Query 040485
Match_columns 116
No_of_seqs 123 out of 1091
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:56:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.8E-30 3.8E-35 169.5 3.5 71 8-79 1-71 (77)
2 KOG0014 MADS box transcription 100.0 4.5E-30 9.8E-35 189.4 4.1 72 7-78 1-73 (195)
3 smart00432 MADS MADS domain. 100.0 2.6E-29 5.6E-34 156.7 4.2 59 8-66 1-59 (59)
4 cd00120 MADS MADS: MCM1, Agamo 99.9 1.5E-28 3.3E-33 153.3 3.2 59 8-66 1-59 (59)
5 cd00266 MADS_SRF_like SRF-like 99.9 2.7E-28 5.7E-33 161.2 3.9 71 8-78 1-71 (83)
6 PF00319 SRF-TF: SRF-type tran 99.9 4.4E-26 9.6E-31 138.4 0.5 51 15-65 1-51 (51)
7 KOG0015 Regulator of arginine 99.9 6.9E-23 1.5E-27 161.4 3.7 65 3-67 58-122 (338)
8 COG5068 ARG80 Regulator of arg 99.5 1.2E-14 2.5E-19 118.8 3.7 63 6-68 80-142 (412)
9 PF04977 DivIC: Septum formati 83.7 4 8.6E-05 25.3 5.0 32 81-112 19-50 (80)
10 PF09151 DUF1936: Domain of un 81.8 1.6 3.5E-05 24.0 2.2 28 40-67 2-31 (36)
11 PRK00295 hypothetical protein; 78.8 12 0.00026 23.5 5.9 39 75-113 15-53 (68)
12 PF01486 K-box: K-box region; 77.7 2.9 6.4E-05 27.7 3.0 37 80-116 6-42 (100)
13 PRK00736 hypothetical protein; 77.1 14 0.00029 23.2 5.8 39 75-113 15-53 (68)
14 PF10224 DUF2205: Predicted co 77.0 16 0.00034 24.0 6.2 32 81-112 25-56 (80)
15 PRK02119 hypothetical protein; 75.1 16 0.00034 23.3 5.7 39 75-113 19-57 (73)
16 PF02183 HALZ: Homeobox associ 75.0 14 0.0003 21.5 5.0 32 81-112 7-38 (45)
17 PRK04325 hypothetical protein; 75.0 16 0.00034 23.3 5.7 39 75-113 19-57 (74)
18 PRK04406 hypothetical protein; 74.3 17 0.00036 23.3 5.7 39 75-113 21-59 (75)
19 PRK00888 ftsB cell division pr 73.2 13 0.00028 25.2 5.3 33 81-113 29-61 (105)
20 PRK00846 hypothetical protein; 73.1 19 0.00042 23.4 5.8 39 75-113 23-61 (77)
21 PRK02793 phi X174 lysis protei 72.1 21 0.00045 22.6 5.7 39 75-113 18-56 (72)
22 PF04521 Viral_P18: ssRNA posi 70.9 11 0.00025 26.5 4.6 86 24-111 4-97 (120)
23 TIGR02209 ftsL_broad cell divi 70.8 21 0.00045 22.5 5.6 33 80-112 25-57 (85)
24 PF04102 SlyX: SlyX; InterPro 70.3 15 0.00032 23.0 4.7 39 75-113 14-52 (69)
25 PF07106 TBPIP: Tat binding pr 67.3 31 0.00066 24.8 6.5 59 49-110 45-103 (169)
26 PF06005 DUF904: Protein of un 61.2 38 0.00083 21.5 5.4 32 80-111 19-50 (72)
27 PF03670 UPF0184: Uncharacteri 59.1 32 0.00069 22.7 4.8 33 79-111 26-58 (83)
28 PF06156 DUF972: Protein of un 57.8 38 0.00082 23.2 5.2 33 80-112 23-55 (107)
29 PF13540 RCC1_2: Regulator of 56.7 10 0.00022 19.7 1.8 25 42-67 3-27 (30)
30 PF10224 DUF2205: Predicted co 55.5 46 0.001 21.7 5.1 48 65-112 2-49 (80)
31 PRK13169 DNA replication intia 55.4 43 0.00093 23.1 5.2 33 80-112 23-55 (110)
32 KOG3650 Predicted coiled-coil 54.8 32 0.00068 23.8 4.4 70 41-110 9-94 (120)
33 PHA03162 hypothetical protein; 54.6 27 0.00058 25.1 4.1 26 88-113 15-40 (135)
34 PF02996 Prefoldin: Prefoldin 52.8 65 0.0014 21.3 6.1 33 79-111 84-116 (120)
35 KOG3335 Predicted coiled-coil 52.3 28 0.0006 26.2 4.1 62 51-112 76-139 (181)
36 KOG2911 Uncharacterized conser 50.4 64 0.0014 27.5 6.4 17 49-65 202-219 (439)
37 PF06216 RTBV_P46: Rice tungro 50.0 54 0.0012 26.4 5.6 54 59-112 44-104 (389)
38 PF10584 Proteasome_A_N: Prote 49.9 2.7 5.9E-05 21.3 -1.1 12 50-61 4-15 (23)
39 PF04728 LPP: Lipoprotein leuc 49.5 59 0.0013 19.9 4.7 26 81-106 5-30 (56)
40 PF06156 DUF972: Protein of un 49.5 47 0.001 22.7 4.6 32 80-111 16-47 (107)
41 PF08172 CASP_C: CASP C termin 49.2 73 0.0016 24.9 6.2 31 81-111 102-132 (248)
42 PRK14127 cell division protein 48.2 58 0.0013 22.5 4.9 27 83-109 41-67 (109)
43 PRK10884 SH3 domain-containing 47.4 50 0.0011 25.1 4.9 27 84-110 137-163 (206)
44 PF07334 IFP_35_N: Interferon- 46.8 76 0.0016 20.6 5.0 27 82-108 3-29 (76)
45 PF11853 DUF3373: Protein of u 46.5 19 0.00041 31.0 2.7 21 87-107 32-52 (489)
46 PF00170 bZIP_1: bZIP transcri 45.8 66 0.0014 19.3 4.5 32 80-111 27-58 (64)
47 PF08432 Vfa1: AAA-ATPase Vps4 44.9 59 0.0013 24.0 4.9 13 45-57 11-23 (182)
48 PRK03947 prefoldin subunit alp 44.8 1E+02 0.0022 21.3 5.9 30 81-110 103-132 (140)
49 PF12548 DUF3740: Sulfatase pr 42.2 80 0.0017 22.8 5.1 31 81-111 101-131 (145)
50 COG0139 HisI Phosphoribosyl-AM 41.6 11 0.00024 26.2 0.5 27 33-59 69-95 (111)
51 PF04678 DUF607: Protein of un 40.9 1.2E+02 0.0027 22.1 6.1 35 76-110 54-88 (180)
52 PF14782 BBS2_C: Ciliary BBSom 40.2 82 0.0018 26.6 5.6 54 50-103 29-85 (431)
53 PF01166 TSC22: TSC-22/dip/bun 39.8 92 0.002 19.3 4.6 27 81-107 16-42 (59)
54 PRK13169 DNA replication intia 39.7 83 0.0018 21.7 4.6 32 80-111 16-47 (110)
55 PF04568 IATP: Mitochondrial A 39.7 79 0.0017 21.5 4.5 24 86-109 72-99 (100)
56 TIGR00293 prefoldin, archaeal 39.6 1.2E+02 0.0025 20.5 6.3 31 80-110 87-117 (126)
57 TIGR02894 DNA_bind_RsfA transc 39.4 88 0.0019 23.1 5.0 26 84-109 109-134 (161)
58 PF08432 Vfa1: AAA-ATPase Vps4 39.3 1.1E+02 0.0023 22.6 5.5 27 40-66 14-40 (182)
59 COG1729 Uncharacterized protei 38.7 71 0.0015 25.3 4.7 20 80-99 57-76 (262)
60 PF01763 Herpes_UL6: Herpesvir 38.5 93 0.002 27.3 5.7 41 74-114 358-398 (557)
61 COG4467 Regulator of replicati 38.4 84 0.0018 21.9 4.5 32 80-111 23-54 (114)
62 PF06305 DUF1049: Protein of u 38.1 45 0.00097 20.0 2.9 23 83-105 45-67 (68)
63 PF05377 FlaC_arch: Flagella a 37.8 96 0.0021 18.9 4.9 20 85-104 20-39 (55)
64 TIGR02338 gimC_beta prefoldin, 37.8 86 0.0019 21.0 4.5 32 80-111 75-106 (110)
65 COG3883 Uncharacterized protei 37.3 69 0.0015 25.5 4.4 31 81-111 54-84 (265)
66 PF12709 Kinetocho_Slk19: Cent 37.1 89 0.0019 20.8 4.3 29 82-110 45-73 (87)
67 PRK00888 ftsB cell division pr 36.8 61 0.0013 21.9 3.6 29 83-111 45-73 (105)
68 KOG0432 Valyl-tRNA synthetase 36.4 47 0.001 30.9 3.7 17 37-53 881-897 (995)
69 PF15188 CCDC-167: Coiled-coil 36.3 78 0.0017 20.9 3.9 32 81-112 38-69 (85)
70 PF07412 Geminin: Geminin; In 36.3 56 0.0012 25.0 3.6 31 82-112 128-158 (200)
71 PRK10884 SH3 domain-containing 36.1 95 0.0021 23.5 4.9 18 93-110 132-149 (206)
72 PF10491 Nrf1_DNA-bind: NLS-bi 36.0 78 0.0017 24.5 4.4 55 32-87 35-96 (214)
73 PF05529 Bap31: B-cell recepto 36.0 1.1E+02 0.0023 22.4 5.1 30 84-113 159-188 (192)
74 smart00338 BRLZ basic region l 35.7 1E+02 0.0022 18.5 4.4 29 81-109 28-56 (65)
75 PHA01750 hypothetical protein 35.4 1.2E+02 0.0026 19.4 5.4 34 78-111 34-67 (75)
76 COG2075 RPL24A Ribosomal prote 35.3 56 0.0012 20.7 3.0 49 42-91 6-58 (66)
77 PF09941 DUF2173: Uncharacteri 35.2 38 0.00083 23.4 2.4 28 38-66 3-30 (108)
78 PRK10803 tol-pal system protei 35.0 1E+02 0.0022 24.0 5.0 26 83-108 58-83 (263)
79 PF03980 Nnf1: Nnf1 ; InterPr 34.9 1.4E+02 0.0029 19.8 6.6 33 81-113 75-107 (109)
80 PF14193 DUF4315: Domain of un 34.8 1.3E+02 0.0029 19.6 5.1 31 82-112 4-34 (83)
81 COG4888 Uncharacterized Zn rib 34.3 88 0.0019 21.5 4.0 61 7-72 1-67 (104)
82 TIGR01916 F420_cofE F420-0:gam 34.2 39 0.00085 26.5 2.6 30 39-68 133-162 (243)
83 PF14775 NYD-SP28_assoc: Sperm 34.1 1.1E+02 0.0024 18.6 4.2 25 87-111 34-58 (60)
84 cd00632 Prefoldin_beta Prefold 33.9 1.4E+02 0.003 19.7 5.4 33 80-112 71-103 (105)
85 PF04210 MtrG: Tetrahydrometha 33.8 1E+02 0.0022 19.7 4.0 29 86-114 12-40 (70)
86 PF01502 PRA-CH: Phosphoribosy 33.3 13 0.00029 24.0 -0.1 36 24-59 19-63 (75)
87 PF11236 DUF3037: Protein of u 33.2 1.3E+02 0.0027 20.6 4.8 52 47-98 16-67 (118)
88 cd00890 Prefoldin Prefoldin is 32.8 1.5E+02 0.0032 19.7 7.7 33 79-111 94-126 (129)
89 PRK10803 tol-pal system protei 32.7 97 0.0021 24.1 4.6 32 80-111 62-93 (263)
90 PF01920 Prefoldin_2: Prefoldi 32.2 1.4E+02 0.003 19.1 7.2 67 39-112 36-102 (106)
91 PF11559 ADIP: Afadin- and alp 32.0 1.8E+02 0.0039 20.3 6.2 26 83-108 63-88 (151)
92 PF07676 PD40: WD40-like Beta 30.7 69 0.0015 16.8 2.6 21 47-67 9-29 (39)
93 TIGR01149 mtrG N5-methyltetrah 30.3 1.3E+02 0.0028 19.3 4.0 29 86-114 12-40 (70)
94 TIGR02338 gimC_beta prefoldin, 30.1 1.7E+02 0.0037 19.5 5.4 41 74-114 62-102 (110)
95 PRK15422 septal ring assembly 30.0 1.6E+02 0.0034 19.3 4.5 21 80-100 19-39 (79)
96 cd04766 HTH_HspR Helix-Turn-He 29.5 1.1E+02 0.0024 19.5 3.9 24 87-110 66-89 (91)
97 PF07888 CALCOCO1: Calcium bin 29.4 2.6E+02 0.0056 24.6 6.9 31 37-68 78-115 (546)
98 KOG4196 bZIP transcription fac 29.3 1.8E+02 0.0038 20.9 5.0 29 82-110 77-105 (135)
99 PRK09343 prefoldin subunit bet 29.2 1.6E+02 0.0034 20.2 4.7 31 81-111 80-110 (121)
100 PRK14127 cell division protein 28.9 1.7E+02 0.0036 20.2 4.7 34 81-114 32-65 (109)
101 COG4839 FtsL Protein required 28.1 1.9E+02 0.004 20.4 4.9 33 80-112 61-93 (120)
102 KOG4797 Transcriptional regula 28.0 1.5E+02 0.0032 20.8 4.3 26 85-110 66-91 (123)
103 COG4026 Uncharacterized protei 27.8 1.2E+02 0.0026 24.0 4.3 30 83-112 132-161 (290)
104 COG5509 Uncharacterized small 27.6 1.5E+02 0.0033 18.6 3.9 27 79-105 25-51 (65)
105 PRK13293 F420-0--gamma-glutamy 27.4 56 0.0012 25.7 2.4 30 39-68 134-163 (245)
106 TIGR02894 DNA_bind_RsfA transc 27.3 1.9E+02 0.0042 21.3 5.1 31 81-111 99-129 (161)
107 TIGR01242 26Sp45 26S proteasom 27.2 1.9E+02 0.0041 23.1 5.5 35 80-114 7-41 (364)
108 PRK13922 rod shape-determining 27.2 1.8E+02 0.0038 22.4 5.2 20 84-103 74-93 (276)
109 PF07716 bZIP_2: Basic region 27.0 1.4E+02 0.003 17.4 5.0 26 86-111 25-50 (54)
110 COG3883 Uncharacterized protei 27.0 1.8E+02 0.0038 23.2 5.2 25 86-110 73-97 (265)
111 COG2919 Septum formation initi 26.4 2.1E+02 0.0047 19.4 5.3 30 83-112 54-83 (117)
112 PF10226 DUF2216: Uncharacteri 26.4 1.9E+02 0.0042 22.0 5.1 31 81-111 43-73 (195)
113 PF10883 DUF2681: Protein of u 26.3 1.9E+02 0.0042 19.1 4.5 18 90-107 27-44 (87)
114 PRK01026 tetrahydromethanopter 26.2 1.6E+02 0.0035 19.2 4.0 29 86-114 15-43 (77)
115 PF11853 DUF3373: Protein of u 26.2 50 0.0011 28.5 2.1 28 80-107 32-59 (489)
116 COG4026 Uncharacterized protei 26.1 1.6E+02 0.0034 23.4 4.6 13 44-56 55-67 (290)
117 PF07544 Med9: RNA polymerase 25.9 1.9E+02 0.004 18.6 4.5 29 80-108 53-81 (83)
118 PF14197 Cep57_CLD_2: Centroso 25.6 1.8E+02 0.0038 18.2 4.1 23 83-105 44-66 (69)
119 COG4917 EutP Ethanolamine util 25.3 50 0.0011 24.0 1.7 23 41-63 59-81 (148)
120 PF11285 DUF3086: Protein of u 25.3 1.8E+02 0.0038 23.4 4.8 33 80-112 5-37 (283)
121 PF09006 Surfac_D-trimer: Lung 25.0 1.6E+02 0.0034 17.4 4.1 20 83-102 3-22 (46)
122 COG1382 GimC Prefoldin, chaper 24.9 2.5E+02 0.0054 19.7 5.4 33 80-112 78-110 (119)
123 PF04340 DUF484: Protein of un 24.6 2.3E+02 0.005 21.1 5.3 34 80-113 41-74 (225)
124 KOG4005 Transcription factor X 24.5 2E+02 0.0044 22.9 5.0 32 79-110 90-121 (292)
125 PF13252 DUF4043: Protein of u 24.4 35 0.00076 27.9 0.8 28 37-64 270-299 (341)
126 COG2900 SlyX Uncharacterized p 23.9 2.1E+02 0.0045 18.4 5.6 39 76-114 19-57 (72)
127 TIGR01834 PHA_synth_III_E poly 23.9 1.8E+02 0.0038 23.8 4.7 30 86-115 289-318 (320)
128 PF10835 DUF2573: Protein of u 23.8 97 0.0021 20.4 2.6 35 80-114 47-81 (82)
129 PRK14011 prefoldin subunit alp 23.6 2.8E+02 0.0061 19.8 6.0 27 80-106 96-122 (144)
130 PF11336 DUF3138: Protein of u 23.5 1.3E+02 0.0028 26.0 4.0 25 86-110 25-49 (514)
131 PF13815 Dzip-like_N: Iguana/D 23.3 2.5E+02 0.0053 19.0 4.9 27 83-109 84-110 (118)
132 KOG0183 20S proteasome, regula 22.9 50 0.0011 25.8 1.4 17 46-62 3-19 (249)
133 PF05529 Bap31: B-cell recepto 22.7 2E+02 0.0044 20.9 4.6 17 90-106 158-174 (192)
134 PF07047 OPA3: Optic atrophy 3 22.6 2.8E+02 0.006 19.4 5.8 25 88-112 107-131 (134)
135 PF03850 Tfb4: Transcription f 22.4 3.2E+02 0.007 21.6 5.9 27 41-67 39-65 (276)
136 TIGR03752 conj_TIGR03752 integ 22.2 1.9E+02 0.0042 24.9 4.9 28 80-107 67-94 (472)
137 PF04111 APG6: Autophagy prote 22.1 1.8E+02 0.0039 23.3 4.5 31 81-111 52-82 (314)
138 KOG4311 Histidinol dehydrogena 22.1 1.3E+02 0.0029 24.4 3.7 39 21-59 180-227 (359)
139 cd01900 YchF YchF subfamily. 22.1 3.9E+02 0.0085 20.9 7.0 17 41-57 87-103 (274)
140 PF14263 DUF4354: Domain of un 22.0 33 0.00071 24.3 0.2 42 17-63 41-82 (124)
141 PRK10722 hypothetical protein; 21.9 2.9E+02 0.0064 21.8 5.5 33 80-112 177-209 (247)
142 PRK13729 conjugal transfer pil 21.8 1.6E+02 0.0035 25.4 4.3 14 81-94 78-91 (475)
143 PF01996 F420_ligase: F420-0:G 21.8 33 0.00072 26.3 0.2 29 39-67 141-169 (228)
144 cd00584 Prefoldin_alpha Prefol 21.6 2.6E+02 0.0057 18.8 6.0 33 79-111 94-126 (129)
145 PF10482 CtIP_N: Tumour-suppre 21.6 1.4E+02 0.003 21.1 3.2 24 86-109 96-119 (120)
146 PRK09555 feoA ferrous iron tra 21.5 1.4E+02 0.003 18.8 3.0 33 32-64 20-52 (74)
147 PHA00327 minor capsid protein 21.3 2.7E+02 0.0059 20.9 4.9 28 81-108 110-137 (187)
148 PRK14891 50S ribosomal protein 21.2 69 0.0015 22.9 1.7 48 40-88 5-56 (131)
149 PF12958 DUF3847: Protein of u 21.1 2.6E+02 0.0056 18.4 5.1 28 82-109 4-31 (86)
150 PF04999 FtsL: Cell division p 20.9 2.4E+02 0.0052 18.1 5.4 29 82-110 38-66 (97)
151 PF04945 YHS: YHS domain; Int 20.8 57 0.0012 18.4 1.0 26 44-69 5-33 (47)
152 PRK09343 prefoldin subunit bet 20.8 2.9E+02 0.0063 18.9 5.2 33 81-113 73-105 (121)
153 PHA02047 phage lambda Rz1-like 20.8 2.8E+02 0.0061 18.9 4.5 25 83-107 38-62 (101)
154 cd01372 KISc_KIF4 Kinesin moto 20.7 81 0.0018 25.0 2.2 26 42-67 68-95 (341)
155 PF02996 Prefoldin: Prefoldin 20.7 2.6E+02 0.0056 18.3 5.1 35 78-112 76-110 (120)
156 PRK09039 hypothetical protein; 20.6 2.6E+02 0.0057 22.6 5.2 28 81-108 139-166 (343)
157 PRK09601 GTP-binding protein Y 20.5 4.4E+02 0.0095 21.8 6.5 25 32-56 74-106 (364)
158 PRK09039 hypothetical protein; 20.1 2.4E+02 0.0051 22.9 4.8 33 81-113 132-164 (343)
No 1
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=1.8e-30 Score=169.54 Aligned_cols=71 Identities=42% Similarity=0.716 Sum_probs=67.4
Q ss_pred CccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCCCChhhHHhhhhh
Q 040485 8 RRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDNIHPLVKAYRHA 79 (116)
Q Consensus 8 gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~~~~~~~~~~~~ 79 (116)
||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|++|.|++|+. ..++++|...
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~-~~vl~ry~~~ 71 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSM-EKIIERYQKT 71 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCH-HHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999999986 7777888754
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=99.96 E-value=4.5e-30 Score=189.35 Aligned_cols=72 Identities=49% Similarity=0.763 Sum_probs=66.7
Q ss_pred CCccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCCC-ChhhHHhhhh
Q 040485 7 KRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN-IHPLVKAYRH 78 (116)
Q Consensus 7 ~gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~-~~~~~~~~~~ 78 (116)
|||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|.||+|+. ...++++|..
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~ 73 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLN 73 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999975 5556677743
No 3
>smart00432 MADS MADS domain.
Probab=99.95 E-value=2.6e-29 Score=156.75 Aligned_cols=59 Identities=49% Similarity=0.825 Sum_probs=58.1
Q ss_pred CccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecC
Q 040485 8 RRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHN 66 (116)
Q Consensus 8 gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~ 66 (116)
||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||+|+|+++.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999987
No 4
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=1.5e-28 Score=153.27 Aligned_cols=59 Identities=53% Similarity=0.833 Sum_probs=57.8
Q ss_pred CccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecC
Q 040485 8 RRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHN 66 (116)
Q Consensus 8 gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~ 66 (116)
||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999886
No 5
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=2.7e-28 Score=161.24 Aligned_cols=71 Identities=42% Similarity=0.772 Sum_probs=65.1
Q ss_pred CccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCCCChhhHHhhhh
Q 040485 8 RRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDNIHPLVKAYRH 78 (116)
Q Consensus 8 gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~~~~~~~~~~~ 78 (116)
||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||+|||+|+|+.+.|++++....++++|..
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~ 71 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEV 71 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999888765556666643
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.91 E-value=4.4e-26 Score=138.38 Aligned_cols=51 Identities=51% Similarity=0.820 Sum_probs=46.8
Q ss_pred EEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeec
Q 040485 15 KKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLH 65 (116)
Q Consensus 15 ~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s 65 (116)
++|+|+..|++||+||+.||||||+|||+||||+||+|||+|+|++|+|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 479999999999999999999999999999999999999999999999986
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.87 E-value=6.9e-23 Score=161.35 Aligned_cols=65 Identities=48% Similarity=0.681 Sum_probs=63.4
Q ss_pred CCCCCCccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCC
Q 040485 3 GKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHND 67 (116)
Q Consensus 3 ~~~~~gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s 67 (116)
+|++.||+||+|+||+|+.+|++||||||.||||||+||++|+|.+|.|+|.|++|..|+|+.|-
T Consensus 58 ~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpK 122 (338)
T KOG0015|consen 58 GKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPK 122 (338)
T ss_pred CccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccc
Confidence 68899999999999999999999999999999999999999999999999999999999999983
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.50 E-value=1.2e-14 Score=118.77 Aligned_cols=63 Identities=35% Similarity=0.477 Sum_probs=61.0
Q ss_pred CCCccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCCC
Q 040485 6 TKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68 (116)
Q Consensus 6 ~~gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~ 68 (116)
+||++||.|.+|+|+.+|.|||+||+.||+|||.||++|+|.+|.++|.+++|..+.|+.|+-
T Consensus 80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~ 142 (412)
T COG5068 80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKL 142 (412)
T ss_pred ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcc
Confidence 689999999999999999999999999999999999999999999999999999999999953
No 9
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=83.72 E-value=4 Score=25.29 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
...+++++..|+.+++.++.++++|+.+.+..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777888888888888888887777665
No 10
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=81.85 E-value=1.6 Score=23.96 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=19.5
Q ss_pred hhhhhcccceEEEeeeCCC--CceeeecCC
Q 040485 40 EFVTLTSSAIAIVVFSQSG--KPYIFLHND 67 (116)
Q Consensus 40 ELs~Lc~~~v~~vv~s~~g--~~~~~~s~s 67 (116)
.||.-||+-|.+.||+..| +.|..+.|.
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-TT
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCCc
Confidence 4788899999999999999 456655554
No 11
>PRK00295 hypothetical protein; Provisional
Probab=78.75 E-value=12 Score=23.50 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=32.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 75 AYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 75 ~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.|....+..|+..+...+.+|+.++.+...|...++..+
T Consensus 15 a~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466778899999999999999999999999888777654
No 12
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.73 E-value=2.9 Score=27.74 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKETQP 116 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~~~~ 116 (116)
....|...+..++.++..++.+++.|+...|...|++
T Consensus 6 ~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ged 42 (100)
T PF01486_consen 6 GTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGED 42 (100)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4557788888999999999999999999999888764
No 13
>PRK00736 hypothetical protein; Provisional
Probab=77.05 E-value=14 Score=23.24 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=33.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 75 AYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 75 ~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.|....+..|+..+..-+.+|+.+++++..|.+.++..+
T Consensus 15 afqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 15 AEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778999999999999999999999999988887764
No 14
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=76.99 E-value=16 Score=23.95 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
+..|+..+..|-+.++..+.++++|..+++-.
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~L 56 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYL 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677777777777777766543
No 15
>PRK02119 hypothetical protein; Provisional
Probab=75.09 E-value=16 Score=23.30 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=33.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 75 AYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 75 ~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.|....+..|+..+..-+.+|+.++.++..|.+.++..+
T Consensus 19 a~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 19 AFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456778999999999999999999999999988887764
No 16
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.01 E-value=14 Score=21.50 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
...|...|+.|..+.+.++.+++.|..+....
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777665543
No 17
>PRK04325 hypothetical protein; Provisional
Probab=75.00 E-value=16 Score=23.34 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=33.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 75 AYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 75 ~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.|+...+..|+..+..-+.+|+.++.++..|.+.++..+
T Consensus 19 AfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 19 AFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466778999999999999999999999999988887764
No 18
>PRK04406 hypothetical protein; Provisional
Probab=74.31 E-value=17 Score=23.34 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=33.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 75 AYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 75 ~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.|+...+..|+..+...+.+|+.++.++..|.+.++..+
T Consensus 21 AfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 21 AFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466778999999999999999999999999988887664
No 19
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=73.18 E-value=13 Score=25.22 Aligned_cols=33 Identities=12% Similarity=-0.066 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
...+.+++..++++++.++.+|..|..+....+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666777777777777777777777666543
No 20
>PRK00846 hypothetical protein; Provisional
Probab=73.06 E-value=19 Score=23.35 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=33.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 75 AYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 75 ~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.|+...+..|++.+...+.+++.++.+..-|.+.+++.+
T Consensus 23 AfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 23 SFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678899999999999999999999998888888765
No 21
>PRK02793 phi X174 lysis protein; Provisional
Probab=72.06 E-value=21 Score=22.63 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=33.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 75 AYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 75 ~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.|+...+..|+..+...+.+|+.++.+...|.+.++..+
T Consensus 18 afQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 18 AFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466778999999999999999999999999988887754
No 22
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=70.95 E-value=11 Score=26.52 Aligned_cols=86 Identities=20% Similarity=0.199 Sum_probs=47.7
Q ss_pred cccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCCCChh-hHHhh-----h--hhhhHHHHHHHHHHHHHH
Q 040485 24 LITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDNIHP-LVKAY-----R--HARINELNQQHNDLLRQL 95 (116)
Q Consensus 24 ~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~~~~-~~~~~-----~--~~~~~~l~~~~~~L~~ql 95 (116)
-.+|+|.|.-++++-..-.+-|...- ++--++|=|-.|.-+++... .++.| . -....+.+.++..++.+|
T Consensus 4 ~~~~rk~R~~~y~~lgl~~vkC~Ln~--~~G~~CGMpaa~~l~~~~~~l~~dgfCGeKH~~~~~Sla~r~~~l~~~~~~L 81 (120)
T PF04521_consen 4 FRCVRKYRASVYKKLGLSAVKCRLNS--FCGVSCGMPAAFELEDGHPELPIDGFCGEKHKGLYESLAWRHAQLSDLNLEL 81 (120)
T ss_pred hHHHHHHHHHHHHHcCCeeeeecCCC--CCCcCCCCcceeecCCCCCcccccccccHhHHHHHHHHHHhhhhhhhHHHHH
Confidence 35789999999999888766664321 11113454555553333332 22322 1 112233345667777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 040485 96 DEEKEQEKMLKQMRRV 111 (116)
Q Consensus 96 ~~~k~~~~kL~~~~r~ 111 (116)
+.++.+.+.|...+..
T Consensus 82 ~~Le~r~e~Lk~~~~~ 97 (120)
T PF04521_consen 82 EKLERREEQLKTQIQV 97 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777766665443
No 23
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=70.80 E-value=21 Score=22.48 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
....+..++..++.+++.++.+++.|+.+....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888887776653
No 24
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.29 E-value=15 Score=22.98 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=28.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 75 AYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 75 ~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.|....+..|+..+...+.+|+.++..+..|...++..+
T Consensus 14 a~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 14 AFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678889999888999999999999888888877654
No 25
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.26 E-value=31 Score=24.79 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=26.5
Q ss_pred eEEEeeeCCCCceeeecCCCChhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 49 IAIVVFSQSGKPYIFLHNDNIHPLVKAYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 49 v~~vv~s~~g~~~~~~s~s~~~~~~~~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
-..|++-..|+.-.|+-.....+.. .......+..++..|++++..++.....|..++.
T Consensus 45 ~g~i~~K~~GKqkiY~~~Q~~~~~~---s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 45 EGKIVEKEYGKQKIYFANQDELEVP---SPEELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred CCCeeeeeecceEEEeeCccccCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666778766665543221110 0112333344444444444444444444444443
No 26
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=61.18 E-value=38 Score=21.52 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
++..|..++..|+++...+...+..|.+++.+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666666666666655555555555555443
No 27
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=59.06 E-value=32 Score=22.74 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
..+..++..++.|+..|+.++.+++.|...+++
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~ 58 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQE 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345667777777777777777777777666554
No 28
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.78 E-value=38 Score=23.15 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
.+..|..++..|.++...++-+|..|++.+.+.
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666667777777777776654
No 29
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=56.67 E-value=10 Score=19.72 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=17.0
Q ss_pred hhhcccceEEEeeeCCCCceeeecCC
Q 040485 42 VTLTSSAIAIVVFSQSGKPYIFLHND 67 (116)
Q Consensus 42 s~Lc~~~v~~vv~s~~g~~~~~~s~s 67 (116)
+|-||....+++.+ +|..|.|++.+
T Consensus 3 ~ia~G~~ht~al~~-~g~v~~wG~n~ 27 (30)
T PF13540_consen 3 QIACGGYHTCALTS-DGEVYCWGDNN 27 (30)
T ss_dssp EEEEESSEEEEEE--TTEEEEEE--T
T ss_pred EEEecCCEEEEEEc-CCCEEEEcCCc
Confidence 45688888777775 49999999764
No 30
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=55.47 E-value=46 Score=21.71 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=30.3
Q ss_pred cCCCChhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 65 HNDNIHPLVKAYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 65 s~s~~~~~~~~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
||......++.+.......|.+++..||+.|+.+-.+.+..++++...
T Consensus 2 sp~~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL 49 (80)
T PF10224_consen 2 SPRRNSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKL 49 (80)
T ss_pred CCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555556666777777777777777777777766554
No 31
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=55.37 E-value=43 Score=23.12 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
.+..|.+++..|.++...++-+|+.|++.+.+.
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777777777777888888888877763
No 32
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.83 E-value=32 Score=23.77 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=39.6
Q ss_pred hhhhcccceEEEeeeCC----CCceeeecCCCChhhH---Hhh-----hh----hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 41 FVTLTSSAIAIVVFSQS----GKPYIFLHNDNIHPLV---KAY-----RH----ARINELNQQHNDLLRQLDEEKEQEKM 104 (116)
Q Consensus 41 Ls~Lc~~~v~~vv~s~~----g~~~~~~s~s~~~~~~---~~~-----~~----~~~~~l~~~~~~L~~ql~~~k~~~~k 104 (116)
-..|++.+.++.|-..+ |+..--..|..++..+ +.. .. ...-+|++-++.|.+.++..++++-+
T Consensus 9 dipl~d~d~~v~I~~sgr~~~grtprs~~P~~~~~~l~a~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLK 88 (120)
T KOG3650|consen 9 DIPLTDIDLAVDIDHSGRILYGRTPRSLLPKMMNADLDAVEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLK 88 (120)
T ss_pred cCcccCCCccccccccccccCCCCccccCcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45677888887774332 4433333443332221 111 11 12445666778888888888888888
Q ss_pred HHHHHH
Q 040485 105 LKQMRR 110 (116)
Q Consensus 105 L~~~~r 110 (116)
|+-++.
T Consensus 89 LrSENQ 94 (120)
T KOG3650|consen 89 LRSENQ 94 (120)
T ss_pred hhhhhH
Confidence 776654
No 33
>PHA03162 hypothetical protein; Provisional
Probab=54.63 E-value=27 Score=25.08 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 88 HNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 88 ~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.++|..+|.+++-+|+.|...+++..
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~ 40 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGT 40 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56788888888888898888887663
No 34
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=52.85 E-value=65 Score=21.33 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.++..+..++..+.+++..++.+...+...+.+
T Consensus 84 ~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 84 KRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544443
No 35
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=52.31 E-value=28 Score=26.21 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=35.7
Q ss_pred EEeeeCCCCcee--eecCCCChhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 51 IVVFSQSGKPYI--FLHNDNIHPLVKAYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 51 ~vv~s~~g~~~~--~~s~s~~~~~~~~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
+++|+=+|..+. |.-.......-+.-+..-..+|..+++.|.++++.+++....|...+...
T Consensus 76 ~~iF~vggg~lv~Ey~R~~~~e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 76 LFIFSVGGGVLVFEYWRQARKERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred HHheeecceeeeehhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 456666554333 32222222222223334466777788888888888888888886555444
No 36
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.37 E-value=64 Score=27.47 Aligned_cols=17 Identities=29% Similarity=0.217 Sum_probs=8.3
Q ss_pred eEEEeeeCCC-Cceeeec
Q 040485 49 IAIVVFSQSG-KPYIFLH 65 (116)
Q Consensus 49 v~~vv~s~~g-~~~~~~s 65 (116)
+.++|+-..| +...|..
T Consensus 202 k~i~vg~~~g~k~~~f~~ 219 (439)
T KOG2911|consen 202 KHIIVGESIGIKFLKFSQ 219 (439)
T ss_pred hheeeehhcceEEEeecc
Confidence 3455544444 5555544
No 37
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=50.03 E-value=54 Score=26.44 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=34.1
Q ss_pred CceeeecCCCChh----hHHh--hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 59 KPYIFLHNDNIHP----LVKA--YR-HARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 59 ~~~~~~s~s~~~~----~~~~--~~-~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
.+|+|+|...... ++.. |. ....+....+...|.+|+..+++.+..+++.++++
T Consensus 44 hlftfss~ntervrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~ 104 (389)
T PF06216_consen 44 HLFTFSSNNTERVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREM 104 (389)
T ss_pred hheeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777866543211 1222 21 22345556777888888888888888888877765
No 38
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=49.90 E-value=2.7 Score=21.32 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=8.7
Q ss_pred EEEeeeCCCCce
Q 040485 50 AIVVFSQSGKPY 61 (116)
Q Consensus 50 ~~vv~s~~g~~~ 61 (116)
.+.+|||+|+.|
T Consensus 4 ~~t~FSp~Grl~ 15 (23)
T PF10584_consen 4 SITTFSPDGRLF 15 (23)
T ss_dssp STTSBBTTSSBH
T ss_pred CceeECCCCeEE
Confidence 455788988765
No 39
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=49.55 E-value=59 Score=19.89 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLK 106 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~ 106 (116)
+..|..++..|+.+++.+..+...|+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 40
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.46 E-value=47 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+..+..++..|+.++..+-++|..|+-++..
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~ 47 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEH 47 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666667666666544
No 41
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=49.24 E-value=73 Score=24.88 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.....+++..|+.++++++.+|-+|=+..|=
T Consensus 102 lr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 102 LRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566788888888888888888777663
No 42
>PRK14127 cell division protein GpsB; Provisional
Probab=48.23 E-value=58 Score=22.45 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
.+..+...|++++..++.++..++...
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444433
No 43
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.35 E-value=50 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 84 LNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 84 l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
|..+...|++++..++.+++.|+.++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 44
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=46.80 E-value=76 Score=20.60 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
.++..+-..|+.+|.+++.++..+...
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555566666666666555555444
No 45
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=46.47 E-value=19 Score=31.01 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040485 87 QHNDLLRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 87 ~~~~L~~ql~~~k~~~~kL~~ 107 (116)
++++|+.||++++++.++|.+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 444455555544444444433
No 46
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=45.81 E-value=66 Score=19.33 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+..|...+..|..+.+.+..++..|...+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666555555555443
No 47
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=44.95 E-value=59 Score=23.95 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=7.8
Q ss_pred cccceEEEeeeCC
Q 040485 45 TSSAIAIVVFSQS 57 (116)
Q Consensus 45 c~~~v~~vv~s~~ 57 (116)
.++..|+|||-|+
T Consensus 11 ~~~k~C~IC~Kps 23 (182)
T PF08432_consen 11 TDAKACFICYKPS 23 (182)
T ss_pred CCCCceeEecCCC
Confidence 5566666666543
No 48
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=44.83 E-value=1e+02 Score=21.26 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
+..+......+.+++..+.++.+.+...+.
T Consensus 103 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 103 KEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 49
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=42.20 E-value=80 Score=22.78 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+.|..+-..+-.+|+.|+.+++.|++.-++
T Consensus 101 ~~aWk~hr~~ID~eIe~Lq~Ki~~LKeiR~h 131 (145)
T PF12548_consen 101 PKAWKDHRLHIDHEIETLQDKIKNLKEIRGH 131 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888877654
No 50
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=41.63 E-value=11 Score=26.22 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=21.3
Q ss_pred chhhhhhhhhhhcccceEEEeeeCCCC
Q 040485 33 GIYKKASEFVTLTSSAIAIVVFSQSGK 59 (116)
Q Consensus 33 Gl~KKa~ELs~Lc~~~v~~vv~s~~g~ 59 (116)
|=+-++.|+.+-||.|+-++++.+.|.
T Consensus 69 G~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 69 GHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred CceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 344456789999999999999888553
No 51
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=40.92 E-value=1.2e+02 Score=22.13 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=22.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 76 YRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 76 ~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
+.......+..++..+.++++.+++...++.+...
T Consensus 54 ~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~ 88 (180)
T PF04678_consen 54 YQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAE 88 (180)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566667777777777777766666665544
No 52
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=40.17 E-value=82 Score=26.64 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=27.7
Q ss_pred EEEeeeCCCCceeeecCCCCh---hhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 040485 50 AIVVFSQSGKPYIFLHNDNIH---PLVKAYRHARINELNQQHNDLLRQLDEEKEQEK 103 (116)
Q Consensus 50 ~~vv~s~~g~~~~~~s~s~~~---~~~~~~~~~~~~~l~~~~~~L~~ql~~~k~~~~ 103 (116)
-+||+|-+|...-|..++... .....-....+.+|.++-..|..||...++...
T Consensus 29 ~lI~csvdGeVrGy~~~~~~~~~~~~~~~~~~~~lreL~qkKQ~Ll~EL~nyEe~~~ 85 (431)
T PF14782_consen 29 QLICCSVDGEVRGYLPDTQESKGTLVDASDEQEALRELSQKKQNLLLELRNYEENAK 85 (431)
T ss_pred eEEEEEcCCEEEEeccCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477888889877772222111 111222233455555555556655555544433
No 53
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=39.80 E-value=92 Score=19.29 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~ 107 (116)
...|..++.+|.+++..++.+|.-|+.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666665554
No 54
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.69 E-value=83 Score=21.70 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+..+..++..|++++..+-++|..|+-++..
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677777777777777777766543
No 55
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=39.68 E-value=79 Score=21.45 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHH
Q 040485 86 QQHNDLLRQLDE----EKEQEKMLKQMR 109 (116)
Q Consensus 86 ~~~~~L~~ql~~----~k~~~~kL~~~~ 109 (116)
.++..|+++++. .++++++|++.+
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666 666666666554
No 56
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=39.65 E-value=1.2e+02 Score=20.47 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
-..++......|..+++.+++....+.+...
T Consensus 87 A~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~ 117 (126)
T TIGR00293 87 AIEFLKKRIEELEKAIEKLQEALAELASRAQ 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554443
No 57
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.41 E-value=88 Score=23.14 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 84 LNQQHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 84 l~~~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
|..+...|+++++.++.++.+|....
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 58
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=39.28 E-value=1.1e+02 Score=22.57 Aligned_cols=27 Identities=7% Similarity=0.217 Sum_probs=18.9
Q ss_pred hhhhhcccceEEEeeeCCCCceeeecC
Q 040485 40 EFVTLTSSAIAIVVFSQSGKPYIFLHN 66 (116)
Q Consensus 40 ELs~Lc~~~v~~vv~s~~g~~~~~~s~ 66 (116)
--|..|-=.-..|++.++++-|.|.=|
T Consensus 14 k~C~IC~KpsttVL~t~~~~DfFY~C~ 40 (182)
T PF08432_consen 14 KACFICYKPSTTVLITPDNKDFFYVCP 40 (182)
T ss_pred CceeEecCCCceEEecCCCCCeEEeCc
Confidence 356777666677778888876666555
No 59
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.71 E-value=71 Score=25.33 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEK 99 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k 99 (116)
.+..+.+|+..|+.+++.+.
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~ 76 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELR 76 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHH
Confidence 34555555555555555555
No 60
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=38.45 E-value=93 Score=27.34 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=30.5
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 74 KAYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 74 ~~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
+...+.-.+-|..++..+-++|+.+++.|+.+...+++.+.
T Consensus 358 ~~v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~ 398 (557)
T PF01763_consen 358 DSVSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELES 398 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777788888888888888888888887777654
No 61
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=38.38 E-value=84 Score=21.89 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+..+.+++..|.++...+.-+|++|++.+-+
T Consensus 23 el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 23 ELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 35666777777777777777788888777654
No 62
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.11 E-value=45 Score=19.99 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKML 105 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL 105 (116)
.++.++..++.+++.+++++++|
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666666666665554
No 63
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.82 E-value=96 Score=18.91 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040485 85 NQQHNDLLRQLDEEKEQEKM 104 (116)
Q Consensus 85 ~~~~~~L~~ql~~~k~~~~k 104 (116)
..+...+.+.++.+++..++
T Consensus 20 k~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 20 KKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333
No 64
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.75 E-value=86 Score=20.98 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+.++...+..|..+++.++++..+++..+++
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555544
No 65
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.31 E-value=69 Score=25.50 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
+..|..+++.++.+++..++++++++.++++
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~ 84 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKK 84 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 66
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=37.06 E-value=89 Score=20.80 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
..|..++..|+.++..+..+++.|+..+.
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777766554
No 67
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.77 E-value=61 Score=21.89 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+.++...|..+++.++...+-+++..|+
T Consensus 45 ~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 45 KLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 34444444555555444433444444444
No 68
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.39 E-value=47 Score=30.94 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=11.4
Q ss_pred hhhhhhhhcccceEEEe
Q 040485 37 KASEFVTLTSSAIAIVV 53 (116)
Q Consensus 37 Ka~ELs~Lc~~~v~~vv 53 (116)
-+.++++||.+..--|+
T Consensus 881 ~~~~i~~l~~~~~v~i~ 897 (995)
T KOG0432|consen 881 FLDEISTLTNLELVSIS 897 (995)
T ss_pred HHHHHHHhhccceeEec
Confidence 45788999877654333
No 69
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.29 E-value=78 Score=20.94 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
-..+..+...+.+.+..-+++++.|+++++.+
T Consensus 38 R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK~ 69 (85)
T PF15188_consen 38 RRSLEKELNELKEKLENNEKELKLLRKENRKS 69 (85)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhhhh
Confidence 34556778889999999999999999988765
No 70
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=36.28 E-value=56 Score=24.98 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
..|+..++.++++|..++.++..|.+...+.
T Consensus 128 e~Lh~~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 128 EKLHKEIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888887776543
No 71
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.13 E-value=95 Score=23.53 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040485 93 RQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 93 ~ql~~~k~~~~kL~~~~r 110 (116)
+++..++.+|+.|.+++.
T Consensus 132 ~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 132 SVINGLKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 72
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=36.02 E-value=78 Score=24.45 Aligned_cols=55 Identities=13% Similarity=0.247 Sum_probs=36.5
Q ss_pred cchhhhh----hhhhhhcccceEEEeeeCCC---CceeeecCCCChhhHHhhhhhhhHHHHHH
Q 040485 32 SGIYKKA----SEFVTLTSSAIAIVVFSQSG---KPYIFLHNDNIHPLVKAYRHARINELNQQ 87 (116)
Q Consensus 32 ~Gl~KKa----~ELs~Lc~~~v~~vv~s~~g---~~~~~~s~s~~~~~~~~~~~~~~~~l~~~ 87 (116)
.-|+.|. .|+++-+|-++.|++++|+. ....||. .+-..++..|...-+..+.+.
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa-~pL~~vv~~~~~~I~~~le~~ 96 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGA-APLENVVRNLKPVIMEDLENA 96 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecc-hhHHHHHHHHHHHHHHHHHHH
Confidence 4466665 79999999999999999864 3445544 344555566666555555443
No 73
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.98 E-value=1.1e+02 Score=22.41 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 84 LNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 84 l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
...++++|++++++.+.+.+.|++..+..+
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666555443
No 74
>smart00338 BRLZ basic region leucin zipper.
Probab=35.65 E-value=1e+02 Score=18.51 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
+..|..++..|..+...+..++..|..++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 75
>PHA01750 hypothetical protein
Probab=35.43 E-value=1.2e+02 Score=19.37 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=22.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 78 HARINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 78 ~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+-..-.+++++.|..|+...+.+-++|++...+
T Consensus 34 dAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~e 67 (75)
T PHA01750 34 DAVKEIVNSELDNLKTEIEELKIKQDELSRQVEE 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444555667777777777777777777665543
No 76
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=35.35 E-value=56 Score=20.70 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=32.9
Q ss_pred hhhcccce----EEEeeeCCCCceeeecCCCChhhHHhhhhhhhHHHHHHHHHH
Q 040485 42 VTLTSSAI----AIVVFSQSGKPYIFLHNDNIHPLVKAYRHARINELNQQHNDL 91 (116)
Q Consensus 42 s~Lc~~~v----~~vv~s~~g~~~~~~s~s~~~~~~~~~~~~~~~~l~~~~~~L 91 (116)
|.-||.+| .++.+-.+|+.+-|+|+-... .+....++..-.|-..+.++
T Consensus 6 CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k-~~~~~rnPRk~~WT~~~~~~ 58 (66)
T COG2075 6 CSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEK-LFKLGRNPRKLKWTKKYRKM 58 (66)
T ss_pred ecCcCCccCCCceEEEEecCCeEEEEechhHHH-HHHccCCCccchhHHHHHHH
Confidence 45577766 567777889999999986555 55655666655666555443
No 77
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=35.19 E-value=38 Score=23.37 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=21.9
Q ss_pred hhhhhhhcccceEEEeeeCCCCceeeecC
Q 040485 38 ASEFVTLTSSAIAIVVFSQSGKPYIFLHN 66 (116)
Q Consensus 38 a~ELs~Lc~~~v~~vv~s~~g~~~~~~s~ 66 (116)
..+|..|.||- |+..||++|++..|-..
T Consensus 3 l~~Lm~lpGv~-AAg~Fs~~G~l~e~~G~ 30 (108)
T PF09941_consen 3 LDKLMKLPGVV-AAGEFSDDGKLVEYKGE 30 (108)
T ss_pred HHHhhcCCCeE-EEEEECCCCeEEeeecC
Confidence 45777888874 56789999999988773
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.99 E-value=1e+02 Score=24.02 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
+|.++++.|+.++..+.-.++.+...
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~ 83 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQ 83 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444444444444444444443333
No 79
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=34.92 E-value=1.4e+02 Score=19.81 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
......+.+.|...+..++..|..|.+.+....
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566777788888888888888877766543
No 80
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=34.81 E-value=1.3e+02 Score=19.65 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
..+..++.+....+...+.+++.|.....+.
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEA 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666555544
No 81
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=34.34 E-value=88 Score=21.50 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=36.2
Q ss_pred CCccccceEEeccCCC--ccccccccccchhhhhhhhhhhccc----ceEEEeeeCCCCceeeecCCCChhh
Q 040485 7 KRRQKIEMKKIENEDD--RLITFSKRRSGIYKKASEFVTLTSS----AIAIVVFSQSGKPYIFLHNDNIHPL 72 (116)
Q Consensus 7 ~gR~ki~i~~I~~~~~--R~~tf~KR~~Gl~KKa~ELs~Lc~~----~v~~vv~s~~g~~~~~~s~s~~~~~ 72 (116)
|||++.+.+.|..... ...||.==+.| +|.++.|-+ .+++++++..|.-|.+--|..+.++
T Consensus 1 MG~rr~krr~~ik~~~~~L~k~FtCp~Cg-----he~vs~ctvkk~~~~g~~~Cg~CGls~e~ev~~l~~~v 67 (104)
T COG4888 1 MGRRRRKRRKIIKRRPQVLPKTFTCPRCG-----HEKVSSCTVKKTVNIGTAVCGNCGLSFECEVPELSEPV 67 (104)
T ss_pred CCcccccccccCcccCccCCceEecCccC-----CeeeeEEEEEecCceeEEEcccCcceEEEeccccccch
Confidence 6777766665543211 12233222222 455555544 5678889999999998888776665
No 82
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=34.22 E-value=39 Score=26.48 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=25.7
Q ss_pred hhhhhhcccceEEEeeeCCCCceeeecCCC
Q 040485 39 SEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68 (116)
Q Consensus 39 ~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~ 68 (116)
.+|.-.+|++|+|||.++.|.+|--+.+..
T Consensus 133 ~~l~~~~g~~v~VIItDt~gr~~R~G~~gv 162 (243)
T TIGR01916 133 RGLRELTGVDVGVIITDTNGRPFREGQVGV 162 (243)
T ss_pred HHHHHHHCCCEEEEEECCCCCccccCCCCe
Confidence 356778999999999999999999988843
No 83
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=34.14 E-value=1.1e+02 Score=18.62 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 87 QHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 87 ~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
+-..|..+.+.++++|.+|+..+++
T Consensus 34 ~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 34 DRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446777778888888888887765
No 84
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.86 E-value=1.4e+02 Score=19.67 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
....+...+..+..+++.+.++..+++..+++.
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555543
No 85
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=33.75 E-value=1e+02 Score=19.71 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 86 QQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 86 ~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
.++.+++++|+..+++.+--..+.-|+.|
T Consensus 12 ~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~G 40 (70)
T PF04210_consen 12 DDFNEIMKRLDEIEEKVEFTNAEIAQRAG 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 46677788888888877777777666654
No 86
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=33.34 E-value=13 Score=24.01 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=25.9
Q ss_pred cccccccccchhhh---------hhhhhhhcccceEEEeeeCCCC
Q 040485 24 LITFSKRRSGIYKK---------ASEFVTLTSSAIAIVVFSQSGK 59 (116)
Q Consensus 24 ~~tf~KR~~Gl~KK---------a~ELs~Lc~~~v~~vv~s~~g~ 59 (116)
.+-||+-|.+|-.| +.|+.+-||.|+-++.+-|.|.
T Consensus 19 ~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 19 ATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp -EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred EEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 34457777677555 4679999999999999998886
No 87
>PF11236 DUF3037: Protein of unknown function (DUF3037); InterPro: IPR021398 This bacterial family of proteins has no known function.
Probab=33.24 E-value=1.3e+02 Score=20.55 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=28.3
Q ss_pred cceEEEeeeCCCCceeeecCCCChhhHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 040485 47 SAIAIVVFSQSGKPYIFLHNDNIHPLVKAYRHARINELNQQHNDLLRQLDEE 98 (116)
Q Consensus 47 ~~v~~vv~s~~g~~~~~~s~s~~~~~~~~~~~~~~~~l~~~~~~L~~ql~~~ 98 (116)
+.|+||+|+|.-+...|-.......+..-+.......+...++.+...++..
T Consensus 16 vNVGVvl~~~~~~~l~~r~~~~~~Rl~~f~~~~D~~~~~~~l~~~~~~~~~~ 67 (118)
T PF11236_consen 16 VNVGVVLFCPEQGFLDFRFHLDRKRLRAFFPELDIDLVRAALEAFERECAGI 67 (118)
T ss_pred EEEEEEEEeCCCCeEEEEEeCCHHHHHHhCccCCHHHHHHHHHHHHHHHccC
Confidence 4689999998655433333322344433344444555555555555555443
No 88
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.81 E-value=1.5e+02 Score=19.66 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
..+..+..+...|.+++..+..+...+...+.+
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666655555544
No 89
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.74 E-value=97 Score=24.10 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+..|++++..|+-+++....+++.+.+..++
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 57777778888888888777777777776665
No 90
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.23 E-value=1.4e+02 Score=19.08 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=35.2
Q ss_pred hhhhhhcccceEEEeeeCCCCceeeecCCCChhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 39 SEFVTLTSSAIAIVVFSQSGKPYIFLHNDNIHPLVKAYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 39 ~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~~~~~~~~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
.||..+-+- ..||-.-|+.|.-.+.+.... .-......+..++..|..++..+.++..+++..+.+.
T Consensus 36 ~eL~~l~~~---~~~y~~vG~~fv~~~~~~~~~----~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 36 EELEKLDDD---RKVYKSVGKMFVKQDKEEAIE----ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHTSSTT----EEEEEETTEEEEEEHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCc---chhHHHHhHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666544 333333366665543222222 2223345556666666666666666666666666543
No 91
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=32.01 E-value=1.8e+02 Score=20.30 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
.+...+..|...++.++.++..++.+
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere 88 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERE 88 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 92
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=30.70 E-value=69 Score=16.77 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=15.0
Q ss_pred cceEEEeeeCCCCceeeecCC
Q 040485 47 SAIAIVVFSQSGKPYIFLHND 67 (116)
Q Consensus 47 ~~v~~vv~s~~g~~~~~~s~s 67 (116)
..-.-..+||+|+...|++.-
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEEC
T ss_pred ccccCEEEecCCCEEEEEecC
Confidence 345668899999988887753
No 93
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=30.34 E-value=1.3e+02 Score=19.26 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 86 QQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 86 ~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
.++.++++.|+..+++.+--..+.-|+.|
T Consensus 12 ~d~~~i~~rLd~iEeKVEf~~~E~~Qr~G 40 (70)
T TIGR01149 12 DEFNEVMKRLDEIEEKVEFVNGEVAQRIG 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777666666665544
No 94
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=30.06 E-value=1.7e+02 Score=19.49 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=29.7
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 74 KAYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 74 ~~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
......-...+...++.+...++.++++.+.|+..+.+.+.
T Consensus 62 ~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 62 KTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43444456777888888888888888888888887776653
No 95
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.96 E-value=1.6e+02 Score=19.33 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKE 100 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~ 100 (116)
++..|..+++.|+++...+..
T Consensus 19 tI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444444
No 96
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=29.52 E-value=1.1e+02 Score=19.47 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 87 QHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 87 ~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
++-.|.++++.++.++.+|++.++
T Consensus 66 ~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 66 RILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444588888888888888887664
No 97
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.44 E-value=2.6e+02 Score=24.63 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=16.8
Q ss_pred hhhhhhhhcccceEEEeeeCC-C------CceeeecCCC
Q 040485 37 KASEFVTLTSSAIAIVVFSQS-G------KPYIFLHNDN 68 (116)
Q Consensus 37 Ka~ELs~Lc~~~v~~vv~s~~-g------~~~~~~s~s~ 68 (116)
+|+.|.-. |.+-..++|.+. | .||.|..|.+
T Consensus 78 ~ayyLPk~-~~e~YqfcYv~~~g~V~G~S~pFqf~~~~p 115 (546)
T PF07888_consen 78 QAYYLPKD-DDEFYQFCYVDQKGEVRGASTPFQFRAPKP 115 (546)
T ss_pred CcccCCCC-CCCeEEEEEECCCccEEEecCCcccCCCCc
Confidence 45666643 334445555542 2 4777877654
No 98
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=29.29 E-value=1.8e+02 Score=20.94 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
.+|..+-..|++|++.++.++..+..+..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677777777777666665544
No 99
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.15 E-value=1.6e+02 Score=20.25 Aligned_cols=31 Identities=19% Similarity=0.107 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
+.++..++..|..+.+.++++..+++..+++
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555544443
No 100
>PRK14127 cell division protein GpsB; Provisional
Probab=28.86 E-value=1.7e+02 Score=20.17 Aligned_cols=34 Identities=9% Similarity=0.218 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
+...-..|+.|..++..+++++..|+..+.+.+.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567788888888888888888888777653
No 101
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=28.09 E-value=1.9e+02 Score=20.43 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
..-..+.++.+|..++...+.+++.|..+..+.
T Consensus 61 ~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dL 93 (120)
T COG4839 61 KAYQVQGEITDLESKISEQKTENDDLKQEVKDL 93 (120)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 344557888999999999999999998887654
No 102
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=27.98 E-value=1.5e+02 Score=20.80 Aligned_cols=26 Identities=19% Similarity=0.251 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 85 NQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 85 ~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
..+.+-|+++|..+.+++..|++++.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~ 91 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENS 91 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777776654
No 103
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.83 E-value=1.2e+02 Score=24.03 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
.+...+..+++.++.+.+++.+|.+++.+.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleel 161 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEEL 161 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554443
No 104
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=27.56 E-value=1.5e+02 Score=18.55 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKML 105 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL 105 (116)
..+.++++.+.-|+.+|+.++.+..+-
T Consensus 25 lsV~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 25 LSVAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888888888777765543
No 105
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=27.36 E-value=56 Score=25.66 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=25.2
Q ss_pred hhhhhhcccceEEEeeeCCCCceeeecCCC
Q 040485 39 SEFVTLTSSAIAIVVFSQSGKPYIFLHNDN 68 (116)
Q Consensus 39 ~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~ 68 (116)
.+|.-.+|++|+|||.+..|.+|-.+....
T Consensus 134 ~~l~~~~g~~v~VIItDt~gr~~R~G~t~v 163 (245)
T PRK13293 134 EGLEELTGKKVGVIITDTNGRPFRKGQRGV 163 (245)
T ss_pred HHHHHHHCCCEEEEEEcCCCcccccCCcce
Confidence 346677999999999999999998888743
No 106
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.32 E-value=1.9e+02 Score=21.34 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
...+..+...|+.++..++.+++.|+.++..
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~ 129 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEK 129 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666666655544
No 107
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=27.25 E-value=1.9e+02 Score=23.12 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
....|..+...++.+.+..+++.+++++.++....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566667777777777777777777777766544
No 108
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.17 E-value=1.8e+02 Score=22.39 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040485 84 LNQQHNDLLRQLDEEKEQEK 103 (116)
Q Consensus 84 l~~~~~~L~~ql~~~k~~~~ 103 (116)
+..+...|++++..++.+..
T Consensus 74 l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 74 LREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 109
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=27.05 E-value=1.4e+02 Score=17.37 Aligned_cols=26 Identities=23% Similarity=0.343 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 86 QQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 86 ~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
..+..|..++..++.++..|...+..
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555443
No 110
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.02 E-value=1.8e+02 Score=23.23 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 86 QQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 86 ~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
.++++++.++..++.+.+.+.+.++
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333
No 111
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=26.40 E-value=2.1e+02 Score=19.43 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
.+..++..++.+++.+..++..|.++++..
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L 83 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDL 83 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555555443
No 112
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=26.39 E-value=1.9e+02 Score=22.00 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
+.+.+.++...-.+|..++..|.+|++.+++
T Consensus 43 m~evNrrlQ~hl~EIR~LKe~NqkLqedNqE 73 (195)
T PF10226_consen 43 MKEVNRRLQQHLNEIRGLKEVNQKLQEDNQE 73 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555544
No 113
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.33 E-value=1.9e+02 Score=19.10 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040485 90 DLLRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 90 ~L~~ql~~~k~~~~kL~~ 107 (116)
+++.+++++.++++-|..
T Consensus 27 ka~~~~~kL~~en~qlk~ 44 (87)
T PF10883_consen 27 KAKKQNAKLQKENEQLKT 44 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 114
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=26.21 E-value=1.6e+02 Score=19.15 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 86 QQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 86 ~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
.++.++++.|+..+++.+--..+.-|+.|
T Consensus 15 ~d~~~i~~rLD~iEeKVEftn~Ei~Qr~G 43 (77)
T PRK01026 15 KDFKEIQKRLDEIEEKVEFTNAEIFQRIG 43 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777776666666655544
No 115
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.20 E-value=50 Score=28.53 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~ 107 (116)
.+..|.+|+++|++|++.+.++.++.++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 5788888888888888877777766654
No 116
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.10 E-value=1.6e+02 Score=23.39 Aligned_cols=13 Identities=0% Similarity=0.179 Sum_probs=7.7
Q ss_pred hcccceEEEeeeC
Q 040485 44 LTSSAIAIVVFSQ 56 (116)
Q Consensus 44 Lc~~~v~~vv~s~ 56 (116)
--|||+.+|..+.
T Consensus 55 aeGADlvlIATDa 67 (290)
T COG4026 55 AEGADLVLIATDA 67 (290)
T ss_pred hccCCEEEEeecC
Confidence 3477776665553
No 117
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.94 E-value=1.9e+02 Score=18.55 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
+..+|..++..|.+++...+.-+.+++..
T Consensus 53 s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 53 SVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677778888888887777777766654
No 118
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=25.59 E-value=1.8e+02 Score=18.25 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKML 105 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL 105 (116)
....+..+|+.+++.++++++..
T Consensus 44 ~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 44 DAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555554443
No 119
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=25.32 E-value=50 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.0
Q ss_pred hhhhcccceEEEeeeCCCCceee
Q 040485 41 FVTLTSSAIAIVVFSQSGKPYIF 63 (116)
Q Consensus 41 Ls~Lc~~~v~~vv~s~~g~~~~~ 63 (116)
+.++|+|+|-++|.+-+.+...|
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f 81 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRF 81 (148)
T ss_pred HHHhhccceeeeeecccCccccC
Confidence 67889999999998877664444
No 120
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.30 E-value=1.8e+02 Score=23.38 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
...+|.++-..|+.+++.++.+.+.++++++.+
T Consensus 5 ~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emrts 37 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIEQLERRRERIEKEMRTS 37 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 457788888899999999999999999998864
No 121
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=25.05 E-value=1.6e+02 Score=17.37 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQE 102 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~ 102 (116)
.|.+|.+.|+.++..++...
T Consensus 3 aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566666555555443
No 122
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.85 E-value=2.5e+02 Score=19.67 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
....+..++..|..+.+.++++.++|+..+...
T Consensus 78 r~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 78 RKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666677666666554
No 123
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=24.56 E-value=2.3e+02 Score=21.14 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.+.....|...|.+++..++.++..|-+..++|+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne 74 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENE 74 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666678888999999999999999988888775
No 124
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=24.47 E-value=2e+02 Score=22.88 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
+++.++.+++.+|-++.+.+..+++.|++.+.
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777776666543
No 125
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=24.45 E-value=35 Score=27.90 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=20.7
Q ss_pred hhhhhhhhcccceEEEeeeCC--CCceeee
Q 040485 37 KASEFVTLTSSAIAIVVFSQS--GKPYIFL 64 (116)
Q Consensus 37 Ka~ELs~Lc~~~v~~vv~s~~--g~~~~~~ 64 (116)
.+-..++||||+++++.|+.. |..|.|.
T Consensus 270 ~~v~ralLlGaQA~~~A~G~~~~~~~~~w~ 299 (341)
T PF13252_consen 270 VAVARALLLGAQALVIAFGKSGSGMRFFWV 299 (341)
T ss_pred cceeeeeeechhheeeeeeccCCCcccccc
Confidence 345578999999999999983 3455554
No 126
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.94 E-value=2.1e+02 Score=18.42 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=28.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 76 YRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 76 ~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
++...+.+|+..+.+.+..+++.+.++.-|-+.+...+.
T Consensus 19 fQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 19 FQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455678888888777777777777777777777666543
No 127
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=23.90 E-value=1.8e+02 Score=23.83 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040485 86 QQHNDLLRQLDEEKEQEKMLKQMRRVKETQ 115 (116)
Q Consensus 86 ~~~~~L~~ql~~~k~~~~kL~~~~r~~~~~ 115 (116)
.+++.+.+.|..++++.+.|.+.+++.+.+
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 466777777777777777777777766544
No 128
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=23.82 E-value=97 Score=20.38 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
-.+-|+..|.+.++++..+=.+.+.|.+..|...+
T Consensus 47 L~kHWN~~~PeaK~~ik~li~~Ik~lNe~~r~~~~ 81 (82)
T PF10835_consen 47 LAKHWNGTYPEAKEEIKELIEEIKQLNEAHRANKQ 81 (82)
T ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 36677888888888888888888888888887653
No 129
>PRK14011 prefoldin subunit alpha; Provisional
Probab=23.58 E-value=2.8e+02 Score=19.82 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLK 106 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~ 106 (116)
++.++......|.+.++........|.
T Consensus 96 ri~~l~~~~~~l~~~i~~~~~~~~~l~ 122 (144)
T PRK14011 96 SVEELDKTKKEGNKKIEELNKEITKLR 122 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 130
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=23.47 E-value=1.3e+02 Score=26.00 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 86 QQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 86 ~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
+++..|+.||..++++..+|+..+.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666666554
No 131
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.29 E-value=2.5e+02 Score=19.03 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
.+..++..++++.+.++..+.++.+++
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333
No 132
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.94 E-value=50 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=13.4
Q ss_pred ccceEEEeeeCCCCcee
Q 040485 46 SSAIAIVVFSQSGKPYI 62 (116)
Q Consensus 46 ~~~v~~vv~s~~g~~~~ 62 (116)
+-|-+|-||||+|.++.
T Consensus 3 rydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 3 RYDRALTVFSPDGHLFQ 19 (249)
T ss_pred ccccceEEECCCCCEEe
Confidence 34778999999998654
No 133
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.67 E-value=2e+02 Score=20.87 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040485 90 DLLRQLDEEKEQEKMLK 106 (116)
Q Consensus 90 ~L~~ql~~~k~~~~kL~ 106 (116)
.+.++++.+++++++.+
T Consensus 158 ~~~~ei~~lk~el~~~~ 174 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKE 174 (192)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 134
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=22.56 E-value=2.8e+02 Score=19.35 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 88 HNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 88 ~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
.+.++++++.++.+.++|+...+..
T Consensus 107 e~~~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 107 EEELQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666555543
No 135
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=22.36 E-value=3.2e+02 Score=21.55 Aligned_cols=27 Identities=7% Similarity=0.252 Sum_probs=22.7
Q ss_pred hhhhcccceEEEeeeCCCCceeeecCC
Q 040485 41 FVTLTSSAIAIVVFSQSGKPYIFLHND 67 (116)
Q Consensus 41 Ls~Lc~~~v~~vv~s~~g~~~~~~s~s 67 (116)
|+.-..-+|+||.+++++..|.|++|.
T Consensus 39 L~l~~~N~vaVIAs~~~~s~~LYP~~~ 65 (276)
T PF03850_consen 39 LALNHSNQVAVIASHSNSSKFLYPSPS 65 (276)
T ss_pred HhhCccCCEEEEEEcCCccEEEeCCCc
Confidence 555566689999999999999999987
No 136
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.25 E-value=1.9e+02 Score=24.91 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~ 107 (116)
..+.+..++..|..+.+.++++|+.|++
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666655
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.13 E-value=1.8e+02 Score=23.32 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
+..+..+...+.+++..++.+...|.+++..
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554444444443
No 138
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=22.09 E-value=1.3e+02 Score=24.41 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=27.4
Q ss_pred CCccccccccccchh---------hhhhhhhhhcccceEEEeeeCCCC
Q 040485 21 DDRLITFSKRRSGIY---------KKASEFVTLTSSAIAIVVFSQSGK 59 (116)
Q Consensus 21 ~~R~~tf~KR~~Gl~---------KKa~ELs~Lc~~~v~~vv~s~~g~ 59 (116)
..+-+-||+-|..|- -+.-++.+-||.|.-+.+..++|+
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~ 227 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGP 227 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCC
Confidence 445566666665343 444568999999998888888776
No 139
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=22.08 E-value=3.9e+02 Score=20.94 Aligned_cols=17 Identities=6% Similarity=-0.078 Sum_probs=10.5
Q ss_pred hhhhcccceEEEeeeCC
Q 040485 41 FVTLTSSAIAIVVFSQS 57 (116)
Q Consensus 41 Ls~Lc~~~v~~vv~s~~ 57 (116)
|+-+-.||+.+.|+...
T Consensus 87 L~~i~~~D~li~VV~~f 103 (274)
T cd01900 87 LSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHhCCEEEEEEeCc
Confidence 44455677777776543
No 140
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=21.98 E-value=33 Score=24.28 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=28.8
Q ss_pred eccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceee
Q 040485 17 IENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIF 63 (116)
Q Consensus 17 I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~ 63 (116)
|.++.....||-=.-..+..+.-+|+.+ |++.|++.|+.|-.
T Consensus 41 v~~k~~ytktF~V~vaN~s~~~idLsk~-----Cf~a~~~~gk~f~l 82 (124)
T PF14263_consen 41 VGGKSFYTKTFDVTVANLSDKDIDLSKM-----CFKAYSPDGKEFKL 82 (124)
T ss_dssp ETTEEEEEEEEEEEEEE-SSS-EE-TT------EEEEEETTS-EEEE
T ss_pred ecCccceEEEEEEEEecCCCCccccccc-----hhhhccccCCEEEe
Confidence 4566666777877888888888889888 49999999986654
No 141
>PRK10722 hypothetical protein; Provisional
Probab=21.94 E-value=2.9e+02 Score=21.79 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
.+..+.++...|+.+++...++++.|....|+.
T Consensus 177 qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 177 ELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777877788888887777765
No 142
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.83 E-value=1.6e+02 Score=25.40 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQ 94 (116)
Q Consensus 81 ~~~l~~~~~~L~~q 94 (116)
..+|..+++.|+.+
T Consensus 78 asELEKqLaaLrqE 91 (475)
T PRK13729 78 AAQMQKQYEEIRRE 91 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 143
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=21.75 E-value=33 Score=26.27 Aligned_cols=29 Identities=14% Similarity=0.399 Sum_probs=22.0
Q ss_pred hhhhhhcccceEEEeeeCCCCceeeecCC
Q 040485 39 SEFVTLTSSAIAIVVFSQSGKPYIFLHND 67 (116)
Q Consensus 39 ~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s 67 (116)
.+|--.||.+|+|||.+++|.+|..+++.
T Consensus 141 ~~l~~~~g~~v~ViI~Dt~gr~~r~G~~~ 169 (228)
T PF01996_consen 141 EELKERTGKDVGVIITDTNGRPWRLGQTG 169 (228)
T ss_dssp HHHHHHHS---EEEEEEEEEETTEECEEE
T ss_pred HHHHHHHCCceEEEEECCCCcEEecCCcc
Confidence 45777899999999999999999988773
No 144
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.57 E-value=2.6e+02 Score=18.76 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
..+..+......|.+++..++.+...+...+.+
T Consensus 94 ~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 94 KKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554443
No 145
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=21.56 E-value=1.4e+02 Score=21.06 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 86 QQHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 86 ~~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
+++..|.+++..++++|+.|.+++
T Consensus 96 q~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 96 QHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHh
Confidence 457788899999999999998765
No 146
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=21.46 E-value=1.4e+02 Score=18.80 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.4
Q ss_pred cchhhhhhhhhhhcccceEEEeeeCCCCceeee
Q 040485 32 SGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFL 64 (116)
Q Consensus 32 ~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~ 64 (116)
..+..+--++=++.|++|.++-..|-|.|..|.
T Consensus 20 ~~~~~rL~~mGl~pG~~V~v~~~aP~gdPi~i~ 52 (74)
T PRK09555 20 PAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIE 52 (74)
T ss_pred hHHHHHHHHcCCCCCCEEEEEEECCCCCCEEEE
Confidence 457788899999999999999999988877664
No 147
>PHA00327 minor capsid protein
Probab=21.33 E-value=2.7e+02 Score=20.88 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
...+--++.+++.++..+.+++..++-.
T Consensus 110 v~~l~~~~~r~~aelQnL~~q~r~in~~ 137 (187)
T PHA00327 110 VQRLTYERKRMQAELQNLREQNRLINFN 137 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455556666677777777666666533
No 148
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=21.22 E-value=69 Score=22.93 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=28.0
Q ss_pred hhhhhcccce----EEEeeeCCCCceeeecCCCChhhHHhhhhhhhHHHHHHH
Q 040485 40 EFVTLTSSAI----AIVVFSQSGKPYIFLHNDNIHPLVKAYRHARINELNQQH 88 (116)
Q Consensus 40 ELs~Lc~~~v----~~vv~s~~g~~~~~~s~s~~~~~~~~~~~~~~~~l~~~~ 88 (116)
++|..||..| +.+.+-.+|+.|.|++.-..... ...+++..-.|-..|
T Consensus 5 e~CsFcG~kIyPG~G~~fVR~DGkvf~FcssKC~k~f-~~kRnPRKlkWT~~y 56 (131)
T PRK14891 5 RTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKNY-DLGREARDLEWTEAG 56 (131)
T ss_pred eeecCcCCcccCCCCcEEEecCCCEEEEecHHHHHHH-HccCCCccchhHHHH
Confidence 4677787776 45555677899999987553222 233334434444433
No 149
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=21.06 E-value=2.6e+02 Score=18.44 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
..++.++.....+++..+++.+-|+...
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~ 31 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRK 31 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444443
No 150
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=20.94 E-value=2.4e+02 Score=18.06 Aligned_cols=29 Identities=17% Similarity=0.254 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
..+..++..++.+.+.++.++..|.-+..
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666655443
No 151
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=20.83 E-value=57 Score=18.41 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=16.5
Q ss_pred hcccce---EEEeeeCCCCceeeecCCCC
Q 040485 44 LTSSAI---AIVVFSQSGKPYIFLHNDNI 69 (116)
Q Consensus 44 Lc~~~v---~~vv~s~~g~~~~~~s~s~~ 69 (116)
.||..| +-..+.-+|+.|-|+|+..-
T Consensus 5 vcg~~v~~~~~~~~~y~G~~Y~FCS~~C~ 33 (47)
T PF04945_consen 5 VCGMKVPGNAAYSVEYNGRTYYFCSEGCK 33 (47)
T ss_dssp GGG-BE-----EEEEETTEEEEESSHHHH
T ss_pred CCCCEEccCccEEEEECCEEEEEcCHHHH
Confidence 366666 55556667999999987543
No 152
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.81 E-value=2.9e+02 Score=18.90 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
...+...++.+...+..++++.+.|++.+.+.+
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666665555543
No 153
>PHA02047 phage lambda Rz1-like protein
Probab=20.80 E-value=2.8e+02 Score=18.90 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~ 107 (116)
.+.++++.++.++...++..++|+.
T Consensus 38 ~la~qLE~a~~r~~~~Q~~V~~l~~ 62 (101)
T PHA02047 38 RQTARLEALEVRYATLQRHVQAVEA 62 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 154
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=20.72 E-value=81 Score=24.98 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=21.3
Q ss_pred hhhcccceEEEeeeCC--CCceeeecCC
Q 040485 42 VTLTSSAIAIVVFSQS--GKPYIFLHND 67 (116)
Q Consensus 42 s~Lc~~~v~~vv~s~~--g~~~~~~s~s 67 (116)
+++-|.++||+.|+.. ||.|+...+.
T Consensus 68 ~~~~G~n~~i~ayG~tgSGKT~Tm~G~~ 95 (341)
T cd01372 68 GLFEGYNATVLAYGQTGSGKTYTMGTAF 95 (341)
T ss_pred HHhCCCccceeeecCCCCCCcEEecCCC
Confidence 4578999999999985 5888887764
No 155
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.71 E-value=2.6e+02 Score=18.33 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=28.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 78 HARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 78 ~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
..-..++..++..|+++++.+.....++......-
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~ 110 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQL 110 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888899999999999999988888877643
No 156
>PRK09039 hypothetical protein; Validated
Probab=20.58 E-value=2.6e+02 Score=22.65 Aligned_cols=28 Identities=29% Similarity=0.223 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
+..|++++..|..|+..++..++.+++.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 157
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=20.46 E-value=4.4e+02 Score=21.78 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=15.7
Q ss_pred cchhhhhhh--------hhhhcccceEEEeeeC
Q 040485 32 SGIYKKASE--------FVTLTSSAIAIVVFSQ 56 (116)
Q Consensus 32 ~Gl~KKa~E--------Ls~Lc~~~v~~vv~s~ 56 (116)
+||.+.|++ |.-+-.||+.+.|+..
T Consensus 74 pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 74 AGLVKGASKGEGLGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred CCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeC
Confidence 566655544 4446678887777664
No 158
>PRK09039 hypothetical protein; Validated
Probab=20.13 E-value=2.4e+02 Score=22.91 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
..+.+.++..|+.||+.++.++..|+..+...+
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777777777777777766654
Done!