BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040485
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana
GN=AGL62 PE=1 SV=1
Length = 299
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 19/125 (15%)
Query: 4 KKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQS------ 57
KK+K RQKIEM K++NE + +TFSKRRSG++KKASE TL + +AIVVFS
Sbjct: 3 KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62
Query: 58 GKPYI------FLHNDNIHP-------LVKAYRHARINELNQQHNDLLRQLDEEKEQEKM 104
G P + F++N+ + P L + R++ + +LN +L QL+ EK++
Sbjct: 63 GHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDE 122
Query: 105 LKQMR 109
LK++R
Sbjct: 123 LKKIR 127
>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana
GN=AGL61 PE=1 SV=1
Length = 264
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 17/118 (14%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
RQKI M KI+ E R +TFSKRR+G++KKASE TL + I I+VFS + KP+ F H +
Sbjct: 64 RQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGH-PS 122
Query: 69 IHPLVKAY----------------RHARINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110
+ ++ Y A ELN Q +L +++EEK++ + +++MR+
Sbjct: 123 VESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRK 180
>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1
Length = 259
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLH-ND 67
R KIE+K+IEN +R +TFSKRR G+ KKA+E L + + +V+FS +GK + +
Sbjct: 3 RGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPAC 62
Query: 68 NIHPLVKAYRHA---RINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110
++ L++ Y+HA E+N LL + E EK+ +RR
Sbjct: 63 SLRELIEQYQHATNSHFEEINHDQQILLEMTRMKNEMEKLETGIRR 108
>sp|Q9S7Q7|FLC_ARATH MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC
PE=2 SV=1
Length = 196
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R+K+E+K+IEN+ R +TFSKRR+G+ +KA + L +++A++V S SGK Y F DN
Sbjct: 3 RKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDN 62
Query: 69 IHPLVKAYRHARINELNQQHNDLLRQLDEE 98
+ ++ Y +QH D L+ LD +
Sbjct: 63 LVKILDRY--------GKQHADDLKALDHQ 84
>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana
GN=AGL14 PE=1 SV=2
Length = 221
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K EMK+IEN R +TFSKRR+G+ KKA E L + +A+++FS GK Y F + +
Sbjct: 3 RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSS 62
Query: 69 IHPLVKAYRHARINELNQQH 88
I V+ Y RI +L H
Sbjct: 63 IPKTVERY-QKRIQDLGSNH 81
>sp|Q2V0P1|MAD58_ORYSJ MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica
GN=MADS58 PE=2 SV=1
Length = 272
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 3 GKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYI 62
+K R KIE+K+IEN +R +TF KRRSG+ KKA E L + +A+VVFS G+ Y
Sbjct: 39 AEKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYE 98
Query: 63 FLHNDNIHPLVKAYRHAR--------INELNQQH 88
+ N+++ ++ Y+ A + E+N QH
Sbjct: 99 Y-SNNSVKETIERYKKANSDTSNASTVAEINAQH 131
>sp|Q9FPN7|AGL31_ARATH Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana
GN=AGL31 PE=2 SV=2
Length = 196
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R+K+E+K+IEN+ R +TFSKRR+G+ +KA + L S+IA++V S SGK Y DN
Sbjct: 3 RKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDN 62
Query: 69 IHPLVKAYRHARINEL 84
+ ++ Y +EL
Sbjct: 63 MSKIIDRYEIHHADEL 78
>sp|Q2QW53|MAD13_ORYSJ MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica
GN=MADS13 PE=1 SV=2
Length = 270
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R +IE+K+IEN R +TF KRR+G+ KKA E L + +A++VFS G+ Y + +N+N
Sbjct: 3 RGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNN 62
Query: 69 IHPLVKAYRHA 79
+ + Y+ A
Sbjct: 63 VKATIDRYKKA 73
>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15
PE=3 SV=1
Length = 264
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIF 63
R KIE+K+IEN + R +TFSKRR+G+ KKA E L + +A++VFS+SGK + F
Sbjct: 3 RGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF 57
>sp|Q8RYD9|TT16_ARATH Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1
SV=1
Length = 252
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+KKIEN+ R +TFSKRR+G+ KK E L + I ++VFS +GK F N
Sbjct: 3 RGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQN 62
Query: 69 IHP-LVKAYRHARINELNQQHND 90
P L+ Y H L H+D
Sbjct: 63 RMPQLIDRYLHTNGLRLPDHHDD 85
>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana
GN=AGL11 PE=1 SV=1
Length = 230
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN +R +TF KRR+G+ KKA E L + +A++VFS G+ Y + N+N
Sbjct: 3 RGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA-NNN 61
Query: 69 IHPLVKAYRHA 79
I ++ Y+ A
Sbjct: 62 IRSTIERYKKA 72
>sp|Q2QW55|MAD33_ORYSJ MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica
GN=MADS33 PE=2 SV=2
Length = 202
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K++M++IEN R +TF KRR G+ KKA E L + + +++FS GK + N N
Sbjct: 3 RGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGN 62
Query: 69 IHPLVKAYR 77
+H LV+ Y+
Sbjct: 63 MHNLVERYQ 71
>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana
GN=AGL15 PE=1 SV=1
Length = 268
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIF 63
R KIE+K+IEN + R +TFSKRRSG+ KKA E L + +A++VFS+SGK + +
Sbjct: 3 RGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY 57
>sp|Q40702|MADS2_ORYSJ MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica
GN=MADS2 PE=2 SV=1
Length = 209
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFL 64
R KIE+K+IEN +R +TFSKRRSGI KKA E L + + +V+FS +GK Y +
Sbjct: 3 RGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYC 58
>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica
GN=MADS3 PE=2 SV=1
Length = 236
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 9/88 (10%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN +R +TF KRR+G+ KKA E L + +A++VFS G+ Y + N++
Sbjct: 3 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNS 61
Query: 69 IHPLVKAYRHAR--------INELNQQH 88
+ V+ Y+ A + E+N QH
Sbjct: 62 VKSTVERYKKANSDTSNSGTVAEVNAQH 89
>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1
Length = 220
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 22/118 (18%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIF----- 63
R+KI +KKI+N R +TFSKRR GI+KKA E L + +A+++FS +GK + F
Sbjct: 3 REKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSSRM 62
Query: 64 --------LHNDNIHPLVK-AYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112
LH NI+ L+ H R+ N L +L KE E KQ+R+++
Sbjct: 63 RDILGRYSLHASNINKLMDPPSTHLRLENCN------LSRL--SKEVEDKTKQLRKLR 112
>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1
Length = 237
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 7/108 (6%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLH-ND 67
R KIE+K+IEN +R +TFSKRR G+ KKA E L + + +++FS SGK + + +
Sbjct: 3 RGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASS 62
Query: 68 NIHPLVKAYR---HARINELNQQHNDLLRQLDEEK-EQEKMLKQMRRV 111
++ +++ Y+ ARI E + QH L ++ K E EK+ +RR+
Sbjct: 63 SMKKIIERYQKVSGARITEYDNQH--LYCEMTRMKNENEKLQTNIRRM 108
>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1
Length = 233
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R ++E+K+IEN+ +R +TF+KRR+G+ KKA E L + +A++VFS GK Y F
Sbjct: 3 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSC 62
Query: 69 IHPLVKAYRHARINEL 84
++ ++ Y+ L
Sbjct: 63 MNKTLERYQRCSYGSL 78
>sp|Q07474|MADS2_PETHY Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2
SV=1
Length = 212
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN +R +T+SKRR+GI KKA E L + +++++F SGK + +
Sbjct: 3 RGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPST 62
Query: 69 IHP-LVKAYRHARINEL-NQQHNDLLRQLDE-EKEQEKMLKQMRRVK 112
P ++ Y+ L + +H +L ++D +KE + M ++R +K
Sbjct: 63 TLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLK 109
>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica
GN=MADS6 PE=1 SV=1
Length = 250
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R ++E+K+IEN+ +R +TFSKRR+G+ KKA E L + +A+++FS GK Y F +
Sbjct: 3 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAG 61
Query: 69 IHPLVKAYRHARIN 82
I ++ Y+H N
Sbjct: 62 ITKTLERYQHCCYN 75
>sp|Q9SI38|ANR1_ARATH MADS-box transcription factor ANR1 OS=Arabidopsis thaliana
GN=ANR1 PE=1 SV=1
Length = 234
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KI +++I+N R +TFSKRRSG+ KKA E L + + +++FS +GK Y + N +
Sbjct: 3 RGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASNSS 62
Query: 69 IHPLVKAY 76
+ +++ Y
Sbjct: 63 MKTIIERY 70
>sp|Q40168|AG_SOLLC Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1
PE=2 SV=1
Length = 248
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN +R +TF KRR+G+ KKA E L + +A+VVFS G+ Y + N++
Sbjct: 19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYA-NNS 77
Query: 69 IHPLVKAYRHA 79
+ ++ Y+ A
Sbjct: 78 VKATIERYKKA 88
>sp|P29382|SEP1_ARATH Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1
PE=1 SV=2
Length = 251
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R ++E+K+IEN+ +R +TF+KRR+G+ KKA E L + +A+++FS GK Y F + N
Sbjct: 3 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSN 62
Query: 69 IHPLVKAYRHA 79
+ + Y+
Sbjct: 63 MLKTLDRYQKC 73
>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana
GN=AGL18 PE=2 SV=1
Length = 256
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIF 63
R +IE+KKIEN + R +TFSKRR+G+ KKA E L + +A+++FS +GK Y F
Sbjct: 3 RGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDF 57
>sp|P29385|AGL5_ARATH Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana
GN=AGL5 PE=1 SV=1
Length = 246
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN +R +TF KRR+G+ KKA E L + +A+V+FS G+ Y + N++
Sbjct: 18 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA-NNS 76
Query: 69 IHPLVKAYRHARINELN 85
+ ++ Y+ A + +N
Sbjct: 77 VRGTIERYKKACSDAVN 93
>sp|Q10CQ1|MAD14_ORYSJ MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica
GN=MADS14 PE=1 SV=2
Length = 246
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K+++K+IEN+ +R +TFSKRRSG+ KKA+E L + +A+++FS GK Y + +
Sbjct: 3 RGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSC 62
Query: 69 IHPLVKAY 76
+ +++ Y
Sbjct: 63 MDKILERY 70
>sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI
PE=1 SV=1
Length = 208
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 40/51 (78%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGK 59
R KIE+K+IEN ++R++TFSKRR+G+ KKA E L + +A+++F+ +GK
Sbjct: 3 RGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGK 53
>sp|P29381|AGL1_ARATH Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana
GN=AGL1 PE=1 SV=1
Length = 248
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN +R +TF KRR+G+ KKA E L + +A+V+FS G+ Y + N++
Sbjct: 18 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA-NNS 76
Query: 69 IHPLVKAYRHARINELN 85
+ ++ Y+ A + +N
Sbjct: 77 VRGTIERYKKACSDAVN 93
>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica
GN=MADS29 PE=2 SV=1
Length = 260
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLH-ND 67
R KIE+K+IEN +R +TFSKRR G+ KKA+E L + + +V+FS +GK + +
Sbjct: 3 RGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTC 62
Query: 68 NIHPLVKAYR---HARINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110
++ L++ Y+ + E+N + E EK+ +RR
Sbjct: 63 SLRELIEHYQTVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRR 108
>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana
GN=AGL19 PE=1 SV=1
Length = 219
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K EMK+IEN R +TFSKRR+G+ KKA E L + +A+V+FS K Y F + +
Sbjct: 3 RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF-SSSS 61
Query: 69 IHPLVKAYRHARINELNQQH 88
I ++ Y+ RI E+ H
Sbjct: 62 IAATIERYQR-RIKEIGNNH 80
>sp|Q8RU31|MAD21_ORYSJ MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica
GN=MADS21 PE=2 SV=1
Length = 265
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN+ R +TF KRR+G+ KKA E L + IA++VFS G+ Y F + ++
Sbjct: 3 RGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNS 62
Query: 69 IHPLVKAYRHA 79
++ Y+ A
Sbjct: 63 TRSTIERYKKA 73
>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1
Length = 214
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K +MK+IEN R +TFSKRR+G+ KKA E L + +++++FS GK Y F ++
Sbjct: 3 RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNM 62
Query: 69 IHPLVKAYRHAR-------INELNQQH 88
+ + RH + ++E N QH
Sbjct: 63 QDTIDRYLRHTKDRVSTKPVSEENMQH 89
>sp|P0C5B1|MAD14_ORYSI MADS-box transcription factor 14 OS=Oryza sativa subsp. indica
GN=MADS14 PE=2 SV=1
Length = 246
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K+++K+IEN +R +TFSKRRSG+ KKA+E L + +A+++FS GK Y + +
Sbjct: 3 RGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSC 62
Query: 69 IHPLVKAY 76
+ +++ Y
Sbjct: 63 MDKILERY 70
>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1
SV=1
Length = 242
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN +R +TF KRR+G+ KKA E L + +A++VFS G+ Y + N++
Sbjct: 19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNS 77
Query: 69 IHPLVKAYRHA 79
+ ++ Y+ A
Sbjct: 78 VKATIERYKKA 88
>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica
GN=MADS16 PE=1 SV=2
Length = 224
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLH-ND 67
R KIE+K+IEN +R +T+SKRR+GI KKA E L + +AI++FS +GK + F +
Sbjct: 3 RGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPST 62
Query: 68 NIHPLVKAYRHARINELN-QQHNDLLRQLDEEKEQEKMLK 106
+I + Y+ A L +Q+ ++ R L K+ + L+
Sbjct: 63 DIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLR 102
>sp|P23790|SRF_XENLA Serum response factor OS=Xenopus laevis GN=srf PE=2 SV=1
Length = 448
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 3 GKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYI 62
GKKT+ R KI+M+ I+N+ R TFSKR++GI KKA E TLT + + ++V S++G Y
Sbjct: 92 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 151
Query: 63 FLHNDNIHPLVKA 75
F + P++ +
Sbjct: 152 FA-TRKLQPMITS 163
>sp|Q43585|AG_TOBAC Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2
SV=1
Length = 248
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN +R +TF KRR+G+ KKA E L + +A++VFS G+ Y + N++
Sbjct: 19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNS 77
Query: 69 IHPLVKAYRHA 79
+ ++ Y+ A
Sbjct: 78 VKATIERYKKA 88
>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2
SV=1
Length = 252
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN +R +TF KRR+G+ KKA E L + +A++VFS G+ Y + N++
Sbjct: 19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNS 77
Query: 69 IHPLVKAYRHA 79
+ ++ Y+ A
Sbjct: 78 VKGTIERYKKA 88
>sp|P11831|SRF_HUMAN Serum response factor OS=Homo sapiens GN=SRF PE=1 SV=1
Length = 508
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 3 GKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYI 62
GKKT+ R KI+M+ I+N+ R TFSKR++GI KKA E TLT + + ++V S++G Y
Sbjct: 137 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 196
Query: 63 F 63
F
Sbjct: 197 F 197
>sp|Q0DEB8|MADS5_ORYSJ MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica
GN=MADS5 PE=1 SV=1
Length = 225
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K+E+K+IEN+ R +TF+KRR+G+ KKA E L + +A+++FS G+ + F +
Sbjct: 3 RGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSC 62
Query: 69 IHPLVKAYRHARIN 82
++ ++ YR N
Sbjct: 63 MYKTLERYRSCNYN 76
>sp|A2Y9P0|MADS5_ORYSI MADS-box transcription factor 5 OS=Oryza sativa subsp. indica
GN=MADS5 PE=2 SV=1
Length = 225
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K+E+K+IEN+ R +TF+KRR+G+ KKA E L + +A+++FS G+ + F +
Sbjct: 3 RGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSC 62
Query: 69 IHPLVKAYRHARIN 82
++ ++ YR N
Sbjct: 63 MYKTLERYRSCNYN 76
>sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2
PE=1 SV=1
Length = 250
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R ++E+K+IEN+ +R +TF+KRR+G+ KKA E L + ++++VFS GK Y F N
Sbjct: 3 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSN 62
Query: 69 IHPLVKAYR 77
+ ++ Y+
Sbjct: 63 MLKTLERYQ 71
>sp|Q90718|SRF_CHICK Serum response factor (Fragment) OS=Gallus gallus GN=SRF PE=2
SV=1
Length = 375
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 3 GKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYI 62
GKKT+ R KI+M+ I+N+ R TFSKR++GI KKA E TLT + + ++V S++G Y
Sbjct: 4 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 63
Query: 63 F 63
F
Sbjct: 64 F 64
>sp|Q38837|AGL13_ARATH Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana
GN=AGL13 PE=2 SV=2
Length = 244
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K+E+K+IEN+ R +TFSKR+SG+ KKA E L + +++++FS GK Y F N
Sbjct: 3 RGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEF-SNVG 61
Query: 69 IHPLVKAYRHARINELNQQHNDLL 92
+ ++ Y + N L+ ND L
Sbjct: 62 VGRTIERYYRCKDNLLD---NDTL 82
>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1
Length = 242
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R KIE+K+IEN +R +TF KRR+G+ KKA E L + +A++VFS G+ Y + N++
Sbjct: 19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNS 77
Query: 69 IHPLVKAYRHARINELN 85
+ ++ Y+ A + N
Sbjct: 78 VKGTIERYKKACTDSPN 94
>sp|Q0J8G8|MAD26_ORYSJ MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica
GN=MADS26 PE=2 SV=1
Length = 222
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K+++++IEN R +TF KRR+G+ KKA E L + I I++FS GK Y
Sbjct: 3 RGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGT 62
Query: 69 IHPLVKAYRHARINELNQQHNDLLRQLDEEKEQEKMLKQ 107
+ L++ Y+ A +Q N Q + K++ +LKQ
Sbjct: 63 MEELIERYKSAS----GEQANACGDQRMDPKQEAMVLKQ 97
>sp|A2YQK9|MAD26_ORYSI MADS-box transcription factor 26 OS=Oryza sativa subsp. indica
GN=MADS26 PE=2 SV=2
Length = 222
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R K+++++IEN R +TF KRR+G+ KKA E L + I I++FS GK Y
Sbjct: 3 RGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGT 62
Query: 69 IHPLVKAYRHARINELNQQHNDLLRQLDEEKEQEKMLKQ 107
+ L++ Y+ A +Q N Q + K++ +LKQ
Sbjct: 63 MEELIERYKSAS----GEQANACGDQRMDPKQEAMVLKQ 97
>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana
GN=AGL6 PE=1 SV=2
Length = 252
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIF 63
R ++EMK+IEN+ +R +TFSKRR+G+ KKA E L + +A+++FS GK Y F
Sbjct: 3 RGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF 57
>sp|Q84NC2|MAD31_ORYSJ MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica
GN=MADS31 PE=2 SV=1
Length = 178
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPY 61
R ++E+KKIEN +R +TFSKRR G+ KKA+E L + I ++VFS +GK Y
Sbjct: 3 RGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMY 55
>sp|Q8GTF4|AP1C_BRAOB Floral homeotic protein APETALA 1 C OS=Brassica oleracea var.
botrytis GN=AP1C PE=2 SV=1
Length = 256
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 9 RQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68
R ++++K+IEN+ +R +TFSKRR+G++KKA E L + +A+VVFS GK + + +
Sbjct: 3 RGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSC 62
Query: 69 IHPLVKAY 76
+ +++ Y
Sbjct: 63 MEKILERY 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,900,947
Number of Sequences: 539616
Number of extensions: 1421445
Number of successful extensions: 8745
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 8540
Number of HSP's gapped (non-prelim): 220
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)