BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040485
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1SRS|B Chain B, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1HBX|A Chain A, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|B Chain B, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|D Chain D, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|E Chain E, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 92
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 3 GKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYI 62
GKKT+ R KI+M+ I+N+ R TFSKR++GI KKA E TLT + + ++V S++G Y
Sbjct: 6 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 65
Query: 63 FLHNDNIHPLVKA 75
F + P++ +
Sbjct: 66 F-ATRKLQPMITS 77
>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
pdb|1K6O|C Chain C, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 103
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 3 GKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYI 62
GKKT+ R KI+M+ I+N+ R TFSKR++GI KKA E TLT + + ++V S++G Y
Sbjct: 5 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 64
Query: 63 FLHNDNIHPLVKA 75
F + P++ +
Sbjct: 65 F-ATRKLQPMITS 76
>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|B Chain B, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 100
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 7 KRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIF 63
K R+KIE+K IEN+ R +TFSKR+ GI KKA E LT + + ++V S++G Y F
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF 72
>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|B Chain B, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|C Chain C, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|D Chain D, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
Length = 71
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R+KI++ +I +E +R +TF+KR+ G+ KKA E L IA+++F+ S K + + D
Sbjct: 2 RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 69 IHPLVK 74
L+K
Sbjct: 62 DKVLLK 67
>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|B Chain B, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|I Chain I, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|J Chain J, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3P57|A Chain A, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|B Chain B, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|C Chain C, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|D Chain D, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|I Chain I, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|J Chain J, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
Length = 90
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R+KI++ +I +E +R +TF+KR+ G+ KKA E L IA+++F+ S K + + D
Sbjct: 2 RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 69 IHPLVK 74
L+K
Sbjct: 62 DKVLLK 67
>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|B Chain B, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|C Chain C, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|D Chain D, Crystal Structure Of Mef2a Core Bound To Dna
Length = 77
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R+KI++ +I +E +R +TF+KR+ G+ KKA E L IA+++F+ S K + + D
Sbjct: 2 RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 69 IHPLVK 74
L+K
Sbjct: 62 DKVLLK 67
>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
pdb|1C7U|B Chain B, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
Length = 85
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R+KI++ +I +E +R +TF+KR+ G+ KKA E L + IA+++F+ S K + + D
Sbjct: 2 RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDM 61
Query: 69 IHPLVK 74
L+K
Sbjct: 62 DKVLLK 67
>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
pdb|1N6J|B Chain B, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R+KI++ +I ++ +R +TF+KR+ G+ KKA E L IA+++F+ + + + + D
Sbjct: 2 RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDM 61
Query: 69 IHPLVKAYRHARINELNQQHNDLL 92
L+K ++ +E ++ + D+L
Sbjct: 62 DRVLLKYTEYSEPHE-SRTNTDIL 84
>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|Q Chain Q, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|R Chain R, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|S Chain S, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R+KI++ +I ++ +R +TF+KR+ G+ KKA E L IA+++F+ + + + + D
Sbjct: 3 RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDM 62
Query: 69 IHPLVKAYRHARINELNQQHNDLL 92
L+K ++ +E ++ + D+L
Sbjct: 63 DRVLLKYTEYSEPHE-SRTNTDIL 85
>pdb|3EK1|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|B Chain B, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|C Chain C, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|D Chain D, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|E Chain E, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|F Chain F, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|G Chain G, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|H Chain H, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
Length = 504
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 28 SKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKP 60
+K R+GI +K + + + IA+++ S+ GKP
Sbjct: 91 AKERAGILRKWFDLIIANADDIALIMTSEQGKP 123
>pdb|2J7A|A Chain A, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|B Chain B, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|D Chain D, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|E Chain E, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|G Chain G, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|H Chain H, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|J Chain J, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|K Chain K, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|M Chain M, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|N Chain N, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|P Chain P, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
pdb|2J7A|Q Chain Q, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex From Desulfovibrio Vulgaris
Length = 500
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 63 FLHNDNIHPLVKAYRHAR 80
F NDN++PL + YRHA+
Sbjct: 58 FNKNDNVNPLPEGYRHAQ 75
>pdb|2WWF|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Tmp And Adp
pdb|2WWF|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Tmp And Adp
pdb|2WWF|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Tmp And Adp
pdb|2WWG|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Dgmp And Adp
pdb|2WWG|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Dgmp And Adp
pdb|2WWG|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Dgmp And Adp
pdb|2WWH|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Ap5dt
pdb|2WWH|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Ap5dt
pdb|2WWH|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Ap5dt
pdb|2WWI|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Aztmp And Adp
pdb|2WWI|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Aztmp And Adp
pdb|2WWI|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Aztmp And Adp
Length = 212
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 2 AGKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPY 61
+GK T+ + +E K N + + + F R +GI + S+++ + +S
Sbjct: 21 SGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENS-------------- 66
Query: 62 IFLHNDNIHPLVKAYRHARINEL 84
+ N+ IH L A R +NE+
Sbjct: 67 --MSNETIHLLFSANRWEHMNEI 87
>pdb|2VR0|A Chain A, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex Bound To The Hqno Inhibitor
pdb|2VR0|B Chain B, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex Bound To The Hqno Inhibitor
pdb|2VR0|D Chain D, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex Bound To The Hqno Inhibitor
pdb|2VR0|E Chain E, Crystal Structure Of Cytochrome C Nitrite Reductase
Nrfha Complex Bound To The Hqno Inhibitor
Length = 524
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 63 FLHNDNIHPLVKAYRHAR 80
F NDN++PL + YRHA+
Sbjct: 82 FNKNDNVNPLPEGYRHAQ 99
>pdb|1XUU|A Chain A, Crystal Structure Of Sialic Acid Synthase (Neub) In
Complex With Mn2+ And Malate From Neisseria Meningitidis
pdb|1XUZ|A Chain A, Crystal Structure Analysis Of Sialic Acid Synthase
(Neub)from Neisseria Meningitidis, Bound To Mn2+,
Phosphoenolpyruvate, And N- Acetyl Mannosaminitol
pdb|2ZDR|A Chain A, Crystal Structure Of Sialic Acid Synthase (Neub) From
Neisseria Meningitidis In Complex With Mg2+ And (4s)-2-
Methyl-2,4-Pentanediol
pdb|3CM4|A Chain A, Crystal Structure Of Metal-Free Sialic Acid Synthase
(Neub) From Neisseria Meningitidis In Complex With
Malate
Length = 349
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 43 TLTSSAIAIVVFSQSGKPYIFLHNDNIHPLVKAYRHARINELN 85
++ S ++ + ++G PY LH NI+P Y R+ +N
Sbjct: 159 SIESIKKSVEIIREAGVPYALLHCTNIYP--TPYEDVRLGGMN 199
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 58 GKPYIFLHNDNIHPLVKAYRH 78
GK ++ +H ++HPL + Y H
Sbjct: 579 GKRFVVMHLSHLHPLAERYAH 599
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 70 HPLVKAYRHARINELNQQHNDLLR 93
+P+ +AYR ARIN + + N++ R
Sbjct: 382 YPIERAYRDARINRIFEGTNEINR 405
>pdb|1N6D|A Chain A, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|B Chain B, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|C Chain C, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|D Chain D, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|E Chain E, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|F Chain F, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6E|A Chain A, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|C Chain C, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|E Chain E, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|G Chain G, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|I Chain I, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|K Chain K, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6F|A Chain A, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|B Chain B, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|C Chain C, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|D Chain D, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|E Chain E, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|F Chain F, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
Length = 1071
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 6 TKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQS 57
T++ +KIE+ +E+ +DR+I+ K A +F L IA V Q+
Sbjct: 300 TEKIEKIEIGDLESPEDRIISIPS------KFAEDFSPLDGDLIAFVSRGQA 345
>pdb|1OAH|A Chain A, Cytochrome C Nitrite Reductase From Desulfovibrio
Desulfuricans Atcc 27774: The Relevance Of The Two
Calcium Sites In The Structure Of The Catalytic Subunit
(Nrfa).
pdb|1OAH|B Chain B, Cytochrome C Nitrite Reductase From Desulfovibrio
Desulfuricans Atcc 27774: The Relevance Of The Two
Calcium Sites In The Structure Of The Catalytic Subunit
(Nrfa)
Length = 519
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 66 NDNIHPLVKAYRHAR 80
NDN++PL K ++HA+
Sbjct: 82 NDNVNPLPKGFKHAQ 96
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 6 TKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQS 57
T++ +KIE+ +E+ +DR+I+ K A +F L IA V Q+
Sbjct: 274 TEKIEKIEIGDLESPEDRIISIPS------KFAEDFSPLDGDLIAFVSRGQA 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,488,934
Number of Sequences: 62578
Number of extensions: 76127
Number of successful extensions: 221
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 21
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)