Query 040485
Match_columns 116
No_of_seqs 123 out of 1091
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 14:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mnm_A Protein (MCM1 transcrip 100.0 2.9E-34 1E-38 194.4 3.6 83 3-88 12-94 (100)
2 1hbx_A SRF, serum response fac 100.0 1.9E-34 6.3E-39 193.0 1.2 69 2-70 5-73 (92)
3 1k6o_B SRF, serum response fac 100.0 5.1E-34 1.7E-38 194.2 1.4 69 2-70 4-72 (103)
4 1egw_A MADS box transcription 100.0 1.8E-33 6.2E-38 182.9 1.9 71 8-79 1-71 (77)
5 3p57_A Myocyte-specific enhanc 100.0 5.8E-33 2E-37 185.0 1.7 70 8-78 1-70 (90)
6 2yy0_A C-MYC-binding protein; 79.5 4 0.00014 23.7 4.5 33 79-111 19-51 (53)
7 1a93_B MAX protein, coiled coi 76.6 4.3 0.00015 21.7 3.7 30 83-112 4-33 (34)
8 1nkp_B MAX protein, MYC proto- 76.0 6.2 0.00021 24.4 5.0 35 80-114 48-82 (83)
9 1uii_A Geminin; human, DNA rep 73.7 8.4 0.00029 24.6 5.2 33 81-113 48-80 (83)
10 1l8d_A DNA double-strand break 71.8 10 0.00034 24.4 5.5 31 80-110 72-102 (112)
11 1deb_A APC protein, adenomatou 69.3 9.3 0.00032 22.2 4.2 23 88-110 5-27 (54)
12 1t6f_A Geminin; coiled-coil, c 66.5 12 0.00039 20.3 4.0 26 82-107 10-35 (37)
13 3efg_A Protein SLYX homolog; x 65.9 9.3 0.00032 23.8 4.1 39 75-113 24-62 (78)
14 3twe_A Alpha4H; unknown functi 64.8 11 0.00039 18.6 3.8 19 82-100 4-22 (27)
15 2pnv_A Small conductance calci 64.3 16 0.00056 20.3 5.1 31 80-110 10-40 (43)
16 1wlq_A Geminin; coiled-coil; 2 64.0 14 0.00047 23.5 4.7 32 81-112 40-71 (83)
17 1go4_E MAD1 (mitotic arrest de 62.5 9.7 0.00033 25.0 3.9 27 86-112 12-38 (100)
18 2yy0_A C-MYC-binding protein; 62.2 17 0.00057 21.0 4.5 25 87-111 20-44 (53)
19 1nkp_A C-MYC, MYC proto-oncoge 60.8 24 0.00082 22.1 5.5 36 79-114 52-87 (88)
20 2zxx_A Geminin; coiled-coil, c 60.5 14 0.00047 23.3 4.1 32 81-112 36-67 (79)
21 2oqq_A Transcription factor HY 60.4 20 0.00068 19.9 5.2 31 80-110 11-41 (42)
22 2wvr_A Geminin; DNA replicatio 59.2 18 0.00062 26.7 5.2 33 81-113 117-149 (209)
23 2l5g_B Putative uncharacterize 58.6 22 0.00074 19.8 5.0 27 82-108 12-38 (42)
24 1nlw_A MAD protein, MAX dimeri 52.6 29 0.001 21.4 4.7 32 79-110 47-78 (80)
25 2dgc_A Protein (GCN4); basic d 45.4 38 0.0013 20.0 4.3 25 87-111 31-55 (63)
26 2oa5_A Hypothetical protein BQ 45.2 14 0.00049 24.6 2.5 24 88-111 10-33 (110)
27 1jcd_A Major outer membrane li 44.5 44 0.0015 19.2 4.5 28 81-108 6-33 (52)
28 2w6b_A RHO guanine nucleotide 44.1 47 0.0016 19.5 5.5 34 78-111 16-49 (56)
29 2z5i_A TM, general control pro 43.8 44 0.0015 19.0 5.3 34 79-112 12-45 (52)
30 3hnw_A Uncharacterized protein 41.6 53 0.0018 22.3 5.1 9 58-66 16-24 (138)
31 3mud_A DNA repair protein XRCC 41.1 68 0.0023 22.9 5.7 36 76-111 132-167 (175)
32 3w03_C DNA repair protein XRCC 40.9 39 0.0013 24.3 4.5 33 81-113 147-179 (184)
33 3nrf_A APAG protein; structura 40.3 5.5 0.00019 26.5 -0.2 43 17-64 21-63 (106)
34 2wuj_A Septum site-determining 39.9 33 0.0011 19.8 3.3 26 82-107 30-55 (57)
35 3m91_A Proteasome-associated A 39.8 47 0.0016 19.0 3.9 16 92-107 29-44 (51)
36 1am9_A Srebp-1A, protein (ster 39.2 47 0.0016 20.4 4.2 25 88-112 52-76 (82)
37 2wg5_A General control protein 39.1 42 0.0014 21.8 4.1 26 81-106 9-34 (109)
38 3mq7_A Bone marrow stromal ant 38.7 69 0.0024 21.6 5.1 30 81-110 73-102 (121)
39 1ci6_A Transcription factor AT 37.8 61 0.0021 18.9 5.4 28 81-108 25-52 (63)
40 3iyn_Q Protein IX, PIX, hexon- 36.2 1E+02 0.0035 21.1 5.8 37 74-110 93-129 (140)
41 2w83_C C-JUN-amino-terminal ki 35.7 64 0.0022 20.1 4.3 34 80-113 38-71 (77)
42 2wg5_A General control protein 34.9 57 0.0019 21.1 4.2 30 87-116 8-37 (109)
43 1dh3_A Transcription factor CR 34.3 66 0.0023 18.3 4.9 25 88-112 24-48 (55)
44 3kin_B Kinesin heavy chain; mo 32.1 1E+02 0.0034 20.2 5.1 32 80-111 83-114 (117)
45 1hjb_A Ccaat/enhancer binding 32.0 97 0.0033 19.5 5.4 28 83-110 47-74 (87)
46 3i00_A HIP-I, huntingtin-inter 31.4 1.1E+02 0.0036 20.4 5.2 18 81-98 42-59 (120)
47 2zvv_Y Cyclin-dependent kinase 31.3 11 0.00038 18.7 0.2 12 21-32 15-26 (26)
48 2wt7_A Proto-oncogene protein 31.0 80 0.0028 18.3 5.5 28 81-108 25-52 (63)
49 2jee_A YIIU; FTSZ, septum, coi 29.5 1.1E+02 0.0036 19.2 5.4 20 81-100 22-41 (81)
50 2phn_A F420-0:gamma-glutamyl l 28.7 14 0.00048 28.0 0.4 28 40-67 138-165 (254)
51 2l5g_A GPS2 protein, G protein 27.5 79 0.0027 17.1 4.5 23 80-102 9-31 (38)
52 3m48_A General control protein 27.5 73 0.0025 16.7 3.1 26 83-108 4-29 (33)
53 1dip_A Delta-sleep-inducing pe 27.1 88 0.003 19.4 3.8 27 81-107 17-43 (78)
54 1jnm_A Proto-oncogene C-JUN; B 26.9 95 0.0033 17.8 5.2 31 80-110 23-53 (62)
55 2rpa_A Katanin P60 ATPase-cont 26.3 31 0.001 21.4 1.6 21 35-55 16-36 (78)
56 1gd2_E Transcription factor PA 26.3 77 0.0026 19.1 3.5 28 81-108 31-58 (70)
57 2v4h_A NF-kappa-B essential mo 26.0 1.1E+02 0.0038 20.2 4.4 28 81-108 26-53 (110)
58 1gmj_A ATPase inhibitor; coile 25.8 1.3E+02 0.0044 19.0 4.6 14 91-104 63-76 (84)
59 2xdj_A Uncharacterized protein 25.8 1.2E+02 0.0042 18.8 5.4 21 83-103 24-44 (83)
60 1zme_C Proline utilization tra 25.6 63 0.0022 18.3 2.9 20 89-108 47-66 (70)
61 1q08_A Zn(II)-responsive regul 25.5 1.2E+02 0.004 18.4 5.4 33 81-113 41-73 (99)
62 1t2k_D Cyclic-AMP-dependent tr 25.0 1E+02 0.0035 17.6 5.5 29 81-109 24-52 (61)
63 1a92_A Delta antigen; leucine 24.9 1E+02 0.0035 17.5 4.2 24 85-108 13-36 (50)
64 3v86_A De novo design helix; c 24.5 72 0.0025 15.6 4.0 22 84-105 5-26 (27)
65 2akf_A Coronin-1A; coiled coil 24.1 83 0.0028 16.1 4.4 24 85-108 5-28 (32)
66 3tnu_B Keratin, type II cytosk 24.0 1.6E+02 0.0053 19.3 5.3 32 80-111 37-68 (129)
67 4b4t_K 26S protease regulatory 24.0 1.5E+02 0.0052 23.5 5.7 35 81-115 58-92 (428)
68 1kd8_A GABH AIV, GCN4 acid bas 23.7 93 0.0032 16.6 4.9 32 82-113 4-35 (36)
69 3a7p_A Autophagy protein 16; c 23.7 1.7E+02 0.0059 20.4 5.3 27 83-109 100-126 (152)
70 1kd8_B GABH BLL, GCN4 acid bas 23.6 93 0.0032 16.6 5.3 32 81-112 3-34 (36)
71 3n7n_E Monopolin complex subun 22.6 18 0.00062 23.5 0.0 28 83-110 47-74 (95)
72 2w6a_A ARF GTPase-activating p 22.4 1.3E+02 0.0045 17.9 5.0 32 79-110 27-58 (63)
73 1fxk_C Protein (prefoldin); ar 22.4 1.6E+02 0.0056 19.0 6.5 35 78-112 94-128 (133)
74 2zdi_C Prefoldin subunit alpha 22.3 1.8E+02 0.0061 19.4 6.9 34 79-112 105-138 (151)
75 3izc_Z 60S ribosomal protein R 22.0 41 0.0014 23.7 1.7 27 40-66 4-34 (155)
76 1fxk_A Prefoldin; archaeal pro 21.8 1.5E+02 0.0051 18.2 5.2 30 82-111 11-40 (107)
77 3m9b_A Proteasome-associated A 21.8 1.1E+02 0.0037 23.1 4.2 32 81-112 63-94 (251)
78 4a17_T RPL24, 60S ribosomal pr 21.7 40 0.0014 23.8 1.7 27 40-66 6-36 (158)
79 1gk7_A Vimentin; intermediate 21.5 1.1E+02 0.0036 16.4 4.7 33 78-110 5-37 (39)
80 3tnu_A Keratin, type I cytoske 21.3 1.6E+02 0.0055 19.3 4.7 29 81-109 40-68 (131)
81 2zqm_A Prefoldin beta subunit 21.2 1.6E+02 0.0054 18.4 7.4 35 79-113 77-111 (117)
82 2ke4_A CDC42-interacting prote 20.9 1.7E+02 0.0059 18.6 4.5 30 81-110 17-46 (98)
83 3s9g_A Protein hexim1; cyclin 20.6 1.9E+02 0.0064 18.9 5.7 23 87-109 66-88 (104)
84 4emc_A Monopolin complex subun 20.1 1.9E+02 0.0066 20.9 5.1 25 85-109 33-57 (190)
85 1hlo_A Protein (transcription 20.0 74 0.0025 19.2 2.5 20 88-107 59-78 (80)
No 1
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=2.9e-34 Score=194.44 Aligned_cols=83 Identities=37% Similarity=0.505 Sum_probs=71.0
Q ss_pred CCCCCCccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCCCChhhHHhhhhhhhH
Q 040485 3 GKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDNIHPLVKAYRHARIN 82 (116)
Q Consensus 3 ~~~~~gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~~~~~~~~~~~~~~~ 82 (116)
++++|||+||+|++|+|+.+|++||+||+.||||||+||||||||+||||||||+|++|.|++|+.. .++++|.. ..
T Consensus 12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~-~il~r~~G--~~ 88 (100)
T 1mnm_A 12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFE-PIVTQQEG--RN 88 (100)
T ss_dssp ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTT-HHHHSHHH--HH
T ss_pred CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHH-HHHHHhhC--Cc
Confidence 5789999999999999999999999999999999999999999999999999999999999999754 55565543 55
Q ss_pred HHHHHH
Q 040485 83 ELNQQH 88 (116)
Q Consensus 83 ~l~~~~ 88 (116)
.|...+
T Consensus 89 lw~~cl 94 (100)
T 1mnm_A 89 LIQACL 94 (100)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 565543
No 2
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.98 E-value=1.9e-34 Score=192.97 Aligned_cols=69 Identities=43% Similarity=0.605 Sum_probs=65.3
Q ss_pred CCCCCCCccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCCCCh
Q 040485 2 AGKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDNIH 70 (116)
Q Consensus 2 ~~~~~~gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~~~ 70 (116)
.+|++|||+||+|++|+|+.+|+|||+||+.||||||+||||||||+||||||||+|++|+|++|+...
T Consensus 5 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~ 73 (92)
T 1hbx_A 5 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQP 73 (92)
T ss_dssp -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGG
T ss_pred cCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999987543
No 3
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.98 E-value=5.1e-34 Score=194.23 Aligned_cols=69 Identities=43% Similarity=0.605 Sum_probs=65.2
Q ss_pred CCCCCCCccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCCCCh
Q 040485 2 AGKKTKRRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDNIH 70 (116)
Q Consensus 2 ~~~~~~gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~~~ 70 (116)
.+|++|||+||+|++|+|+.+|+|||+||+.||||||+||||||||+|||||||++|++|+|++|+...
T Consensus 4 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~ 72 (103)
T 1k6o_B 4 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQP 72 (103)
T ss_dssp -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGG
T ss_pred CCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHH
Confidence 378999999999999999999999999999999999999999999999999999999999999997543
No 4
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.97 E-value=1.8e-33 Score=182.89 Aligned_cols=71 Identities=32% Similarity=0.598 Sum_probs=66.5
Q ss_pred CccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCCCChhhHHhhhhh
Q 040485 8 RRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDNIHPLVKAYRHA 79 (116)
Q Consensus 8 gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~~~~~~~~~~~~ 79 (116)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+|||||||++|++|+|++|+ ...++++|...
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~-~~~il~ry~~~ 71 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD-MDKVLLKYTEY 71 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC-HHHHHHHHHHC
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC-HHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999999999875 66677888653
No 5
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.97 E-value=5.8e-33 Score=185.04 Aligned_cols=70 Identities=33% Similarity=0.617 Sum_probs=65.8
Q ss_pred CccccceEEeccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeeecCCCChhhHHhhhh
Q 040485 8 RRQKIEMKKIENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFLHNDNIHPLVKAYRH 78 (116)
Q Consensus 8 gR~ki~i~~I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~s~s~~~~~~~~~~~ 78 (116)
||+||+|++|+|+.+|+|||+||+.||||||+|||+||||+||||||||+|++|+|+||+ ...++++|+.
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~-~~~il~rY~~ 70 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD-MDKVLLKYTE 70 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSC-HHHHHHHHHH
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCC-HHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999964 6667788864
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.51 E-value=4 Score=23.73 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
..+..|..+...|+.+++.++.++++|...+.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888999999898888888877653
No 7
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=76.60 E-value=4.3 Score=21.75 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
++.......++.|+.++++|..|++..+..
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 355666778888888888888888887754
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=75.96 E-value=6.2 Score=24.38 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
-+..|..+...|..+++.++.++..|+..+...++
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47788888889999999999999999988876654
No 9
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=73.69 E-value=8.4 Score=24.56 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
...|+.+++.|++++..++..++.|+....+.+
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999988877654
No 10
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.83 E-value=10 Score=24.36 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
.+..+..++..|..++..++.+...|....+
T Consensus 72 ~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 72 DLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665543
No 11
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=69.32 E-value=9.3 Score=22.23 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040485 88 HNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 88 ~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
|++|-.|++.++++|..|+++++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 33444444444444444444443
No 12
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=66.51 E-value=12 Score=20.27 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~ 107 (116)
..|+..++.=+++|..++.+|+.|.+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45667778888888888888888865
No 13
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=65.91 E-value=9.3 Score=23.79 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=29.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 75 AYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 75 ~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.|....+..|+..+..-+.+|+.++.++..|.+.++..+
T Consensus 24 AfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 24 SFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466778889999988899999999988888887776544
No 14
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=64.79 E-value=11 Score=18.60 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040485 82 NELNQQHNDLLRQLDEEKE 100 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~ 100 (116)
.++..+++.||+.+.++.+
T Consensus 4 delykeledlqerlrklrk 22 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443
No 15
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=64.28 E-value=16 Score=20.31 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
-..+|+...+.|.++|..++.+++.|.+.+.
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888889999999999999998887654
No 16
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=63.98 E-value=14 Score=23.53 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
...|+..++.+++++..++.+|..|.+...+.
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999998887664
No 17
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.50 E-value=9.7 Score=25.02 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 86 QQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 86 ~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
.++..|..+++.++.+++.|++.....
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666655555443
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.15 E-value=17 Score=20.99 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 87 QHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 87 ~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.++.|+.+++.++.++..|.+.+.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554443
No 19
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.82 E-value=24 Score=22.13 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKET 114 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~~ 114 (116)
.-+..|..+...+..+++.++.++..|...+.+.++
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 347788888888888888899999999888877654
No 20
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=60.45 E-value=14 Score=23.32 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
...|+.+++.++++|..++.+|..|.+...+.
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888999999999988888777654
No 21
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=60.39 E-value=20 Score=19.95 Aligned_cols=31 Identities=19% Similarity=0.534 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
..+.+.....+|.+.+..++.+|..|++.+.
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4567777778888888888888888887654
No 22
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=59.20 E-value=18 Score=26.71 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
...|+.+++.+++++..++.+|+.|+....+.+
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999998877653
No 23
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=58.58 E-value=22 Score=19.80 Aligned_cols=27 Identities=11% Similarity=0.286 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
...+.++.+..++|..++++...|.+.
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555443
No 24
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=52.55 E-value=29 Score=21.40 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
+-+..|..+...+..+++.++.++..|+..+.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34777888888888888888888888887765
No 25
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=45.39 E-value=38 Score=19.97 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 87 QHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 87 ~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
++..|..+++.++.+|..|..++..
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 26
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=45.17 E-value=14 Score=24.63 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 88 HNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 88 ~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
+++|..+|.+++-+|+.|++.++.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888888888888887764
No 27
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=44.52 E-value=44 Score=19.22 Aligned_cols=28 Identities=4% Similarity=0.079 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
+..|..++..|..+++.++.+...|+-.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555443
No 28
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=44.06 E-value=47 Score=19.45 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 78 HARINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 78 ~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+.+.+|.++...|+.-++.+++--+.|++..+.
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888777777777664
No 29
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=43.78 E-value=44 Score=19.03 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
..+..|...++.|..++..++.++..+.+.+++-
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3467788888999999999999999998888764
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.61 E-value=53 Score=22.31 Aligned_cols=9 Identities=22% Similarity=0.002 Sum_probs=6.0
Q ss_pred CCceeeecC
Q 040485 58 GKPYIFLHN 66 (116)
Q Consensus 58 g~~~~~~s~ 66 (116)
|+.|..+.|
T Consensus 16 Gk~Y~i~g~ 24 (138)
T 3hnw_A 16 GKVIKLGGY 24 (138)
T ss_dssp TEEEEECSC
T ss_pred CEEEEecCC
Confidence 666666666
No 31
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=41.11 E-value=68 Score=22.95 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=28.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 76 YRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 76 ~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
|-...+..+..+++.|.+++..++.++..+.+.+.+
T Consensus 132 ~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888899999999999998888888765
No 32
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=40.93 E-value=39 Score=24.35 Aligned_cols=33 Identities=6% Similarity=-0.091 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
+.++-..+..|+.++..++++|+.|..+.....
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677777777777777777776665543
No 33
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=40.32 E-value=5.5 Score=26.53 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=33.2
Q ss_pred eccCCCccccccccccchhhhhhhhhhhcccceEEEeeeCCCCceeee
Q 040485 17 IENEDDRLITFSKRRSGIYKKASEFVTLTSSAIAIVVFSQSGKPYIFL 64 (116)
Q Consensus 17 I~~~~~R~~tf~KR~~Gl~KKa~ELs~Lc~~~v~~vv~s~~g~~~~~~ 64 (116)
|.++.-...||-=.-..|.++.-+|+.+| ++.|+|.|+-|..-
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~ld 63 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRLD 63 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEec
Confidence 44555666777777888889999999775 99999999866553
No 34
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=39.92 E-value=33 Score=19.77 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~ 107 (116)
..+-..+..|..++..++.++..|++
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555666666555555544
No 35
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=39.76 E-value=47 Score=19.01 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 040485 92 LRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 92 ~~ql~~~k~~~~kL~~ 107 (116)
-+.+.....++..|.+
T Consensus 29 ~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 29 METLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 36
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=39.24 E-value=47 Score=20.35 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 88 HNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 88 ~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
+..|+.+++.++.++..|+..+.++
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666665554
No 37
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=39.13 E-value=42 Score=21.77 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLK 106 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~ 106 (116)
++.|..+...|+.++..++++++.|+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555443
No 38
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.74 E-value=69 Score=21.59 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
+.+|..++..|+++|.....+.+.|+..+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 455555556666665555555555555443
No 39
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.84 E-value=61 Score=18.94 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
...+..+...|..+...++.+...|+.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 40
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=36.17 E-value=1e+02 Score=21.06 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=25.9
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 74 KAYRHARINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 74 ~~~~~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
..++.+.+..+-.+++.|.+||+.+..+...|.+..+
T Consensus 93 s~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~ 129 (140)
T 3iyn_Q 93 SSARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666667788888888888888877776543
No 41
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.66 E-value=64 Score=20.10 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.+.+|..+.+-|+.++...+.-..+++..+++.+
T Consensus 38 rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 38 KVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666665555544
No 42
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=34.89 E-value=57 Score=21.11 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 040485 87 QHNDLLRQLDEEKEQEKMLKQMRRVKETQP 116 (116)
Q Consensus 87 ~~~~L~~ql~~~k~~~~kL~~~~r~~~~~~ 116 (116)
...+|++++..++++...++++++..++.|
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345677777788888888888777766543
No 43
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=34.30 E-value=66 Score=18.33 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 88 HNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 88 ~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
++.|..++..++.+|..|...+...
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666665555443
No 44
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=32.14 E-value=1e+02 Score=20.17 Aligned_cols=32 Identities=9% Similarity=-0.052 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
....|..++.+..++++.++.....|+.++..
T Consensus 83 ~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 83 TAEEWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888888888877654
No 45
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.99 E-value=97 Score=19.51 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
+|..+-..|..+++.++.++..|...+.
T Consensus 47 ~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555544443
No 46
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.41 E-value=1.1e+02 Score=20.42 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEE 98 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~ 98 (116)
+..|..++..|..+++.-
T Consensus 42 v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555443
No 47
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=31.33 E-value=11 Score=18.67 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=8.7
Q ss_pred CCcccccccccc
Q 040485 21 DDRLITFSKRRS 32 (116)
Q Consensus 21 ~~R~~tf~KR~~ 32 (116)
+.|++.|.+|++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 567778888764
No 48
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.00 E-value=80 Score=18.29 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
+..|..++..|..+...++.+...|..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.50 E-value=1.1e+02 Score=19.21 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKE 100 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~ 100 (116)
+..|..+++.|+++...+..
T Consensus 22 I~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 50
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=28.71 E-value=14 Score=27.97 Aligned_cols=28 Identities=11% Similarity=0.225 Sum_probs=23.8
Q ss_pred hhhhhcccceEEEeeeCCCCceeeecCC
Q 040485 40 EFVTLTSSAIAIVVFSQSGKPYIFLHND 67 (116)
Q Consensus 40 ELs~Lc~~~v~~vv~s~~g~~~~~~s~s 67 (116)
+|.-.+|++|+|||+++.|++|..+.+.
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~~ 165 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVVG 165 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCcc
Confidence 4557789999999999999998888863
No 51
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.53 E-value=79 Score=17.05 Aligned_cols=23 Identities=22% Similarity=0.214 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQE 102 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~ 102 (116)
+..+...++..|+++++.++++.
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555443
No 52
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.51 E-value=73 Score=16.69 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
.|....+.|..+...++.+...|+..
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455555555555565555555544
No 53
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=27.09 E-value=88 Score=19.44 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~ 107 (116)
...|..++.+|.+++..++.+|.-|+.
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655543
No 54
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.93 E-value=95 Score=17.82 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
.+..|...+..|..+...+..+...|..++.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666655544
No 55
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.32 E-value=31 Score=21.45 Aligned_cols=21 Identities=29% Similarity=0.350 Sum_probs=16.6
Q ss_pred hhhhhhhhhhcccceEEEeee
Q 040485 35 YKKASEFVTLTSSAIAIVVFS 55 (116)
Q Consensus 35 ~KKa~ELs~Lc~~~v~~vv~s 55 (116)
.++|.|.+.+++=|.|++.|.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~ 36 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ 36 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH
Confidence 478889999888888777665
No 56
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.26 E-value=77 Score=19.14 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
+..|..++..|......+..++..|+..
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444444444444444444444433
No 57
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.96 E-value=1.1e+02 Score=20.25 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
+..|+.++....+.|.......++|+++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~e 53 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEE 53 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 58
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.79 E-value=1.3e+02 Score=18.97 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 040485 91 LLRQLDEEKEQEKM 104 (116)
Q Consensus 91 L~~ql~~~k~~~~k 104 (116)
|+++|+..+...++
T Consensus 63 le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 63 LQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 59
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.78 E-value=1.2e+02 Score=18.76 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEK 103 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~ 103 (116)
.|.++++.|+.++..+.-.++
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 344444444444444333333
No 60
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.55 E-value=63 Score=18.33 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040485 89 NDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 89 ~~L~~ql~~~k~~~~kL~~~ 108 (116)
+.|.++++.++..+..|+..
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 61
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=25.54 E-value=1.2e+02 Score=18.36 Aligned_cols=33 Identities=6% Similarity=0.142 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
...+..+...+.++++.++.....|.......+
T Consensus 41 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 41 KGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888888888888888888887776554
No 62
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.02 E-value=1e+02 Score=17.57 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
+..|..++..|..+...+..+...|+.++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 63
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=24.86 E-value=1e+02 Score=17.53 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 85 NQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 85 ~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
....++|...+.+.++.+++|++.
T Consensus 13 Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345667777777777777777664
No 64
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=24.55 E-value=72 Score=15.60 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040485 84 LNQQHNDLLRQLDEEKEQEKML 105 (116)
Q Consensus 84 l~~~~~~L~~ql~~~k~~~~kL 105 (116)
+..+..+|..++..++++.+.|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4556666777777776666554
No 65
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.05 E-value=83 Score=16.12 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 85 NQQHNDLLRQLDEEKEQEKMLKQM 108 (116)
Q Consensus 85 ~~~~~~L~~ql~~~k~~~~kL~~~ 108 (116)
..++-.|+.-+.+++++.+.|++.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555543
No 66
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.04 E-value=1.6e+02 Score=19.31 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 80 RINELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 80 ~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
.+.+++..+..|+.+++.++..+..|+..+.+
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35566666666666666666666666655543
No 67
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.97 E-value=1.5e+02 Score=23.53 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVKETQ 115 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~~~ 115 (116)
...|..+.+.+++++..++++...++++++..+..
T Consensus 58 ~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~ 92 (428)
T 4b4t_K 58 YELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSV 92 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34455556667777777777777777777665543
No 68
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.72 E-value=93 Score=16.58 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
..|....+.|..+...++.+...|+..+.+++
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 44555666666666666666666666665543
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.68 E-value=1.7e+02 Score=20.37 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
.++.++..|+-++..++.++.+|++++
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555554444
No 70
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.62 E-value=93 Score=16.57 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
+..|....++|..+...++.+...|+..+-++
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 34555566666666666666666666665443
No 71
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=22.65 E-value=18 Score=23.53 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 83 ELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 83 ~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
.|+.|+++|..++...+.+|+.|++..+
T Consensus 47 ~LQrQv~qLt~~lQ~~~~Ene~Lke~qK 74 (95)
T 3n7n_E 47 FLQRQIAQLNKQLQLSFQENEKLLSVQK 74 (95)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888887655
No 72
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.43 E-value=1.3e+02 Score=17.86 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
+.++.|..--..|.+++..++++..+|+.++-
T Consensus 27 AkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 27 AKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 34555555556677777777777777766553
No 73
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.40 E-value=1.6e+02 Score=18.96 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 78 HARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 78 ~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
..++..+...+..+.+++..++.+...+.+.+++.
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666666666665554
No 74
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.31 E-value=1.8e+02 Score=19.37 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
.++..+..++..+...+..++.+...+...+++.
T Consensus 105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555443
No 75
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=22.00 E-value=41 Score=23.68 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=21.2
Q ss_pred hhhhhcccce----EEEeeeCCCCceeeecC
Q 040485 40 EFVTLTSSAI----AIVVFSQSGKPYIFLHN 66 (116)
Q Consensus 40 ELs~Lc~~~v----~~vv~s~~g~~~~~~s~ 66 (116)
|+|..||..| +.+.+-.+|+.|.|++.
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcss 34 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIFRFQNS 34 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEEEESSH
T ss_pred eEecCcCCcccCCCCeEEEecCCCEEEEEcH
Confidence 5677888877 56666678999999987
No 76
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.84 E-value=1.5e+02 Score=18.23 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 82 NELNQQHNDLLRQLDEEKEQEKMLKQMRRV 111 (116)
Q Consensus 82 ~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~ 111 (116)
..+++++..+..++..++.+..++.....+
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e~~~~~~E 40 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444433
No 77
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.82 E-value=1.1e+02 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRRVK 112 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~ 112 (116)
...+..+..+|.+++..++.++..|+++++..
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555555555555555543
No 78
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=21.74 E-value=40 Score=23.79 Aligned_cols=27 Identities=15% Similarity=0.344 Sum_probs=21.0
Q ss_pred hhhhhcccce----EEEeeeCCCCceeeecC
Q 040485 40 EFVTLTSSAI----AIVVFSQSGKPYIFLHN 66 (116)
Q Consensus 40 ELs~Lc~~~v----~~vv~s~~g~~~~~~s~ 66 (116)
|+|..||..| +.+.+-.+|+.|.|++.
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcss 36 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTK 36 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCH
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcH
Confidence 5677888877 46666678899999987
No 79
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=21.51 E-value=1.1e+02 Score=16.40 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=24.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 78 HARINELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 78 ~~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
...++.|+..+..--+.+..++.+|..|+..++
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777776667778888888888877654
No 80
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.31 E-value=1.6e+02 Score=19.32 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
+.+++..+..|+.+++.++..+..|+..+
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455555555555555555555544443
No 81
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.19 E-value=1.6e+02 Score=18.35 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040485 79 ARINELNQQHNDLLRQLDEEKEQEKMLKQMRRVKE 113 (116)
Q Consensus 79 ~~~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r~~~ 113 (116)
.....+...+..|..+++.++++..+++..+.+..
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777776653
No 82
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.92 E-value=1.7e+02 Score=18.62 Aligned_cols=30 Identities=33% Similarity=0.472 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 81 INELNQQHNDLLRQLDEEKEQEKMLKQMRR 110 (116)
Q Consensus 81 ~~~l~~~~~~L~~ql~~~k~~~~kL~~~~r 110 (116)
...|...+..|+.+|+++...-+-|..+..
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~ 46 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKD 46 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444444433
No 83
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.62 E-value=1.9e+02 Score=18.91 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040485 87 QHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 87 ~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
++..|..+++.+..+|..|..++
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444
No 84
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.12 E-value=1.9e+02 Score=20.85 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040485 85 NQQHNDLLRQLDEEKEQEKMLKQMR 109 (116)
Q Consensus 85 ~~~~~~L~~ql~~~k~~~~kL~~~~ 109 (116)
+++++....+++.+++++..++...
T Consensus 33 ~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 33 SEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333344444444444443333
No 85
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.03 E-value=74 Score=19.16 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040485 88 HNDLLRQLDEEKEQEKMLKQ 107 (116)
Q Consensus 88 ~~~L~~ql~~~k~~~~kL~~ 107 (116)
+..|+.+++.++.+++.|++
T Consensus 59 I~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555544
Done!