred CCceEEeecC--CCchHHHHHHHHHHhCCcceEEEccCCC---CchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHh
Q 040484 4 QAEVKLLGRW--FSVFSVRVEWALKLKGIKYVKIEEDTTN---KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDD 78 (194)
Q Consensus 4 ~~~~~Ly~~~--~~p~~~~~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~ 78 (194)
-++++||+.+ .||+|++++++|+++||+|+.+.++... ..++++++||. |+||+|++||.+|+||.+|++||++
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL~~ 81 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYLEE 81 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHHHH
Confidence 3568999976 7999999999999999999999999753 56899999999 9999999999999999999999999
Q ss_pred hcCCCC--CCCCCCHHHHHHHHHHHHHHh-----------------c--ccHHHHHHHHHHHHHHHHHHHHHHhhhC-Cc
Q 040484 79 TWKHNP--SILPQDPAERAMAQVLRNVIF-----------------S--RGERQERQVKQIKDAMEVIEKVLMLELK-GK 136 (194)
Q Consensus 79 ~~~~~~--~l~p~~~~~~~~~~~~~~~~~-----------------~--~~~~~~~~~~~~~~~l~~le~~l~~~l~-~~ 136 (194)
+++++. +++|.++.+++++++|+.... . .....+...+++.+.++.+|++ |+ ++
T Consensus 82 ~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~----L~~~~ 157 (214)
T PRK15113 82 RFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERL----LAPGQ 157 (214)
T ss_pred HcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHH----HhcCC
Confidence 998542 388999999999999872110 0 1112355667788999999999 54 45
Q ss_pred cceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 137 KFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 137 ~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
+|++|+ +|+||+++++.+.++.. .+.+ . .|+|.+|++++.++|+|
T Consensus 158 ~~l~G~--~TlADi~l~~~l~~~~~----~~~~-----~--~p~l~~~~~r~~~rp~~ 202 (214)
T PRK15113 158 PNLFGE--WCIADTDLALMLNRLVL----HGDE-----V--PERLADYATFQWQRASV 202 (214)
T ss_pred CEeeCC--ccHHHHHHHHHHHHHHH----cCCC-----C--CHHHHHHHHHHhcCHHH
Confidence 788885 99999999999887642 2322 2 29999999999999975
No 11
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=7.9e-32 Score=201.15 Aligned_cols=176 Identities=20% Similarity=0.291 Sum_probs=142.2
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCC
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKH 82 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~ 82 (194)
.+|||+.+.| +++|++++|.++|++|+.+.|+.. .++++++++||. |+||+|+++|.+|+||.+|++||+++++.
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~~~~ 79 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEKYRS 79 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHHcCC
Confidence 3899997765 799999999999999999999875 457899999999 99999999999999999999999999975
Q ss_pred C-CCCCCCCHHHHHHHHHHHHH-----------------Hh------cccHHHHHHHHHHHHHHHHHHHHHHhhhCCccc
Q 040484 83 N-PSILPQDPAERAMAQVLRNV-----------------IF------SRGERQERQVKQIKDAMEVIEKVLMLELKGKKF 138 (194)
Q Consensus 83 ~-~~l~p~~~~~~~~~~~~~~~-----------------~~------~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~f 138 (194)
. ..|+|.++.+++.+++|+.. +. ..+.......+.+.+.++.||+. |++++|
T Consensus 80 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~----L~~~~~ 155 (215)
T PLN02395 80 QGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEAR----LSKSKY 155 (215)
T ss_pred CCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHH----hcCCcc
Confidence 3 23999999999999998721 00 01112345567788899999999 778899
Q ss_pred eecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 139 FGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 139 l~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
++|+ ++|+||+++++.+.++...... . .....+|+|.+|++++.++|++
T Consensus 156 l~G~-~~s~ADi~l~~~~~~~~~~~~~-~-----~~~~~~p~L~~w~~~~~~rp~~ 204 (215)
T PLN02395 156 LAGD-FVSLADLAHLPFTEYLVGPIGK-A-----YLIKDRKHVSAWWDDISSRPAW 204 (215)
T ss_pred ccCC-CcCHHHHHHHHHHHHHhcccch-h-----hhhccCchHHHHHHHHHcChHH
Confidence 9999 9999999999888776321111 1 1156799999999999999964
No 12
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=1.7e-31 Score=199.01 Aligned_cols=173 Identities=18% Similarity=0.249 Sum_probs=136.6
Q ss_pred ecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCCCCCCCCC
Q 040484 11 GRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHNPSILPQD 90 (194)
Q Consensus 11 ~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~~l~p~~ 90 (194)
....||||+|++++|+++|++|+.+.|++..++++++++||. |+||+|++||.+|+||.+|++||+++++++. + .+
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~-l--~~ 91 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPP-L--KT 91 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCC-C--CC
Confidence 345599999999999999999999999998888899999999 9999999999999999999999999998655 5 35
Q ss_pred HHHHHHHHHHHH-H---HhcccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhh
Q 040484 91 PAERAMAQVLRN-V---IFSRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAA 166 (194)
Q Consensus 91 ~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~ 166 (194)
+.+++.+..++. . +.......+.....+.+.|+.+|+.|+ .++++|++|+ ++|+||+++++.+.++......+
T Consensus 92 ~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~~fl~Gd-~~T~ADi~l~~~~~~l~~~~~~~ 168 (213)
T PLN02378 92 PAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLK--SHDGPFIAGE-RVSAVDLSLAPKLYHLQVALGHF 168 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHh--cCCCCCcCCC-CCchhhHHHHHHHHHHHHHHHHh
Confidence 677777766651 1 111111223344677888999999943 1267999999 99999999999998876432211
Q ss_pred -hccccccCCcccchHHHHHHHhccCCCC
Q 040484 167 -ARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 167 -~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
+.+ . .+.+|+|++|++++.++|++
T Consensus 169 ~~~~--~--~~~~p~l~~w~~~~~~rpa~ 193 (213)
T PLN02378 169 KSWS--V--PESFPHVHNYMKTLFSLDSF 193 (213)
T ss_pred cCCC--c--hhHhHHHHHHHHHHhcCCCe
Confidence 111 1 36799999999999999985
No 13
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=6.6e-32 Score=199.58 Aligned_cols=171 Identities=18% Similarity=0.274 Sum_probs=140.8
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC----CchhhhhhCCCCCcccEEE-eCCeeeechHHHHHHHHhhcC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN----KSSLLLNSNPIYKRIPVLF-HNEKCFSESLVIIEYIDDTWK 81 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~ 81 (194)
|+||+.+.+ ++++++++|+++|++|+.+.|+... ..++++++||. |+||+|+ +||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589999876 7999999999999999999998853 35789999999 9999998 688999999999999999998
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHH--------Hh----cc--cHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCc
Q 040484 82 HNPSIL-PQDPAERAMAQVLRNV--------IF----SR--GERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVG 146 (194)
Q Consensus 82 ~~~~l~-p~~~~~~~~~~~~~~~--------~~----~~--~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t 146 (194)
+++ ++ |.++.+++.+++|+.. +. .. +.........+.+.++.+|+. |++++|++|+ ++|
T Consensus 79 ~~~-l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~----L~~~~~l~G~-~~s 152 (201)
T PRK10542 79 DRQ-LLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEA----LADEQWICGQ-RFT 152 (201)
T ss_pred ccc-cCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHH----hcCCCeeeCC-CCc
Confidence 766 55 6678899999888721 11 11 112245567788999999999 7788999999 999
Q ss_pred chhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 147 LIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 147 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
+||+++++.+.+... .+.+ ...+|+|.+|++++.++|+|
T Consensus 153 ~ADi~l~~~~~~~~~----~~~~-----~~~~p~l~~w~~~~~~~p~~ 191 (201)
T PRK10542 153 IADAYLFTVLRWAYA----VKLN-----LEGLEHIAAYMQRVAERPAV 191 (201)
T ss_pred HHhHHHHHHHHHhhc----cCCC-----cccchHHHHHHHHHHcCHHH
Confidence 999999998887632 2322 56899999999999999964
No 14
>PRK11752 putative S-transferase; Provisional
Probab=99.97 E-value=1.1e-30 Score=200.33 Aligned_cols=178 Identities=21% Similarity=0.235 Sum_probs=140.6
Q ss_pred CceEEeecCCCchHHHHHHHHHHh------CCcceEEEccCC---CCchhhhhhCCCCCcccEEEeC----CeeeechHH
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLK------GIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHN----EKCFSESLV 71 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~----~~~i~eS~~ 71 (194)
.+|+||+.+ ||+|++|+++|+++ |++|+.+.|+.. ...++++++||. |+||+|+++ |.+|+||.+
T Consensus 43 ~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~A 120 (264)
T PRK11752 43 HPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGA 120 (264)
T ss_pred CCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHH
Confidence 479999976 99999999999997 899999999875 346799999999 999999964 368999999
Q ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHH--------------h--cc---cHHHHHHHHHHHHHHHHHHHHHHhh
Q 040484 72 IIEYIDDTWKHNPSILPQDPAERAMAQVLRNVI--------------F--SR---GERQERQVKQIKDAMEVIEKVLMLE 132 (194)
Q Consensus 72 I~~yL~~~~~~~~~l~p~~~~~~~~~~~~~~~~--------------~--~~---~~~~~~~~~~~~~~l~~le~~l~~~ 132 (194)
|++||++.++ + |+|.++.+++.+++|+... . .. ....+....++.+.|+.||++
T Consensus 121 Il~YL~~~~~--~-L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~---- 193 (264)
T PRK11752 121 ILLYLAEKFG--A-FLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQ---- 193 (264)
T ss_pred HHHHHHHhcC--C-cCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH----
Confidence 9999999986 3 9999999999999997211 0 01 112244456678889999999
Q ss_pred hCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 133 LKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 133 l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
|++++|++|+ ++|+||+++++.+.++.... .++.. +....+.+|+|.+|++++.++|+|
T Consensus 194 L~~~~fl~Gd-~~TlADi~l~~~l~~l~~~~-~~~~~-~~~~~~~~P~L~~w~~rv~~rPs~ 252 (264)
T PRK11752 194 LAEHEYIAGD-EYTIADIAIWPWYGNLVLGN-LYDAA-EFLDVGSYKHVQRWAKEIAERPAV 252 (264)
T ss_pred hccCCCCCCC-ccCHHHHHHHHHHHHHhhcc-ccccc-cccCcccCHHHHHHHHHHHhCHHH
Confidence 7788999999 99999999998887764310 00100 011257899999999999999974
No 15
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=6e-30 Score=195.46 Aligned_cols=170 Identities=19% Similarity=0.265 Sum_probs=136.6
Q ss_pred CCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCCCCCCCCCHH
Q 040484 13 WFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHNPSILPQDPA 92 (194)
Q Consensus 13 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~~l~p~~~~ 92 (194)
..||+|++++++|+++|++|+.+.|+...++++++++||. |+||+|+++|.+|+||.+|++||+++++++. +. ++.
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~-L~--~~~ 146 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPP-LA--TPP 146 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCC-CC--CHH
Confidence 3499999999999999999999999998888999999999 9999999989999999999999999999765 63 577
Q ss_pred HHHHHHHHH-HHH---hcccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhh-h
Q 040484 93 ERAMAQVLR-NVI---FSRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAA-A 167 (194)
Q Consensus 93 ~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~-~ 167 (194)
+++.+.+|+ ..+ .......+...+.+.+.++.||+.|+ ++++|++|+ ++|+||+++++.+.++......+ +
T Consensus 147 era~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~---~~g~yl~Gd-~~SlADi~l~p~L~~l~~~~~~~~~ 222 (265)
T PLN02817 147 EKASVGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIK---ENGPFINGE-KISAADLSLGPKLYHLEIALGHYKN 222 (265)
T ss_pred HHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHh---cCCCeeCCC-CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888877 111 11111122334567888999999942 257999999 99999999999998876432211 2
Q ss_pred ccccccCCcccchHHHHHHHhccCCCC
Q 040484 168 RTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 168 ~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
++ + .+.+|+|.+|++++.++|+|
T Consensus 223 ~~--i--~~~~P~L~~w~~ri~~rps~ 245 (265)
T PLN02817 223 WS--V--PDSLPFVKSYMKNIFSMESF 245 (265)
T ss_pred CC--c--cccCHHHHHHHHHHhcchhH
Confidence 22 1 46899999999999999975
No 16
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.97 E-value=4.4e-29 Score=185.04 Aligned_cols=174 Identities=16% Similarity=0.228 Sum_probs=130.9
Q ss_pred CCCCCceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhh--------hhCCCCCcccEEEeCCeeeechHHH
Q 040484 1 MEEQAEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLL--------NSNPIYKRIPVLFHNEKCFSESLVI 72 (194)
Q Consensus 1 m~~~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~vP~L~~~~~~i~eS~~I 72 (194)
|++ +++||+++.+++++++|++|+++|++|+.+.++.. . +++. ..||. |+||+|++||.+++||.||
T Consensus 1 m~~--~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~-~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI 75 (205)
T PTZ00057 1 MAE--EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGEN-G-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAI 75 (205)
T ss_pred CCC--ceEEEecCCCcchHHHHHHHHHcCCCeEEEecccc-c-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHH
Confidence 663 49999999999999999999999999999977532 1 2332 47999 9999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHH-H---H---Hhc----ccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceec
Q 040484 73 IEYIDDTWKHNPSILPQDPAERAMAQVLR-N---V---IFS----RGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGG 141 (194)
Q Consensus 73 ~~yL~~~~~~~~~l~p~~~~~~~~~~~~~-~---~---~~~----~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G 141 (194)
++||+++++ +.+.+..++..+.... . . +.. .+...+.....+.+.++.||+.|.+ ++++|++|
T Consensus 76 ~~YLa~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~~~l~G 149 (205)
T PTZ00057 76 VRYLSKKYK----ICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKK--NHCNYFVG 149 (205)
T ss_pred HHHHHHHcC----CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCeeeC
Confidence 999999997 4455554444333222 1 0 000 1122234457788899999999531 24589999
Q ss_pred CCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 142 DADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 142 ~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
+ ++|+||+++++.+.++... .+.+ .+.+|+|.+|++++.++|+|
T Consensus 150 d-~~T~AD~~l~~~~~~~~~~---~~~~-----l~~~P~l~~~~~r~~~~P~~ 193 (205)
T PTZ00057 150 D-NLTYADLAVFNLYDDIETK---YPNS-----LKNFPLLKAHNEFISNLPNI 193 (205)
T ss_pred C-cccHHHHHHHHHHHHHHHh---Chhh-----hccChhHHHHHHHHHhChHH
Confidence 9 9999999999988876521 1322 67899999999999999975
No 17
>PRK10387 glutaredoxin 2; Provisional
Probab=99.96 E-value=3.5e-29 Score=186.19 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=128.6
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEE-eCCeeeechHHHHHHHHhhcCCCCC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF-HNEKCFSESLVIIEYIDDTWKHNPS 85 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~~~~~ 85 (194)
||||+++.||+|++++++|+++|++|+.+.++..... .-.+.||. ++||+|+ ++|..++||.+|++||+++++++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~- 77 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TPIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPL- 77 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hHHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCcc-
Confidence 5899999999999999999999999999988654322 22578998 8999995 889999999999999999998644
Q ss_pred CCCCCHHHHHHHHHHHH--------H----Hhcc-------cHH---------------------HHHHHHHHHHHHHHH
Q 040484 86 ILPQDPAERAMAQVLRN--------V----IFSR-------GER---------------------QERQVKQIKDAMEVI 125 (194)
Q Consensus 86 l~p~~~~~~~~~~~~~~--------~----~~~~-------~~~---------------------~~~~~~~~~~~l~~l 125 (194)
+.+ .+++.+++|+. . +... ... .+.....+.+.|+.+
T Consensus 78 l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (210)
T PRK10387 78 LTG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRAL 154 (210)
T ss_pred CCC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHH
Confidence 532 24566777761 1 1000 000 034567788899999
Q ss_pred HHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 126 EKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 126 e~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
|++ |++ +|++|+ ++|+||+++++.+.++... .+ ...+|+|.+|++|+.++|++
T Consensus 155 e~~----L~~-~~l~G~-~~s~ADi~l~~~l~~~~~~---~~-------~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 155 DPL----IVK-PNAVNG-ELSTDDIHLFPILRNLTLV---KG-------IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHH----hcC-ccccCC-CCCHHHHHHHHHHhcceee---cC-------CCCCHHHHHHHHHHHHHhCC
Confidence 998 766 999999 9999999999999887531 12 23469999999999999875
No 18
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.9e-28 Score=182.61 Aligned_cols=176 Identities=24% Similarity=0.313 Sum_probs=150.5
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcC-
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWK- 81 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~- 81 (194)
+++||+.+.+|.|+++.++++++|++|+.+.|+.. +.+++|+++||. ++||+|+|+|..++||.||+.||.+.|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 58999999999999999999999999999977764 789999999999 8999999999999999999999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHH--------H-----------Hhc--ccHHHHHHHHHHHHHHHHHHHHHHhhhCCcccee
Q 040484 82 HNPSILPQDPAERAMAQVLRN--------V-----------IFS--RGERQERQVKQIKDAMEVIEKVLMLELKGKKFFG 140 (194)
Q Consensus 82 ~~~~l~p~~~~~~~~~~~~~~--------~-----------~~~--~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~ 140 (194)
....++|.+..+++.+++|+. . +.. .....++....+.+.+..+|.. +.++.|+.
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----l~~~~yl~ 156 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERF----LKTQVYLA 156 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHH----HccCCccc
Confidence 222389999999999999991 1 111 3445578899999999999999 77899999
Q ss_pred cCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCC
Q 040484 141 GDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPF 193 (194)
Q Consensus 141 G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 193 (194)
|+ ++|+||+.+++.+..+.. . ..+ .....++|++.+|++++.++|+
T Consensus 157 g~-~~tlADl~~~~~~~~~~~-~-~~~----~~~~~~~p~v~~W~~~~~~~P~ 202 (226)
T KOG0867|consen 157 GD-QLTLADLSLASTLSQFQG-K-FAT----EKDFEKYPKVARWYERIQKRPA 202 (226)
T ss_pred CC-cccHHHHHHhhHHHHHhH-h-hhh----hhhhhhChHHHHHHHHHHhCcc
Confidence 99 999999999999999842 1 111 1127899999999999999875
No 19
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.3e-27 Score=170.23 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=145.6
Q ss_pred CCceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCC
Q 040484 4 QAEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHN 83 (194)
Q Consensus 4 ~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~ 83 (194)
|..++|+|++..+++..+|+++.+.|++|+.+.++..+..+.++...|+ |++|+|..||..|.+|.||++||+++++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g-- 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG-- 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC--
Confidence 4579999999999999999999999999999999888766777777999 9999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHH--------HHHh----c--ccH---HHH-HHHHHHHHHHHHHHHHHHhhhCCccceecCCCC
Q 040484 84 PSILPQDPAERAMAQVLR--------NVIF----S--RGE---RQE-RQVKQIKDAMEVIEKVLMLELKGKKFFGGDADV 145 (194)
Q Consensus 84 ~~l~p~~~~~~~~~~~~~--------~~~~----~--~~~---~~~-~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~ 145 (194)
+.++++.+.+.++..+ ..+. . .+. ..+ ...+...+.+..+++.|+ .+++.|++|+ ++
T Consensus 78 --l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~--~~~sgflvGd-~l 152 (206)
T KOG1695|consen 78 --LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILK--KNKSGFLVGD-KL 152 (206)
T ss_pred --cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHH--hCCCCeeecC-cc
Confidence 9999999999999887 1111 0 111 111 456788889999999965 3466799999 99
Q ss_pred cchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 146 GLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 146 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
|+||+.++..+..+... +..+ ..+.+|+|.++.+++.++|.+
T Consensus 153 T~aDl~i~e~l~~l~~~---~~~~----~~~~~P~L~a~~~kv~~~p~i 194 (206)
T KOG1695|consen 153 TWADLVIAEHLDTLEEL---LDPS----ALDHFPKLKAFKERVSSIPNI 194 (206)
T ss_pred cHHHHHHHHHHHHHHHh---cCch----hhccChHHHHHHHHHhcCchH
Confidence 99999999999888652 1111 156789999999999999964
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.95 E-value=7.3e-27 Score=173.58 Aligned_cols=164 Identities=19% Similarity=0.198 Sum_probs=124.0
Q ss_pred EEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEE-eCCeeeechHHHHHHHHhhcCCCCCC
Q 040484 8 KLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF-HNEKCFSESLVIIEYIDDTWKHNPSI 86 (194)
Q Consensus 8 ~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~~~~~l 86 (194)
|||++..||+|+++|++|.++|++|+.+.++... .....+.||. |++|+|+ +||..++||.+|++||+++++.+. +
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~-~~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~-~ 77 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDD-EETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPL-L 77 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCc-chhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCcc-C
Confidence 6899999999999999999999999998775543 2234788999 8999998 889999999999999999997643 4
Q ss_pred CCCCHHHHHHHHHHH--------HHHh----c---c--------------cHH-----------HHHHHHHHHHHHHHHH
Q 040484 87 LPQDPAERAMAQVLR--------NVIF----S---R--------------GER-----------QERQVKQIKDAMEVIE 126 (194)
Q Consensus 87 ~p~~~~~~~~~~~~~--------~~~~----~---~--------------~~~-----------~~~~~~~~~~~l~~le 126 (194)
.|. .++.+++|+ ..+. . . ... .+.....+.+.|+.+|
T Consensus 78 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le 154 (209)
T TIGR02182 78 TGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELD 154 (209)
T ss_pred CCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHH
Confidence 332 234455555 1110 0 0 000 0345577888899999
Q ss_pred HHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccc-hHHHHHHHhccCCCC
Q 040484 127 KVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYT-CWDKWTKNFSELPFV 194 (194)
Q Consensus 127 ~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~ 194 (194)
++ |++++|+ |+ ++|+||+++++.+.++... + ...+| +|.+|++|+.+++++
T Consensus 155 ~~----L~~~~~l-~g-~~TiADi~l~~~l~~~~~~----~-------~~~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 155 KL----IDGPNAV-NG-ELSEDDILVFPLLRNLTLV----A-------GINWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HH----HhCcccc-CC-CCCHHHHHHHHHhcCeeee----c-------CCCCChHHHHHHHHHHHHhCC
Confidence 99 8899998 56 6999999999998886421 1 11256 999999999998865
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.91 E-value=4.7e-24 Score=156.29 Aligned_cols=183 Identities=16% Similarity=0.238 Sum_probs=137.4
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCC
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKH 82 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~ 82 (194)
.+.||.+|.|--+|+||+++.++||+|+...|++. ...++|..+||. |.||+|+++..+|+++..|++|+++++.+
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 48999999999999999999999999999999985 568899999998 99999999999999999999999999987
Q ss_pred CCCCCCC-CHHHHHHHH-----HHH-------------------------------------HHHh--------------
Q 040484 83 NPSILPQ-DPAERAMAQ-----VLR-------------------------------------NVIF-------------- 105 (194)
Q Consensus 83 ~~~l~p~-~~~~~~~~~-----~~~-------------------------------------~~~~-------------- 105 (194)
...|.|. +..+..++. .|. .++.
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 7667775 221112221 122 0000
Q ss_pred -------------cccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccc
Q 040484 106 -------------SRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQII 172 (194)
Q Consensus 106 -------------~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~ 172 (194)
......++....+...|...|..|........|++|+ ++|+||+++..+|.++... |+...-
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~-efslADVsLg~~LhRL~~L----g~e~~y 259 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGC-EFSLADVSLGATLHRLKFL----GLEKKY 259 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccc-cchHHHHHHHHHHHHHHHc----ccHHHh
Confidence 0111124555666667777777743212247899999 9999999999999998743 322111
Q ss_pred cCCcccchHHHHHHHhccCCCC
Q 040484 173 FDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 173 ~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
......|+|.+|++++.+|++|
T Consensus 260 w~~gsrpnle~Yf~rvrrR~sf 281 (325)
T KOG4420|consen 260 WEDGSRPNLESYFERVRRRFSF 281 (325)
T ss_pred cccCCCccHHHHHHHHHhhhHH
Confidence 1246899999999999999875
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.1e-23 Score=146.32 Aligned_cols=174 Identities=20% Similarity=0.201 Sum_probs=140.1
Q ss_pred CCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCCCCCCCC-CH
Q 040484 13 WFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHNPSILPQ-DP 91 (194)
Q Consensus 13 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~~l~p~-~~ 91 (194)
-.|||||++.|.|..+|++|+++.||+..++++|+++.|. +++|+|..|+..++||..|-+.|++.++.++ +.-- .+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~-~~~~~~~ 96 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPK-LPTLAPP 96 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCC-CcccCCH
Confidence 3699999999999999999999999999999999999998 9999999999999999999999999999876 3221 33
Q ss_pred HHHHHHHHHH---HHH--hcccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhh
Q 040484 92 AERAMAQVLR---NVI--FSRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAA 166 (194)
Q Consensus 92 ~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~ 166 (194)
+......... ..| ...++..+...+.+-+.|.+|+++|.+ -.+++|+.|| ++|.||+.++|-|..++...+.+
T Consensus 97 E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~s-p~~~~Fl~Gd-~lt~aDcsLlPKL~~i~va~k~y 174 (221)
T KOG1422|consen 97 ESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKS-PSRRKFLDGD-KLTLADCSLLPKLHHIKVAAKHY 174 (221)
T ss_pred HHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcC-ccCCccccCC-eeeeehhhhchhHHHHHHHHHHh
Confidence 3333334444 223 233445566677888999999999541 1358999999 99999999999999998766544
Q ss_pred -hccccccCCcccchHHHHHHHhccCCCC
Q 040484 167 -ARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 167 -~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
+++ + .+..+.+++|...+.++.+|
T Consensus 175 k~~~--I--P~~lt~V~rYl~~~ya~d~F 199 (221)
T KOG1422|consen 175 KNFE--I--PASLTGVWRYLKNAYARDEF 199 (221)
T ss_pred cCCC--C--chhhhHHHHHHHHHHhHHHh
Confidence 333 2 57899999999999988764
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.88 E-value=1.5e-21 Score=166.08 Aligned_cols=156 Identities=18% Similarity=0.118 Sum_probs=126.7
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEE-eCCeeeechHHHHHHHHhhcCCCCC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF-HNEKCFSESLVIIEYIDDTWKHNPS 85 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~~~~~ 85 (194)
++||+.+.++ +.++.++|++.|++|+.+.. +|. |+||+|+ ++|.+++||.||++||++.++.+.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~~------------~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~- 67 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDPS------------LKS-GSAPTLLFSSGEKLTGTNVLLRYIARSASLPG- 67 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEeec------------CCC-CCCcEEEECCCCEEECHHHHHHHHHHhCCCcC-
Confidence 7999999874 77899999999999998752 588 8999999 588999999999999999998776
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhh
Q 040484 86 ILPQDPAERAMAQVLRNVIFSRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEA 165 (194)
Q Consensus 86 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~ 165 (194)
|+|.++.+++.+++|+........ ...+.+.++.||.+ |++++||+|+ ++|+||+++++.+........
T Consensus 68 L~p~d~~erAqV~qWL~~~~~~~~-----~~~l~~~L~~LE~~----L~~rtYLvGd-~lTLADIaL~~~L~~~~~~~~- 136 (722)
T PLN02907 68 FYGQDAFESSQVDEWLDYAPTFSS-----GSEFENACEYVDGY----LASRTFLVGY-SLTIADIAIWSGLAGSGQRWE- 136 (722)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccc-----HHHHHHHHHHHHHH----hccCCeecCC-CCCHHHHHHHHHHHhhhhhhh-
Confidence 999999999999999954432111 12456778999999 7888999999 999999999988766421111
Q ss_pred hhccccccCCcccchHHHHHHHhccCCC
Q 040484 166 AARTQIIFDSQKYTCWDKWTKNFSELPF 193 (194)
Q Consensus 166 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 193 (194)
... ....+|+|.+|++++.++|+
T Consensus 137 -~~~----~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 137 -SLR----KSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred -ccc----ccccCHHHHHHHHHHHhCCC
Confidence 111 15789999999999999997
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.86 E-value=3.4e-21 Score=120.22 Aligned_cols=74 Identities=32% Similarity=0.499 Sum_probs=71.2
Q ss_pred EeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCC
Q 040484 9 LLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHN 83 (194)
Q Consensus 9 Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~ 83 (194)
||+++.||||+|+|++|+++||+|+.+.++...+.+++.+.||. ++||+|++||.+++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999998888999999999 999999999999999999999999999864
No 25
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.85 E-value=2.9e-20 Score=137.98 Aligned_cols=170 Identities=17% Similarity=0.238 Sum_probs=117.7
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCCCC
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHNPS 85 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~~ 85 (194)
+++||.+..||||.++|.+|.+.|++|++++|++..+. +++ -+.+ ++||+|...|+.+.||++|+.-|..-.+.+..
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~-eIk-~Ssy-kKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQ-EIK-WSSY-KKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhh-hcc-cccc-ccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 68999999999999999999999999999999987533 332 2455 89999998787899999999988443321100
Q ss_pred -------CCC--------------------------------CCHHHHHHHHHHH-----------------------HH
Q 040484 86 -------ILP--------------------------------QDPAERAMAQVLR-----------------------NV 103 (194)
Q Consensus 86 -------l~p--------------------------------~~~~~~~~~~~~~-----------------------~~ 103 (194)
++| ++..+....++|+ ..
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 122 1223445566666 00
Q ss_pred Hh----------------------------c----ccHHHHHHHHHHHHHHHHHHHHHHhhh-CCccceecCCCCcchhh
Q 040484 104 IF----------------------------S----RGERQERQVKQIKDAMEVIEKVLMLEL-KGKKFFGGDADVGLIDI 150 (194)
Q Consensus 104 ~~----------------------------~----~~~~~~~~~~~~~~~l~~le~~l~~~l-~~~~fl~G~~~~t~aD~ 150 (194)
|. . ...+....++.+.++++..-.. + .++||+.|+ +|++||+
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaa----lgknr~flGG~-kPnLaDL 321 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAA----LGKNRPFLGGK-KPNLADL 321 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH----hCCCCCccCCC-CCchhhh
Confidence 00 0 0001122344444444444444 4 688999999 9999999
Q ss_pred HHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 151 VLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 151 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
++++.++.+.....+-+ .-+..+|.+|+.+|++
T Consensus 322 svfGvl~sm~gc~afkd-------~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 322 SVFGVLRSMEGCQAFKD-------CLQNTSIGEWYYRMEA 354 (370)
T ss_pred hhhhhhhHhhhhhHHHH-------HHhcchHHHHHHHHHH
Confidence 99999999986554322 4568999999999875
No 26
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.83 E-value=3.3e-20 Score=115.16 Aligned_cols=73 Identities=30% Similarity=0.435 Sum_probs=69.3
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTW 80 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 80 (194)
|+||+.+.||+|++++++|+++|++|+.+.++...+.+++++.||. |++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999988878899999999 899999999999999999999999864
No 27
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.83 E-value=3.6e-20 Score=118.28 Aligned_cols=71 Identities=23% Similarity=0.229 Sum_probs=67.5
Q ss_pred CCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCCC
Q 040484 13 WFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHNP 84 (194)
Q Consensus 13 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~ 84 (194)
..||||||+|++|+++|++|+.+.|++..++++|+++||. |++|+|.++|.+++||.+|++||++++..++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~~~ 90 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCPPK 90 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccCCC
Confidence 5799999999999999999999999999989999999999 9999999999999999999999999988654
No 28
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.83 E-value=6e-20 Score=114.32 Aligned_cols=74 Identities=61% Similarity=0.974 Sum_probs=68.4
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTW 80 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 80 (194)
|+||+++.||+|++++++|+++|++|+.+.++...+.+++++.||.++++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 58999999999999999999999999999998887788999999932799999999999999999999999864
No 29
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.83 E-value=4.5e-20 Score=114.39 Aligned_cols=70 Identities=21% Similarity=0.394 Sum_probs=65.2
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
++||+++.||+|++++++|+++|++|+.+.++.. .+.+++.++||. |+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999874 456789999999 999999999999999999999985
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=1.6e-19 Score=113.22 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=65.9
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEe--CCeeeechHHHHHHHHhhc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFH--NEKCFSESLVIIEYIDDTW 80 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~--~~~~i~eS~~I~~yL~~~~ 80 (194)
++||+++.||+|++++++|.++|++|+.+.++... ..+++++.||. +++|+|++ +|..++||.+|++||++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 79999999999999999999999999999887543 46789999999 99999996 4689999999999999874
No 31
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.80 E-value=2.9e-19 Score=111.19 Aligned_cols=71 Identities=23% Similarity=0.162 Sum_probs=65.8
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHh
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDD 78 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~ 78 (194)
++||+++.||+|++++++|+++|++|+.+.++.. ...+++++.||. +++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999999874 346899999999 8999999999999999999999974
No 32
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.80 E-value=2.7e-19 Score=110.48 Aligned_cols=69 Identities=28% Similarity=0.339 Sum_probs=64.9
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeC-CeeeechHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHN-EKCFSESLVIIEYI 76 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-~~~i~eS~~I~~yL 76 (194)
++||+++.||+|+|++++|+++|++|+.+.++...+.+++++.||. ++||+|+++ |..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 3899999999999999999999999999999988778899999999 999999974 89999999999996
No 33
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.80 E-value=1.6e-19 Score=112.05 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=66.7
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHh
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDD 78 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~ 78 (194)
+++||+++.|++|+++|++|+++|++|+.+.++.....+++++.||. +++|+|+++|.+++||.+|++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhc
Confidence 47999999999999999999999999999999876556689999999 9999999999999999999999975
No 34
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.79 E-value=6.5e-19 Score=110.15 Aligned_cols=72 Identities=33% Similarity=0.425 Sum_probs=66.6
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhh
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDT 79 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~ 79 (194)
++||+++.||+|+++|++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 6999999999999999999999999999998875 456789999999 99999999999999999999999863
No 35
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.78 E-value=1.4e-18 Score=108.63 Aligned_cols=73 Identities=23% Similarity=0.331 Sum_probs=66.8
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC---CchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN---KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTW 80 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 80 (194)
++||+++.|++|++++++|+++|++|+.+.++... ..+++.+.||. +++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999998753 35689999999 999999999999999999999999864
No 36
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=1.9e-18 Score=107.13 Aligned_cols=70 Identities=31% Similarity=0.408 Sum_probs=64.8
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
++||+++.||+|++++++|+++|++|+.+.++.. .+.+++++.||. +++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 356889999999 899999999999999999999984
No 37
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.77 E-value=2.9e-18 Score=108.55 Aligned_cols=73 Identities=23% Similarity=0.304 Sum_probs=67.0
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeC---CeeeechHHHHHHHHhhc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHN---EKCFSESLVIIEYIDDTW 80 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~---~~~i~eS~~I~~yL~~~~ 80 (194)
++||+++. |+|++++++|+++|++|+.+.++.. .+.+++++.||. +++|+|+++ |..++||.+|++||++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 79999986 9999999999999999999999864 456899999999 999999986 889999999999999987
Q ss_pred C
Q 040484 81 K 81 (194)
Q Consensus 81 ~ 81 (194)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 38
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.77 E-value=2.3e-18 Score=110.85 Aligned_cols=73 Identities=29% Similarity=0.439 Sum_probs=67.5
Q ss_pred CCceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeC-CeeeechHHHHHHHH
Q 040484 4 QAEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHN-EKCFSESLVIIEYID 77 (194)
Q Consensus 4 ~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-~~~i~eS~~I~~yL~ 77 (194)
.+.++||+.+.||+|++++++|+++|++|+.+.++.....+++.+.||. +++|+|+++ |..++||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 3579999999999999999999999999999999987766789999999 999999976 899999999999985
No 39
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.77 E-value=2e-18 Score=106.53 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=61.6
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeC-CeeeechHHHHHHHHh
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHN-EKCFSESLVIIEYIDD 78 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-~~~i~eS~~I~~yL~~ 78 (194)
|+||+++.||+|+|+|++|.++|++|+.+.++... .....+.+|. +++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 58999999999999999999999999999888653 3344678998 899999975 8999999999999974
No 40
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.77 E-value=2.6e-18 Score=107.12 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=65.3
Q ss_pred EEeecCCCchHHHHHHHHHHhCCcceEEEccCC--CCchhhhhhCCCCCcccEEEe-CCeeeechHHHHHHHHh
Q 040484 8 KLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT--NKSSLLLNSNPIYKRIPVLFH-NEKCFSESLVIIEYIDD 78 (194)
Q Consensus 8 ~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~L~~-~~~~i~eS~~I~~yL~~ 78 (194)
+||+++.||+|++++++|+++|++|+.+.++.. .+.++++++||. +++|+|++ +|.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999985 467899999999 99999996 58899999999999985
No 41
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.76 E-value=2.3e-18 Score=106.80 Aligned_cols=70 Identities=29% Similarity=0.330 Sum_probs=65.4
Q ss_pred eEEeecCCCchHHHHHHHHHH--hCCcceEEEccCCCCchhhhhhCCCCCcccEEE-eCCeeeechHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKL--KGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF-HNEKCFSESLVIIEYID 77 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~~~~i~eS~~I~~yL~ 77 (194)
++||+++.||+|+++|++|.+ +|++|+.+.++...+.+++++.||. +++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999987778899999999 9999998 58899999999999985
No 42
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.76 E-value=1.8e-18 Score=107.01 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=64.1
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHh
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDD 78 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~ 78 (194)
++||+++.|++|+++|++|+++|++|+.+.++... ...++.+.||. +++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999998753 23458899999 9999999999999999999999974
No 43
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.76 E-value=3.5e-18 Score=106.13 Aligned_cols=70 Identities=29% Similarity=0.367 Sum_probs=63.9
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEE-eCCeeeechHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLF-HNEKCFSESLVIIEYID 77 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~-~~~~~i~eS~~I~~yL~ 77 (194)
++||+++.||+|+++|++|+++|++|+.+.++.. ...+++.+.||. +++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999999864 346789999999 8999999 57889999999999985
No 44
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.76 E-value=5.2e-18 Score=105.25 Aligned_cols=70 Identities=29% Similarity=0.459 Sum_probs=64.4
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
++||+++.||++++++++|+++|++|+.+.++.. .+.+++++.||. +++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999998753 346789999999 999999999999999999999984
No 45
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.75 E-value=8.6e-18 Score=105.01 Aligned_cols=73 Identities=26% Similarity=0.414 Sum_probs=66.6
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWK 81 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~ 81 (194)
++||+++. +++++++++|+++|++|+.+.++.. .+.+++++.||. +++|+|+++|..++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 48999986 6899999999999999999999874 567899999999 9999999999999999999999998864
No 46
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.75 E-value=5.3e-18 Score=106.31 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=63.0
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeC----CeeeechHHHHHHHHhhc
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHN----EKCFSESLVIIEYIDDTW 80 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~----~~~i~eS~~I~~yL~~~~ 80 (194)
+++||+++.||+|++++++|.++|++|+.+.+++... +++ ..+|. +++|+|+++ |.+++||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~-~~~-~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSR-KEI-KWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhH-HHH-HHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 5899999999999999999999999999999876542 333 56998 899999955 789999999999999875
No 47
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.75 E-value=8.5e-18 Score=104.19 Aligned_cols=70 Identities=33% Similarity=0.427 Sum_probs=65.0
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
|+||+++.|++|+++|++|+++|++|+.+.++.. .+.+++++.||. +++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999874 456889999999 999999999999999999999985
No 48
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.74 E-value=1.7e-17 Score=103.96 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=65.6
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeC-CeeeechHHHHHHHHhhcC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHN-EKCFSESLVIIEYIDDTWK 81 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~-~~~i~eS~~I~~yL~~~~~ 81 (194)
++||+++.| .+++++++|+++|++|+.+.++.. .+.+++++.||. +++|+|+++ |..++||.+|++||++.++
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999976 699999999999999999999875 357899999999 999999976 8999999999999998864
No 49
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.73 E-value=1.8e-17 Score=101.88 Aligned_cols=65 Identities=35% Similarity=0.550 Sum_probs=56.8
Q ss_pred CCchHHHHHHHHHHhCCcceEEEccC----CCCchhhhhhCCCCCcccEEEe-CCeeeechHHHHHHHHhh
Q 040484 14 FSVFSVRVEWALKLKGIKYVKIEEDT----TNKSSLLLNSNPIYKRIPVLFH-NEKCFSESLVIIEYIDDT 79 (194)
Q Consensus 14 ~~p~~~~~~~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~~~~vP~L~~-~~~~i~eS~~I~~yL~~~ 79 (194)
.||||+|++++|+++|++|+...++. ..+++++.+.||. ++||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999998844 3456899999999 89999996 789999999999999874
No 50
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.72 E-value=3.8e-17 Score=102.82 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=62.2
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhC-----CCCCcccEEEeCCeeeechHHHHHHHHhhc
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSN-----PIYKRIPVLFHNEKCFSESLVIIEYIDDTW 80 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 80 (194)
+++||+++.++.|++++++|+++|++|+.+.++.. +++.+.+ |. +++|+|++||.+++||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 47999999999999999999999999999988753 2332233 57 899999999999999999999999987
Q ss_pred C
Q 040484 81 K 81 (194)
Q Consensus 81 ~ 81 (194)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 51
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.72 E-value=1e-16 Score=118.55 Aligned_cols=166 Identities=15% Similarity=0.110 Sum_probs=122.5
Q ss_pred eEEeecC-------CCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhh
Q 040484 7 VKLLGRW-------FSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDT 79 (194)
Q Consensus 7 ~~Ly~~~-------~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~ 79 (194)
+-||.++ .||||.++..+|+..+|||+.+.- +++..+.. |++|.++-||+.+.||..|..+|.+.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~-------~~~~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~h 117 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDC-------SLKRRSRN-GTLPFIELNGEHIADSDLIEDRLRKH 117 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccc-------cceeeccC-CCcceEEeCCeeccccHHHHHHHHHH
Confidence 6688764 899999999999999999998844 33345777 89999999999999999999999988
Q ss_pred cCCCCCCCCCCHHHHHHHHH----------HH------------------------------HHH-----hc--------
Q 040484 80 WKHNPSILPQDPAERAMAQV----------LR------------------------------NVI-----FS-------- 106 (194)
Q Consensus 80 ~~~~~~l~p~~~~~~~~~~~----------~~------------------------------~~~-----~~-------- 106 (194)
++-+..| + +.+++..+. |+ +.+ .+
T Consensus 118 f~~~~~L-~--~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g 194 (281)
T KOG4244|consen 118 FKIPDDL-S--AEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTG 194 (281)
T ss_pred cCCCCCC-C--HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 8855533 3 333333222 22 111 10
Q ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHH
Q 040484 107 --RGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKW 184 (194)
Q Consensus 107 --~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~ 184 (194)
..-..+++.+.+.+.|..+++. |++.+|+.|+ ++|-+|+.+++.|..+-+ .-..... .+-.+++|+|.+|
T Consensus 195 ~IG~f~~~Ei~ell~rDlr~i~~~----Lg~KkflfGd-kit~~DatvFgqLa~v~Y-P~~~~i~--d~le~d~p~l~eY 266 (281)
T KOG4244|consen 195 AIGDFESAEIDELLHRDLRAISDY----LGDKKFLFGD-KITPADATVFGQLAQVYY-PFRSHIS--DLLEGDFPNLLEY 266 (281)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHH----hCCCccccCC-CCCcceeeehhhhhheec-cCCCcHH--HHHhhhchHHHHH
Confidence 0112345677788899999999 8999999999 999999999999988765 1011111 1115789999999
Q ss_pred HHHhccC
Q 040484 185 TKNFSEL 191 (194)
Q Consensus 185 ~~~~~~~ 191 (194)
++|+++.
T Consensus 267 ceRIr~~ 273 (281)
T KOG4244|consen 267 CERIRKE 273 (281)
T ss_pred HHHHHHH
Confidence 9999864
No 52
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.71 E-value=4.4e-17 Score=103.22 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=62.2
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC----Cchhhhh-----hCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN----KSSLLLN-----SNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~----~~~~~~~-----~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
.+|||+..++.|+++|++|+++|++|+.+.|++.. +.+++.+ .+|. ++||+|++||..++||.||++||+
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHh
Confidence 37999999999999999999999999999998753 1234432 2398 899999999999999999999998
Q ss_pred hhc
Q 040484 78 DTW 80 (194)
Q Consensus 78 ~~~ 80 (194)
+++
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 764
No 53
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.71 E-value=5.9e-17 Score=101.00 Aligned_cols=67 Identities=22% Similarity=0.365 Sum_probs=61.0
Q ss_pred eEEeecC-------CCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhh
Q 040484 7 VKLLGRW-------FSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDT 79 (194)
Q Consensus 7 ~~Ly~~~-------~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~ 79 (194)
++||+++ .||+|++++++|+++|++|+.+.++. .+.||. +++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 6999998 68999999999999999999988864 257999 99999999999999999999999998
Q ss_pred cC
Q 040484 80 WK 81 (194)
Q Consensus 80 ~~ 81 (194)
++
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 64
No 54
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.4e-16 Score=111.00 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=117.2
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEE-eCCeeeechHHHHHHHHhhcCCCCC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF-HNEKCFSESLVIIEYIDDTWKHNPS 85 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~~~~~ 85 (194)
|+||-+..||||-|+||++.+++||++.+...-++..-...-++ . ++||+|+ ++|..+.||..|.+|+++..+.+-
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG-~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~- 77 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIG-Q-KQVPILQKEDGRAMPESLDIVHYVDELDGKPL- 77 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhc-c-cccceEEccccccchhhhHHHHHHHHhcCchh-
Confidence 58999999999999999999999999999887765333333344 3 7999999 889999999999999999988653
Q ss_pred CCCCCHHHHHHHHHHH-----------------------------HHHhcc-----------cHHHHHHHHHHHHHHHHH
Q 040484 86 ILPQDPAERAMAQVLR-----------------------------NVIFSR-----------GERQERQVKQIKDAMEVI 125 (194)
Q Consensus 86 l~p~~~~~~~~~~~~~-----------------------------~~~~~~-----------~~~~~~~~~~~~~~l~~l 125 (194)
+.++ .+..+..|+ ..|... -.+......++...+.++
T Consensus 78 lt~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l 154 (215)
T COG2999 78 LTGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRAL 154 (215)
T ss_pred hccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHH
Confidence 2221 122344444 122111 111245677888889999
Q ss_pred HHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCC
Q 040484 126 EKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPF 193 (194)
Q Consensus 126 e~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 193 (194)
+..+ .+..-+.| .++.-|+.++++|+.+.... | .+=-.++..|..+|++...
T Consensus 155 ~~Li----~~~s~~n~--~l~~ddi~vFplLRnlt~v~---g-------i~wps~v~dy~~~msektq 206 (215)
T COG2999 155 DKLI----VGPSAVNG--ELSEDDILVFPLLRNLTLVA---G-------IQWPSRVADYRDNMSEKTQ 206 (215)
T ss_pred HHHh----cCcchhcc--ccchhhhhhhHHhccceecc---c-------CCCcHHHHHHHHHHHHhhC
Confidence 9884 33333344 59999999999999986432 2 1223678899999887644
No 55
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.69 E-value=2.7e-16 Score=98.19 Aligned_cols=72 Identities=26% Similarity=0.346 Sum_probs=60.2
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeC-CeeeechHHHHHHHHh
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHN-EKCFSESLVIIEYIDD 78 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~-~~~i~eS~~I~~yL~~ 78 (194)
|+|+++...++++++|++|+++|++|+.+.++.. .+.+++++.||..|++|+|+++ |.+++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3555555666999999999999999999999984 3349999999962599999998 9999999999999985
No 56
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.68 E-value=2.7e-16 Score=96.13 Aligned_cols=70 Identities=34% Similarity=0.416 Sum_probs=63.5
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCch-hhhhhCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSS-LLLNSNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
++||+++.||+|++++++|+++|++|+.+.++...... ++++.+|. +++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998764333 58889998 899999999999999999999984
No 57
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.68 E-value=1.9e-16 Score=100.89 Aligned_cols=67 Identities=22% Similarity=0.409 Sum_probs=58.8
Q ss_pred CCCchHHHHHHHHHHhCCcceEEEccCCCCc---hhhhhhCCCCCcccEEEeC-CeeeechHHHHHHHHhhcC
Q 040484 13 WFSVFSVRVEWALKLKGIKYVKIEEDTTNKS---SLLLNSNPIYKRIPVLFHN-EKCFSESLVIIEYIDDTWK 81 (194)
Q Consensus 13 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~---~~~~~~~p~~~~vP~L~~~-~~~i~eS~~I~~yL~~~~~ 81 (194)
+.||+|+++|++|.++|++|+.+.++..... +++ +.||. +++|+|+++ |..++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6899999999999999999999999875322 334 78999 999999988 8999999999999998864
No 58
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.65 E-value=6.1e-16 Score=95.82 Aligned_cols=65 Identities=28% Similarity=0.399 Sum_probs=59.6
Q ss_pred cCCCchHHHHHHHHHHhCCcceEEEccCCC--CchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 12 RWFSVFSVRVEWALKLKGIKYVKIEEDTTN--KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 12 ~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
...||++++++++|+++|++|+.+.++... ..+++++.||. +++|+|+++|.+++||.+|++||+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 468999999999999999999999998753 46889999999 999999999999999999999984
No 59
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.63 E-value=1.9e-15 Score=93.36 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=58.2
Q ss_pred eEEeecC-------CCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhh
Q 040484 7 VKLLGRW-------FSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDT 79 (194)
Q Consensus 7 ~~Ly~~~-------~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~ 79 (194)
++||.++ .||+|++++++|+++|++|+.+.++... .+|. +++|+|+++|..++||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3688776 9999999999999999999999987532 6898 89999999999999999999999864
No 60
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-14 Score=108.38 Aligned_cols=183 Identities=19% Similarity=0.247 Sum_probs=128.0
Q ss_pred CCCceEEeecCCCchHHHHHHHHHHhCCc--ceEEEccCC------CCch------------------hhhhhCCCC---
Q 040484 3 EQAEVKLLGRWFSVFSVRVEWALKLKGIK--YVKIEEDTT------NKSS------------------LLLNSNPIY--- 53 (194)
Q Consensus 3 ~~~~~~Ly~~~~~p~~~~~~~~l~~~gi~--~~~~~v~~~------~~~~------------------~~~~~~p~~--- 53 (194)
+..++.||.+..||+++|..++=+++|+. ..+..|++. ...+ -+....|-|
T Consensus 48 e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgR 127 (324)
T COG0435 48 EKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGR 127 (324)
T ss_pred CCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCc
Confidence 35689999999999999999999999975 222222221 0000 011112211
Q ss_pred CcccEEEeCC--e-eeechHHHHHHHHhhcC----CCCCCCCCCHHHHHHHHH---HH------H----HHhcccHHHHH
Q 040484 54 KRIPVLFHNE--K-CFSESLVIIEYIDDTWK----HNPSILPQDPAERAMAQV---LR------N----VIFSRGERQER 113 (194)
Q Consensus 54 ~~vP~L~~~~--~-~i~eS~~I~~yL~~~~~----~~~~l~p~~~~~~~~~~~---~~------~----~~~~~~~~~~~ 113 (194)
-+||+|.|.. + +-.||..|++-+...+. ....|+|++. +.+++. |+ . .|...++.-++
T Consensus 128 vTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~L--r~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYee 205 (324)
T COG0435 128 VTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEAL--RTEIDELNKWIYDTVNNGVYKAGFATTQEAYEE 205 (324)
T ss_pred eeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHH--HHHHHHHHhhhcccccCceeeecccchHHHHHH
Confidence 3799999753 3 34899999999976664 2223888655 445544 44 1 22346667788
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhh-hhhccccccCCcccchHHHHHHHhccCC
Q 040484 114 QVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGE-AAARTQIIFDSQKYTCWDKWTKNFSELP 192 (194)
Q Consensus 114 ~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p 192 (194)
....+-..|++||.. |+++.|++|+ ++|-||+-|++.|.+++.+-. .+..+ .-....||+|..|.+.+.+.|
T Consensus 206 a~~~lF~~Ld~lE~~----L~~~ryl~Gd-~lTEAD~RLftTlvRFD~VYvgHFKCN--~~rI~dypnL~~yLr~LYq~p 278 (324)
T COG0435 206 AVKKLFEALDKLEQI----LSERRYLTGD-QLTEADIRLFTTLVRFDPVYVGHFKCN--LRRIRDYPNLWGYLRDLYQLP 278 (324)
T ss_pred HHHHHHHHHHHHHHH----hhcCeeeccc-cchHhhhhhhheeEeecceEEeeeecc--cchhhcCchHHHHHHHHhcCc
Confidence 899999999999999 8899999999 999999999999999874221 11222 112467999999999999999
Q ss_pred CC
Q 040484 193 FV 194 (194)
Q Consensus 193 ~~ 194 (194)
.|
T Consensus 279 g~ 280 (324)
T COG0435 279 GF 280 (324)
T ss_pred cc
Confidence 75
No 61
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.5e-13 Score=99.55 Aligned_cols=182 Identities=23% Similarity=0.281 Sum_probs=122.9
Q ss_pred CceEEeecCCCchHHHHHHHHHHhCCc----ceEEEccCC-------C------Cc-----------------hhhhhhC
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLKGIK----YVKIEEDTT-------N------KS-----------------SLLLNSN 50 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~gi~----~~~~~v~~~-------~------~~-----------------~~~~~~~ 50 (194)
+++.||..-.||+++|+.+..+.+|+. +.++.--.+ + .+ +-+...+
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 579999999999999999999999976 322221000 0 00 0011112
Q ss_pred CCC---CcccEEEeCC---eeeechHHHHHHHHhhcCC------C--CCCCCCCHHHHHHHHH---HH------H----H
Q 040484 51 PIY---KRIPVLFHNE---KCFSESLVIIEYIDDTWKH------N--PSILPQDPAERAMAQV---LR------N----V 103 (194)
Q Consensus 51 p~~---~~vP~L~~~~---~~i~eS~~I~~yL~~~~~~------~--~~l~p~~~~~~~~~~~---~~------~----~ 103 (194)
|.| -+||+|-|-. .+-.||..|++.+...+.. . -.|+|.+. ++.++. |+ + .
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L--~~~Ide~N~wvy~~INNGVYk~G 193 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSL--RAQIDETNSWVYDKINNGVYKCG 193 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHH--HHHHhhhhceecccccCceeeec
Confidence 211 2799999754 3458999999999844331 1 12778655 555554 55 1 2
Q ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHhhhCCcc--ceecCCCCcchhhHHhhHHHHHHHHh-hhhhccccccCCcccch
Q 040484 104 IFSRGERQERQVKQIKDAMEVIEKVLMLELKGKK--FFGGDADVGLIDIVLGWLPIWLDAIG-EAAARTQIIFDSQKYTC 180 (194)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~--fl~G~~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~p~ 180 (194)
|...++.-+....++-+.|+++|+. |+++. |++|+ ++|-||+-|++.+.+++.+- ..+..+...+ .+.||+
T Consensus 194 FA~~~e~Ye~~V~~lfe~LDr~E~v----L~~~~~~f~~G~-~LTeaDirLy~TiIRFD~VY~~hFKCn~~~i-r~~Yp~ 267 (319)
T KOG2903|consen 194 FAEKQEAYEEEVNQLFEALDRCEDV----LGKNRKYFLCGD-TLTEADIRLYTTIIRFDEVYVQHFKCNKKTI-RDEYPN 267 (319)
T ss_pred cccccchHHHHHHHHHHHHHHHHHH----HhcccceEeecc-ccchhheeeeeeEEeehhhhheeeecchhhh-hccCcH
Confidence 2346667788889999999999999 55555 99999 99999999999999886322 2222221121 458999
Q ss_pred HHHHHHHhcc-CCCC
Q 040484 181 WDKWTKNFSE-LPFV 194 (194)
Q Consensus 181 l~~~~~~~~~-~p~~ 194 (194)
|..|..++.+ .|+|
T Consensus 268 l~~~lk~iY~~~~~~ 282 (319)
T KOG2903|consen 268 LHNWLKNIYWNIPGF 282 (319)
T ss_pred HHHHHHHHHhhccch
Confidence 9999999987 5553
No 62
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.47 E-value=5e-13 Score=91.35 Aligned_cols=96 Identities=35% Similarity=0.632 Sum_probs=71.3
Q ss_pred HHHHHHHHHHH------------HHhcccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHH
Q 040484 92 AERAMAQVLRN------------VIFSRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWL 159 (194)
Q Consensus 92 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~ 159 (194)
.+++++++|+. .+...+...+.....+.+.++.||+. +++++|++|+ ++|+||+++++.+.++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~----L~~~~~l~G~-~~t~ADi~l~~~~~~~ 76 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEE----LGGKPFFGGD-TIGYVDIALGSFLGWF 76 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH----hcCCCCCCCC-CcchHHHHHHHHHHHH
Confidence 35777777771 11122344566788899999999999 7778999999 9999999999999998
Q ss_pred HHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 160 DAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
.......+.+ .+..+.+|++.+|++++.++|+|
T Consensus 77 ~~~~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~ 109 (126)
T cd03185 77 RAYEEVGGVK--LLDEEKTPLLAAWAERFLELEAV 109 (126)
T ss_pred HHHHHHcCcc--ccCcccCchHHHHHHHHHhccHH
Confidence 6433222221 11246799999999999999975
No 63
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.44 E-value=7.9e-13 Score=89.11 Aligned_cols=94 Identities=19% Similarity=0.243 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHH--------HHHh------c-ccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhh
Q 040484 90 DPAERAMAQVLR--------NVIF------S-RGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGW 154 (194)
Q Consensus 90 ~~~~~~~~~~~~--------~~~~------~-~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~ 154 (194)
++.+++.+++|+ +.+. . .....+.....+.+.+..||++ |++++|++|+ ++|+||+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~----L~~~~yl~Gd-~~tlADi~l~~ 77 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEAR----LQQHSYLLGD-KPSLADWAIFP 77 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHH----HccCCccCCC-CccHHHHHHHH
Confidence 678899999998 1111 1 1124667788899999999999 7788999999 99999999998
Q ss_pred HHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 155 LPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
.+.++... ...+. ....+|+|.+|++++.++|+|
T Consensus 78 ~l~~~~~~-~~~~~-----~~~~~P~L~~w~~r~~~rpa~ 111 (115)
T cd03196 78 FVRQFAHV-DPKWF-----DQSPYPRLRRWLNGFLASPLF 111 (115)
T ss_pred HHHHHHHh-hhccc-----CcccCHHHHHHHHHHHcChHH
Confidence 88766422 11111 257899999999999999975
No 64
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.44 E-value=7.9e-13 Score=83.06 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=65.8
Q ss_pred CCCceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 3 EQAEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 3 ~~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
...+++||+.++||+|.+++.+|+..|++|+.+.++-+....++...++. .++|++..||..+.++..|.+||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 35689999999999999999999999999999998766545677777777 799999999999999999999984
No 65
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.40 E-value=1.8e-12 Score=86.07 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHH------------HhcccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHH
Q 040484 92 AERAMAQVLRNV------------IFSRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWL 159 (194)
Q Consensus 92 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~ 159 (194)
.++++++.|+.. +...++..+.....+.+.+..||+. |++++|++|+ ++|+||+++++.+.+.
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~----L~~~~~l~G~-~~t~aDi~~~~~~~~~ 76 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPV----FAHKPYFMSE-EFSLVDCALAPLLWRL 76 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----HcCCCcccCC-CCcHHHHHHHHHHHHH
Confidence 457778887711 1122444566788899999999999 7889999999 9999999999987554
Q ss_pred HHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 160 DAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
.. .+.+ . ...+|++.+|++++.++|+|
T Consensus 77 ~~----~~~~--~--~~~~p~l~~w~~~~~~rpa~ 103 (107)
T cd03186 77 PA----LGIE--L--PKQAKPLKDYMERVFARDSF 103 (107)
T ss_pred HH----cCCC--C--cccchHHHHHHHHHHCCHHH
Confidence 31 2322 1 24799999999999999975
No 66
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.38 E-value=2.5e-12 Score=83.81 Aligned_cols=96 Identities=14% Similarity=0.165 Sum_probs=72.7
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHH
Q 040484 73 IEYIDDTWKHNPSILPQDPAERAMAQVLRNVIFSRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVL 152 (194)
Q Consensus 73 ~~yL~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l 152 (194)
++||++..+ ++|.++.+++.++.|+..+...- .......+.+.++.+|++ |++++|++|+ ++|+||+++
T Consensus 1 ~r~~~~~~~----~~~~~~~~~~~vd~~~d~~~~~l--~~~~~~~~~~~l~~le~~----L~~~~fl~Gd-~~tiADi~l 69 (96)
T cd03200 1 ARFLYRLLG----PAPNAPNAATNIDSWVDTAIFQL--AEGSSKEKAAVLRALNSA----LGRSPWLVGS-EFTVADIVS 69 (96)
T ss_pred CchHHHHhc----ccCCCchHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHH----HcCCCccCCC-CCCHHHHHH
Confidence 478888833 89999999999999996432100 012344566788889999 7889999999 999999999
Q ss_pred hhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccC
Q 040484 153 GWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSEL 191 (194)
Q Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 191 (194)
++.+.+. +.. ...+|+|.+|++++.++
T Consensus 70 ~~~l~~~-------~~~-----~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 70 WCALLQT-------GLA-----SAAPANVQRWLKSCENL 96 (96)
T ss_pred HHHHHHc-------ccc-----cccChHHHHHHHHHHhC
Confidence 9887642 212 46799999999999763
No 67
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.37 E-value=6.9e-12 Score=84.83 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHH-------------HHh---cc-----------cHHHHHHHHHHHHHHHHHHHHHHhhhCCcccee
Q 040484 88 PQDPAERAMAQVLRN-------------VIF---SR-----------GERQERQVKQIKDAMEVIEKVLMLELKGKKFFG 140 (194)
Q Consensus 88 p~~~~~~~~~~~~~~-------------~~~---~~-----------~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~ 140 (194)
|.++.+++++++|+. .+. .. ....+.....+.+.++.||+. |++++|++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~----L~~~~~l~ 77 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDR----LAKKGYFV 77 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHH----HccCCCCC
Confidence 567888999999881 111 11 112234556788899999999 78889999
Q ss_pred cCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCC
Q 040484 141 GDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELP 192 (194)
Q Consensus 141 G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 192 (194)
|+ ++|+||+++++.+.+.... +.. ...+|+|.+|++++.++|
T Consensus 78 Gd-~~t~ADi~l~~~~~~~~~~----~~~-----~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 78 GD-KLTAADIMMSFPLEAALAR----GPL-----LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CC-CCCHHHHHHHHHHHHHHHc----Ccc-----cccCchHHHHHHHHhcCC
Confidence 99 9999999999988887431 212 578999999999999987
No 68
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.37 E-value=3.3e-12 Score=78.44 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=49.5
Q ss_pred CCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhh
Q 040484 13 WFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDT 79 (194)
Q Consensus 13 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~ 79 (194)
+.+++|.+++++|++.|+||+.+.+. . .. ..+|. |+||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~--~--~~--~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA--N--AE--FMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC--C--cc--ccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 45678999999999999999988431 1 11 15787 89999999999999999999999763
No 69
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.36 E-value=2.2e-12 Score=83.78 Aligned_cols=70 Identities=29% Similarity=0.491 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCC-cccchHHHHHHHh
Q 040484 110 RQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDS-QKYTCWDKWTKNF 188 (194)
Q Consensus 110 ~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~p~l~~~~~~~ 188 (194)
..+.....+.+.|+.+|+. +++++|++|+ ++|+||+++++.+.++...... . . +++|+|.+|++++
T Consensus 25 ~~~~~~~~~~~~l~~le~~----l~~~~~l~G~-~~t~ADi~~~~~~~~~~~~~~~------~--~~~~~P~l~~w~~~~ 91 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVLEKR----LKGGPYLVGD-KLTIADIALFPMLDWLERLGPD------F--LFEKFPKLKKWYERM 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHTSSSSSBS-S-CHHHHHHHHHHHHHHHHTTT------T--THTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HcCCCeeecc-CCchhHHHHHHHHHHHHHhCCC------c--ccccCHHHHHHHHHH
Confidence 4567788899999999999 7799999999 9999999999999998653322 1 3 8899999999999
Q ss_pred ccCC
Q 040484 189 SELP 192 (194)
Q Consensus 189 ~~~p 192 (194)
.++|
T Consensus 92 ~~~P 95 (95)
T PF00043_consen 92 FARP 95 (95)
T ss_dssp HTSH
T ss_pred HcCC
Confidence 9987
No 70
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.35 E-value=5.3e-12 Score=86.18 Aligned_cols=81 Identities=26% Similarity=0.436 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHH
Q 040484 108 GERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKN 187 (194)
Q Consensus 108 ~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 187 (194)
++..+...+.+.+.++.+|+.|.+ .+++|++|+ ++|+||+++++.+.++.......+. ....+.+|+|++|+++
T Consensus 27 ~~~~~~~~~~~~~~l~~le~~L~~--~~~~yl~G~-~~t~aDi~~~~~~~~~~~~~~~~~~---~~~~~~~p~l~~w~~r 100 (124)
T cd03184 27 PSDREEKKAELRSALENLEEELTK--RGTPFFGGD-SPGMVDYMIWPWFERLEALKLLLGY---EFPLDRFPKLKKWMDA 100 (124)
T ss_pred cccchhhHHHHHHHHHHHHHHHHh--cCCCCcCCC-CccHHHHHhhHHHHHHHHHHhhccc---cCCcccChHHHHHHHH
Confidence 445567788999999999999421 248999999 9999999999999887644322111 1125789999999999
Q ss_pred hccCCCC
Q 040484 188 FSELPFV 194 (194)
Q Consensus 188 ~~~~p~~ 194 (194)
+.++|+|
T Consensus 101 ~~~~p~v 107 (124)
T cd03184 101 MKEDPAV 107 (124)
T ss_pred hccChHH
Confidence 9999975
No 71
>PRK10638 glutaredoxin 3; Provisional
Probab=99.34 E-value=8.2e-12 Score=79.18 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=63.4
Q ss_pred CceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEeCCeeeechHHHHHHH
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYI 76 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL 76 (194)
+++++|+.+.||||++++.+|+.+|++|+.+.|+... ..+++.+.++. .++|++..||..+.+...+..+-
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHH
Confidence 4799999999999999999999999999999997663 45788899998 89999999999999998887764
No 72
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.33 E-value=1.2e-11 Score=83.36 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 111 QERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 111 ~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
.++....+.+.|+.||+. |++++|++|+ ++|+||+++++.+.+... .+.+ . ...+|+|.+|++++.+
T Consensus 47 ~~~~~~~l~~~l~~le~~----L~~~~~l~gd-~~t~aDi~l~~~~~~~~~----~~~~--~--~~~~p~l~~w~~~~~~ 113 (117)
T cd03182 47 GERSKARAADFLAYLDTR----LAGSPYVAGD-RFTIADITAFVGLDFAKV----VKLR--V--PEELTHLRAWYDRMAA 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHH----hcCCCcccCC-CCCHHHHHHHHHhHHHHh----cCCC--C--ccccHHHHHHHHHHHh
Confidence 466678899999999999 7778899999 999999999999988753 2322 1 3689999999999999
Q ss_pred CCCC
Q 040484 191 LPFV 194 (194)
Q Consensus 191 ~p~~ 194 (194)
+|+|
T Consensus 114 ~p~~ 117 (117)
T cd03182 114 RPSA 117 (117)
T ss_pred ccCC
Confidence 9986
No 73
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.33 E-value=1.7e-11 Score=85.71 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHh-hhhhccccccCCcccchHHHHH
Q 040484 107 RGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIG-EAAARTQIIFDSQKYTCWDKWT 185 (194)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~p~l~~~~ 185 (194)
.++..+.....+.+.|+.||+. |++++|++|+ ++|+||+++++.+.++.... ...... ......+|+|.+|+
T Consensus 31 ~~~~~~~~~~~l~~~l~~LE~~----L~~~~yl~Gd-~~TlADi~l~~~l~~~~~~~~~~~~~~--~~~~~~~P~L~~w~ 103 (142)
T cd03190 31 TQEAYDEAVDELFEALDRLEEL----LSDRRYLLGD-RLTEADIRLFTTLIRFDAVYVQHFKCN--LKRIRDYPNLWNYL 103 (142)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH----HccCCeeeCC-CccHHHHHHHHHHHHHHHHhhhhcccc--cchhhhCchHHHHH
Confidence 3444567788899999999999 7788999999 99999999999987764321 111100 01146899999999
Q ss_pred HHhccCCCC
Q 040484 186 KNFSELPFV 194 (194)
Q Consensus 186 ~~~~~~p~~ 194 (194)
+++.++|+|
T Consensus 104 ~r~~~~P~~ 112 (142)
T cd03190 104 RRLYQNPGV 112 (142)
T ss_pred HHHhcCchH
Confidence 999999975
No 74
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.32 E-value=1.1e-11 Score=83.79 Aligned_cols=73 Identities=23% Similarity=0.446 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHh
Q 040484 109 ERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNF 188 (194)
Q Consensus 109 ~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 188 (194)
...+.....+.+.++.||+. |++++|++|+ ++|+||+++++.+.++... .+.+ ...+|+|.+|++++
T Consensus 34 ~~~~~~~~~~~~~l~~le~~----L~~~~~l~G~-~~s~aDi~l~~~~~~~~~~---~~~~-----~~~~p~l~~w~~~~ 100 (118)
T cd03177 34 EPPEEKLDKLEEALDFLETF----LEGSDYVAGD-QLTIADLSLVATVSTLEAL---LPLD-----LSKYPNVRAWLERL 100 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHH----HccCCeeCCC-CcCHHHHHHHHHHHHHHHh---cCCC-----hhhCchHHHHHHHH
Confidence 34456778899999999999 7788999999 9999999999999987531 1222 46799999999999
Q ss_pred ccCCCC
Q 040484 189 SELPFV 194 (194)
Q Consensus 189 ~~~p~~ 194 (194)
.++|+|
T Consensus 101 ~~~p~~ 106 (118)
T cd03177 101 KALPPY 106 (118)
T ss_pred Hcccch
Confidence 999975
No 75
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.32 E-value=9.7e-12 Score=83.32 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 111 QERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 111 ~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
.+.....+.+.++.+|+. +++++|++|+ ++|+||+++++.+.++.. .+.+ .+.+|+|.+|++++.+
T Consensus 41 ~~~~~~~~~~~l~~le~~----l~~~~~l~G~-~~t~aDi~~~~~~~~~~~----~~~~-----~~~~p~l~~w~~~~~~ 106 (114)
T cd03188 41 KAAARERLAARLAYLDAQ----LAGGPYLLGD-RFSVADAYLFVVLRWAPG----VGLD-----LSDWPNLAAYLARVAA 106 (114)
T ss_pred HHHHHHHHHHHHHHHHHH----hcCCCeeeCC-CcchHHHHHHHHHHHHhh----cCCC-----hhhChHHHHHHHHHHh
Confidence 456678899999999999 7788999999 999999999999887643 2222 5679999999999999
Q ss_pred CCCC
Q 040484 191 LPFV 194 (194)
Q Consensus 191 ~p~~ 194 (194)
+|+|
T Consensus 107 ~p~~ 110 (114)
T cd03188 107 RPAV 110 (114)
T ss_pred CHHh
Confidence 9975
No 76
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.30 E-value=2.3e-11 Score=74.94 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=62.7
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
+++||+.++||+|.+++-+|...|++|+.+.++.......+...+.. .++|.+..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 68999999999999999999999999999998766544566666676 799999999999999999999974
No 77
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.29 E-value=1.2e-11 Score=75.54 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHH
Q 040484 109 ERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKN 187 (194)
Q Consensus 109 ~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 187 (194)
...++..+.+.+.++.||+. +++++|++|+ ++|+||+++++.+.++....... + . .+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~----L~~~~fl~G~-~~s~aD~~l~~~l~~~~~~~~~~--~--~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDH----LADGPFLFGD-RPSLADIALAPFLWRLRFVGPDF--D--L--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HTTSSBTTBS-S--HHHHHHHHHHHHHHHCTHTC--C--H--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhhCCCCCCC-CCCHHHHHHHHHHHHHHHhCcCc--C--c--cccCHHHHHHHhC
Confidence 34577889999999999999 7888899999 99999999999999997653321 1 1 4789999999986
No 78
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.28 E-value=1.2e-11 Score=84.92 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=62.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh------------hCCccceecCCCCcchhhHHhhHHHHHHHHhhh-hhcccccc
Q 040484 107 RGERQERQVKQIKDAMEVIEKVLMLE------------LKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEA-AARTQIIF 173 (194)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~le~~l~~~------------l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~-~~~~~~~~ 173 (194)
.++..+...+.+.+.|+.||+.|.+. +++++|++|+ ++|+||+++++.+.++...... .+++ +
T Consensus 23 ~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd-~fTlADi~l~p~L~~~~~~~~~~~g~~--i- 98 (134)
T cd03198 23 NPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGD-ELTLADCNLLPKLHIVKVVAKKYRNFE--I- 98 (134)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhhcCCC--c-
Confidence 34556777889999999999995310 0127899999 9999999999999887643221 1332 1
Q ss_pred CCcccchHHHHHHHhccCCCC
Q 040484 174 DSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 174 ~~~~~p~l~~~~~~~~~~p~~ 194 (194)
...+|+|++|++++.+||+|
T Consensus 99 -~~~~P~L~aw~~ri~aRPsf 118 (134)
T cd03198 99 -PADLTGLWRYLKNAYQREEF 118 (134)
T ss_pred -cccCHHHHHHHHHHHCCHHH
Confidence 37899999999999999975
No 79
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.27 E-value=9.2e-11 Score=79.65 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhC-CccceecCCCCcchhhHHhhHHHHHHHHhhh-hhccccccCCcccchHHHHHHHhc
Q 040484 112 ERQVKQIKDAMEVIEKVLMLELK-GKKFFGGDADVGLIDIVLGWLPIWLDAIGEA-AARTQIIFDSQKYTCWDKWTKNFS 189 (194)
Q Consensus 112 ~~~~~~~~~~l~~le~~l~~~l~-~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~p~l~~~~~~~~ 189 (194)
+...+.+.+.|..||+. |+ +++|++|+ ++|+||+++++.+.++...... .++. . .+.+|+|.+|++++.
T Consensus 29 ~~~~~~l~~~l~~Le~~----L~~~~~fl~Gd-~~TlADi~l~~~l~~l~~~~~~~~~~~--~--~~~~P~l~~w~~rl~ 99 (121)
T cd03201 29 DGTEQALLDELEALEDH----LKENGPFINGE-KISAVDLSLAPKLYHLEIALGHYKNWS--V--PESLTSVKSYMKALF 99 (121)
T ss_pred HHHHHHHHHHHHHHHHH----HhcCCCccCCC-CCCHHhHHHHHHHHHHHHHHHHhcCCC--C--cccchHHHHHHHHHH
Confidence 55677899999999999 55 47999999 9999999999988777643221 1221 1 378999999999999
Q ss_pred cCCCC
Q 040484 190 ELPFV 194 (194)
Q Consensus 190 ~~p~~ 194 (194)
+||+|
T Consensus 100 ~rps~ 104 (121)
T cd03201 100 SRESF 104 (121)
T ss_pred CCchh
Confidence 99986
No 80
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.25 E-value=3.7e-11 Score=79.96 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 111 QERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 111 ~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
.+...+++.+.++.||+. |++++|++|+ ++|+||+++++.+..... .+.. ...+|+|.+|++++.+
T Consensus 41 ~~~~~~~~~~~l~~lE~~----L~~~~~l~g~-~~t~aDi~~~~~~~~~~~----~~~~-----~~~~p~l~~~~~~~~~ 106 (110)
T cd03180 41 IAASLAAWAKLMAILDAQ----LAGRPYLAGD-RFTLADIPLGCSAYRWFE----LPIE-----RPPLPHLERWYARLRA 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHH----hCCCCcccCC-CCCHHHHHHHHHHHHHHH----cccc-----cccCchHHHHHHHHHh
Confidence 356778899999999999 7788999999 999999999988754321 1212 5789999999999999
Q ss_pred CCCC
Q 040484 191 LPFV 194 (194)
Q Consensus 191 ~p~~ 194 (194)
+|+|
T Consensus 107 ~p~~ 110 (110)
T cd03180 107 RPAF 110 (110)
T ss_pred CCCC
Confidence 9986
No 81
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.24 E-value=4.6e-11 Score=79.48 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhh------CCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchH
Q 040484 108 GERQERQVKQIKDAMEVIEKVLMLEL------KGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCW 181 (194)
Q Consensus 108 ~~~~~~~~~~~~~~l~~le~~l~~~l------~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l 181 (194)
.+..++....+.+.++.||.+|.+.- ++++|++|+ ++|+||+++++.+.++... +++........+|+|
T Consensus 24 ~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd-~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P~l 98 (111)
T cd03204 24 VEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGD-TFTLADISLGVTLHRLKFL----GLSRRYWGNGKRPNL 98 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCC-CCCHHHHHHHHHHHHHHHc----CccccccccccChHH
Confidence 33457788999999999999953100 112699999 9999999999999997532 222000002579999
Q ss_pred HHHHHHhccCCCC
Q 040484 182 DKWTKNFSELPFV 194 (194)
Q Consensus 182 ~~~~~~~~~~p~~ 194 (194)
.+|++++.+||+|
T Consensus 99 ~~w~~rv~aRpsf 111 (111)
T cd03204 99 EAYFERVLQRESF 111 (111)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999986
No 82
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.24 E-value=2.3e-11 Score=82.00 Aligned_cols=73 Identities=22% Similarity=0.230 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhc
Q 040484 110 RQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFS 189 (194)
Q Consensus 110 ~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 189 (194)
..+.....+.+.++.||++ |++++|++|+ ++|+||+++++.+.++..... +. ..+.+|+|.+|++++.
T Consensus 42 ~~~~~~~~~~~~l~~le~~----L~~~~~l~G~-~~t~aDi~l~~~~~~~~~~~~--~~-----~~~~~p~l~~~~~~~~ 109 (118)
T cd03187 42 VVEENEEKLKKVLDVYEAR----LSKSKYLAGD-SFTLADLSHLPYLQYLMATPF--AK-----LFDSRPHVKAWWEDIS 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH----cccCcccCCC-CccHHHHHHHHHHHHHHHccc--hh-----hhhcCchHHHHHHHHH
Confidence 3455678899999999999 7888999999 999999999999888753111 11 1467999999999999
Q ss_pred cCCCC
Q 040484 190 ELPFV 194 (194)
Q Consensus 190 ~~p~~ 194 (194)
++|++
T Consensus 110 ~~p~~ 114 (118)
T cd03187 110 ARPAW 114 (118)
T ss_pred hCHHH
Confidence 99975
No 83
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.24 E-value=2.6e-11 Score=81.21 Aligned_cols=72 Identities=24% Similarity=0.387 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhc
Q 040484 110 RQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFS 189 (194)
Q Consensus 110 ~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 189 (194)
..+....++.+.++.+|+. |++++|++|+ ++|+||+++++.+.+.... +.+ ....+|++.+|++++.
T Consensus 37 ~~~~~~~~~~~~l~~le~~----L~~~~~l~G~-~~t~aDi~l~~~~~~~~~~----~~~----~~~~~p~l~~w~~~~~ 103 (113)
T cd03178 37 AIERYTNEAKRLYGVLDKR----LAGRDYLAGD-EYSIADIAIFPWVRRLEWI----GID----DLDDFPNVKRWLDRIA 103 (113)
T ss_pred HHHHHHHHHHHHHHHHHHH----HccCCcccCC-CCCeeeeeHHHHHHHHHhc----ccc----chhhchHHHHHHHHHh
Confidence 4456778899999999999 7788999999 9999999999988887532 211 1467999999999999
Q ss_pred cCCCC
Q 040484 190 ELPFV 194 (194)
Q Consensus 190 ~~p~~ 194 (194)
++|++
T Consensus 104 ~~p~~ 108 (113)
T cd03178 104 ARPAV 108 (113)
T ss_pred hCHHH
Confidence 99975
No 84
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.24 E-value=3.2e-11 Score=79.14 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhc
Q 040484 110 RQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFS 189 (194)
Q Consensus 110 ~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 189 (194)
..++...++.+.++.+|+. |++++|++|+ ++|+||+++++.+.+... .+. ..+.+|+|.+|++++.
T Consensus 30 ~~~~~~~~~~~~l~~le~~----L~~~~~l~G~-~~t~aDi~~~~~~~~~~~----~~~-----~~~~~p~l~~~~~~~~ 95 (100)
T cd03206 30 DKETAIARAHRLLRLLEEH----LAGRDWLAGD-RPTIADVAVYPYVALAPE----GGV-----DLEDYPAIRRWLARIE 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH----HccCCccCCC-CCCHHHHHHHHHHHHHhc----cCC-----ChhhCcHHHHHHHHHH
Confidence 4456788899999999999 7788999999 999999999988865421 121 2578999999999999
Q ss_pred cCCCC
Q 040484 190 ELPFV 194 (194)
Q Consensus 190 ~~p~~ 194 (194)
++|++
T Consensus 96 ~~p~~ 100 (100)
T cd03206 96 ALPGF 100 (100)
T ss_pred hCcCC
Confidence 99986
No 85
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.23 E-value=6.6e-11 Score=80.28 Aligned_cols=70 Identities=23% Similarity=0.170 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCC
Q 040484 113 RQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELP 192 (194)
Q Consensus 113 ~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 192 (194)
...+.+.+.|..+|+.|++ .+++|++|+ ++|+||+++++.+.+... .+.+ ...+|+|.+|++++.++|
T Consensus 44 ~~~~~~~~~l~~le~~L~~--~~~~~l~G~-~~t~ADi~~~~~~~~~~~----~~~~-----~~~~p~l~~w~~~~~~~p 111 (121)
T cd03191 44 WYRHWIARGFAALEKLLAQ--TAGKFCFGD-EPTLADICLVPQVYNARR----FGVD-----LSPYPTIARINEACLELP 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCCeecCC-cCCHHHHHHHHHHHHHHH----hCCC-----cccCcHHHHHHHHHHhCh
Confidence 3446688899999999421 145799999 999999999998877542 2332 578999999999999999
Q ss_pred CC
Q 040484 193 FV 194 (194)
Q Consensus 193 ~~ 194 (194)
+|
T Consensus 112 ~~ 113 (121)
T cd03191 112 AF 113 (121)
T ss_pred hH
Confidence 75
No 86
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.20 E-value=1.2e-10 Score=79.63 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhc
Q 040484 110 RQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFS 189 (194)
Q Consensus 110 ~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 189 (194)
......+.+.+.|..||+.|.++ ++++|++|+ ++|+||+++++.+.++...... . ...+|+|.+|++++.
T Consensus 32 ~~~~~~~~~~~~l~~le~~L~~~-~~~~~l~G~-~~T~ADi~l~~~~~~~~~~~~~------~--~~~~P~l~~~~~rv~ 101 (126)
T cd03210 32 GKDDYIKDLPEQLKPFEKLLSKN-NGKGFIVGD-KISFADYNLFDLLDIHLVLAPG------C--LDAFPLLKAFVERLS 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCCeeeCC-CccHHHHHHHHHHHHHHHhChH------h--hhcChHHHHHHHHHH
Confidence 34556677889999999995310 146899999 9999999999998887532111 1 578999999999999
Q ss_pred cCCCC
Q 040484 190 ELPFV 194 (194)
Q Consensus 190 ~~p~~ 194 (194)
++|+|
T Consensus 102 ~~p~v 106 (126)
T cd03210 102 ARPKL 106 (126)
T ss_pred hCcHH
Confidence 99975
No 87
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.18 E-value=7e-11 Score=80.26 Aligned_cols=72 Identities=14% Similarity=0.280 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhc
Q 040484 110 RQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFS 189 (194)
Q Consensus 110 ~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 189 (194)
..+.....+.+.++.||+. |++++|++|+ ++|+||+++++.+.++..... . . ...+|+|.+|++++.
T Consensus 32 ~~~~~~~~~~~~l~~le~~----L~~~~~l~G~-~~T~aDi~l~~~~~~~~~~~~----~--~--~~~~P~l~~~~~rv~ 98 (121)
T cd03209 32 LKPDYLAKLPDKLKLFSDF----LGDRPWFAGD-KITYVDFLLYEALDQHRIFEP----D--C--LDAFPNLKDFLERFE 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH----hCCCCCcCCC-CccHHHHHHHHHHHHHHHhCc----c--c--cccChHHHHHHHHHH
Confidence 3455677788899999999 7788999999 999999999999888753211 1 1 568999999999999
Q ss_pred cCCCC
Q 040484 190 ELPFV 194 (194)
Q Consensus 190 ~~p~~ 194 (194)
++|++
T Consensus 99 ~~p~v 103 (121)
T cd03209 99 ALPKI 103 (121)
T ss_pred HCHHH
Confidence 99874
No 88
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.16 E-value=2.3e-10 Score=79.39 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 115 VKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 115 ~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
...+.+.|+.||+.|.+ ++++|++|+ ++|+||+++++.+.++...... ....+|+|.+|++++.++|+|
T Consensus 41 ~~~~~~~l~~lE~~L~~--~~~~~l~G~-~~T~ADi~l~~~l~~~~~~~~~--------~l~~~P~l~~~~~rv~~~P~v 109 (137)
T cd03208 41 EKAKNRYFPVFEKVLKS--HGQDFLVGN-KLSRADIHLLEAILMVEELDPS--------LLSDFPLLQAFKTRISNLPTI 109 (137)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCeeeCC-CCCHHHHHHHHHHHHHHHhchh--------hhccChHHHHHHHHHHcCHHH
Confidence 34567899999999421 267899999 9999999999999887532111 157899999999999999974
No 89
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.14 E-value=3.2e-10 Score=69.88 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=50.4
Q ss_pred CCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhh
Q 040484 13 WFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDT 79 (194)
Q Consensus 13 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~ 79 (194)
..||+|.++.+.|+++|++|+++.... + ..+|. |++|+|+++|+.+.+|..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n----~---~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN----P---WRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC----C---CCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 367999999999999999998875431 1 23688 89999999999999999999999864
No 90
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.13 E-value=2.1e-10 Score=78.40 Aligned_cols=74 Identities=20% Similarity=0.420 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHh
Q 040484 109 ERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNF 188 (194)
Q Consensus 109 ~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 188 (194)
...+...+.+.+.++.+|+.+ +++++|++|+ ++|+||+++++.+.+... .+.+ . ...+|+|.+|++++
T Consensus 41 ~~~~~~~~~~~~~l~~le~~l---~~~~~~l~Gd-~~t~ADi~l~~~~~~~~~----~~~~--~--~~~~p~l~~w~~~~ 108 (126)
T cd03183 41 EKVKKAEENLEESLDLLENYF---LKDKPFLAGD-EISIADLSAVCEIMQPEA----AGYD--V--FEGRPKLAAWRKRV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hcCCCcccCC-CCCHHHHHHHHHHHHHHh----cCCc--c--cccCchHHHHHHHH
Confidence 344667788999999999974 4557899999 999999999988876642 2322 1 47899999999999
Q ss_pred cc--CCCC
Q 040484 189 SE--LPFV 194 (194)
Q Consensus 189 ~~--~p~~ 194 (194)
.+ +|++
T Consensus 109 ~~~~~p~~ 116 (126)
T cd03183 109 KEAGNPLF 116 (126)
T ss_pred HHhcchhH
Confidence 99 8874
No 91
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.4e-09 Score=76.86 Aligned_cols=160 Identities=13% Similarity=0.169 Sum_probs=113.5
Q ss_pred CCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCCCCCCCCCHHH
Q 040484 14 FSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHNPSILPQDPAE 93 (194)
Q Consensus 14 ~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~~l~p~~~~~ 93 (194)
...-|..+..+|++.++||.++.-+ +.++ .+|- |++|.|..|.++++|-.+|..+++...-.-.+.. +..+
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l--sE~q 103 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL--SEDQ 103 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecC----Cccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhccchhhhh--hhHH
Confidence 4456999999999999999988653 3333 5787 8999999999999999999999987753211011 3344
Q ss_pred HHHHHHHH------------------------------------------------------HHHhcccHHHHHHHHHHH
Q 040484 94 RAMAQVLR------------------------------------------------------NVIFSRGERQERQVKQIK 119 (194)
Q Consensus 94 ~~~~~~~~------------------------------------------------------~~~~~~~~~~~~~~~~~~ 119 (194)
++.++..+ +.+.-.....++..+...
T Consensus 104 kadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vd 183 (257)
T KOG3027|consen 104 KADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVD 183 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHH
Confidence 44444432 001113334567778888
Q ss_pred HHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHh-hhhhccccccCCcccchHHHHHHHhcc
Q 040484 120 DAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIG-EAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 120 ~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
..+..|... |+..+|+.|+ +||=+|..+++-+..+.... +..... .+ ..+|++|-++.+|+.+
T Consensus 184 kc~~aLsa~----L~~q~yf~g~-~P~elDAlvFGHlytilTt~Lpn~ela-~~--lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 184 KCCRALSAQ----LGSQPYFTGD-QPTELDALVFGHLYTILTTRLPNMELA-NI--LKKYSNLLEFCRRIEQ 247 (257)
T ss_pred HHHHHHHHH----hcCCCccCCC-CccHHHHHHHhhhHHhhhhcCCcHHHH-HH--HHHhHHHHHHHHHHHH
Confidence 888889888 8899999999 99999999999877764211 111110 01 5789999999999875
No 92
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.11 E-value=1.7e-10 Score=76.00 Aligned_cols=69 Identities=13% Similarity=0.251 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 111 QERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 111 ~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
.+.....+.+.++.||++ |++++|++|+ ++|+||+++++.+.+... .+ . ...+|+|.+|++++.+
T Consensus 28 ~~~~~~~~~~~l~~le~~----l~~~~~l~g~-~~t~aDi~~~~~~~~~~~----~~----~--~~~~p~l~~w~~~~~~ 92 (103)
T cd03207 28 RMAGFGSYDDVLAALEQA----LAKGPYLLGE-RFTAADVLVGSPLGWGLQ----FG----L--LPERPAFDAYIARITD 92 (103)
T ss_pred hhhhhhhHHHHHHHHHHH----HccCCcccCC-ccCHHHHHHHHHHHHHHH----cC----C--CCCChHHHHHHHHHHc
Confidence 455667799999999999 7788999999 999999999999988742 12 1 4679999999999999
Q ss_pred CCCC
Q 040484 191 LPFV 194 (194)
Q Consensus 191 ~p~~ 194 (194)
+|+|
T Consensus 93 ~p~~ 96 (103)
T cd03207 93 RPAF 96 (103)
T ss_pred CHHH
Confidence 9974
No 93
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.10 E-value=2.2e-10 Score=75.05 Aligned_cols=87 Identities=22% Similarity=0.298 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHH---H-------hcccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHH
Q 040484 91 PAERAMAQVLRNV---I-------FSRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLD 160 (194)
Q Consensus 91 ~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~ 160 (194)
+..++.+++|+.. + ...+...+...+.+.+.++.+++.|. ...++|++|+ +||+||+++++.+..+.
T Consensus 3 ~~~~a~i~~W~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~--~~~~~~l~G~-~~T~AD~~v~~~l~~~~ 79 (99)
T PF14497_consen 3 PYWRALIDRWLDFSVAFRRRKARLEKDEASGDFSREELPKALKILEKHLA--ERGGDFLVGD-KPTLADIAVFGFLASLR 79 (99)
T ss_dssp -TTHHHHHHHHH-GHCCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHH--HTSSSSSSSS-S--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccchhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHH--cCCCeeecCC-CCCHHHHHHHHHHHHHh
Confidence 4456677788761 1 11233457778889999999999964 2334499999 99999999999886654
Q ss_pred HHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 161 AIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
. . + . .+.+|+|.+|++||.+
T Consensus 80 ~-----~-~--~--~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 80 W-----A-D--F--PKDYPNLVRWYERIEE 99 (99)
T ss_dssp C-----C-H--H--TTTCHHHHHHHHHHHT
T ss_pred h-----c-c--c--ccccHHHHHHHHhhcC
Confidence 2 1 1 0 1589999999999974
No 94
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.10 E-value=5.7e-10 Score=68.90 Aligned_cols=69 Identities=23% Similarity=0.255 Sum_probs=59.2
Q ss_pred CceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEeCCeeeechHHHHH
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIE 74 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~ 74 (194)
.+++||+.+.||+|++++.+|+.+|++|+.+.++... ..+++.+.++. .++|++..||..|..-....+
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 3689999999999999999999999999999887643 35688889998 899999999998877665544
No 95
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.10 E-value=4.2e-10 Score=76.36 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHH---Hhc---ccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHh
Q 040484 90 DPAERAMAQVLRNV---IFS---RGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIG 163 (194)
Q Consensus 90 ~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~ 163 (194)
++..|+.+++|+.. +.. ...-.......+.+.++.||+.|+. .++++|++| ++|+||+++++.+.++....
T Consensus 1 d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Le~~L~~-~~~~~fl~G--~~tlADi~l~~~~~~~~~~~ 77 (120)
T cd03203 1 DPAKREFADELLAYTDAFTKALYSSLIKGDPSAEAAAALDYIENALSK-FDDGPFFLG--QFSLVDIAYVPFIERFQIFL 77 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh-cCCCCCcCC--CccHHHHHHHHHHHHHHHHH
Confidence 45678888888622 110 0000011133557788999998532 135899999 49999999999998775422
Q ss_pred -hhhhccccccCCcccchHHHHHHHhccCCCC
Q 040484 164 -EAAARTQIIFDSQKYTCWDKWTKNFSELPFV 194 (194)
Q Consensus 164 -~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 194 (194)
...+++ . .+.+|+|.+|++++.++|+|
T Consensus 78 ~~~~~~~--~--~~~~P~l~~W~~~~~~rp~~ 105 (120)
T cd03203 78 SELFNYD--I--TEGRPNLAAWIEEMNKIEAY 105 (120)
T ss_pred HHhcCcc--c--cccCcHHHHHHHHHhcchHH
Confidence 222333 2 36899999999999999875
No 96
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.08 E-value=4.1e-10 Score=74.24 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhc
Q 040484 110 RQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFS 189 (194)
Q Consensus 110 ~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 189 (194)
..+....++.+.++.||+. |++++|++|+ ++|+||+++++.+.++.. .+.+ ...+|+|.+|+++++
T Consensus 40 ~~~~~~~~~~~~l~~le~~----L~~~~~l~g~-~~slaDi~~~~~~~~~~~----~~~~-----~~~~p~l~~~~~~~~ 105 (105)
T cd03179 40 VLAFLRERGHAALAVLEAH----LAGRDFLVGD-ALTIADIALAAYTHVADE----GGFD-----LADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH----HccCccccCC-CCCHHHHHHHHHHHhccc----cCCC-----hHhCccHHHHHHhhC
Confidence 4467788899999999999 7788999999 999999999999988742 2322 567999999999874
No 97
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.08 E-value=4.5e-10 Score=76.64 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 111 QERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 111 ~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
.+.....+.+.++.+|++ |++++|+.|+ ++|+||+++++.+.+..... +.+ . .+.+|+|.+|+++|.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~----L~~~~fl~Gd-~~t~AD~~l~~~l~~~~~~~---~~~--~--~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRAT----LKGQPFLGGA-APNYADYIVFGGFQWARIVS---PFP--L--LEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHH----HcCCCccCCC-CCchhHHHHHHHHHHHHHcC---ccc--c--cccCChHHHHHHHHhc
Confidence 467788899999999999 7889999999 99999999999998875321 222 1 4689999999999976
Q ss_pred C
Q 040484 191 L 191 (194)
Q Consensus 191 ~ 191 (194)
.
T Consensus 124 ~ 124 (124)
T cd03202 124 L 124 (124)
T ss_pred C
Confidence 3
No 98
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.07 E-value=5.1e-10 Score=76.03 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHh
Q 040484 109 ERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNF 188 (194)
Q Consensus 109 ~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 188 (194)
...+.....+.+.++.||+. +++++|++|+ ++|+||+++++.+.+..... .+.. . ...+|++.+|++++
T Consensus 36 ~~~~~~~~~~~~~l~~le~~----l~~~~~l~G~-~~siaDi~l~~~~~~~~~~~--~~~~--~--~~~~p~l~~w~~~~ 104 (123)
T cd03181 36 KSVEAALEELDRVLGVLEER----LLKRTYLVGE-RLTLADIFVAGALLLGFTYV--FDKE--W--RAKYPNVTRWFNTV 104 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HccCceeccC-CccHHHHHHHHHHHHHHHHH--cCHH--H--HHhChHHHHHHHHH
Confidence 34566788899999999999 7788999999 99999999999998864211 1110 1 35799999999999
Q ss_pred ccCCCC
Q 040484 189 SELPFV 194 (194)
Q Consensus 189 ~~~p~~ 194 (194)
.++|+|
T Consensus 105 ~~~p~~ 110 (123)
T cd03181 105 VNQPIF 110 (123)
T ss_pred HcCHHH
Confidence 999864
No 99
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.05 E-value=9.1e-10 Score=69.27 Aligned_cols=61 Identities=16% Similarity=0.303 Sum_probs=49.5
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeee
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFS 67 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~ 67 (194)
+++||+.++||+|.+++-+|+.+||+|+.+.++-+....+....++. .++|+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEe
Confidence 68999999999999999999999999999999765322333344677 79999998886553
No 100
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.02 E-value=2.1e-09 Score=65.61 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=60.2
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEeCCeeeechHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEY 75 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~y 75 (194)
++++|+.++||+|++++.+|..++++|+.+.++... ..+++.+.++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 479999999999999999999999999988886653 35677788887 8999999999999999888764
No 101
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.00 E-value=2e-09 Score=69.93 Aligned_cols=70 Identities=24% Similarity=0.432 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHH
Q 040484 108 GERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKN 187 (194)
Q Consensus 108 ~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 187 (194)
+...+...+++.+.++.||+. |++++|++|+ ++|+||+++++.+.++.......+ ..+.+|++.+|+++
T Consensus 31 ~~~~~~~~~~~~~~~~~l~~~----L~~~~~~~g~-~~t~aDi~~~~~l~~~~~~~~~~~------~~~~~p~l~~~~~~ 99 (100)
T cd00299 31 EAALEEAREELAAALAALEKL----LAGRPYLAGD-RFSLADIALAPVLARLDLLGPLLG------LLDEYPRLAAWYDR 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HccCCCCCCC-CcCHHHHHHHHHHHHHHHhhhhhh------hhccCccHHHHHHh
Confidence 445677788899999999999 7788999999 999999999999999875433211 14679999999987
Q ss_pred h
Q 040484 188 F 188 (194)
Q Consensus 188 ~ 188 (194)
+
T Consensus 100 ~ 100 (100)
T cd00299 100 L 100 (100)
T ss_pred C
Confidence 5
No 102
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.99 E-value=1.2e-09 Score=69.90 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhc
Q 040484 111 QERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFS 189 (194)
Q Consensus 111 ~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 189 (194)
.....+.+.+.++.+|+. |++++|++|+ ++|+||+++++.+.++.......+.. ......+|+|.+|++++.
T Consensus 17 ~~~~~~~~~~~l~~le~~----L~~~~yl~Gd-~~t~aDi~l~~~l~~~~~~~~~~~~~--~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 17 TREIYSLAKKDLKALSDL----LGDKKFFFGD-KPTSLDATVFGHLASILYAPLPNSAL--QLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHH----hCCCCccCCC-CCCHHHHHHHHHHHHHHhcCCCChHH--HHHHHhCcHHHHHHHHhC
Confidence 346677899999999999 7888999999 99999999999998875311000000 001467999999999874
No 103
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.98 E-value=2.8e-09 Score=65.44 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=56.5
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEeCCeee--echHHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFHNEKCF--SESLVIIEYI 76 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~~~~i--~eS~~I~~yL 76 (194)
+++||+.++||+|++++.+|+..+++|..+.++... ..+++.+.++. ..+|++..+|+.+ .++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 389999999999999999999999999988776543 23456777887 8999999888777 5666666554
No 104
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.97 E-value=4.2e-09 Score=69.40 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC--ccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHH
Q 040484 109 ERQERQVKQIKDAMEVIEKVLMLELKG--KKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTK 186 (194)
Q Consensus 109 ~~~~~~~~~~~~~l~~le~~l~~~l~~--~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~ 186 (194)
.......+.+.+.++.||+. +++ ++|++|+ ++|+||+++++.+.++....... ....+|+|.+|++
T Consensus 35 ~~~~~~~~~~~~~l~~le~~----l~~~~~~~~~G~-~~s~aDi~l~~~~~~~~~~~~~~-------~~~~~p~l~~~~~ 102 (104)
T cd03192 35 KKKEFLKEAIPKYLKKLEKI----LKENGGGYLVGD-KLTWADLVVFDVLDYLLYLDPKL-------LLKKYPKLKALRE 102 (104)
T ss_pred HHHHHHHHhhHHHHHHHHHH----HHHcCCCeeeCC-CccHHHHHHHHHHHHHHhhCchh-------hHHhChhHHHHHH
Confidence 34566778889999999999 555 7999999 99999999999998885432211 1467999999998
Q ss_pred Hh
Q 040484 187 NF 188 (194)
Q Consensus 187 ~~ 188 (194)
++
T Consensus 103 ~~ 104 (104)
T cd03192 103 RV 104 (104)
T ss_pred hC
Confidence 75
No 105
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.94 E-value=6.6e-09 Score=64.31 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=58.0
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCC-CCchhhhhhCCCCC-cccEEEeCCeeeechHHHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT-NKSSLLLNSNPIYK-RIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~-~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
+++||+.+.||+|.+++-+|+..|++|+.+.++.. ...+++...... . ++|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHHh
Confidence 48999999999999999999999999999988764 223445444443 4 89999999999999988887643
No 106
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.93 E-value=4.3e-09 Score=64.46 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=52.9
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEeCCeeeec
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFHNEKCFSE 68 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~~~~i~e 68 (194)
++++|+.++||+|++++.+|...+++|..+.++... ..+++.+.++. +++|+|.++|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEec
Confidence 479999999999999999999999999999887642 34577888898 899999988876644
No 107
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2e-08 Score=62.95 Aligned_cols=69 Identities=16% Similarity=0.255 Sum_probs=55.6
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC--Cc-hhhhhhCCCCCcccEEEeCCeeeechHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN--KS-SLLLNSNPIYKRIPVLFHNEKCFSESLVIIEY 75 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~--~~-~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~y 75 (194)
.+++|+.+.||||.++.-+|..+|++|+++.++... .. +.....++. .+||++..||..+.....+.++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 589999999999999999999999999999998765 33 334445577 8999999999877655444443
No 108
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.2e-07 Score=70.23 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=106.6
Q ss_pred CCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEE-eCCeeeechHHHHHHHHhhcCCCCCCCCC-C
Q 040484 13 WFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF-HNEKCFSESLVIIEYIDDTWKHNPSILPQ-D 90 (194)
Q Consensus 13 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~~~~~l~p~-~ 90 (194)
..++-|.++.+.+++.+.|.+++..+.. + .+|. |++|+|+ ++|..++.-..|..+|.....+.. +-+. .
T Consensus 15 tid~~sL~~l~y~kl~~~~l~v~~ssN~----~---~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~-~d~dl~ 85 (313)
T KOG3028|consen 15 TIDPDSLAALIYLKLAGAPLKVVVSSNP----W---RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYN-LDADLS 85 (313)
T ss_pred CcChhHHHHHHHHHHhCCCceeEeecCC----C---CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCC-cCccHH
Confidence 4788999999999999977776655322 2 2677 8999999 566999999999999987533221 2111 1
Q ss_pred HHHHHHHHHHH---------------------------HHH---------------------------hc-ccHHHHHHH
Q 040484 91 PAERAMAQVLR---------------------------NVI---------------------------FS-RGERQERQV 115 (194)
Q Consensus 91 ~~~~~~~~~~~---------------------------~~~---------------------------~~-~~~~~~~~~ 115 (194)
..+.+....|. +.+ .+ ......+..
T Consensus 86 ~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~ 165 (313)
T KOG3028|consen 86 AKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIY 165 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHH
Confidence 33333333332 000 01 111235556
Q ss_pred HHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHH-HHHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 116 KQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWL-DAIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 116 ~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
....++++.|... +++.+|+.|+ +||--|+.++..+..+ ....+.-... .+ ...+++|.++++++.+
T Consensus 166 ~~Aska~~~LS~~----Lgs~kffFgd-~psslDa~lfs~la~~~~~~Lp~~~Lq--~~-l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 166 KDASKALNLLSTL----LGSKKFFFGD-KPSSLDALLFSYLAILLQVALPNDSLQ--VH-LLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHHH----hcCceEeeCC-CCchHHHHHHHHHHHHHhccCCchhHH--HH-HHhcchHHHHHHHHHH
Confidence 6777788888888 8999999999 9999999999988883 2111110000 11 3349999999998865
No 109
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.83 E-value=2.3e-08 Score=62.61 Aligned_cols=70 Identities=13% Similarity=0.230 Sum_probs=59.1
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ..+++.+.+.. ..+|++..+|..+.+...+.++-.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHH
Confidence 58999999999999999999999999999997653 34566666666 799999999999988888877654
No 110
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.82 E-value=1.9e-08 Score=68.73 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHH-hh--hhhccccccCCcccchHHHH
Q 040484 108 GERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAI-GE--AAARTQIIFDSQKYTCWDKW 184 (194)
Q Consensus 108 ~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~-~~--~~~~~~~~~~~~~~p~l~~~ 184 (194)
....++......+.++.|+.. |++++|++|+ +||.+|+++++.+.++... .+ .++.. ...+|+|.+|
T Consensus 52 r~~~ee~~~~~~~~l~aLs~~----Lg~~~~l~Gd-~pT~~Da~vf~~la~~~~~~~~~~~l~~~-----~~~~pnL~~y 121 (126)
T cd03211 52 DKTLDQVIEEVDQCCQALSQR----LGTQPYFFGD-QPTELDALVFGHLFTILTTQLPNDELAEK-----VKKYSNLLAF 121 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHH----HCCCCCCCCC-CCcHHHHHHHHHHHHHHhcCCCChHHHHH-----HHhCcHHHHH
Confidence 335677888899999999999 8899999999 9999999999998887532 10 11211 5689999999
Q ss_pred HHHhc
Q 040484 185 TKNFS 189 (194)
Q Consensus 185 ~~~~~ 189 (194)
++||.
T Consensus 122 ~~Ri~ 126 (126)
T cd03211 122 CRRIE 126 (126)
T ss_pred HHhcC
Confidence 99974
No 111
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.81 E-value=2.8e-08 Score=61.68 Aligned_cols=70 Identities=9% Similarity=0.197 Sum_probs=54.0
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCC-chhhhhhC-CCCCcccEEE-eCCeeeech--HHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNK-SSLLLNSN-PIYKRIPVLF-HNEKCFSES--LVIIEYI 76 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~-p~~~~vP~L~-~~~~~i~eS--~~I~~yL 76 (194)
+++||+.++||+|++++.+|...|++|+.+.++-... .+.+.+.+ +. ..+|+++ ++|..+.++ ..|..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 4799999999999999999999999999887765432 35566676 77 7999997 577776554 3455544
No 112
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.81 E-value=1.1e-08 Score=68.64 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhC-CccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 112 ERQVKQIKDAMEVIEKVLMLELK-GKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 112 ~~~~~~~~~~l~~le~~l~~~l~-~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
+.....+.+.++.+|.. ++ +++|++|+ +|+||+++++.+.|... .+.+ .. |++.+|.+++.+
T Consensus 41 ~~~~~~~~~~~~~le~~----l~~~~~~l~G~--fSiAD~~l~~~~~~~~~----~g~~-----l~--p~l~ay~~r~~~ 103 (114)
T cd03195 41 EAAQAAAEKLIAVAEAL----LPPGAANLFGE--WCIADTDLALMLNRLVL----NGDP-----VP--ERLRDYARRQWQ 103 (114)
T ss_pred HHHHHHHHHHHHHHHHH----HhcCCCcccCC--ccHHHHHHHHHHHHHHH----cCCC-----CC--HHHHHHHHHHHC
Confidence 45677778888888888 64 55899995 99999999999998753 3544 43 999999999999
Q ss_pred CCCC
Q 040484 191 LPFV 194 (194)
Q Consensus 191 ~p~~ 194 (194)
||+|
T Consensus 104 rPa~ 107 (114)
T cd03195 104 RPSV 107 (114)
T ss_pred CHHH
Confidence 9975
No 113
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.80 E-value=1.1e-08 Score=60.51 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=51.1
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC-CCchhhhhhCCCCCcccEEEeCCeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT-NKSSLLLNSNPIYKRIPVLFHNEKCF 66 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~~~~i 66 (194)
+++|+.++||+|.+++-+|+..|++|+.+.++.. ...+++.+.+.. .++|++..||+.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5899999999999999999999999999999887 445677777666 7999999988764
No 114
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.78 E-value=7.8e-08 Score=62.85 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=59.0
Q ss_pred CCceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCch----hhhhhCCCCCcccEEEeCCeeeechHHHHHH
Q 040484 4 QAEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSS----LLLNSNPIYKRIPVLFHNEKCFSESLVIIEY 75 (194)
Q Consensus 4 ~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~y 75 (194)
..++++|+.++||||.+++-+|...|++|+.+.++...... .+...+.. .++|.+..+|+.|.....+...
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 56899999999999999999999999999999998653322 34555666 7999999999999888777664
No 115
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.78 E-value=2.2e-08 Score=67.28 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 111 QERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 111 ~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
.+...+.+.+.++.+|..+.. +++++|++|+ +|+||+++++.+.+... .+.+ . .|+|.+|++++.+
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~-~~~~~yl~Gd--~T~ADi~l~~~~~~~~~----~~~~-----~--~P~l~~~~~rv~~ 104 (114)
T cd03194 39 SEAVQADIARIEAIWAECLAR-FQGGPFLFGD--FSIADAFFAPVVTRFRT----YGLP-----L--SPAAQAYVDALLA 104 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCC--CcHHHHHHHHHHHHHHH----cCCC-----C--CHHHHHHHHHHHC
Confidence 355566677777777777432 4578899997 99999999999888742 2322 2 3999999999999
Q ss_pred CCCC
Q 040484 191 LPFV 194 (194)
Q Consensus 191 ~p~~ 194 (194)
+|+|
T Consensus 105 rPsv 108 (114)
T cd03194 105 HPAM 108 (114)
T ss_pred CHHH
Confidence 9874
No 116
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.77 E-value=2.7e-08 Score=61.17 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=45.6
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCe
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEK 64 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~ 64 (194)
+++|+.+.||+|++++-+|+.+|++|+.+.++-.....+.....+. ..+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999988765433333334466 68999997654
No 117
>PHA03050 glutaredoxin; Provisional
Probab=98.77 E-value=8e-08 Score=63.72 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=59.2
Q ss_pred CCceEEeecCCCchHHHHHHHHHHhCC---cceEEEccCCCC----chhhhhhCCCCCcccEEEeCCeeeechHHHHH
Q 040484 4 QAEVKLLGRWFSVFSVRVEWALKLKGI---KYVKIEEDTTNK----SSLLLNSNPIYKRIPVLFHNEKCFSESLVIIE 74 (194)
Q Consensus 4 ~~~~~Ly~~~~~p~~~~~~~~l~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~ 74 (194)
..++++|+.++||||.+++-+|+..|+ +|+++.++-... .+++.+.+.. .+||.+..||+.|.....+..
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 468999999999999999999999999 898988875322 4567777777 799999999999988877766
No 118
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.75 E-value=9.7e-08 Score=60.02 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=61.3
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCc----hhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHh
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKS----SLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDD 78 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~ 78 (194)
++++|+.++||+|.+++-+|...+++|+.+.++..... ..+.+.+.. .++|.+..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999999876532 345566666 7899999999999999999888653
No 119
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.74 E-value=8.9e-08 Score=60.81 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=61.8
Q ss_pred ceEEeecCCCchHHHHHHHHHH-----hCCcceEEEccCCC-CchhhhhhCC--CCCcccEEEeCCeeeechHHHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALKL-----KGIKYVKIEEDTTN-KSSLLLNSNP--IYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~p--~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
++++|+.++||+|.+++-+|+. .|++|+.+.++... ..+++..... . ..+|++..||+.+.+...|..++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV-ETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC-CcCCEEEECCEEEcCHHHHHHHHH
Confidence 6899999999999999999999 89999999887542 1334554432 2 479999999999999999999998
Q ss_pred hhcC
Q 040484 78 DTWK 81 (194)
Q Consensus 78 ~~~~ 81 (194)
+.++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 7754
No 120
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.73 E-value=2.9e-08 Score=68.96 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhcc
Q 040484 113 RQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSE 190 (194)
Q Consensus 113 ~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 190 (194)
..+..+..+++.+-+.+ .++++|+.|+ +||+||+++++.+..+.... ++. +...+|+|.+|+++|.+
T Consensus 79 D~r~~L~~a~~~w~~~~---~~~~~FlaGd-~ptIADisvyg~l~s~e~~~---~~~----Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 79 DVREWLYDALNTWVAAL---GKDRQFHGGS-KPNLADLAVYGVLRSVEGHP---AFK----DMVEETKIGEWYERMDA 145 (149)
T ss_pred hHHHHHHHHHHHHHHHh---cCCCCccCCC-CCCHHHHHHHHHHHHHHHhc---ccc----chhhCcCHHHHHHHHHH
Confidence 34556666666665553 4567899999 99999999999998875422 330 26789999999999975
No 121
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.67 E-value=7.9e-08 Score=62.69 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHH
Q 040484 108 GERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKN 187 (194)
Q Consensus 108 ~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 187 (194)
+...+....++.+.+..+|++ |++++| + ++|+||+++++.+.+...... +.+ ....+|+|.+|+++
T Consensus 32 ~~~~~~~~~~~~~~l~~le~~----L~~~~~---d-~~TlADi~l~~~l~~~~~~~~--~~~----~~~~~p~l~~w~~r 97 (98)
T cd03205 32 QPWLERQRGKIERALDALEAE----LAKLPL---D-PLDLADIAVACALGYLDFRHP--DLD----WRAAHPALAAWYAR 97 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHh----hhhCCC---C-CCCHHHHHHHHHHHHHHhHcc--Ccc----hhhhChHHHHHHHh
Confidence 344577788999999999999 777888 7 899999999999998853211 211 14689999999988
Q ss_pred h
Q 040484 188 F 188 (194)
Q Consensus 188 ~ 188 (194)
|
T Consensus 98 m 98 (98)
T cd03205 98 F 98 (98)
T ss_pred C
Confidence 5
No 122
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.66 E-value=2.4e-07 Score=58.99 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=58.0
Q ss_pred eEEeecCCCchHHHHHHHHHHhC-----CcceEEEccCCC-CchhhhhhCCC-CCcccEEEeCCeeeechHHHHHHHHhh
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKG-----IKYVKIEEDTTN-KSSLLLNSNPI-YKRIPVLFHNEKCFSESLVIIEYIDDT 79 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~-~~~vP~L~~~~~~i~eS~~I~~yL~~~ 79 (194)
+++|+.++||+|.+++-+|..++ ++|+.+.++... ..+++...... ...||++..||..+.++..|..++.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 68999999999999999999984 567777776432 13345444331 048999999999999999999998876
Q ss_pred cC
Q 040484 80 WK 81 (194)
Q Consensus 80 ~~ 81 (194)
+.
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 54
No 123
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.61 E-value=1.1e-07 Score=65.88 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHH-hhhhhccccccCCcccchHHHHHHHh
Q 040484 110 RQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAI-GEAAARTQIIFDSQKYTCWDKWTKNF 188 (194)
Q Consensus 110 ~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~p~l~~~~~~~ 188 (194)
..++......+.++.|++. |++++|++|+ ++|.+|+.+++.+..+... .+..... . ....+|+|.+|++|+
T Consensus 61 ~~~~~~~~a~~~l~~l~~~----L~~~~~~~Gd-~~t~~D~~~~~~l~~~~~~~~~~~~l~--~-~~~~~pnL~~~~~ri 132 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQR----LGESQFFFGD-TPTSLDALVFGYLAPLLKAPLPNNKLQ--N-HLKQCPNLCRFCDRI 132 (137)
T ss_pred hHHHHHHHHHHHHHHHHHH----HCCCCcCCCC-CCcHHHHHHHHHHHHHHhccCCChHHH--H-HHHHCcHHHHHHHHH
Confidence 4567778888899999999 8899999999 9999999999888776421 1100100 0 156899999999999
Q ss_pred cc
Q 040484 189 SE 190 (194)
Q Consensus 189 ~~ 190 (194)
.+
T Consensus 133 ~~ 134 (137)
T cd03212 133 LS 134 (137)
T ss_pred HH
Confidence 75
No 124
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.61 E-value=3e-07 Score=59.87 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=58.0
Q ss_pred CCceEEeec-----CCCchHHHHHHHHHHhCCcceEEEccCC-CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHH
Q 040484 4 QAEVKLLGR-----WFSVFSVRVEWALKLKGIKYVKIEEDTT-NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYI 76 (194)
Q Consensus 4 ~~~~~Ly~~-----~~~p~~~~~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL 76 (194)
.+++.+|.. +.||||.+++-+|..+|++|+.+.++-. ....++...+.. .++|.+..||..|.....+....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 468899965 8999999999999999999998888533 223456667776 79999999999988887777643
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.53 E-value=1e-06 Score=55.50 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=58.1
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCc--ceEEEccCCCCch----hhhhhCCCCCcccEEEeCCeeeechHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIK--YVKIEEDTTNKSS----LLLNSNPIYKRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
+++|+.++||+|++++-+|...+++ |+.+.++...... .+.+.... .++|.+..+|..+.++..+.++..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHH
Confidence 5789999999999999999999999 8888887764332 35555666 689999999999999988888764
No 126
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.53 E-value=7.2e-07 Score=57.25 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=59.2
Q ss_pred CCceEEeec-----CCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEeCCeeeechHHHHHHH
Q 040484 4 QAEVKLLGR-----WFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYI 76 (194)
Q Consensus 4 ~~~~~Ly~~-----~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL 76 (194)
..++.+|.. ++||||.+++-+|...|++|+.+.++... ...++.+.+.. .++|.+..||..|.+...+....
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 467889965 79999999999999999999999986542 23466667776 79999999999999888887754
No 127
>PRK10824 glutaredoxin-4; Provisional
Probab=98.23 E-value=8.8e-06 Score=54.37 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=58.2
Q ss_pred CCceEEeec-----CCCchHHHHHHHHHHhCCcceEEEccCC-CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHH
Q 040484 4 QAEVKLLGR-----WFSVFSVRVEWALKLKGIKYVKIEEDTT-NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEY 75 (194)
Q Consensus 4 ~~~~~Ly~~-----~~~p~~~~~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~y 75 (194)
..++.+|.- |.||||.++.-+|...|++|..+.++-. .-...+...+.. .+||-+..||+.|.....+...
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 357888865 6999999999999999999999888654 224566777776 7999999999999988877775
No 128
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.19 E-value=7.9e-06 Score=66.71 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=54.7
Q ss_pred CCceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhh-h--------hCCCCCcccEEEeCCeeeechHHHHH
Q 040484 4 QAEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLL-N--------SNPIYKRIPVLFHNEKCFSESLVIIE 74 (194)
Q Consensus 4 ~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~-~--------~~p~~~~vP~L~~~~~~i~eS~~I~~ 74 (194)
|+++++|+.++||+|.++.-+|...||+|+.+.++-.....++. . .+.. .+||++..||..+.+-..+..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 45799999999999999999999999999999997433222322 1 1344 689999999988877766655
No 129
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.07 E-value=2.7e-05 Score=54.38 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=56.2
Q ss_pred ceEEeecC------CCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCC----CCCcccEEEeCCeeeechHHHHH
Q 040484 6 EVKLLGRW------FSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNP----IYKRIPVLFHNEKCFSESLVIIE 74 (194)
Q Consensus 6 ~~~Ly~~~------~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p----~~~~vP~L~~~~~~i~eS~~I~~ 74 (194)
+++||..+ ++|+|++++-+|+.++|+|+++.|+... ..+++.+... . .++|.+..+|..|.....+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 47899998 9999999999999999999999998652 2455655532 2 589999999999988877776
Q ss_pred H
Q 040484 75 Y 75 (194)
Q Consensus 75 y 75 (194)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 4
No 130
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.8e-05 Score=50.34 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=61.0
Q ss_pred CCCceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhh----hhhCCCCCcccEEEeCCeeeechHHHHHHH
Q 040484 3 EQAEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLL----LNSNPIYKRIPVLFHNEKCFSESLVIIEYI 76 (194)
Q Consensus 3 ~~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~----~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL 76 (194)
...++..|+-.+||||+++.-+|...++++.++++|-.....++ ....-. .++|.+..+|+.|.....++.+-
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHH
Confidence 35689999999999999999999999999999999987544443 334555 68999999999999998888763
No 131
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.97 E-value=5e-05 Score=46.45 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=47.5
Q ss_pred CCchHHHHHHHHHHhCCc---ceEEEccCCCCchhhhhhCCCCCcccEEEe-CCeeeechHHHHHHH
Q 040484 14 FSVFSVRVEWALKLKGIK---YVKIEEDTTNKSSLLLNSNPIYKRIPVLFH-NEKCFSESLVIIEYI 76 (194)
Q Consensus 14 ~~p~~~~~~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~~~~i~eS~~I~~yL 76 (194)
.+|-|-.+.+.|++.+.+ |+++..+- +. .+|. |++|+|.+ +++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n----~~---~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN----PW---LSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC----CC---cCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 688999999999999999 77776632 22 4898 89999998 899999999999997
No 132
>PTZ00062 glutaredoxin; Provisional
Probab=97.81 E-value=0.00012 Score=54.04 Aligned_cols=71 Identities=21% Similarity=0.167 Sum_probs=57.3
Q ss_pred CCceEEeec-----CCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEeCCeeeechHHHHHH
Q 040484 4 QAEVKLLGR-----WFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEY 75 (194)
Q Consensus 4 ~~~~~Ly~~-----~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~y 75 (194)
..++.||.- |.||||+++.-+|...|++|....++-+. ..+.+++.+.. .++|.+..||+.|.+...+.+.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 457888855 68999999999999999999988886442 23566677776 7999999999999888777764
No 133
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.81 E-value=0.00013 Score=43.82 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=41.5
Q ss_pred ceEEeecCCCchHHHHHHHHHHh-----CCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeee
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLK-----GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFS 67 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~ 67 (194)
++++|+.++||+|.++.-+++.. ++.|..+.+ .. .+++.+.... ..+|++..+|+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~--~~-~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDA--AE-FPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEc--cc-CHhHHHHcCC-cccCEEEECCEEEE
Confidence 57899999999999999998865 455554444 33 2344444445 57999998887654
No 134
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=97.70 E-value=0.00018 Score=47.46 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccC
Q 040484 112 ERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSEL 191 (194)
Q Consensus 112 ~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 191 (194)
+.....+.+.+...+..+ -.+++||.|+ .|+||..++++++++.. +| ..--+.+..|.++.-++
T Consensus 42 ~~a~~~a~kL~~~a~~ll---~~g~~~LFGe--wsIAD~dlA~ml~Rl~~----~g-------d~vP~~l~~Ya~~qwqr 105 (117)
T PF14834_consen 42 EAAQAAAQKLIAVAERLL---ADGGPNLFGE--WSIADADLALMLNRLVT----YG-------DPVPERLADYAERQWQR 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHT---TT--SSTTSS----HHHHHHHHHHHHHHT----TT-----------HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHh---ccCCCCcccc--chHHHHHHHHHHHHHHH----cC-------CCCCHHHHHHHHHHHCC
Confidence 555666667777777763 2467999998 99999999999999863 12 22345566666666665
Q ss_pred CC
Q 040484 192 PF 193 (194)
Q Consensus 192 p~ 193 (194)
|+
T Consensus 106 ps 107 (117)
T PF14834_consen 106 PS 107 (117)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 135
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00032 Score=42.35 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=47.6
Q ss_pred CCceEEeecCCCchHHHHHHHHHHhCCcceEEEccCC-----------CCchhhhhh--CCCCCcccEEE-eCCeeee
Q 040484 4 QAEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT-----------NKSSLLLNS--NPIYKRIPVLF-HNEKCFS 67 (194)
Q Consensus 4 ~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~-----------~~~~~~~~~--~p~~~~vP~L~-~~~~~i~ 67 (194)
|++.+||+...||-|....-.|+-.+++|+.+.+.-. +..++|-.. |.+ --+|+|. +||+++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 3467999999999999999999999999999988643 334455432 443 4699888 6666654
No 136
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.22 E-value=0.0006 Score=45.42 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=31.4
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT 40 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 40 (194)
++||+.+.||+|++++-+|+.+|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 5899999999999999999999999999988654
No 137
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.17 E-value=0.00063 Score=44.79 Aligned_cols=33 Identities=21% Similarity=0.125 Sum_probs=30.8
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDT 39 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~ 39 (194)
+++|+.+.||+|++++-+|+.+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 589999999999999999999999999998854
No 138
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.09 E-value=0.00091 Score=45.93 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=31.5
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT 40 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 40 (194)
+++|+.+.||+|++++-+|...||+|+.+.+.-.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCC
Confidence 8999999999999999999999999999988543
No 139
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.00069 Score=56.00 Aligned_cols=113 Identities=12% Similarity=0.203 Sum_probs=77.6
Q ss_pred ccEEEeCCeeeechHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 040484 56 IPVLFHNEKCFSESLVIIEYIDDTWKHNPSILPQDPAERAMAQVLRNVIFSRGERQERQVKQIKDAMEVIEKVLMLELKG 135 (194)
Q Consensus 56 vP~L~~~~~~i~eS~~I~~yL~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~ 135 (194)
++.+.-+|..+..+..+..|..........|++.+ .++++++.|+..-.. .....+...+..++.. |.-
T Consensus 38 ~~~~~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~------~~~~~~s~~~~~ld~~----l~~ 106 (712)
T KOG1147|consen 38 VDKQFLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST------FSFDEISSSLSELDKF----LVL 106 (712)
T ss_pred hhhhccccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh------cchHHHHHHHHHHHhh----hhH
Confidence 44333456677777777777765544444488877 889999999955332 3345577788888888 778
Q ss_pred ccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHH
Q 040484 136 KKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTK 186 (194)
Q Consensus 136 ~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~ 186 (194)
..||+|. ++|+||++++..+..-....+.+.. ...+-++.+|++
T Consensus 107 ~t~lvg~-sls~Ad~aiw~~l~~n~~~~~~lk~------~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 107 RTFLVGN-SLSIADFAIWGALHSNGMRQEQLKA------KKDYQNVERWYD 150 (712)
T ss_pred HHHhhcc-chhHHHHHHHHHHhcccchHHHHHh------hCCchhhhhhcC
Confidence 8999999 9999999999988763222222221 245667777776
No 140
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.96 E-value=0.0059 Score=37.63 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=40.8
Q ss_pred ceEEeecCCCchHHHH----HHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeee
Q 040484 6 EVKLLGRWFSVFSVRV----EWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFS 67 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~ 67 (194)
.+++|. ++||.|..+ .-+++..|+.++.+.|+ + .++..+.+ . ..+|++..||+.+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~-v-~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAG-V-TATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcC-C-CcCCEEEECCEEEE
Confidence 477777 999999999 66778888888888886 2 23333334 3 57999998876553
No 141
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.96 E-value=0.0014 Score=43.91 Aligned_cols=33 Identities=12% Similarity=-0.054 Sum_probs=31.0
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDT 39 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~ 39 (194)
+++|+.+.|++|++++-+|+..|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 799999999999999999999999999998843
No 142
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.007 Score=38.89 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=53.9
Q ss_pred CCceEEe-----ecCCCchHHHHHHHHHHhC-CcceEEEccCC-CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHH
Q 040484 4 QAEVKLL-----GRWFSVFSVRVEWALKLKG-IKYVKIEEDTT-NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEY 75 (194)
Q Consensus 4 ~~~~~Ly-----~~~~~p~~~~~~~~l~~~g-i~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~y 75 (194)
..++.|| .+|.|+|+.++--+|..+| ++|..+.|-.+ .-+..++..+-. -++|-|-.+|..+..|..|.+-
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em 91 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREM 91 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHH
Confidence 3578888 4789999999999999999 56665555333 224455666766 7999999999999998877664
No 143
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.89 E-value=0.0016 Score=43.81 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=30.5
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDT 39 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~ 39 (194)
+++|+.+.||+|++++-+|+..|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 589999999999999999999999999988854
No 144
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.87 E-value=0.0056 Score=38.24 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=41.6
Q ss_pred ceEEeecCCCchHHHHHHHHHHh--CCcceEEEccCCCCchhhhhhCCCCCcccEEEeCC
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLK--GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNE 63 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~--gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~ 63 (194)
+++||+-+.|+.|..+.-+|... ..+++...||... .+++....- -.+|+|..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~-d~~l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE-DPELFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT-THHHHHHSC--TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC-CHHHHHHhc--CCCCEEEEcC
Confidence 47999999999999999999954 4667788888775 445555544 3799999766
No 145
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.86 E-value=0.0069 Score=37.47 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=40.7
Q ss_pred ceEEeecCCCchHHHHHHHHHH----hCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCe
Q 040484 6 EVKLLGRWFSVFSVRVEWALKL----KGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEK 64 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~ 64 (194)
++++|+.++||+|..+.-.++. .+..+....||.....+. .+.... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~-~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK-AMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH-HHHcCC-ccCCEEEECCE
Confidence 4789999999999998888764 354566677776653433 333444 57999997765
No 146
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=96.74 E-value=0.0018 Score=44.31 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHh
Q 040484 109 ERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNF 188 (194)
Q Consensus 109 ~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 188 (194)
++..+...++...|..||.. +..... ++. ++|+-|+.+++.|+.+.... | .+=-|++.+|+++|
T Consensus 55 ~~t~~~i~~l~~~L~~Le~l----l~~~~~-~n~-~LS~dDi~lFp~LR~Ltivk---g-------i~~P~~V~~Y~~~~ 118 (132)
T PF04399_consen 55 AKTPELIAELNADLEELEPL----LASPNA-VNG-ELSIDDIILFPILRSLTIVK---G-------IQWPPKVRAYMDRM 118 (132)
T ss_dssp HCHHHHHHHHHHHHHHHHHH-----SCTTB-TTS-S--HHHHHHHHHHHHHCTCT---T-------S---HHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHH----hccccc-cCC-CCCHHHHHHHHHHhhhhhcc---C-------CcCCHHHHHHHHHH
Confidence 34467788888888899988 554433 444 69999999999999985432 2 23348999999999
Q ss_pred ccCC
Q 040484 189 SELP 192 (194)
Q Consensus 189 ~~~p 192 (194)
.+..
T Consensus 119 s~~t 122 (132)
T PF04399_consen 119 SKAT 122 (132)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8653
No 147
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.72 E-value=0.0042 Score=42.65 Aligned_cols=34 Identities=15% Similarity=0.014 Sum_probs=31.6
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT 40 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 40 (194)
+++|+.+.|+.|++++-+|+..|++|+.+.+.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 8999999999999999999999999999988544
No 148
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=96.70 E-value=0.0053 Score=41.73 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHHHHHHhhhhhccccccCCcccchHHHHHHHhccC
Q 040484 112 ERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIWLDAIGEAAARTQIIFDSQKYTCWDKWTKNFSEL 191 (194)
Q Consensus 112 ~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 191 (194)
.+...++...|..++.. +..... .+. ++|+-|+.+++.|+.+..+. | .+=-|++.+|+++|++.
T Consensus 59 ~~~i~~l~~~L~~l~~l----l~~~~~-~n~-~ls~DDi~lFp~LR~Lt~vk---g-------i~~P~~V~~Y~~~~s~~ 122 (128)
T cd03199 59 PQYIAALNALLEELDPL----ILSSEA-VNG-QLSTDDIILFPILRNLTLVK---G-------LVFPPKVKAYLERMSAL 122 (128)
T ss_pred HHHHHHHHHHHHHHHHH----HcCccc-cCC-cCCHHHHHHHHHHhhhhhhc---C-------CCCCHHHHHHHHHHHHH
Confidence 46677788888888888 533333 455 69999999999999987533 2 22348999999999886
Q ss_pred CCC
Q 040484 192 PFV 194 (194)
Q Consensus 192 p~~ 194 (194)
-.|
T Consensus 123 t~V 125 (128)
T cd03199 123 TKV 125 (128)
T ss_pred hCC
Confidence 543
No 149
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.68 E-value=0.018 Score=36.95 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=50.8
Q ss_pred eEEeecCCCc------hHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhC----CCCCcccEEEeCCeeeechHHHHH
Q 040484 7 VKLLGRWFSV------FSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSN----PIYKRIPVLFHNEKCFSESLVIIE 74 (194)
Q Consensus 7 ~~Ly~~~~~p------~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~~vP~L~~~~~~i~eS~~I~~ 74 (194)
+++|+...++ .|++++.+|.-+||+|+++.|+.+. ...++.+.. +. ..+|-+..|+..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 6788776554 5788899999999999999998753 234555443 33 689999999999988866655
No 150
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.63 E-value=0.0056 Score=42.08 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=31.6
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT 40 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 40 (194)
+++|+.+.|+.|++++-+|+..|++|+.+.+.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 7999999999999999999999999999988643
No 151
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.50 E-value=0.0069 Score=39.88 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=30.7
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDT 39 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~ 39 (194)
+++|+.+.|+.|++++-+|+..|++|+++.+.-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 589999999999999999999999999998854
No 152
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.48 E-value=0.019 Score=36.54 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=39.6
Q ss_pred ceEEeecCCCchHHHHHHHHHHh-----CCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeee
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLK-----GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFS 67 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~ 67 (194)
.+++|..++||+|..+.-++... ++.+. .+|.... ++....... ..+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~--~vd~~~~-~e~a~~~~V-~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHE--MIDGALF-QDEVEERGI-MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEE--EEEhHhC-HHHHHHcCC-ccCCEEEECCEEEE
Confidence 68899999999999998887765 34444 4444443 333334444 57999998876544
No 153
>PRK10026 arsenate reductase; Provisional
Probab=96.42 E-value=0.006 Score=42.33 Aligned_cols=34 Identities=9% Similarity=-0.103 Sum_probs=31.6
Q ss_pred CceEEeecCCCchHHHHHHHHHHhCCcceEEEcc
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEED 38 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 38 (194)
+.+++|+.+.|.-|++++-+|+.+|++|+++.+-
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 5699999999999999999999999999999873
No 154
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.32 E-value=0.0068 Score=40.47 Aligned_cols=33 Identities=12% Similarity=-0.069 Sum_probs=30.7
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDT 39 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~ 39 (194)
++||+.+.|+-|++++-+|+.+|++|+++.+--
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhc
Confidence 799999999999999999999999999998743
No 155
>PHA02125 thioredoxin-like protein
Probab=96.26 E-value=0.021 Score=34.98 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=38.3
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeC
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHN 62 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~ 62 (194)
+.+|+.++|+.|+.+.-.|+ ++.+....||.+. ..++...... ..+|++.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~~g 53 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLVNT 53 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEECC
Confidence 78999999999999887775 4567777776554 4455555555 689999843
No 156
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.96 E-value=0.023 Score=32.29 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=35.6
Q ss_pred eEEeecCCCchHHHHHHHHH-----HhCCcceEEEccCCCCchhhhhhCCCCCcccEEEe
Q 040484 7 VKLLGRWFSVFSVRVEWALK-----LKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFH 61 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 61 (194)
+.+|+...|++|++.+..+. ..++.+..+.++............+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 46788899999999999999 34455554444433322222235666 79999883
No 157
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.015 Score=39.06 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=30.8
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEcc
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEED 38 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 38 (194)
.+++|+.|.|.-|++++-+|+..||+|+.+.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 589999999999999999999999999988774
No 158
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.84 E-value=0.11 Score=31.91 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=37.7
Q ss_pred ceEEeecCCCchHHHHHHHHH----HhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeech
Q 040484 6 EVKLLGRWFSVFSVRVEWALK----LKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSES 69 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS 69 (194)
++++ ..+.||+|.++.-+++ ..|+.++...+ ...+++.+. .. ..+|++..||+..+..
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~~~y-gv-~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEIEKY-GV-MSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHHHHT-T--SSSSEEEETTEEEEES
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHHHHc-CC-CCCCEEEECCEEEEEe
Confidence 5778 5667999997776544 55766665554 334555333 44 6899999988765443
No 159
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.46 E-value=0.029 Score=38.21 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=30.8
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEcc
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEED 38 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 38 (194)
.++||+.+.|.-|++++-+|+..|++|+.+.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 589999999999999999999999999999774
No 160
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.17 E-value=0.087 Score=34.73 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=51.1
Q ss_pred CCCchHHHHHHHHHHh---CCcceEEEccCCCCchhhhhh-CCCCCcccEEE-eCC-------------eeeechHHHHH
Q 040484 13 WFSVFSVRVEWALKLK---GIKYVKIEEDTTNKSSLLLNS-NPIYKRIPVLF-HNE-------------KCFSESLVIIE 74 (194)
Q Consensus 13 ~~~p~~~~~~~~l~~~---gi~~~~~~v~~~~~~~~~~~~-~p~~~~vP~L~-~~~-------------~~i~eS~~I~~ 74 (194)
-.||.|..+.=+|... .-..+++.|+.......+.+. ..-...+|+|+ .+| ..|.++..|++
T Consensus 22 f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~ 101 (112)
T PF11287_consen 22 FYCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILR 101 (112)
T ss_pred EECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHH
Confidence 3688898888888754 556788888887656655543 33225799998 333 26899999999
Q ss_pred HHHhhcCC
Q 040484 75 YIDDTWKH 82 (194)
Q Consensus 75 yL~~~~~~ 82 (194)
||.++|+-
T Consensus 102 ~La~r~g~ 109 (112)
T PF11287_consen 102 YLAERHGF 109 (112)
T ss_pred HHHHHcCC
Confidence 99999874
No 161
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.12 E-value=0.037 Score=37.00 Aligned_cols=32 Identities=19% Similarity=-0.072 Sum_probs=29.8
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEcc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEED 38 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 38 (194)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988764
No 162
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.08 E-value=0.038 Score=36.76 Aligned_cols=31 Identities=16% Similarity=-0.038 Sum_probs=29.3
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEE 37 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v 37 (194)
+++|+.+.|.-|++++-.|+..|++|+.+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 5899999999999999999999999999876
No 163
>PRK10853 putative reductase; Provisional
Probab=94.96 E-value=0.044 Score=36.88 Aligned_cols=32 Identities=22% Similarity=0.119 Sum_probs=30.2
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEcc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEED 38 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 38 (194)
+++|+.+.|.-|++++-+|+..|++|+.+.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999998774
No 164
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.19 Score=37.39 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=57.6
Q ss_pred CceEEe-----ecCCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCcccEEEeCCeeeechHHHHHHH
Q 040484 5 AEVKLL-----GRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYI 76 (194)
Q Consensus 5 ~~~~Ly-----~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL 76 (194)
.++.|| ..|-|+|++++--+|...|++|....|--+. -+..+++.+-. -++|-|-.+|..+.+...|..-+
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHh
Confidence 467888 4689999999999999999999988886552 35667777887 79999999999888877666543
No 165
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=93.17 E-value=0.45 Score=31.58 Aligned_cols=53 Identities=8% Similarity=-0.018 Sum_probs=34.6
Q ss_pred ceEEe-ecCCCchHHHHHHHHHHhCCc---ceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 6 EVKLL-GRWFSVFSVRVEWALKLKGIK---YVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 6 ~~~Ly-~~~~~p~~~~~~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
.+.++ +.++||+|+.++-+++...-. .+...++.+. .+++...... ..+|++.
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v-~~vPt~~ 80 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGV-ERVPTTI 80 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCC-CcCCEEE
Confidence 35555 568999999888777754322 3445555554 4555555555 6899988
No 166
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=92.22 E-value=1.3 Score=28.76 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=40.9
Q ss_pred ceEEeecCCCc------hHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhC---------CCCCcccEEEeCCeeeech
Q 040484 6 EVKLLGRWFSV------FSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSN---------PIYKRIPVLFHNEKCFSES 69 (194)
Q Consensus 6 ~~~Ly~~~~~p------~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~---------p~~~~vP~L~~~~~~i~eS 69 (194)
.+++|....++ .++++..+|+.++|+|+.+.+.... ....+++.. +. ...|-|..|+.-+.+=
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYCGDY 80 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEEEEH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEEeeH
Confidence 47888877665 4689999999999999999887752 233444333 22 3457888888766654
Q ss_pred HHHHH
Q 040484 70 LVIIE 74 (194)
Q Consensus 70 ~~I~~ 74 (194)
-.+.+
T Consensus 81 e~f~e 85 (99)
T PF04908_consen 81 EDFEE 85 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 167
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=90.91 E-value=1.6 Score=29.47 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=21.4
Q ss_pred eEEeecCCCchHHHHHHHHHHh----CCcceEEEcc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK----GIKYVKIEED 38 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~ 38 (194)
+..|+.++||+|+.+.=.|... ++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 5567889999999976655533 4555555554
No 168
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=90.82 E-value=2.8 Score=26.47 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=43.9
Q ss_pred eEEeecCCCchHHHHHHHHHH----hCCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeee------echHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKL----KGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF------SESLVIIE 74 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i------~eS~~I~~ 74 (194)
+..++.++|+.|+...=.+.. .+-++....||... ...+...... ..+|++. .+|..+ .+...|..
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 98 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE-NKELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLIE 98 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT-SHHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhc-cchhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHHH
Confidence 566788999999998855532 22256677777664 3444444445 6899988 566433 24456666
Q ss_pred HHHh
Q 040484 75 YIDD 78 (194)
Q Consensus 75 yL~~ 78 (194)
+|.+
T Consensus 99 ~i~~ 102 (103)
T PF00085_consen 99 FIEK 102 (103)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6653
No 169
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=90.68 E-value=1.3 Score=29.35 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=38.2
Q ss_pred eEEeecCCCchHHHHHHHHHHhCC---cceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGI---KYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCFS 67 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i~ 67 (194)
+..|+.++|+.|+.+.-.++...- ......||.+. ...+.+.... ..+|++. .+|+.+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEEE
Confidence 445677999999988877754321 23556666655 3344444455 6899988 5776654
No 170
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=90.52 E-value=1.9 Score=32.07 Aligned_cols=55 Identities=7% Similarity=0.035 Sum_probs=36.5
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCC---cceEEEccCCCCchhhhhhCCCCCcccEEEeC
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGI---KYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHN 62 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~ 62 (194)
.+++|+.++||+|..+.-++...-. ......+|... .+++...... ..+|++..+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~-~~~~~~~~~V-~~vPtl~i~ 193 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE-NPDLAEKYGV-MSVPKIVIN 193 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC-CHHHHHHhCC-ccCCEEEEe
Confidence 4677899999999998887775422 23344566554 3444444444 579999843
No 171
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=89.33 E-value=1.9 Score=29.67 Aligned_cols=74 Identities=12% Similarity=0.005 Sum_probs=50.0
Q ss_pred CCceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhh--CC-CCCcccEEEeCCeee---echHHHHHHHH
Q 040484 4 QAEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNS--NP-IYKRIPVLFHNEKCF---SESLVIIEYID 77 (194)
Q Consensus 4 ~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~--~p-~~~~vP~L~~~~~~i---~eS~~I~~yL~ 77 (194)
..++..|++|.|+.|....-.++..|.....+..+-. ..++.. -| ....-=+.+.||..+ .--.+|.+.|+
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~---~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF---LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA 101 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH---HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence 4579999999999999988888888887776665432 222221 01 103344667788665 33578999998
Q ss_pred hhc
Q 040484 78 DTW 80 (194)
Q Consensus 78 ~~~ 80 (194)
+..
T Consensus 102 ~~p 104 (149)
T COG3019 102 EKP 104 (149)
T ss_pred CCC
Confidence 876
No 172
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=88.90 E-value=2.7 Score=26.67 Aligned_cols=58 Identities=10% Similarity=-0.043 Sum_probs=35.9
Q ss_pred eEEeecCCCchHHHHHHHHHH----hCCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKL----KGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF 66 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i 66 (194)
+.+|+.++|+.|+...-.+.. .+-.+....+|.+. .+++....-. ..+|++. .+|+.+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v-~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGI-MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCC-eeccEEEEEECCeEE
Confidence 556778999999988777654 12235556666654 3344333334 5799887 566543
No 173
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=88.73 E-value=1.6 Score=28.12 Aligned_cols=53 Identities=15% Similarity=0.010 Sum_probs=32.3
Q ss_pred eEEeecCCCchHHHHHHHH-------HHhCCcceEEEccCCCC---chhhhhhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWAL-------KLKGIKYVKIEEDTTNK---SSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l-------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~L~ 60 (194)
+..|+.++|++|++..-.+ ...+-.+....+|.... ..++...... ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 4567889999999886433 22222566666766432 2344444444 5799887
No 174
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=88.56 E-value=3.1 Score=27.33 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=34.4
Q ss_pred eEEeecCCCchHHHHHHHH-----HHhCCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCee
Q 040484 7 VKLLGRWFSVFSVRVEWAL-----KLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKC 65 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~ 65 (194)
+..++.++|+.|+...-.+ ++.+..+....|+.+. .+.+...... ..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEE
Confidence 5567889999998765443 2333345556666554 3344444445 6899887 56643
No 175
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=88.36 E-value=0.68 Score=30.55 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=23.2
Q ss_pred eecCCCchHHHHHHHHHHhCCcceEEEcc
Q 040484 10 LGRWFSVFSVRVEWALKLKGIKYVKIEED 38 (194)
Q Consensus 10 y~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 38 (194)
|+.+.|.-|++++-+|+..|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78999999999999999999999998774
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=88.35 E-value=1.8 Score=37.20 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=38.5
Q ss_pred ceEEeecCCCchHHHHHHHHH----Hh-CCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeee
Q 040484 6 EVKLLGRWFSVFSVRVEWALK----LK-GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFS 67 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~----~~-gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~ 67 (194)
.+++|..+.||+|-.+.-++. +. +|..+.+.+. . .+++.+.... ..||.++.||+.+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~--~-~~~~~~~~~v-~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS--H-FPDLKDEYGI-MSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc--c-cHHHHHhCCc-eecCEEEECCEEEE
Confidence 588999999999988666444 43 5665555553 3 2445534444 68999998886543
No 177
>PHA02278 thioredoxin-like protein
Probab=88.11 E-value=4.4 Score=26.38 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=34.2
Q ss_pred eEEeecCCCchHHHHHHHHHHh----CCcceEEEccCCCC---chhhhhhCCCCCcccEEE--eCCeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK----GIKYVKIEEDTTNK---SSLLLNSNPIYKRIPVLF--HNEKCF 66 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~L~--~~~~~i 66 (194)
+.-|+.++|+.|+.+.=.++.. ........++.+.. .+++....-. ..+|++. .+|+.+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-ccccEEEEEECCEEE
Confidence 3345778999999777555433 22233445555432 2445444444 6899988 577654
No 178
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.02 E-value=0.81 Score=38.85 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=45.8
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCc---ceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeec----hHHHHHHHHh
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIK---YVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSE----SLVIIEYIDD 78 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~e----S~~I~~yL~~ 78 (194)
.+++|..+.||||-.+.-++...-+. .+...+|... .+++...... ..||.+..|+..+.+ -..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~-~~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL-FQDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh-CHhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 58899999999999887776654332 3333344333 4455555555 689999987765544 2345666654
Q ss_pred h
Q 040484 79 T 79 (194)
Q Consensus 79 ~ 79 (194)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 4
No 179
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.81 E-value=0.72 Score=39.16 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=44.8
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCc---ceEEEccCCCCchhhhhhCCCCCcccEEEeCCeeeech----HHHHHHHHh
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIK---YVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCFSES----LVIIEYIDD 78 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i~eS----~~I~~yL~~ 78 (194)
.+++|..+.||||-.+.-++....+. .+...+|... .+++...... ..||.+..|+..+.+. ..+++.+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~-~~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL-FQDEVEALGI-QGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh-CHHHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 58899999999999987777655433 3333344333 3444444455 6899999877655442 334445543
Q ss_pred h
Q 040484 79 T 79 (194)
Q Consensus 79 ~ 79 (194)
.
T Consensus 198 ~ 198 (515)
T TIGR03140 198 T 198 (515)
T ss_pred c
Confidence 3
No 180
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=86.56 E-value=4.2 Score=30.19 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=35.9
Q ss_pred ceEEeec---CCCchHHHHHHHHHHhC-----CcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCe
Q 040484 6 EVKLLGR---WFSVFSVRVEWALKLKG-----IKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEK 64 (194)
Q Consensus 6 ~~~Ly~~---~~~p~~~~~~~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~ 64 (194)
.+.+|+. ++||.|+.+.=+++... +.+..+.+|.+. .+++....-. ..+|++. .+|.
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-~~~l~~~~~V-~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-DKEEAEKYGV-ERVPTTIILEEGK 88 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-cHHHHHHcCC-CccCEEEEEeCCe
Confidence 5677877 89999998887776552 333344444333 4455444445 6899988 4553
No 181
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=86.33 E-value=3.1 Score=26.16 Aligned_cols=57 Identities=5% Similarity=-0.052 Sum_probs=36.3
Q ss_pred eEEeecCCCchHHHHHHHHHHh----CCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK----GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKC 65 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~ 65 (194)
+..|+.++|+.|++..-.+... ...+....+|.....+-....+. ..+|++. .+|..
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI--TAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC--ccccEEEEEECCEE
Confidence 4566789999999887766542 33566666666543333344454 4699887 56654
No 182
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=86.23 E-value=2.4 Score=30.43 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCc---cceecCCCCcchhhHHhhHHHHHH
Q 040484 115 VKQIKDAMEVIEKVLMLELKGK---KFFGGDADVGLIDIVLGWLPIWLD 160 (194)
Q Consensus 115 ~~~~~~~l~~le~~l~~~l~~~---~fl~G~~~~t~aD~~l~~~l~~~~ 160 (194)
...-.+.+..|++. +++. +|+.|++.+|-+||.+++.|.-+.
T Consensus 110 ~~~a~~~l~~L~~~----L~~~~~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 110 SKLAMECLSLLEEL----LGEWEEARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHHH----HhhccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 34566778888888 5666 899998239999999998877753
No 183
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=85.38 E-value=3.8 Score=27.32 Aligned_cols=53 Identities=8% Similarity=0.102 Sum_probs=30.3
Q ss_pred eEEeecCCCchHHHHHHHH-------HHhCCcceEEEccCCCC------------chhhhhhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWAL-------KLKGIKYVKIEEDTTNK------------SSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l-------~~~gi~~~~~~v~~~~~------------~~~~~~~~p~~~~vP~L~ 60 (194)
+..|+.++||+|++..-.+ ...+-.|..+.++.+.. ...+...... ..+|+++
T Consensus 18 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v-~~~Pt~~ 89 (125)
T cd02951 18 LLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV-RFTPTVI 89 (125)
T ss_pred EEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC-ccccEEE
Confidence 5566889999999875322 22222455566665432 1344333334 5699876
No 184
>PRK09381 trxA thioredoxin; Provisional
Probab=85.15 E-value=6.3 Score=25.45 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=34.7
Q ss_pred eEEeecCCCchHHHHHHHHHH----hCCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKL----KGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF 66 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i 66 (194)
+..++.++||.|+...-.++. .+-.+....++.+....-....+ . ..+|++. .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~-v-~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-I-RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCC-C-CcCCEEEEEeCCeEE
Confidence 445677899999988644432 22235666676665333333344 4 5899887 466543
No 185
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=84.82 E-value=5.3 Score=26.65 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=35.6
Q ss_pred EeecCCCchHHHHHHHHHHhCCc----ceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 040484 9 LLGRWFSVFSVRVEWALKLKGIK----YVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF 66 (194)
Q Consensus 9 Ly~~~~~p~~~~~~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i 66 (194)
-++.++||.|+.+.=.++..--. .....||.+. .+++.+..-. ..+|++. .+|+.+
T Consensus 20 ~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~-~~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 20 RFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE-VPDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC-CHHHHHHcCC-CCCCEEEEEECCEEE
Confidence 36789999999886666443222 3445666665 4555555445 5799988 566543
No 186
>PTZ00051 thioredoxin; Provisional
Probab=84.49 E-value=7.2 Score=24.49 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=34.3
Q ss_pred eEEeecCCCchHHHHHHHHHHh---CCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK---GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKC 65 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~---gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~ 65 (194)
+..++.++|+.|+...-.+... ...+....++... ...+.+.... ..+|+++ .+|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENI-TSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCC-ceeeEEEEEeCCeE
Confidence 4567889999999886655542 1224445555543 3344444444 5799887 45543
No 187
>PRK10996 thioredoxin 2; Provisional
Probab=83.24 E-value=10 Score=26.07 Aligned_cols=58 Identities=14% Similarity=0.017 Sum_probs=35.8
Q ss_pred eEEeecCCCchHHHHHHHHHH----hCCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKL----KGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF 66 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i 66 (194)
+..|+.++|+.|+...-.+.. .+-.+....+|.+. .+.+.+..-. ..+|++. .+|+.+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~-~~~l~~~~~V-~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA-ERELSARFRI-RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CHHHHHhcCC-CccCEEEEEECCEEE
Confidence 556788999999986544433 23345666676665 3444433344 5799887 566543
No 188
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=83.11 E-value=9.1 Score=24.55 Aligned_cols=56 Identities=14% Similarity=-0.067 Sum_probs=32.3
Q ss_pred eEEeecCCCchHHHHHHHHHHh----C-CcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK----G-IKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKC 65 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~----g-i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~ 65 (194)
+..|+.++|+.|+...-.+... + -......++.+ .++..+..-. ..+|++. .+|..
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRG-KCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCC-CcCcEEEEEECCEE
Confidence 4456789999999876555422 2 12344455555 2334433334 5799877 56643
No 189
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=83.01 E-value=8 Score=23.33 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=34.0
Q ss_pred eEEeecCCCchHHHHHHHHHHh---CCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCe
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK---GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEK 64 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~---gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~ 64 (194)
+.+++.++|+.|+...-.+... .-.+....++... ...+...... ..+|++. .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v-~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE-NPELAEEYGV-RSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC-ChhHHHhcCc-ccccEEEEEECCE
Confidence 5677889999999988888762 1223344444443 2333333344 5799877 4564
No 190
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=82.42 E-value=9.6 Score=23.82 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=35.2
Q ss_pred eEEeecCCCchHHHHHHHHHHhC----CcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKG----IKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKC 65 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~ 65 (194)
+..++.++|+.|+...-.+.... -.+....||.+. ...+.+.-.. ..+|++. ++|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 44567789999998866665332 235556666654 4444444344 5799888 56644
No 191
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=81.79 E-value=7.7 Score=24.67 Aligned_cols=56 Identities=7% Similarity=-0.075 Sum_probs=33.7
Q ss_pred eEEeecCCCchHHHHHHHHHHhCC----cceEEEccCCCCchhhhhhCCCCCcccEEE--eCCe
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGI----KYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEK 64 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~ 64 (194)
+..++.++|+.|+...-.+....- .+....||.+. .+.+.+.... ..+|++. .+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD-DRMLCRSQGV-NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc-cHHHHHHcCC-CccCEEEEEcCCC
Confidence 456788999999987655543221 24556666654 3344433344 6899886 4553
No 192
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=81.78 E-value=9.1 Score=26.92 Aligned_cols=60 Identities=10% Similarity=-0.061 Sum_probs=35.7
Q ss_pred eEEeecCCCchHHHHHHHHHHh-----CCcceEEEccCCCCchhhhhh-CCCC----CcccEEE--eCCeeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK-----GIKYVKIEEDTTNKSSLLLNS-NPIY----KRIPVLF--HNEKCFS 67 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~-~p~~----~~vP~L~--~~~~~i~ 67 (194)
+..|+.++||.|+...-.++.. +-.+....||.+.. +++.+. +-.. +++|++. .+|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 5677889999999877555432 23466677776543 333332 2210 2389887 6776554
No 193
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=80.41 E-value=6.9 Score=25.65 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=35.0
Q ss_pred eEEeecCCCchHHHHHHHHHHhCC---cceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGI---KYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCFS 67 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i~ 67 (194)
+..++.++|+.|+.+.-.++...- ......||.... .+.+..-. ..+|++. .+|+.+.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELID 90 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEE
Confidence 445788999999988766653221 133445555432 44444344 5899888 5776554
No 194
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=79.99 E-value=8.9 Score=25.50 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=31.4
Q ss_pred eEEeecCCCchHHHHHHHHHH------hCCcceEEEccCCCCchhhhhhCCCCCcccEEE--e-CCeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKL------KGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--H-NEKCF 66 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~-~~~~i 66 (194)
+..++.++|+.|+...-.+.. ....|-.+.++-.. .+.....+..++.+|+++ + +|+.+
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCc
Confidence 344677899999988655544 22344444444322 111123344423499887 3 55543
No 195
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=78.67 E-value=1.9 Score=29.02 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=14.0
Q ss_pred CcccEEE--eCCeeeechHHHHHHHHhhcCC
Q 040484 54 KRIPVLF--HNEKCFSESLVIIEYIDDTWKH 82 (194)
Q Consensus 54 ~~vP~L~--~~~~~i~eS~~I~~yL~~~~~~ 82 (194)
..-|.|. -+|+.+.|+.||.+||..-|.+
T Consensus 34 ~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 34 ESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp --S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred cccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 3457785 3678999999999999987664
No 196
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.39 E-value=8.9 Score=25.83 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=40.1
Q ss_pred cCCCchHHHHH----HHHHHhCCcceEEEccCCCCchhhhhhCCCCC-------cccEEE-eC--CeeeechHHHHHHHH
Q 040484 12 RWFSVFSVRVE----WALKLKGIKYVKIEEDTTNKSSLLLNSNPIYK-------RIPVLF-HN--EKCFSESLVIIEYID 77 (194)
Q Consensus 12 ~~~~p~~~~~~----~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~-------~vP~L~-~~--~~~i~eS~~I~~yL~ 77 (194)
-++||.|.++. =+|++..-+...+.|...+++.+--..||+ + -||+|. .+ .+.+.+...-...|.
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~F-R~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lv 120 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPF-RKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLV 120 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcc-ccCCCceeecceeeEEcCccccchHhHhhHHHHH
Confidence 46999998754 455666666777777665433333333333 2 388888 33 355666666666665
Q ss_pred hh
Q 040484 78 DT 79 (194)
Q Consensus 78 ~~ 79 (194)
+.
T Consensus 121 e~ 122 (128)
T KOG3425|consen 121 EM 122 (128)
T ss_pred HH
Confidence 44
No 197
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=77.47 E-value=9.7 Score=24.92 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=42.7
Q ss_pred EeecCCCchHHHHHHHHHHhCCcceEEEccCCC-Cchhhh---hh---CCCCCcccEEEeCCe-eeechHHHHHHHHhh
Q 040484 9 LLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLL---NS---NPIYKRIPVLFHNEK-CFSESLVIIEYIDDT 79 (194)
Q Consensus 9 Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~---~~---~p~~~~vP~L~~~~~-~i~eS~~I~~yL~~~ 79 (194)
|+|+..||+|.+..-.+...+..-....++... ...++. .+ +.. ..+-+ ..+|. .+.++.|+..-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 578899999999998888887644445555421 111211 11 222 23333 55565 999999999876544
No 198
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=75.89 E-value=18 Score=23.19 Aligned_cols=59 Identities=14% Similarity=0.031 Sum_probs=33.5
Q ss_pred eEEeecCCCchHHHHHHHHHHhC---CcceEEEccCCCCc--hhhhhhCCCCCcccEEE--eCCeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKG---IKYVKIEEDTTNKS--SLLLNSNPIYKRIPVLF--HNEKCF 66 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~g---i~~~~~~v~~~~~~--~~~~~~~p~~~~vP~L~--~~~~~i 66 (194)
+..|+.++|+.|+...=.+.... -.+....|+.+... .++.+.... ..+|++. .+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 44557789999987765554321 12344555554322 245544444 5799887 466543
No 199
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=75.82 E-value=17 Score=22.87 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=31.6
Q ss_pred eEEeecCCCchHHHHHHHH----HHhC--CcceEEEccCCC-CchhhhhhCCCCCcccEEE--eCCe
Q 040484 7 VKLLGRWFSVFSVRVEWAL----KLKG--IKYVKIEEDTTN-KSSLLLNSNPIYKRIPVLF--HNEK 64 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l----~~~g--i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~--~~~~ 64 (194)
+.+|+.++|+.|+...=.+ +... -.+....++... ..+.+...... ..+|++. .+|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEEEeCCC
Confidence 5577889999999885322 2221 224444455543 13444444344 4799887 3444
No 200
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=75.72 E-value=14 Score=23.94 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=32.8
Q ss_pred ceEEeecCCCchHHHHHHHHHH-----hCCcceEEEccCCCCchhhh-hhCCCCCcccEEE
Q 040484 6 EVKLLGRWFSVFSVRVEWALKL-----KGIKYVKIEEDTTNKSSLLL-NSNPIYKRIPVLF 60 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~-----~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 60 (194)
-+..|+.++||.|++..-.+.. .+..+....|+.+.....+. ..... ..+|++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 3667788999999987654432 33445666666554222332 22344 5799887
No 201
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=75.47 E-value=15 Score=23.22 Aligned_cols=53 Identities=8% Similarity=-0.039 Sum_probs=32.9
Q ss_pred ceEEeecCCCchHHHHHHHHHHh-----CCcceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLK-----GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
-+..++.++|+.|+...=.+... +..+....||... .+.+...... ..+|++.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIY 76 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEE
Confidence 35677889999999866554422 3345556666554 3344433344 5799887
No 202
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=74.05 E-value=11 Score=24.03 Aligned_cols=52 Identities=12% Similarity=-0.098 Sum_probs=31.9
Q ss_pred eEEeecCCCchHHHHHHHHHHh----CCcceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK----GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
+..|+.++|+.|++..=.+... +-.+....||... .+++...... ..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI-RAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC-CcccEEE
Confidence 5567889999998875554432 2224555666554 3444444444 6799887
No 203
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=73.83 E-value=13 Score=24.66 Aligned_cols=60 Identities=15% Similarity=0.017 Sum_probs=39.4
Q ss_pred ceEEeecCC--CchHHHHHHHHHHhCCcc----eEEEccCCCCchhhhhhCCCCCcccEEE--eCCeeee
Q 040484 6 EVKLLGRWF--SVFSVRVEWALKLKGIKY----VKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCFS 67 (194)
Q Consensus 6 ~~~Ly~~~~--~p~~~~~~~~l~~~gi~~----~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i~ 67 (194)
.+.+|+..+ ||-|+.+.-.+...--.| ....|+.+. .+++....-. ..+|+|. .+|+.+.
T Consensus 30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~-~~~la~~f~V-~sIPTli~fkdGk~v~ 97 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD-EQALAARFGV-LRTPALLFFRDGRYVG 97 (111)
T ss_pred EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC-CHHHHHHcCC-CcCCEEEEEECCEEEE
Confidence 455666664 999999987776554443 344566655 3466555555 6899998 5776654
No 204
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=73.64 E-value=23 Score=23.76 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=29.7
Q ss_pred CCCchHHHHHHHH----HHhCCcceEEEccCCC------CchhhhhhCCCCC-cccEEE--eCCeeee
Q 040484 13 WFSVFSVRVEWAL----KLKGIKYVKIEEDTTN------KSSLLLNSNPIYK-RIPVLF--HNEKCFS 67 (194)
Q Consensus 13 ~~~p~~~~~~~~l----~~~gi~~~~~~v~~~~------~~~~~~~~~p~~~-~vP~L~--~~~~~i~ 67 (194)
++||.|+.+.=.+ ....-.+..+.|+.+. ....+....-. . .+|++. .++..+.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLV 104 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceec
Confidence 7999999775444 3333235556666543 22344433222 3 699988 3444443
No 205
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=72.81 E-value=26 Score=25.19 Aligned_cols=58 Identities=7% Similarity=-0.148 Sum_probs=34.0
Q ss_pred eEEeecCCCchHHHHHHHHHHh---CCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK---GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCFS 67 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~---gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i~ 67 (194)
+..++.++|+.|+.+-=.|... --....+.|+... . .+....+. ..+|+|. .+|..+.
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~-~-~l~~~f~v-~~vPTlllyk~G~~v~ 149 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA-T-GASDEFDT-DALPALLVYKGGELIG 149 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc-h-hhHHhCCC-CCCCEEEEEECCEEEE
Confidence 3346779999998765433322 1124445555543 2 44444566 6899888 5776654
No 206
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=72.49 E-value=20 Score=22.20 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=33.2
Q ss_pred eEEeecCCCchHHHHHHHHHHh----CCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCe
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK----GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEK 64 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~ 64 (194)
+..++.++|+.|+...-.+... +-.+....+|... .+.+...--. ..+|++. .+|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE-NPDIAAKYGI-RSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC-CHHHHHHcCC-CcCCEEEEEeCCc
Confidence 4456778999999886555432 2236666666654 3333333333 5799877 4553
No 207
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=72.45 E-value=7.9 Score=28.23 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=18.6
Q ss_pred ceEEeecCCCchHHHHHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALKL 27 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~ 27 (194)
.+.+|..+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 4678889999999999887764
No 208
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=71.64 E-value=41 Score=25.36 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=42.8
Q ss_pred eEEeecCCCchHHHHHHHHHHh----CCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeee------echHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK----GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF------SESLVIIE 74 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i------~eS~~I~~ 74 (194)
+..++.++|+.|+...=.++.. +-.+....+|... .+.+.+.... ..+|++. ++|..+ .....|.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~-~~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~~ 133 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR-ALNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLAA 133 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc-cHHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHHH
Confidence 5567889999998775544332 2124445555544 3444444444 6799887 566543 23455666
Q ss_pred HHHhhcC
Q 040484 75 YIDDTWK 81 (194)
Q Consensus 75 yL~~~~~ 81 (194)
++.+.+.
T Consensus 134 fi~~~~~ 140 (224)
T PTZ00443 134 FALGDFK 140 (224)
T ss_pred HHHHHHH
Confidence 6666654
No 209
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=71.51 E-value=25 Score=24.21 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=29.9
Q ss_pred eEEeecCCCchHHHHHHHHHHh----CCcceEEEccCCCC-chhhhhhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK----GIKYVKIEEDTTNK-SSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~-~~~~~~~~p~~~~vP~L~ 60 (194)
+..|+.++|+.|+...=.+... +-.+..+.|+.+.. ...+...... ..+|+++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v 81 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFV 81 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEE
Confidence 3455778999998876555432 22345555555432 2233333334 5799877
No 210
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=71.31 E-value=12 Score=23.99 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=30.7
Q ss_pred eEEeecCCCchHHHHHHHHHHhCC---cceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGI---KYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
+..|+.++|+.|+...=.++...- .+....||.....+.+...... ..+|++.
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V-~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV-VGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC-eecCEEE
Confidence 455678999999988755543321 1334445544233444444444 5799887
No 211
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=70.26 E-value=30 Score=23.24 Aligned_cols=48 Identities=6% Similarity=0.070 Sum_probs=28.5
Q ss_pred CcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeee-----echHHHHHHHHhh
Q 040484 30 IKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF-----SESLVIIEYIDDT 79 (194)
Q Consensus 30 i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i-----~eS~~I~~yL~~~ 79 (194)
-.+....||.+. .+++.+..-. ..+|+|. .+|+.+ .....|..+|.+.
T Consensus 64 ~~v~~~kVD~d~-~~~La~~~~I-~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 64 KGIGFGLVDSKK-DAKVAKKLGL-DEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred CCCEEEEEeCCC-CHHHHHHcCC-ccccEEEEEECCEEEEeeCCCCHHHHHHHHHHH
Confidence 346666776664 4566555555 6899997 577543 2234566665543
No 212
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=69.91 E-value=6.2 Score=26.57 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=28.8
Q ss_pred cCCCchHHHHHHHHH----HhCCcceEEEccCCC------Cchhhhhh--CCCCCcccEEE--eCCeeeechHH
Q 040484 12 RWFSVFSVRVEWALK----LKGIKYVKIEEDTTN------KSSLLLNS--NPIYKRIPVLF--HNEKCFSESLV 71 (194)
Q Consensus 12 ~~~~p~~~~~~~~l~----~~gi~~~~~~v~~~~------~~~~~~~~--~p~~~~vP~L~--~~~~~i~eS~~ 71 (194)
.++||.|.++.-.+. ...-....+.|...+ ....|+.. --. ..||+|. .++..+.|...
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhhh
Confidence 469999999885554 322234444444432 22244431 123 4699999 34556665543
No 213
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=69.38 E-value=20 Score=23.08 Aligned_cols=56 Identities=18% Similarity=0.084 Sum_probs=33.8
Q ss_pred eEEeecCCCchHHHHHHHHHHhC------C----cceEEEccCCCCchhhhhhCCCCCcccEEE--eCCe
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKG------I----KYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEK 64 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~g------i----~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~ 64 (194)
+..|+.++|+.|++..-.+...- . .+....||.+. ...+...... ..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-~~~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-ESDIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-CHHHHHhCCC-CcCCEEEEEeCCc
Confidence 45678899999998876664221 1 24445565554 3444444444 6899887 4554
No 214
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=67.71 E-value=15 Score=24.39 Aligned_cols=52 Identities=8% Similarity=-0.056 Sum_probs=32.1
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCc----ceEEEccCCCCchhhh-hhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIK----YVKIEEDTTNKSSLLL-NSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~----~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 60 (194)
+..|+.++|+.|+...-.++...-. .....||.+. ...+. ...-. ..+|+|.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~-~~~l~~~~~~I-~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW-PQGKCRKQKHF-FYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-ChHHHHHhcCC-cccCEEE
Confidence 4567889999999887766655322 4445666543 33343 22233 5799887
No 215
>PTZ00102 disulphide isomerase; Provisional
Probab=67.12 E-value=48 Score=27.63 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=44.8
Q ss_pred eEEeecCCCchHHHHHHHH-------HHhCCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCee--e---echHHH
Q 040484 7 VKLLGRWFSVFSVRVEWAL-------KLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKC--F---SESLVI 72 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~--i---~eS~~I 72 (194)
+..++.++|+.|++..=.+ ...+-++....||... ...+...... ..+|++. .+|.. + .....|
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-EMELAQEFGV-RGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-CHHHHHhcCC-CcccEEEEEECCceEEecCCCCHHHH
Confidence 5677889999999765221 1223456666666554 3344333333 4699886 45432 2 355778
Q ss_pred HHHHHhhcCC
Q 040484 73 IEYIDDTWKH 82 (194)
Q Consensus 73 ~~yL~~~~~~ 82 (194)
..++.+...+
T Consensus 131 ~~~l~~~~~~ 140 (477)
T PTZ00102 131 VSWIKKLTGP 140 (477)
T ss_pred HHHHHHhhCC
Confidence 8998887654
No 216
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=66.80 E-value=29 Score=21.72 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=32.3
Q ss_pred eEEeecCCCchHHHHHHHH-----HHhC--CcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCe
Q 040484 7 VKLLGRWFSVFSVRVEWAL-----KLKG--IKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEK 64 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l-----~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~ 64 (194)
+..|+.++|+.|+...=.+ ...+ -.+....+|... ...+.+.... ..+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-HRELCSEFQV-RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-ChhhHhhcCC-CcCCEEEEEeCCC
Confidence 4567889999999764433 2333 245666666554 2233333334 5799877 4553
No 217
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=65.95 E-value=11 Score=28.56 Aligned_cols=23 Identities=4% Similarity=0.003 Sum_probs=18.6
Q ss_pred ceEEeecCCCchHHHHHHHHHHh
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLK 28 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~ 28 (194)
.+.+|.++.||||++..--+...
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHH
Confidence 47788999999999998666543
No 218
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=64.84 E-value=49 Score=27.30 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=44.6
Q ss_pred eEEeecCCCchHHHHHHHHH-----Hh--CCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCee----e---echH
Q 040484 7 VKLLGRWFSVFSVRVEWALK-----LK--GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKC----F---SESL 70 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~-----~~--gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~----i---~eS~ 70 (194)
+.+|+.++|+.|++..=.+. +. +-.+....||... ..++...... ..+|++. .+|.. + .+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-EKDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-cHHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 56778899999998753332 22 3236666666654 3344433344 5699886 34432 1 3567
Q ss_pred HHHHHHHhhcC
Q 040484 71 VIIEYIDDTWK 81 (194)
Q Consensus 71 ~I~~yL~~~~~ 81 (194)
.|..++.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 78888887765
No 219
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=64.59 E-value=34 Score=21.76 Aligned_cols=53 Identities=8% Similarity=-0.076 Sum_probs=31.3
Q ss_pred eEEeecCCCchHHHHHHHHHHh----CCcceEEEccCCCC-chhhhhhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK----GIKYVKIEEDTTNK-SSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~-~~~~~~~~p~~~~vP~L~ 60 (194)
+..++.++|+.|+...-.+... +-.+....++.+.. ...+...... ..+|++.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEE
Confidence 5677889999999865443322 22344555555431 3344444444 5799887
No 220
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.47 E-value=15 Score=28.53 Aligned_cols=69 Identities=10% Similarity=0.003 Sum_probs=49.6
Q ss_pred ceEEeecCC------CchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhC----CCCCcccEEEeCCeeeechHHHHH
Q 040484 6 EVKLLGRWF------SVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSN----PIYKRIPVLFHNEKCFSESLVIIE 74 (194)
Q Consensus 6 ~~~Ly~~~~------~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~~vP~L~~~~~~i~eS~~I~~ 74 (194)
++.+|.... --.|..||.+|+-.+|.|++..|.++. ..+++..+- -. -.+|.+..+|.-|...--|.+
T Consensus 132 ~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 132 RVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred eEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhhh
Confidence 567775432 236899999999999999999999973 244444331 12 579988889988877776665
Q ss_pred H
Q 040484 75 Y 75 (194)
Q Consensus 75 y 75 (194)
.
T Consensus 211 L 211 (281)
T KOG2824|consen 211 L 211 (281)
T ss_pred h
Confidence 3
No 221
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=64.39 E-value=37 Score=22.90 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=35.2
Q ss_pred eecCCCchHHHHHH-------HHHHhCCcceEEEccCCCCchhhhh--------hCCCCCcccEEE---eCCeeeech
Q 040484 10 LGRWFSVFSVRVEW-------ALKLKGIKYVKIEEDTTNKSSLLLN--------SNPIYKRIPVLF---HNEKCFSES 69 (194)
Q Consensus 10 y~~~~~p~~~~~~~-------~l~~~gi~~~~~~v~~~~~~~~~~~--------~~p~~~~vP~L~---~~~~~i~eS 69 (194)
++..+|++|++..- +.....-.|..+.+|.+..+ ++.+ .... +-+|+++ .+|+.+..+
T Consensus 22 f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~-~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 22 IGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP-DVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc-HHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence 56789999998742 22333457888888876532 2221 1123 4589887 356776654
No 222
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=64.04 E-value=11 Score=28.82 Aligned_cols=21 Identities=5% Similarity=-0.121 Sum_probs=17.3
Q ss_pred ceEEeecCCCchHHHHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALK 26 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~ 26 (194)
.+..|.++.||||++..--+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 367789999999999987654
No 223
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=63.78 E-value=8 Score=24.99 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=21.2
Q ss_pred ceEEeecCCCchHHHHHHHHHH-------hCCcceEEEccCC
Q 040484 6 EVKLLGRWFSVFSVRVEWALKL-------KGIKYVKIEEDTT 40 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~-------~gi~~~~~~v~~~ 40 (194)
.+.+|+.++||+|++..--+.. ..-.+..+.++..
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 3556688999999988655542 1224666666665
No 224
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=63.37 E-value=32 Score=21.04 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=34.0
Q ss_pred ceEEeecCCCchHHHHHHHHHHh------CCcceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLK------GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~------gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
-+.+|+.++|+.|+...-.+... +-.+....++... ...+...-.. ..+|++.
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-RGYPTIK 76 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-CCCCEEE
Confidence 46677889999999987766542 2345555665544 3444444344 5799887
No 225
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=62.25 E-value=38 Score=21.53 Aligned_cols=52 Identities=12% Similarity=-0.037 Sum_probs=29.9
Q ss_pred eEEeecCCCchHHHHHHHHHH----h---CCcceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKL----K---GIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~----~---gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
+..|+.++||.|++..-.+.. . +..+....++... .+.+.+.... ..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~I-~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-YSSIASEFGV-RGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-CHhHHhhcCC-ccccEEE
Confidence 445677899999976644432 1 3335555555443 2344333333 5799887
No 226
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=61.98 E-value=31 Score=22.59 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=36.1
Q ss_pred EEeecCCCchHHHHHHHHHHhCCcce---EEEccCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 040484 8 KLLGRWFSVFSVRVEWALKLKGIKYV---KIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF 66 (194)
Q Consensus 8 ~Ly~~~~~p~~~~~~~~l~~~gi~~~---~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i 66 (194)
.-|+..+||.|..+.=.+..+-..|. ...||.+. ..++....-. ..+|+++ -+|..+
T Consensus 26 vdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~~~~~~~~~V-~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 26 VDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-LEEVAKEFNV-KAMPTFVFYKGGEEV 87 (106)
T ss_pred EEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-CHhHHHhcCc-eEeeEEEEEECCEEE
Confidence 33677899999988766665544443 33445555 5555555445 6899998 466543
No 227
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=61.67 E-value=17 Score=22.25 Aligned_cols=22 Identities=9% Similarity=-0.118 Sum_probs=18.5
Q ss_pred eEEeecCCCchHHHHHHHHHHh
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK 28 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~ 28 (194)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4689999999999998888764
No 228
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=61.14 E-value=37 Score=21.06 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=31.3
Q ss_pred ceEEeecCCCchHHHHHHHHH-----HhCC-cceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 6 EVKLLGRWFSVFSVRVEWALK-----LKGI-KYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~-----~~gi-~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
-+..|+.++|+.|+...-.+. +.+- .+....+|... ...+...... ..+|++.
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-EKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-hHHHHHhCCC-CcCCEEE
Confidence 367888999999998544443 2222 24455555443 3444444444 5799885
No 229
>PHA03075 glutaredoxin-like protein; Provisional
Probab=59.84 E-value=16 Score=24.37 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=32.0
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCC
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTT 40 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 40 (194)
.+.|++-|.|+-|..+.-+|+...=.|+...|+..
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl 38 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVNIL 38 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEEee
Confidence 57899999999999999999999999999999754
No 230
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=58.37 E-value=59 Score=22.50 Aligned_cols=76 Identities=9% Similarity=-0.115 Sum_probs=49.2
Q ss_pred CceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCC-CchhhhhhCCCCCccc---EEEeCCeeeechHHHHHHHHhhc
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTN-KSSLLLNSNPIYKRIP---VLFHNEKCFSESLVIIEYIDDTW 80 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP---~L~~~~~~i~eS~~I~~yL~~~~ 80 (194)
..+++++.-.||+|-..--+|.-+...=.....++.. ....+....+...--+ .++.+|..+.+|.|+++-+-..-
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 4578889999999988877777776665555555432 1233443333211112 23368899999999999877654
No 231
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=56.55 E-value=39 Score=21.10 Aligned_cols=54 Identities=9% Similarity=-0.057 Sum_probs=32.4
Q ss_pred ceEEeecCCCchHHHHHHHHHH----hC--CcceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 6 EVKLLGRWFSVFSVRVEWALKL----KG--IKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~----~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
-+..|+.++|+.|+...-.+.. .. -.+....+|.....+.+...-.. ..+|++.
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i-~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV-SGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC-CCcCEEE
Confidence 3667788999999866544432 22 23556666655423444443344 5799887
No 232
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=56.11 E-value=7.7 Score=29.18 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHH
Q 040484 119 KDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLP 156 (194)
Q Consensus 119 ~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l 156 (194)
.+.++.++.. |.+.+|+-|. +++-.|+.++..+
T Consensus 10 ~~glk~l~~s----LA~ks~~~g~-~~s~edv~vf~al 42 (231)
T KOG1668|consen 10 PAGLKKLNKS----LAEKSYIEGY-QLSKEDVVVFAAL 42 (231)
T ss_pred hhhhhhhhHh----hhcccCCCCC-Ccccccceeehhc
Confidence 5678888888 8899999999 9999999988655
No 233
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.02 E-value=17 Score=26.32 Aligned_cols=19 Identities=5% Similarity=0.029 Sum_probs=14.7
Q ss_pred eEEeecCCCchHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWAL 25 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l 25 (194)
|++|++..||||....--|
T Consensus 1 I~~~~D~~cP~cyl~~~~l 19 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRL 19 (201)
T ss_pred CeEEecCcCccHHHHHHHH
Confidence 5789999999999555444
No 234
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.19 E-value=41 Score=23.63 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=37.3
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCc----ceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIK----YVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF 66 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i 66 (194)
+.=|+..+|+.|+.+-=.|+..--+ ++...||.+. ..++....-. ..+|+++ .||..+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~-~~ela~~Y~I-~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE-HPELAEDYEI-SAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc-ccchHhhcce-eeeeEEEEEECCEEe
Confidence 3446778999998877666655333 5555666554 3444444445 6799887 688654
No 235
>PF13728 TraF: F plasmid transfer operon protein
Probab=52.33 E-value=57 Score=24.34 Aligned_cols=54 Identities=13% Similarity=0.069 Sum_probs=34.9
Q ss_pred CceEEeecCCCchHHHH----HHHHHHhCCcceEEEccCC---------CCchhhhhhCCCCCcccEEE
Q 040484 5 AEVKLLGRWFSVFSVRV----EWALKLKGIKYVKIEEDTT---------NKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~----~~~l~~~gi~~~~~~v~~~---------~~~~~~~~~~p~~~~vP~L~ 60 (194)
-.+.+++...||+|+.- +.+....|+.+-.+.+|.. .........+. ..+|+|.
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~ 188 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALF 188 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEE
Confidence 35778888999999764 4555566888777777632 11223334454 5799887
No 236
>PLN02309 5'-adenylylsulfate reductase
Probab=51.81 E-value=51 Score=27.80 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=32.4
Q ss_pred eEEeecCCCchHHHHHHHHH-----HhCCcceEEEccCCCCchhhhh-hCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALK-----LKGIKYVKIEEDTTNKSSLLLN-SNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~-----~~gi~~~~~~v~~~~~~~~~~~-~~p~~~~vP~L~ 60 (194)
+..||.++|+.|+.+.-.+. +.+..+....|+.+.....+.. ..-. ..+|++.
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I-~~~PTil 427 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTIL 427 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC-ceeeEEE
Confidence 56788999999997664443 2344466666666522333332 2234 5799988
No 237
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=51.60 E-value=57 Score=20.31 Aligned_cols=52 Identities=10% Similarity=-0.127 Sum_probs=29.8
Q ss_pred eEEeecCCCchHHHHHHHHHH----hCCcceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKL----KGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
+.+++.++|+.|+...-.+.. ..-.+....++......-....+. ..+|++.
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i--~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV--RGFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC--CccCEEE
Confidence 456678899999987543322 222355555665543333334444 4699876
No 238
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=51.55 E-value=26 Score=25.78 Aligned_cols=34 Identities=9% Similarity=-0.085 Sum_probs=22.9
Q ss_pred CceEEeecCCCchHHHHH----HHHHHhCCcceEEEcc
Q 040484 5 AEVKLLGRWFSVFSVRVE----WALKLKGIKYVKIEED 38 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~----~~l~~~gi~~~~~~v~ 38 (194)
+++.+|+...||||.-.. -++...++.++.+.+.
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 368899999999997653 3334456655555553
No 239
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=50.88 E-value=28 Score=21.80 Aligned_cols=51 Identities=8% Similarity=-0.067 Sum_probs=29.9
Q ss_pred eEEeecCCCchHHHHHHHHHHhC------CcceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKG------IKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~g------i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
+.+++.++|+.|+...-.+.... ..+....+|.... +.....+. ..+|++.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~--~~~Pt~~ 78 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV--DGFPTIL 78 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC--CCCCEEE
Confidence 56778899999998765554332 2355555655432 22222232 4799887
No 240
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=50.80 E-value=20 Score=23.64 Aligned_cols=26 Identities=15% Similarity=0.434 Sum_probs=21.3
Q ss_pred ccEEE-eCCeeeechHHHHHHHHhhcC
Q 040484 56 IPVLF-HNEKCFSESLVIIEYIDDTWK 81 (194)
Q Consensus 56 vP~L~-~~~~~i~eS~~I~~yL~~~~~ 81 (194)
+|.+. .+|..+++|..|+++.+..+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 46565 799999999999999877655
No 241
>PRK09266 hypothetical protein; Provisional
Probab=49.98 E-value=31 Score=26.49 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=41.5
Q ss_pred HHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhcCCC
Q 040484 24 ALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTWKHN 83 (194)
Q Consensus 24 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~ 83 (194)
.+...|+++++..+++. ...+.|.--+.. +-+|+...++..+.+...|.+.|.+.|...
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~-gi~pV~~i~~~~~~~~~~~~~~l~~~~~~~ 261 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWR-GQRAVSAIDDVALPDSHALLELLRRAYEAE 261 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCcc-ceEEEEEECCEECCCCchHHHHHHHHHHhc
Confidence 44556899999988775 223344444445 899999988888876678888887777543
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.60 E-value=75 Score=25.13 Aligned_cols=74 Identities=7% Similarity=0.063 Sum_probs=49.1
Q ss_pred eEEeecCCCchHHHHHHHHH----HhCCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeee------echHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALK----LKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF------SESLVIIE 74 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i------~eS~~I~~ 74 (194)
+.+++.|+|+-|....=.|+ ..+=.|....|+.+. .+.+...... ..+|++. .+|..| ---..|-+
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~-~p~vAaqfgi-qsIPtV~af~dGqpVdgF~G~qPesqlr~ 124 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA-EPMVAAQFGV-QSIPTVYAFKDGQPVDGFQGAQPESQLRQ 124 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc-chhHHHHhCc-CcCCeEEEeeCCcCccccCCCCcHHHHHH
Confidence 55667899999988766555 334567888888776 4444444444 6899887 566443 22357888
Q ss_pred HHHhhcCC
Q 040484 75 YIDDTWKH 82 (194)
Q Consensus 75 yL~~~~~~ 82 (194)
+|++..+.
T Consensus 125 ~ld~~~~~ 132 (304)
T COG3118 125 FLDKVLPA 132 (304)
T ss_pred HHHHhcCh
Confidence 88877664
No 243
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=47.30 E-value=75 Score=23.48 Aligned_cols=33 Identities=9% Similarity=-0.219 Sum_probs=17.1
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEcc
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEED 38 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 38 (194)
++-||--..|+-|-.....+...+-++++-.|+
T Consensus 111 rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvg 143 (200)
T TIGR03759 111 RLALFVKDDCVACDARVQRLLADNAPLDLYLVG 143 (200)
T ss_pred eEEEEeCCCChHHHHHHHHHhcCCCceeEEEec
Confidence 344554455555555444444455555555554
No 244
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=46.77 E-value=21 Score=24.18 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=16.7
Q ss_pred ceEEeecCCCchHHHHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALK 26 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~ 26 (194)
.++.|..+.||+|++..-.+.
T Consensus 8 ~i~~f~D~~Cp~C~~~~~~l~ 28 (154)
T cd03023 8 TIVEFFDYNCGYCKKLAPELE 28 (154)
T ss_pred EEEEEECCCChhHHHhhHHHH
Confidence 577888999999999865444
No 245
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=46.61 E-value=22 Score=25.38 Aligned_cols=36 Identities=3% Similarity=-0.081 Sum_probs=25.9
Q ss_pred ceEEeecCCCchHHHHHHHHH----Hh-CCcceEEEccCCC
Q 040484 6 EVKLLGRWFSVFSVRVEWALK----LK-GIKYVKIEEDTTN 41 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~----~~-gi~~~~~~v~~~~ 41 (194)
++++|++..||||....-.|. .. ++.++.+.+.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 478999999999987654443 44 7777777776543
No 246
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=45.55 E-value=44 Score=23.69 Aligned_cols=36 Identities=11% Similarity=-0.058 Sum_probs=23.9
Q ss_pred eEEee-cCCCchHHH-------HHHHHHHhCCcceEEEccCCCC
Q 040484 7 VKLLG-RWFSVFSVR-------VEWALKLKGIKYVKIEEDTTNK 42 (194)
Q Consensus 7 ~~Ly~-~~~~p~~~~-------~~~~l~~~gi~~~~~~v~~~~~ 42 (194)
+.||. ..+||-|+. ..-.++..+-+++++.|+.+..
T Consensus 36 V~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 36 VGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred EEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 45554 358887764 3444555677899999988743
No 247
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=44.69 E-value=35 Score=24.35 Aligned_cols=31 Identities=13% Similarity=-0.021 Sum_probs=20.6
Q ss_pred eEEeecCCCchHHHHHHHHH----HhCCcceEEEc
Q 040484 7 VKLLGRWFSVFSVRVEWALK----LKGIKYVKIEE 37 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~----~~gi~~~~~~v 37 (194)
+++|++..||||....-.|. ..++.++.+.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 47899999999987644444 34555554444
No 248
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=42.35 E-value=46 Score=22.44 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=28.3
Q ss_pred cCCCchHHHHHHHHHHh-----CCcceEEEccCCCCc--hhhhhhCCCCCcccEEEeCCe
Q 040484 12 RWFSVFSVRVEWALKLK-----GIKYVKIEEDTTNKS--SLLLNSNPIYKRIPVLFHNEK 64 (194)
Q Consensus 12 ~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~--~~~~~~~p~~~~vP~L~~~~~ 64 (194)
..+||.|++-.-.|... +..++++-|..+... ..+.+... -..|++.|.+.
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~--~~~p~~~D~~~ 90 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF--LPFPVYADPDR 90 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC--CCCeEEECCch
Confidence 46999998755444322 234556666554322 23444443 36888887553
No 249
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=41.58 E-value=30 Score=23.85 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=16.4
Q ss_pred ceEEeecCCCchHHHHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALK 26 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~ 26 (194)
.++.|....||+|.+..-.+.
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHH
T ss_pred EEEEEECCCCHhHHHHHHHHh
Confidence 588999999999999866553
No 250
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=41.05 E-value=26 Score=20.46 Aligned_cols=22 Identities=36% Similarity=0.182 Sum_probs=16.1
Q ss_pred ceEEeec----CCCchHHHHHHHHHH
Q 040484 6 EVKLLGR----WFSVFSVRVEWALKL 27 (194)
Q Consensus 6 ~~~Ly~~----~~~p~~~~~~~~l~~ 27 (194)
+++||.+ ..+.||+|+-.+|..
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 5678755 456799999888763
No 251
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=40.36 E-value=1.7e+02 Score=22.51 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=38.8
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH-------HHhcccHHHHHHHHHHHHHHHHHHHHHH
Q 040484 69 SLVIIEYIDDTWKHNPSILPQDPAERAMAQVLRN-------VIFSRGERQERQVKQIKDAMEVIEKVLM 130 (194)
Q Consensus 69 S~~I~~yL~~~~~~~~~l~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~le~~l~ 130 (194)
...|-..+.+.-. .. .-|+++...+.+.+-+. .+...--.++.+++++..-++.||..+.
T Consensus 6 ~qLI~~lf~RL~~-ae-~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~ 72 (247)
T PF09849_consen 6 RQLIDDLFSRLKQ-AE-AQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQ 72 (247)
T ss_pred HHHHHHHHHHHHh-cc-CCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 22 34889988888888771 1212333568888999999999999963
No 252
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=40.33 E-value=1e+02 Score=26.08 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=30.7
Q ss_pred eEEeecCCCchHHHHHHHHHH-----hCCcceEEEccCCCCchhhh-hhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKL-----KGIKYVKIEEDTTNKSSLLL-NSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~-----~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 60 (194)
+..|+.++|+.|+...=.++. .+-.+....|+.+.....+. +..-. ..+|++.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I-~~~PTii 433 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTIL 433 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC-CccceEE
Confidence 456788999999977644432 23334555565553222232 22234 5799887
No 253
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=38.42 E-value=1.2e+02 Score=22.80 Aligned_cols=73 Identities=18% Similarity=0.097 Sum_probs=50.3
Q ss_pred CceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCCeee----echHHHHHHHHhh
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNEKCF----SESLVIIEYIDDT 79 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~~~i----~eS~~I~~yL~~~ 79 (194)
.++++|....|.-|....=.|+.+|+-=.+..++......... .+-. -.+|.+..||+.+ .|-..|-+-+.-+
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~-~~~V-~SvP~Vf~DGel~~~dpVdp~~ies~~~G~ 87 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAF-EKGV-ISVPSVFIDGELVYADPVDPEEIESILSGQ 87 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHh-hcce-eecceEEEcCeEEEcCCCCHHHHHHHHcCc
Confidence 3689999999999999999999998876666666554222222 2233 4799998777654 4555666666543
No 254
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=38.35 E-value=58 Score=23.83 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=31.4
Q ss_pred EEeecCCCchHHHHHHHHHHhCC---cceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeeee
Q 040484 8 KLLGRWFSVFSVRVEWALKLKGI---KYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCFS 67 (194)
Q Consensus 8 ~Ly~~~~~p~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i~ 67 (194)
..++.++|+.|+.+-=.|...-- ....+.|+... .....+. ..+|+|. .+|..+.
T Consensus 107 V~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~----~~~~~~i-~~lPTlliyk~G~~v~ 166 (192)
T cd02988 107 VHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ----CIPNYPD-KNLPTILVYRNGDIVK 166 (192)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH----hHhhCCC-CCCCEEEEEECCEEEE
Confidence 34577899999987555543321 23334444332 1233455 6899988 5776554
No 255
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=37.88 E-value=47 Score=23.26 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=17.9
Q ss_pred CceEEeecCCCchHHHHHHHHH
Q 040484 5 AEVKLLGRWFSVFSVRVEWALK 26 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~ 26 (194)
..+..|+++.||+|.+..-.+.
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~ 38 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILE 38 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHH
Confidence 3577889999999999876664
No 256
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.69 E-value=43 Score=29.52 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=31.2
Q ss_pred CCCCCceEEeecCCCchHHHHHHHHHHhCCcceEE
Q 040484 1 MEEQAEVKLLGRWFSVFSVRVEWALKLKGIKYVKI 35 (194)
Q Consensus 1 m~~~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~ 35 (194)
|.++..+-||+.|+|.-+-.++.++.+++++|-.+
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 34566789999999999999999999999999877
No 257
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.51 E-value=30 Score=26.11 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=17.8
Q ss_pred ceEEeecCCCchHHHHHHHHHHh
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLK 28 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~ 28 (194)
++.+|+.+.||||...+--|+..
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHH
Confidence 67888999999998666655544
No 258
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=35.34 E-value=1.2e+02 Score=23.52 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=14.5
Q ss_pred eEEeecCCCchHHHHHHHHH
Q 040484 7 VKLLGRWFSVFSVRVEWALK 26 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~ 26 (194)
+..++..+||+|+...=.|.
T Consensus 170 Lv~F~AswCp~C~~~~P~L~ 189 (271)
T TIGR02740 170 LFFFFKSDCPYCHQQAPILQ 189 (271)
T ss_pred EEEEECCCCccHHHHhHHHH
Confidence 55567789999997765544
No 259
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=35.33 E-value=32 Score=25.10 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=19.5
Q ss_pred eeeechHHHHHHHHhhcC-CCCCCC
Q 040484 64 KCFSESLVIIEYIDDTWK-HNPSIL 87 (194)
Q Consensus 64 ~~i~eS~~I~~yL~~~~~-~~~~l~ 87 (194)
..|+||..|-+|+.++|+ ....+.
T Consensus 156 ~lIaDs~~I~~y~~~~y~~~~s~~I 180 (185)
T PF09314_consen 156 RLIADSKGIQDYIKERYGRKKSTFI 180 (185)
T ss_pred EEEEcCHHHHHHHHHHcCCCCcEEe
Confidence 679999999999999999 443343
No 260
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=34.94 E-value=28 Score=24.89 Aligned_cols=21 Identities=14% Similarity=-0.020 Sum_probs=16.4
Q ss_pred ceEEeecCCCchHHHHHHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWALK 26 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~ 26 (194)
++.+|..+.||||....-.+.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 578999999999986654444
No 261
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=34.78 E-value=56 Score=22.20 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=30.3
Q ss_pred ceEEeecCCCchHHHHHHH----HHHh-CCcceEEEccCC-CCchhhhhhCCCCCcccEEE--eC-Ce---eeechHHHH
Q 040484 6 EVKLLGRWFSVFSVRVEWA----LKLK-GIKYVKIEEDTT-NKSSLLLNSNPIYKRIPVLF--HN-EK---CFSESLVII 73 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~----l~~~-gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~--~~-~~---~i~eS~~I~ 73 (194)
.+.++.-++||.|++.-=. ++.. ++++.....|-. ...+.++. +-. ..+|+++ +. +. .+.+-...+
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~-~~IP~~I~~d~~~~~lg~wgerP~~~ 121 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGG-RSIPTFIFLDKDGKELGRWGERPKEV 121 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS---SSEEEEE-TT--EEEEEESS-HHH
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCC-eecCEEEEEcCCCCEeEEEcCCCHHH
Confidence 5677788999999875433 3344 565555544321 11223333 444 6899988 33 33 345555544
Q ss_pred HHH
Q 040484 74 EYI 76 (194)
Q Consensus 74 ~yL 76 (194)
+-+
T Consensus 122 ~~~ 124 (129)
T PF14595_consen 122 QEL 124 (129)
T ss_dssp H--
T ss_pred hhc
Confidence 433
No 262
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=33.81 E-value=1.3e+02 Score=20.03 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=32.9
Q ss_pred ceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhh
Q 040484 6 EVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLL 46 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~ 46 (194)
++-|++.++|+=+..++.+++..+.++..+.++......++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl 41 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDL 41 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccc
Confidence 36799999999999999999999999998888775433333
No 263
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=33.65 E-value=1.4e+02 Score=22.96 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=26.1
Q ss_pred CceEEeecCCCchHHHH----HHHHHHhCCcceEEEccC
Q 040484 5 AEVKLLGRWFSVFSVRV----EWALKLKGIKYVKIEEDT 39 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~----~~~l~~~gi~~~~~~v~~ 39 (194)
-.+.+++...||+|++- +.+.+..|+++-.+.+|.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 35677888999999874 555567788877777765
No 264
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=33.56 E-value=1.1e+02 Score=18.44 Aligned_cols=63 Identities=14% Similarity=0.338 Sum_probs=32.9
Q ss_pred chHHHHHHHHhhcCC--CCCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCC
Q 040484 68 ESLVIIEYIDDTWKH--NPSILPQDPAERAMAQVLRNVIFSRGERQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADV 145 (194)
Q Consensus 68 eS~~I~~yL~~~~~~--~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~ 145 (194)
|..-|+.++...|+. .. +-+.+. +..+..|...+..-+ +......+.++ +..++| -|
T Consensus 5 E~~~ll~~I~~aYP~~~~~-f~~~~~--k~~v~~W~~~L~d~~---------ye~v~~al~~~----i~~~kf-----PP 63 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGN-FKPTDS--KETVDLWYDMLKDYD---------YEIVMKALKKH----IATNKF-----PP 63 (71)
T ss_dssp HHHHHHHHHHHHST---TT----STH--HHHHHHHHHHHTTS----------HHHHHHHHHHH----HHH-SS-------
T ss_pred HHHHHHHHHHHHCCcchhc-cchhhH--HHHHHHHHHHHHhCC---------HHHHHHHHHHH----HHhCCC-----Cc
Confidence 667889999999984 22 444443 467888987775332 22233344444 233456 58
Q ss_pred cchhhH
Q 040484 146 GLIDIV 151 (194)
Q Consensus 146 t~aD~~ 151 (194)
|+||+.
T Consensus 64 siaeii 69 (71)
T PF11417_consen 64 SIAEII 69 (71)
T ss_dssp -GGGG-
T ss_pred CHHHHh
Confidence 888864
No 265
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.36 E-value=51 Score=20.25 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.5
Q ss_pred CCchHHHHHHHHHHhCCcceEEEc
Q 040484 14 FSVFSVRVEWALKLKGIKYVKIEE 37 (194)
Q Consensus 14 ~~p~~~~~~~~l~~~gi~~~~~~v 37 (194)
--+|++|+.-+++..|++|+...-
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecC
Confidence 347999999999999999997644
No 266
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=33.10 E-value=71 Score=20.88 Aligned_cols=53 Identities=9% Similarity=-0.070 Sum_probs=29.3
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCc-------ceEEEccCC-CCchhhhhhCCCCCcccEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIK-------YVKIEEDTT-NKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~-------~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~ 60 (194)
+..|+.++|+.|+...-.+....-. +....+|-. ....++.+.... ..+|++.
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i-~~~Pt~~ 83 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV-TGYPTLR 83 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC-CCCCEEE
Confidence 4567889999998775554432221 333344432 223344444344 5799887
No 267
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=32.80 E-value=71 Score=21.57 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=25.6
Q ss_pred CCchHHHHHHHHHH-----hCCcceEEEccCCC--CchhhhhhCCCCCcccEEEeCC
Q 040484 14 FSVFSVRVEWALKL-----KGIKYVKIEEDTTN--KSSLLLNSNPIYKRIPVLFHNE 63 (194)
Q Consensus 14 ~~p~~~~~~~~l~~-----~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~L~~~~ 63 (194)
+||.|+.-.-.+.. .+-.++.+.|.... .-.++.+... ..+|++.|.+
T Consensus 40 ~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~--~~~~~~~D~~ 94 (146)
T PF08534_consen 40 WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYG--INFPVLSDPD 94 (146)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTT--TTSEEEEETT
T ss_pred CCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhC--CCceEEechH
Confidence 79999876644432 24445555554432 2234444433 3677777643
No 268
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=32.09 E-value=51 Score=19.16 Aligned_cols=32 Identities=19% Similarity=0.036 Sum_probs=20.6
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEcc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEED 38 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 38 (194)
.++|......-++.++-+|+..||++....-.
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 36788777778999999999999999877554
No 269
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=32.04 E-value=54 Score=25.19 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=16.5
Q ss_pred eEEeecCCCchHHHHHHHHHHh
Q 040484 7 VKLLGRWFSVFSVRVEWALKLK 28 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~ 28 (194)
+-+.++-+||+|..-||.|-.+
T Consensus 62 v~~igw~gCP~~A~~sW~L~~A 83 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIA 83 (249)
T ss_pred EEEEecccCccchhhHHHHHHH
Confidence 3344788999999888877644
No 270
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=31.71 E-value=74 Score=22.39 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=23.8
Q ss_pred CCchHHHHHHHHHHhCCcceEEEccCCCCchhhh
Q 040484 14 FSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLL 47 (194)
Q Consensus 14 ~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~ 47 (194)
.-+.+++++-.|+..|++|+.........++.+.
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~ 45 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLL 45 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHH
Confidence 4578999999999999999987776654444443
No 271
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=31.48 E-value=96 Score=20.20 Aligned_cols=30 Identities=10% Similarity=-0.163 Sum_probs=23.9
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEE
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIE 36 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~ 36 (194)
-.|...+..|...-++.+++++|||+++..
T Consensus 58 ~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 58 KVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 345566778889999999999999988764
No 272
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=31.10 E-value=1.6e+02 Score=19.61 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=31.5
Q ss_pred eecCCCchHHHHHHHHHHhCCc----ceEEEccCCCCchhhhhhCCCCCcccEEE--eCCe
Q 040484 10 LGRWFSVFSVRVEWALKLKGIK----YVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEK 64 (194)
Q Consensus 10 y~~~~~p~~~~~~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~ 64 (194)
++..+||.|+.+-=.++..--. .....||.+. .+++.+.... ..+|+.+ -+|+
T Consensus 21 F~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe-v~dva~~y~I-~amPtfvffkngk 79 (114)
T cd02986 21 FGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK-VPVYTQYFDI-SYIPSTIFFFNGQ 79 (114)
T ss_pred EeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc-cHHHHHhcCc-eeCcEEEEEECCc
Confidence 4678999999985555544322 3344555554 4556555444 4689776 4554
No 273
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=30.46 E-value=1.5e+02 Score=22.61 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=36.2
Q ss_pred CceEEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhh-CCCCCcccEEEeCC
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNS-NPIYKRIPVLFHNE 63 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~-~p~~~~vP~L~~~~ 63 (194)
..+.||+.|+++=+--+++++.+.|.++....-+...+..++.++ .-. +.=.+|..|.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l-~~~~ILFIDE 109 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNL-KEGDILFIDE 109 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT---TT-EEEECT
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhc-CCCcEEEEec
Confidence 358999999999999999999999999987766444444444432 112 3334555444
No 274
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=29.58 E-value=1.4e+02 Score=18.18 Aligned_cols=53 Identities=21% Similarity=0.071 Sum_probs=34.1
Q ss_pred ceEEeecCCCchHHHHH-----HHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 6 EVKLLGRWFSVFSVRVE-----WALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~~~-----~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
.+.||-...+|.+++.. ++=++.+-+|+...||... .+++...... --.|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~-~P~lAe~~~i-vAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK-QPQLAEEDKI-VATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc-CHhHHhhCCE-EEechhh
Confidence 36788777777776653 3333557899999999876 4444444444 4567766
No 275
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=28.45 E-value=70 Score=21.31 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=24.4
Q ss_pred CCCchHHHHHHH-----HHHhCCcceEEEccCCCC--chhhhhhCCCCCcccEEEeCCe
Q 040484 13 WFSVFSVRVEWA-----LKLKGIKYVKIEEDTTNK--SSLLLNSNPIYKRIPVLFHNEK 64 (194)
Q Consensus 13 ~~~p~~~~~~~~-----l~~~gi~~~~~~v~~~~~--~~~~~~~~p~~~~vP~L~~~~~ 64 (194)
.+||.|.+..-. -++.+-.++++.|..+.. -.++.+.... .+|++.|.+.
T Consensus 34 ~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~--~~~~l~D~~~ 90 (140)
T cd03017 34 DDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGL--PFPLLSDPDG 90 (140)
T ss_pred CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC--CceEEECCcc
Confidence 568888653222 222223355666655432 2234444443 5787766543
No 276
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=27.76 E-value=89 Score=23.58 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=36.9
Q ss_pred HHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeee--echHHHHHHHHhh
Q 040484 24 ALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCF--SESLVIIEYIDDT 79 (194)
Q Consensus 24 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i--~eS~~I~~yL~~~ 79 (194)
.++..|+++++..+.+. ...+.|.--+.. +-+|+-..++..+ .....|.+.|-+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~-gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAA-EVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccc-eEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 45667899999888764 333444444455 7899999887766 3456777776543
No 277
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=27.27 E-value=1.8e+02 Score=18.78 Aligned_cols=31 Identities=3% Similarity=-0.089 Sum_probs=17.5
Q ss_pred eEEeecCCCchHHHHHHHHHHhCCcceEEEc
Q 040484 7 VKLLGRWFSVFSVRVEWALKLKGIKYVKIEE 37 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v 37 (194)
+..++.++||.|+...-.+....-.++.+.|
T Consensus 24 vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i 54 (123)
T cd03011 24 LVYFWATWCPVCRFTSPTVNQLAADYPVVSV 54 (123)
T ss_pred EEEEECCcChhhhhhChHHHHHHhhCCEEEE
Confidence 4455678899998775444332222444444
No 278
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=27.04 E-value=3.2e+02 Score=23.48 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=47.9
Q ss_pred eEEeecCCCchHHHH-------HHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEE--eCCee------eechHH
Q 040484 7 VKLLGRWFSVFSVRV-------EWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKC------FSESLV 71 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~-------~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~------i~eS~~ 71 (194)
+.-||.|||+-|.+. --.|...|=+.....||-... ..+....-. .-.|+|. .||.. .-+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v-~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEV-RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcC-CCCCeEEEEecCCcceeccCcccHHH
Confidence 456788999888764 233444444777888876542 333333333 4588887 35543 467788
Q ss_pred HHHHHHhhcCCC
Q 040484 72 IIEYIDDTWKHN 83 (194)
Q Consensus 72 I~~yL~~~~~~~ 83 (194)
|..||-.+.++.
T Consensus 124 Iv~wl~kq~gPa 135 (493)
T KOG0190|consen 124 IVKWLKKQSGPA 135 (493)
T ss_pred HHHHHHhccCCC
Confidence 999998887754
No 279
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=27.03 E-value=1.5e+02 Score=25.18 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=33.1
Q ss_pred EEeecCCCchHHHHHHHHHHhCCcceEEEccCCCCchhhhhhCCCCCcccEEEeCC
Q 040484 8 KLLGRWFSVFSVRVEWALKLKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLFHNE 63 (194)
Q Consensus 8 ~Ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~~ 63 (194)
.++.+-.|...+.+..+|+...++|....++ -. |.+|+|.+++
T Consensus 64 VFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~------------~k-g~lP~LT~~~ 106 (487)
T PF12062_consen 64 VFVESQYSQLGQDIVAILESNRFKYKVEIAS------------GK-GDLPVLTDND 106 (487)
T ss_pred EEEeeccchhhHHHHHHHHhceeeEEEEEcc------------CC-CCCCccccCC
Confidence 3445667899999999999999999988762 23 5788888553
No 280
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=26.88 E-value=64 Score=24.99 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=37.6
Q ss_pred HHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeee----echHHHHHHHHhhc
Q 040484 24 ALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCF----SESLVIIEYIDDTW 80 (194)
Q Consensus 24 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i----~eS~~I~~yL~~~~ 80 (194)
+++..|++++...+.+. ...+-|.--+.. +-+|+-..++..+ .....|.+.|-+.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~-gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~~ 273 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAA-VVTPVGEIDYRGKEPGEGEVGPVTKKLYDLL 273 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEeccee-EEEEEEEEccccccCCCCCCCHHHHHHHHHH
Confidence 45677999999988774 333444444555 8899999887766 44566666665543
No 281
>PF04827 Plant_tran: Plant transposon protein; InterPro: IPR006912 This entry represents a putative Harbinger transposase-derived nuclease, which is thought to have nuclease activity. However it does not have transposase activity [, ]. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=26.72 E-value=98 Score=22.95 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCccceecCCCCcchhhHHhhHHHH
Q 040484 110 RQERQVKQIKDAMEVIEKVLMLELKGKKFFGGDADVGLIDIVLGWLPIW 158 (194)
Q Consensus 110 ~~~~~~~~~~~~l~~le~~l~~~l~~~~fl~G~~~~t~aD~~l~~~l~~ 158 (194)
.++..++.++++|+.|..+++ .=.+|.-.=+ .-++++++.+|.+..
T Consensus 149 ~QE~~RKDVErAFGVLQaRfa--Ii~~p~r~w~-~~~l~~Im~aCiILH 194 (205)
T PF04827_consen 149 HQESARKDVERAFGVLQARFA--IIRGPARLWD-REDLANIMRACIILH 194 (205)
T ss_pred hCHHHHHHHHHHHHHHHHHHH--HhcCchhccC-HHHHHHHHHHHHHhh
Confidence 457788999999999999987 4344444446 789999999886543
No 282
>PTZ00062 glutaredoxin; Provisional
Probab=26.42 E-value=2.7e+02 Score=20.63 Aligned_cols=62 Identities=5% Similarity=-0.109 Sum_probs=38.0
Q ss_pred eecCCCchHHHHHHHHHHhCCc---ceEEEccCCCCchhhhhhCCCCCcccEEE--eCCeee-----echHHHHHHHHhh
Q 040484 10 LGRWFSVFSVRVEWALKLKGIK---YVKIEEDTTNKSSLLLNSNPIYKRIPVLF--HNEKCF-----SESLVIIEYIDDT 79 (194)
Q Consensus 10 y~~~~~p~~~~~~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~~~~i-----~eS~~I~~yL~~~ 79 (194)
++.+|||-|+.+.-.+...--. +....|+.+ .-. ..+|+++ .+|+.+ ++...+..++...
T Consensus 24 f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d---------~~V-~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~~~ 93 (204)
T PTZ00062 24 VKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA---------DAN-NEYGVFEFYQNSQLINSLEGCNTSTLVSFIRGW 93 (204)
T ss_pred EeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc---------cCc-ccceEEEEEECCEEEeeeeCCCHHHHHHHHHHH
Confidence 3468999999988877766433 444455433 223 4699877 566543 3455666666555
Q ss_pred cC
Q 040484 80 WK 81 (194)
Q Consensus 80 ~~ 81 (194)
++
T Consensus 94 ~~ 95 (204)
T PTZ00062 94 AQ 95 (204)
T ss_pred cC
Confidence 44
No 283
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=26.30 E-value=1.3e+02 Score=21.83 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=12.9
Q ss_pred eEEeecCCCchHHHHH
Q 040484 7 VKLLGRWFSVFSVRVE 22 (194)
Q Consensus 7 ~~Ly~~~~~p~~~~~~ 22 (194)
+..|+..+||+|++-.
T Consensus 73 lV~FwaswCp~C~~e~ 88 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD 88 (181)
T ss_pred EEEEECCCCHhHHHHH
Confidence 5667788999999873
No 284
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=26.08 E-value=1.2e+02 Score=21.50 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=28.7
Q ss_pred CCCCCceEEeecCCCchHHHHHHHHHHhCCcce
Q 040484 1 MEEQAEVKLLGRWFSVFSVRVEWALKLKGIKYV 33 (194)
Q Consensus 1 m~~~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~ 33 (194)
|+....+-|.+.++++-+--.+.+....|.++-
T Consensus 1 ~~~~~~I~liG~~GaGKStl~~~La~~l~~~~v 33 (172)
T PRK05057 1 MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (172)
T ss_pred CCCCCEEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 777778999999999999999999999887754
No 285
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=26.01 E-value=1.3e+02 Score=23.10 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhc
Q 040484 24 ALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTW 80 (194)
Q Consensus 24 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 80 (194)
.++..|+++++..+.+. ...+.|.--+.. +-+|+...++..+. +..+.+.|.+.+
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~-gi~pV~~id~~~~~-~g~~~~~l~~~~ 265 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLM-PVWPVRAIGETSYS-SGTLTRYLQPLC 265 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcc-eEEEEEEECCEEcc-chHHHHHHHHHH
Confidence 34566899999988764 333444444555 88999998887663 356777765543
No 286
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=25.88 E-value=94 Score=24.42 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=37.0
Q ss_pred HHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeee--chHHHHHHHHhhc
Q 040484 24 ALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFS--ESLVIIEYIDDTW 80 (194)
Q Consensus 24 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~--eS~~I~~yL~~~~ 80 (194)
+++..|+++++..+.+. ...+.|.--+.. +-+|+-..++..+. .+..|.+.|-+.+
T Consensus 228 ~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~-gi~PV~~id~~~~~~g~~g~~~~~L~~~~ 288 (306)
T PRK06606 228 LAKDLGIEVIERRITRDELYIADEVFFTGTAA-EVTPIREVDGRQIGNGKRGPITEKLQSAY 288 (306)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcc-eEEEEEEECcEECCCCCCCHHHHHHHHHH
Confidence 55677999999988764 334455545556 88999998887774 3445555554433
No 287
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=25.64 E-value=67 Score=25.61 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=41.9
Q ss_pred eecCCCchHHHHHHHHHHhCCcceE-------EEccCC-CCchhhhhhCCCCCcccEEE--eCCeeee-------chHHH
Q 040484 10 LGRWFSVFSVRVEWALKLKGIKYVK-------IEEDTT-NKSSLLLNSNPIYKRIPVLF--HNEKCFS-------ESLVI 72 (194)
Q Consensus 10 y~~~~~p~~~~~~~~l~~~gi~~~~-------~~v~~~-~~~~~~~~~~p~~~~vP~L~--~~~~~i~-------eS~~I 72 (194)
||..||+|+++..=+.+++.-.|.. ++-..+ ++...+....-. -+.|+|. -+|..+. ..-|.
T Consensus 20 FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I-~KyPTlKvfrnG~~~~rEYRg~RsVeaL 98 (375)
T KOG0912|consen 20 FYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHI-NKYPTLKVFRNGEMMKREYRGQRSVEAL 98 (375)
T ss_pred eehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcc-ccCceeeeeeccchhhhhhccchhHHHH
Confidence 4668999999998888776544332 222222 223334333444 4788887 4665443 23567
Q ss_pred HHHHHhhcC
Q 040484 73 IEYIDDTWK 81 (194)
Q Consensus 73 ~~yL~~~~~ 81 (194)
++|+..+..
T Consensus 99 ~efi~kq~s 107 (375)
T KOG0912|consen 99 IEFIEKQLS 107 (375)
T ss_pred HHHHHHHhc
Confidence 788776644
No 288
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=25.52 E-value=1.2e+02 Score=21.53 Aligned_cols=31 Identities=13% Similarity=-0.087 Sum_probs=24.9
Q ss_pred CCchHHHHHHHHHHhCCcceEEEccCCCCch
Q 040484 14 FSVFSVRVEWALKLKGIKYVKIEEDTTNKSS 44 (194)
Q Consensus 14 ~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~ 44 (194)
.-|.++++...|+..|++|+......-..++
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~ 40 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAHRTPE 40 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcccCHH
Confidence 3468899999999999999998887754333
No 289
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=25.51 E-value=1.1e+02 Score=15.82 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=19.5
Q ss_pred CcccEEEeCCeeeechHHHHHHHH
Q 040484 54 KRIPVLFHNEKCFSESLVIIEYID 77 (194)
Q Consensus 54 ~~vP~L~~~~~~i~eS~~I~~yL~ 77 (194)
|.+|....++........|.++++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 678887777888888888888875
No 290
>PRK13356 aminotransferase; Provisional
Probab=25.04 E-value=1e+02 Score=23.94 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=37.4
Q ss_pred HHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeechHHHHHHHHhhc
Q 040484 24 ALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSESLVIIEYIDDTW 80 (194)
Q Consensus 24 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 80 (194)
+++..|+++++..+.+. ...+.|..-+.. +-+|+-..++..+. ...|.+.|-+.+
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~-gi~PV~~id~~~~~-~g~~~~~l~~~~ 278 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYS-KVVPVTRFDDRSLQ-PGPVTRRARELY 278 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChh-eEEEEEEECCEEec-CChHHHHHHHHH
Confidence 55677999999988764 334455555556 78999998887763 346666665443
No 291
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=24.78 E-value=92 Score=20.81 Aligned_cols=25 Identities=4% Similarity=0.118 Sum_probs=19.1
Q ss_pred CcccEEE-eCCeeeechHHHHHHHHh
Q 040484 54 KRIPVLF-HNEKCFSESLVIIEYIDD 78 (194)
Q Consensus 54 ~~vP~L~-~~~~~i~eS~~I~~yL~~ 78 (194)
.++|.++ |+..++.+...|.+.+..
T Consensus 82 ~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 82 TKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred cccCEEEEcCCeEEecccHHHHHHHH
Confidence 5899998 666788888877776654
No 292
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=24.60 E-value=97 Score=20.42 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=27.3
Q ss_pred EeecCCCchHHHHHHHH-----HHhCCcceEEEccCC-----CCch---hhhhhCCCCCcccEEEeCC
Q 040484 9 LLGRWFSVFSVRVEWAL-----KLKGIKYVKIEEDTT-----NKSS---LLLNSNPIYKRIPVLFHNE 63 (194)
Q Consensus 9 Ly~~~~~p~~~~~~~~l-----~~~gi~~~~~~v~~~-----~~~~---~~~~~~p~~~~vP~L~~~~ 63 (194)
.++..+||.|.+-.-.| ++....+.++.|... ...+ ++.+... -..|++.|..
T Consensus 29 ~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~D~~ 94 (126)
T cd03012 29 DFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYG--ITYPVANDND 94 (126)
T ss_pred EEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcC--CCCCEEECCc
Confidence 33567899988754333 333445666666432 1122 2333333 3578776644
No 293
>PRK13949 shikimate kinase; Provisional
Probab=23.51 E-value=1.3e+02 Score=21.36 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=26.7
Q ss_pred CCceEEeecCCCchHHHHHHHHHHhCCcceE
Q 040484 4 QAEVKLLGRWFSVFSVRVEWALKLKGIKYVK 34 (194)
Q Consensus 4 ~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~ 34 (194)
|.++.|.+.++|+-+--.+++.+..|.+|-.
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 3579999999999999999999999977554
No 294
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=23.45 E-value=2.5e+02 Score=19.51 Aligned_cols=32 Identities=13% Similarity=-0.013 Sum_probs=21.3
Q ss_pred eecCCCchHHHHHHHHHH------------hCCcceEEEccCCC
Q 040484 10 LGRWFSVFSVRVEWALKL------------KGIKYVKIEEDTTN 41 (194)
Q Consensus 10 y~~~~~p~~~~~~~~l~~------------~gi~~~~~~v~~~~ 41 (194)
|+..+||.|++-.=.|.. .+-.++++.|+.+.
T Consensus 32 FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~ 75 (146)
T cd03008 32 FGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ 75 (146)
T ss_pred EECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC
Confidence 345789999988766643 12247788777664
No 295
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=22.58 E-value=1.8e+02 Score=17.28 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.1
Q ss_pred CcccEEEeCCeeeechHHHHHHHHh
Q 040484 54 KRIPVLFHNEKCFSESLVIIEYIDD 78 (194)
Q Consensus 54 ~~vP~L~~~~~~i~eS~~I~~yL~~ 78 (194)
-+=|++...| ...|-.+|.+||.+
T Consensus 14 M~dPVi~~~G-~tyer~~I~~~l~~ 37 (73)
T PF04564_consen 14 MRDPVILPSG-HTYERSAIERWLEQ 37 (73)
T ss_dssp -SSEEEETTS-EEEEHHHHHHHHCT
T ss_pred hhCceeCCcC-CEEcHHHHHHHHHc
Confidence 3568888777 88999999999988
No 296
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=22.38 E-value=1.2e+02 Score=23.62 Aligned_cols=56 Identities=9% Similarity=0.127 Sum_probs=36.9
Q ss_pred HHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeec--hHHHHHHHHhhc
Q 040484 24 ALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSE--SLVIIEYIDDTW 80 (194)
Q Consensus 24 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~e--S~~I~~yL~~~~ 80 (194)
++...|+++++..+.+. ...+-|...+.. +-+|+-..++..+.. ...|.+.|-+.+
T Consensus 220 la~~~g~~v~e~~i~~~eL~~adevfltns~~-gv~PV~~id~~~~~~~~~g~~~~~l~~~~ 280 (298)
T TIGR01122 220 LAKELGIEVVEQPISREELYTADEAFFTGTAA-EITPIREVDGRKIGNGRRGPVTKKLQEAF 280 (298)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcc-eEEEEEEECCEECCCCCCChHHHHHHHHH
Confidence 46677999999988774 334455545556 899999988877642 345555554433
No 297
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=22.07 E-value=60 Score=21.17 Aligned_cols=15 Identities=13% Similarity=-0.020 Sum_probs=13.5
Q ss_pred ceEEeecCCCchHHH
Q 040484 6 EVKLLGRWFSVFSVR 20 (194)
Q Consensus 6 ~~~Ly~~~~~p~~~~ 20 (194)
++++|+-..||.|++
T Consensus 2 ~v~vyyESlCPd~~~ 16 (108)
T PF03227_consen 2 NVEVYYESLCPDCRR 16 (108)
T ss_pred EEEEEEEecCHhHHH
Confidence 589999999999986
No 298
>PRK00131 aroK shikimate kinase; Reviewed
Probab=21.90 E-value=1.7e+02 Score=20.19 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=28.2
Q ss_pred CCCCCceEEeecCCCchHHHHHHHHHHhCCcceE
Q 040484 1 MEEQAEVKLLGRWFSVFSVRVEWALKLKGIKYVK 34 (194)
Q Consensus 1 m~~~~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~ 34 (194)
|-+...+-|.+.++|+=+...+.+.+..|.++-.
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 5555678899999999999999999999876554
No 299
>PRK13947 shikimate kinase; Provisional
Probab=21.22 E-value=1.5e+02 Score=20.58 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=26.4
Q ss_pred CceEEeecCCCchHHHHHHHHHHhCCcceE
Q 040484 5 AEVKLLGRWFSVFSVRVEWALKLKGIKYVK 34 (194)
Q Consensus 5 ~~~~Ly~~~~~p~~~~~~~~l~~~gi~~~~ 34 (194)
.++.|.+.++|+=+...+.+.+.+|.+|-.
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999999988744
No 300
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=21.03 E-value=1.4e+02 Score=22.98 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=37.9
Q ss_pred HHHHhCCcceEEEccCC---CCchhhhhhCCCCCcccEEEeCCeeeec--hHHHHHHHHhhc
Q 040484 24 ALKLKGIKYVKIEEDTT---NKSSLLLNSNPIYKRIPVLFHNEKCFSE--SLVIIEYIDDTW 80 (194)
Q Consensus 24 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~~~~i~e--S~~I~~yL~~~~ 80 (194)
+++..|+++++..+.+. ...+.|.-.+.. +-+|+-..++..+.. ...+.+.|.+.+
T Consensus 211 ~a~~~g~~v~e~~i~~~el~~ade~fltns~~-gi~PV~~id~~~~~~~~~g~~~~~L~~~~ 271 (276)
T TIGR01121 211 CAEENGIPVKEEPFTKEELLNADEVFVSSTTA-EITPVIEIDGQQIGDGKPGPWTRQLQKAF 271 (276)
T ss_pred HHHHCCCeEEEEeCCHHHHhcCCEEEEecCcc-cEEEEEEECCEECCCCCCCHHHHHHHHHH
Confidence 56777999999988764 334455545555 789999988776632 346666665544
No 301
>PRK09301 circadian clock protein KaiB; Provisional
Probab=20.60 E-value=2.6e+02 Score=18.32 Aligned_cols=58 Identities=22% Similarity=0.071 Sum_probs=37.0
Q ss_pred CCCCC--ceEEeecCCCchHHHHHHHH----H-HhCCcceEEEccCCCCchhhhhhCCCCCcccEEE
Q 040484 1 MEEQA--EVKLLGRWFSVFSVRVEWAL----K-LKGIKYVKIEEDTTNKSSLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 1 m~~~~--~~~Ly~~~~~p~~~~~~~~l----~-~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 60 (194)
|+++. .++||-...+|.+++..--+ + +.+-.|+...||... .+++...... --.|+|+
T Consensus 1 ~~~~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~-qPelAE~~~I-vATPTLI 65 (103)
T PRK09301 1 MSPRKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLK-NPQLAEEDKI-LATPTLA 65 (103)
T ss_pred CCCCceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc-CHhHHhHCCe-EEecHHh
Confidence 44444 36788877788777653322 2 445559999999876 4455555555 5678877
No 302
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=20.10 E-value=5.9e+02 Score=22.24 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=28.9
Q ss_pred EeecCCCchHHHHHHHH-------HHhCCcceEEEccCCCCc---hhhhhhCCCCCcccEEE
Q 040484 9 LLGRWFSVFSVRVEWAL-------KLKGIKYVKIEEDTTNKS---SLLLNSNPIYKRIPVLF 60 (194)
Q Consensus 9 Ly~~~~~p~~~~~~~~l-------~~~gi~~~~~~v~~~~~~---~~~~~~~p~~~~vP~L~ 60 (194)
-++.++|+.|+...-.. +..+ .+....+|..... .++.+.... ..+|++.
T Consensus 480 dF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v-~g~Pt~~ 539 (571)
T PRK00293 480 DLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNV-LGLPTIL 539 (571)
T ss_pred EEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCC-CCCCEEE
Confidence 46778999998764321 1222 4666667765322 344443334 4699887
Done!