Query 040486
Match_columns 460
No_of_seqs 132 out of 1240
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.8E-68 6.1E-73 518.8 45.6 442 13-460 6-451 (451)
2 PLN02555 limonoid glucosyltran 100.0 6.9E-65 1.5E-69 496.6 43.4 436 13-459 6-469 (480)
3 PLN02562 UDP-glycosyltransfera 100.0 2.7E-64 5.8E-69 492.5 42.0 427 13-458 5-448 (448)
4 PLN02173 UDP-glucosyl transfer 100.0 3.6E-64 7.8E-69 487.6 42.6 422 12-458 3-447 (449)
5 PLN02992 coniferyl-alcohol glu 100.0 2.6E-64 5.7E-69 491.1 41.6 431 13-460 4-470 (481)
6 PLN02448 UDP-glycosyltransfera 100.0 5.2E-64 1.1E-68 494.4 42.2 431 10-459 6-457 (459)
7 PLN02670 transferase, transfer 100.0 3.6E-64 7.7E-69 489.8 39.7 434 10-459 2-465 (472)
8 PLN02207 UDP-glycosyltransfera 100.0 3.2E-63 7E-68 482.6 43.2 440 13-459 2-465 (468)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.8E-63 3.9E-68 488.4 41.5 438 10-459 5-471 (477)
10 PLN02210 UDP-glucosyl transfer 100.0 5.4E-63 1.2E-67 483.7 41.5 426 11-458 5-454 (456)
11 PLN00164 glucosyltransferase; 100.0 2E-62 4.3E-67 482.8 42.9 435 13-459 2-473 (480)
12 PLN02554 UDP-glycosyltransfera 100.0 1.6E-62 3.5E-67 485.4 42.4 435 14-459 2-478 (481)
13 PLN02152 indole-3-acetate beta 100.0 1.8E-62 3.9E-67 476.5 41.6 427 13-458 2-455 (455)
14 PLN03004 UDP-glycosyltransfera 100.0 1E-62 2.3E-67 477.6 38.7 426 13-448 2-450 (451)
15 PLN03015 UDP-glucosyl transfer 100.0 3.3E-62 7.2E-67 473.5 42.0 434 12-458 1-467 (470)
16 PLN02534 UDP-glycosyltransfera 100.0 2.8E-62 6E-67 478.8 41.3 439 10-459 4-486 (491)
17 PLN02208 glycosyltransferase f 100.0 3.4E-62 7.4E-67 474.9 40.5 419 13-460 3-440 (442)
18 PLN03007 UDP-glucosyltransfera 100.0 7.4E-62 1.6E-66 481.4 42.3 435 13-459 4-480 (482)
19 PLN02764 glycosyltransferase f 100.0 5.7E-62 1.2E-66 470.5 40.1 415 13-459 4-445 (453)
20 PLN02167 UDP-glycosyltransfera 100.0 4E-61 8.8E-66 474.7 41.9 442 12-459 1-472 (475)
21 PLN00414 glycosyltransferase f 100.0 4.6E-61 1E-65 467.5 40.2 418 12-459 2-440 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.3E-51 7.1E-56 405.9 25.9 406 13-453 19-461 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.7E-53 3.7E-58 430.1 -12.1 384 16-438 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.7E-44 3.7E-49 353.3 28.2 378 20-458 1-391 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.1E-44 4.5E-49 354.4 24.1 374 15-453 1-398 (401)
26 COG1819 Glycosyl transferases, 100.0 1.1E-43 2.4E-48 343.0 18.0 389 14-458 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.6E-40 5.6E-45 334.2 24.3 393 14-438 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 3.6E-26 7.9E-31 218.4 26.3 310 14-419 1-325 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 4.1E-26 8.9E-31 217.4 21.5 305 15-416 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1.4E-22 3.1E-27 191.1 24.2 310 15-419 1-324 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 7E-23 1.5E-27 194.6 21.6 307 16-426 1-318 (321)
32 PRK00726 murG undecaprenyldiph 99.9 7.3E-20 1.6E-24 177.2 27.6 344 14-459 1-357 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 9.9E-18 2.2E-22 162.0 25.9 319 16-430 1-332 (350)
34 TIGR01133 murG undecaprenyldip 99.8 1.8E-16 3.9E-21 153.1 27.3 312 15-428 1-327 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.8 2.8E-17 6E-22 159.6 20.2 350 15-455 6-384 (385)
36 COG4671 Predicted glycosyl tra 99.7 1.7E-15 3.6E-20 136.4 20.7 331 12-418 7-364 (400)
37 PRK00025 lpxB lipid-A-disaccha 99.7 2.7E-15 5.9E-20 146.6 20.3 107 344-458 256-376 (380)
38 PRK13609 diacylglycerol glucos 99.6 1.2E-14 2.6E-19 141.9 19.2 163 272-457 201-369 (380)
39 TIGR03590 PseG pseudaminic aci 99.6 3.4E-14 7.4E-19 131.6 17.5 104 273-389 170-278 (279)
40 PF04101 Glyco_tran_28_C: Glyc 99.6 6.7E-17 1.5E-21 138.5 -4.6 135 275-419 1-144 (167)
41 PRK13608 diacylglycerol glucos 99.6 3.3E-13 7.1E-18 131.9 19.9 165 271-458 200-370 (391)
42 TIGR03492 conserved hypothetic 99.5 1E-11 2.3E-16 120.8 25.8 351 23-456 5-395 (396)
43 PLN02605 monogalactosyldiacylg 99.5 2E-11 4.2E-16 119.2 24.0 164 271-457 204-379 (382)
44 cd03814 GT1_like_2 This family 99.4 3.1E-10 6.6E-15 109.7 29.9 111 332-457 246-363 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.4 1.4E-09 3E-14 109.1 32.2 125 275-419 264-400 (465)
46 PF03033 Glyco_transf_28: Glyc 99.3 1E-13 2.2E-18 115.0 -1.2 126 17-146 1-131 (139)
47 cd04962 GT1_like_5 This family 99.3 1.6E-09 3.5E-14 105.4 27.3 114 333-460 253-371 (371)
48 cd03818 GT1_ExpC_like This fam 99.3 3.3E-09 7.1E-14 104.3 29.4 79 333-419 281-366 (396)
49 cd03794 GT1_wbuB_like This fam 99.3 2.6E-09 5.7E-14 104.0 26.4 333 16-419 1-365 (394)
50 PRK10307 putative glycosyl tra 99.3 1.2E-08 2.7E-13 100.8 30.5 162 274-459 229-407 (412)
51 cd03823 GT1_ExpE7_like This fa 99.3 7.3E-09 1.6E-13 99.8 27.8 130 272-419 189-329 (359)
52 cd03800 GT1_Sucrose_synthase T 99.2 1.3E-08 2.8E-13 100.0 28.3 79 333-419 283-368 (398)
53 cd03817 GT1_UGDG_like This fam 99.2 3.4E-08 7.4E-13 95.6 30.2 78 333-419 259-343 (374)
54 cd03816 GT1_ALG1_like This fam 99.2 1.5E-08 3.3E-13 100.0 27.9 90 334-433 295-399 (415)
55 COG3980 spsG Spore coat polysa 99.2 1.2E-09 2.7E-14 96.0 17.3 147 273-436 158-307 (318)
56 cd03825 GT1_wcfI_like This fam 99.2 1.9E-08 4.1E-13 97.5 27.5 114 333-460 244-365 (365)
57 cd03808 GT1_cap1E_like This fa 99.2 8.4E-08 1.8E-12 92.1 29.9 314 16-419 1-329 (359)
58 cd03801 GT1_YqgM_like This fam 99.1 9.2E-08 2E-12 92.1 29.0 111 332-457 255-373 (374)
59 cd03820 GT1_amsD_like This fam 99.1 2.2E-07 4.8E-12 88.7 29.9 89 334-433 236-330 (348)
60 TIGR03449 mycothiol_MshA UDP-N 99.1 1.2E-07 2.7E-12 93.5 28.6 111 333-458 283-400 (405)
61 cd03796 GT1_PIG-A_like This fa 99.1 7.4E-08 1.6E-12 94.8 26.7 111 333-459 250-367 (398)
62 TIGR02472 sucr_P_syn_N sucrose 99.1 1.3E-07 2.7E-12 94.2 27.5 112 332-457 316-438 (439)
63 cd03805 GT1_ALG2_like This fam 99.1 2.5E-07 5.4E-12 90.8 29.1 79 332-419 279-364 (392)
64 cd03798 GT1_wlbH_like This fam 99.0 6.6E-07 1.4E-11 86.3 30.2 111 333-459 259-376 (377)
65 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 3.3E-09 7.2E-14 103.0 14.0 134 272-419 197-337 (363)
66 TIGR02468 sucrsPsyn_pln sucros 99.0 1E-06 2.2E-11 93.2 31.8 367 12-419 167-637 (1050)
67 TIGR00236 wecB UDP-N-acetylglu 99.0 2.7E-08 5.8E-13 96.7 18.8 158 273-456 197-364 (365)
68 cd03821 GT1_Bme6_like This fam 99.0 1.4E-06 3.1E-11 84.2 30.0 77 333-419 262-345 (375)
69 PF04007 DUF354: Protein of un 99.0 1E-07 2.2E-12 89.6 20.4 300 15-417 1-308 (335)
70 PRK05749 3-deoxy-D-manno-octul 99.0 1.3E-07 2.8E-12 93.9 22.5 70 344-419 314-388 (425)
71 cd03822 GT1_ecORF704_like This 99.0 7.9E-07 1.7E-11 86.0 27.2 109 333-457 247-365 (366)
72 cd03795 GT1_like_4 This family 99.0 5E-07 1.1E-11 87.2 25.6 128 274-419 191-332 (357)
73 cd03819 GT1_WavL_like This fam 98.9 6.6E-07 1.4E-11 86.4 24.6 95 333-433 246-346 (355)
74 cd05844 GT1_like_7 Glycosyltra 98.9 1.8E-06 3.9E-11 83.8 27.6 80 332-419 244-336 (367)
75 cd03802 GT1_AviGT4_like This f 98.9 4.3E-07 9.4E-12 86.9 22.2 154 276-457 173-334 (335)
76 PRK09922 UDP-D-galactose:(gluc 98.8 6.5E-07 1.4E-11 86.8 21.9 135 274-420 180-325 (359)
77 cd03799 GT1_amsK_like This is 98.8 4.5E-06 9.9E-11 80.4 27.3 80 332-419 235-327 (355)
78 PRK14089 ipid-A-disaccharide s 98.8 2.1E-07 4.5E-12 88.2 16.8 159 273-455 167-346 (347)
79 TIGR02149 glgA_Coryne glycogen 98.8 3E-06 6.6E-11 83.0 25.4 164 275-459 202-386 (388)
80 TIGR02470 sucr_synth sucrose s 98.8 3.6E-05 7.8E-10 79.9 32.7 77 333-417 619-707 (784)
81 cd03807 GT1_WbnK_like This fam 98.8 1.1E-05 2.4E-10 77.5 27.9 108 334-457 252-364 (365)
82 cd04955 GT1_like_6 This family 98.8 1.5E-05 3.3E-10 77.1 28.8 155 277-457 196-362 (363)
83 PRK15427 colanic acid biosynth 98.8 1.9E-05 4E-10 77.8 29.2 114 333-460 279-406 (406)
84 cd04951 GT1_WbdM_like This fam 98.8 7.3E-06 1.6E-10 79.2 25.9 110 333-458 245-359 (360)
85 PLN02275 transferase, transfer 98.7 7.8E-06 1.7E-10 79.6 25.6 74 334-417 287-371 (371)
86 PLN02846 digalactosyldiacylgly 98.7 6.3E-06 1.4E-10 81.0 23.6 72 337-419 288-363 (462)
87 cd03811 GT1_WabH_like This fam 98.7 3.6E-06 7.9E-11 80.4 21.6 79 333-419 246-332 (353)
88 TIGR03088 stp2 sugar transfera 98.7 1.1E-05 2.4E-10 78.6 24.3 112 334-459 256-372 (374)
89 PLN00142 sucrose synthase 98.7 8E-06 1.7E-10 84.8 23.7 71 341-419 654-736 (815)
90 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 1.1E-05 2.5E-10 77.9 21.5 130 272-418 200-338 (365)
91 KOG3349 Predicted glycosyltran 98.6 2.5E-07 5.4E-12 73.5 7.6 120 273-402 3-134 (170)
92 TIGR03087 stp1 sugar transfera 98.6 2.5E-05 5.4E-10 76.8 23.3 110 333-458 280-395 (397)
93 cd03809 GT1_mtfB_like This fam 98.5 3.5E-05 7.6E-10 74.3 23.3 91 331-434 251-348 (365)
94 COG1519 KdtA 3-deoxy-D-manno-o 98.5 3.4E-05 7.3E-10 73.0 21.5 319 18-437 52-405 (419)
95 PRK15179 Vi polysaccharide bio 98.5 0.00017 3.6E-09 74.9 28.3 112 333-458 574-692 (694)
96 cd03792 GT1_Trehalose_phosphor 98.5 5.8E-05 1.3E-09 73.6 24.0 111 333-459 252-371 (372)
97 cd03812 GT1_CapH_like This fam 98.5 5E-05 1.1E-09 73.3 22.5 83 333-427 249-336 (358)
98 cd03804 GT1_wbaZ_like This fam 98.5 2.4E-05 5.1E-10 75.6 19.9 125 277-419 198-326 (351)
99 PRK01021 lpxB lipid-A-disaccha 98.4 4.9E-05 1.1E-09 76.0 21.1 345 14-456 226-602 (608)
100 TIGR02095 glgA glycogen/starch 98.4 0.00011 2.3E-09 74.2 23.0 112 331-459 344-472 (473)
101 COG0763 LpxB Lipid A disacchar 98.4 2E-05 4.4E-10 73.6 16.0 350 14-458 1-380 (381)
102 PRK00654 glgA glycogen synthas 98.4 9.5E-05 2E-09 74.3 22.2 165 275-459 283-462 (466)
103 COG0381 WecB UDP-N-acetylgluco 98.3 3.7E-05 8E-10 72.1 17.0 160 271-456 202-371 (383)
104 cd03806 GT1_ALG11_like This fa 98.3 0.00014 2.9E-09 72.0 21.6 79 332-419 304-392 (419)
105 PLN02949 transferase, transfer 98.3 0.0001 2.3E-09 73.3 19.9 112 332-459 334-456 (463)
106 PRK10125 putative glycosyl tra 98.3 0.00066 1.4E-08 66.7 25.1 152 277-459 244-404 (405)
107 PLN02316 synthase/transferase 98.2 0.00097 2.1E-08 71.4 27.2 118 333-459 900-1033(1036)
108 PF02684 LpxB: Lipid-A-disacch 98.2 0.00019 4.2E-09 68.6 20.1 194 233-448 149-366 (373)
109 cd03791 GT1_Glycogen_synthase_ 98.1 0.0003 6.5E-09 71.0 20.3 117 332-458 350-475 (476)
110 PF02350 Epimerase_2: UDP-N-ac 98.1 6.1E-05 1.3E-09 72.1 13.2 139 271-431 178-327 (346)
111 TIGR02918 accessory Sec system 98.1 0.001 2.2E-08 67.1 22.1 113 333-459 376-499 (500)
112 cd03813 GT1_like_3 This family 98.0 0.0012 2.7E-08 66.5 22.4 111 333-456 354-473 (475)
113 PF13844 Glyco_transf_41: Glyc 98.0 7.5E-05 1.6E-09 72.9 12.6 172 271-460 282-467 (468)
114 PRK15484 lipopolysaccharide 1, 98.0 0.00033 7.1E-09 68.4 16.3 115 331-459 255-377 (380)
115 cd04950 GT1_like_1 Glycosyltra 97.9 0.0068 1.5E-07 59.1 24.8 107 333-458 254-370 (373)
116 cd04946 GT1_AmsK_like This fam 97.9 0.00032 6.9E-09 69.2 14.4 165 273-454 229-406 (407)
117 COG5017 Uncharacterized conser 97.9 9.4E-05 2E-09 57.9 8.1 124 276-418 2-141 (161)
118 PRK15490 Vi polysaccharide bio 97.8 0.025 5.4E-07 56.8 25.6 112 333-458 455-574 (578)
119 cd04949 GT1_gtfA_like This fam 97.6 0.0099 2.1E-07 57.8 20.6 99 333-436 261-363 (372)
120 PLN02501 digalactosyldiacylgly 97.6 0.026 5.7E-07 57.7 22.7 74 335-419 603-681 (794)
121 PRK10017 colanic acid biosynth 97.5 0.11 2.5E-06 51.0 28.9 163 265-437 226-408 (426)
122 PF00534 Glycos_transf_1: Glyc 97.5 0.001 2.2E-08 56.9 10.2 80 332-419 72-158 (172)
123 cd01635 Glycosyltransferase_GT 97.4 0.014 3.1E-07 51.7 17.5 48 333-382 161-216 (229)
124 PRK09814 beta-1,6-galactofuran 97.4 0.00087 1.9E-08 64.2 9.8 110 333-456 207-332 (333)
125 COG1817 Uncharacterized protei 97.3 0.061 1.3E-06 49.1 19.3 112 15-146 1-114 (346)
126 PF06722 DUF1205: Protein of u 97.2 0.00058 1.3E-08 51.7 4.9 65 260-327 27-96 (97)
127 PF13692 Glyco_trans_1_4: Glyc 97.1 0.0011 2.5E-08 54.0 6.0 80 332-419 52-135 (135)
128 TIGR02193 heptsyl_trn_I lipopo 97.0 0.057 1.2E-06 51.3 17.9 54 16-69 1-57 (319)
129 PF13477 Glyco_trans_4_2: Glyc 96.6 0.027 5.8E-07 46.0 10.5 103 16-144 1-107 (139)
130 TIGR02201 heptsyl_trn_III lipo 96.6 0.26 5.5E-06 47.4 18.4 105 16-141 1-108 (344)
131 COG3914 Spy Predicted O-linked 96.5 0.057 1.2E-06 53.4 13.3 137 271-419 427-577 (620)
132 PRK10422 lipopolysaccharide co 96.5 0.41 9E-06 46.1 19.1 107 13-141 4-113 (352)
133 PHA01633 putative glycosyl tra 96.4 0.016 3.6E-07 54.8 8.8 100 333-436 201-324 (335)
134 cd03789 GT1_LPS_heptosyltransf 96.4 0.12 2.5E-06 48.1 14.5 102 16-141 1-105 (279)
135 PRK10916 ADP-heptose:LPS hepto 96.3 0.2 4.3E-06 48.3 16.0 103 15-141 1-106 (348)
136 KOG4626 O-linked N-acetylgluco 96.3 0.044 9.6E-07 54.4 10.9 151 271-439 756-918 (966)
137 PRK14098 glycogen synthase; Pr 96.3 0.041 8.9E-07 55.5 11.3 115 330-459 359-485 (489)
138 COG0859 RfaF ADP-heptose:LPS h 96.1 0.32 6.9E-06 46.5 16.2 106 14-142 1-108 (334)
139 PHA01630 putative group 1 glyc 96.0 0.26 5.7E-06 47.0 14.7 113 339-459 196-330 (331)
140 PF12000 Glyco_trans_4_3: Gkyc 95.9 0.074 1.6E-06 44.9 9.3 92 40-144 1-96 (171)
141 PF13524 Glyco_trans_1_2: Glyc 95.9 0.091 2E-06 39.4 9.1 82 358-455 9-92 (92)
142 PF01975 SurE: Survival protei 95.9 0.11 2.3E-06 45.3 10.4 113 15-145 1-134 (196)
143 PF06258 Mito_fiss_Elm1: Mitoc 95.7 0.68 1.5E-05 43.6 16.0 58 342-402 221-282 (311)
144 PF13579 Glyco_trans_4_4: Glyc 95.7 0.019 4.1E-07 47.8 5.1 96 30-144 6-104 (160)
145 PRK13932 stationary phase surv 95.4 0.52 1.1E-05 42.7 13.4 115 11-145 2-134 (257)
146 TIGR02195 heptsyl_trn_II lipop 95.2 1 2.2E-05 43.0 15.7 102 16-141 1-105 (334)
147 PRK10964 ADP-heptose:LPS hepto 95.0 0.71 1.5E-05 43.9 13.9 50 15-64 1-52 (322)
148 PLN02939 transferase, transfer 93.9 1.4 3.1E-05 47.3 14.0 113 333-458 837-965 (977)
149 TIGR00087 surE 5'/3'-nucleotid 93.6 1.9 4.1E-05 38.9 12.5 110 15-145 1-129 (244)
150 PRK13933 stationary phase surv 93.4 2.2 4.9E-05 38.6 12.8 111 15-145 1-130 (253)
151 PF13439 Glyco_transf_4: Glyco 93.2 0.65 1.4E-05 39.1 9.0 33 24-56 11-43 (177)
152 COG4370 Uncharacterized protei 93.0 7.2 0.00016 35.9 17.4 85 339-431 301-388 (412)
153 PRK00346 surE 5'(3')-nucleotid 92.8 3 6.4E-05 37.8 12.6 108 15-145 1-125 (250)
154 PRK13934 stationary phase surv 92.8 2.9 6.3E-05 38.1 12.5 108 15-144 1-127 (266)
155 PRK13935 stationary phase surv 92.7 3.1 6.6E-05 37.7 12.5 110 15-145 1-129 (253)
156 PRK14099 glycogen synthase; Pr 92.5 1.8 3.9E-05 43.7 12.2 110 337-459 355-478 (485)
157 TIGR02400 trehalose_OtsA alpha 92.5 0.85 1.9E-05 45.6 9.7 104 339-459 342-456 (456)
158 COG0496 SurE Predicted acid ph 91.3 4.6 9.9E-05 36.4 11.8 109 15-145 1-126 (252)
159 PF08660 Alg14: Oligosaccharid 89.8 0.68 1.5E-05 39.3 5.2 110 21-145 4-130 (170)
160 COG0438 RfaG Glycosyltransfera 88.0 4.3 9.4E-05 37.9 10.1 79 333-419 257-342 (381)
161 cd03793 GT1_Glycogen_synthase_ 87.8 2.2 4.7E-05 43.4 7.9 75 342-419 467-552 (590)
162 PF02951 GSH-S_N: Prokaryotic 87.5 1 2.2E-05 35.6 4.3 37 15-51 1-40 (119)
163 PRK02797 4-alpha-L-fucosyltran 87.3 4.8 0.0001 37.3 9.1 136 276-418 147-293 (322)
164 cd03788 GT1_TPS Trehalose-6-Ph 86.2 2.4 5.1E-05 42.6 7.3 103 338-457 346-459 (460)
165 PF02441 Flavoprotein: Flavopr 85.4 1.2 2.6E-05 35.8 3.9 38 15-53 1-38 (129)
166 COG3660 Predicted nucleoside-d 84.8 30 0.00066 31.3 16.0 90 275-376 164-270 (329)
167 TIGR03713 acc_sec_asp1 accesso 84.6 2.4 5.3E-05 43.1 6.5 74 333-419 409-488 (519)
168 TIGR00715 precor6x_red precorr 83.7 12 0.00026 34.1 10.0 32 15-51 1-32 (256)
169 PRK02261 methylaspartate mutas 83.6 2.6 5.6E-05 34.3 5.1 42 12-53 1-42 (137)
170 PF02310 B12-binding: B12 bind 83.0 7 0.00015 30.7 7.4 37 15-51 1-37 (121)
171 KOG0853 Glycosyltransferase [C 82.8 2.3 4.9E-05 42.3 5.2 84 363-457 381-465 (495)
172 PF00731 AIRC: AIR carboxylase 82.0 17 0.00037 30.0 9.2 136 275-438 2-148 (150)
173 TIGR02919 accessory Sec system 81.9 4.9 0.00011 39.9 7.3 131 272-431 282-421 (438)
174 PLN03063 alpha,alpha-trehalose 81.5 6.3 0.00014 42.4 8.5 98 345-458 371-476 (797)
175 PRK13931 stationary phase surv 80.8 28 0.00061 31.8 11.1 109 15-144 1-129 (261)
176 COG1618 Predicted nucleotide k 79.2 13 0.00029 31.0 7.6 57 12-70 3-60 (179)
177 TIGR02015 BchY chlorophyllide 77.8 23 0.00049 35.1 10.5 93 15-143 286-380 (422)
178 COG2910 Putative NADH-flavin r 77.6 2.8 6.1E-05 35.6 3.4 33 15-51 1-33 (211)
179 PRK08305 spoVFB dipicolinate s 77.4 3.6 7.8E-05 35.7 4.2 40 13-52 4-43 (196)
180 cd02067 B12-binding B12 bindin 76.6 4.1 8.8E-05 32.1 4.1 36 16-51 1-36 (119)
181 PF07429 Glyco_transf_56: 4-al 76.6 16 0.00035 34.5 8.4 136 276-418 186-332 (360)
182 PF04127 DFP: DNA / pantothena 76.0 4.5 9.7E-05 34.8 4.4 35 31-68 32-66 (185)
183 PF12146 Hydrolase_4: Putative 74.1 9.4 0.0002 27.6 5.1 37 14-50 15-51 (79)
184 PF05159 Capsule_synth: Capsul 73.9 15 0.00033 33.7 7.8 41 336-379 186-226 (269)
185 PF04464 Glyphos_transf: CDP-G 73.8 4.3 9.3E-05 39.3 4.3 108 334-453 253-367 (369)
186 KOG1111 N-acetylglucosaminyltr 73.4 88 0.0019 29.9 17.3 82 287-377 209-301 (426)
187 cd01980 Chlide_reductase_Y Chl 72.8 32 0.0007 34.0 10.2 28 114-144 349-376 (416)
188 COG0003 ArsA Predicted ATPase 71.5 42 0.0009 31.8 10.0 42 14-55 1-43 (322)
189 PRK05986 cob(I)alamin adenolsy 71.4 44 0.00095 28.9 9.3 99 13-125 21-125 (191)
190 cd00561 CobA_CobO_BtuR ATP:cor 71.2 34 0.00073 28.6 8.3 97 16-126 4-106 (159)
191 PRK06732 phosphopantothenate-- 69.3 13 0.00029 33.3 6.0 31 19-51 19-49 (229)
192 PRK14099 glycogen synthase; Pr 69.2 8.7 0.00019 38.9 5.4 40 12-53 1-48 (485)
193 COG2861 Uncharacterized protei 69.1 32 0.0007 30.6 8.0 110 14-141 54-178 (250)
194 TIGR02852 spore_dpaB dipicolin 68.5 7 0.00015 33.6 3.8 38 15-52 1-38 (187)
195 cd01974 Nitrogenase_MoFe_beta 68.3 58 0.0013 32.4 10.9 27 114-143 376-402 (435)
196 PRK07313 phosphopantothenoylcy 68.3 7.4 0.00016 33.4 4.0 39 14-53 1-39 (182)
197 TIGR00708 cobA cob(I)alamin ad 68.2 33 0.00072 29.1 7.8 97 14-125 5-107 (173)
198 PRK05920 aromatic acid decarbo 67.4 8.1 0.00018 33.8 4.1 38 14-52 3-40 (204)
199 PRK06029 3-octaprenyl-4-hydrox 67.0 8.3 0.00018 33.2 4.0 38 14-52 1-39 (185)
200 PRK09620 hypothetical protein; 66.9 30 0.00065 31.0 7.7 38 14-51 3-52 (229)
201 PRK13982 bifunctional SbtC-lik 66.1 16 0.00035 36.5 6.3 53 13-68 255-319 (475)
202 PRK14501 putative bifunctional 62.8 20 0.00044 38.4 6.9 109 338-459 347-462 (726)
203 cd01965 Nitrogenase_MoFe_beta_ 62.5 32 0.00069 34.2 7.8 99 14-144 299-397 (428)
204 COG2185 Sbm Methylmalonyl-CoA 61.0 15 0.00033 29.9 4.2 39 12-50 10-48 (143)
205 smart00851 MGS MGS-like domain 60.9 31 0.00067 25.5 5.7 79 31-140 2-89 (90)
206 KOG0780 Signal recognition par 59.8 21 0.00045 34.3 5.4 43 14-56 101-143 (483)
207 cd00550 ArsA_ATPase Oxyanion-t 59.2 42 0.00092 30.5 7.4 36 18-53 4-39 (254)
208 PF01210 NAD_Gly3P_dh_N: NAD-d 59.2 7.6 0.00017 32.4 2.4 31 16-51 1-31 (157)
209 PF02142 MGS: MGS-like domain 58.8 5.7 0.00012 29.9 1.4 84 31-140 2-94 (95)
210 PRK14098 glycogen synthase; Pr 57.6 22 0.00047 36.1 5.7 39 13-53 4-50 (489)
211 PRK04885 ppnK inorganic polyph 57.1 15 0.00032 33.8 4.0 28 349-378 35-68 (265)
212 PRK06718 precorrin-2 dehydroge 56.7 59 0.0013 28.4 7.6 146 266-438 5-164 (202)
213 PRK01175 phosphoribosylformylg 56.2 1.4E+02 0.003 27.4 10.1 58 13-73 2-59 (261)
214 COG4394 Uncharacterized protei 56.1 1.5E+02 0.0032 27.4 9.8 48 336-388 241-291 (370)
215 PRK06249 2-dehydropantoate 2-r 56.0 15 0.00033 34.6 4.1 49 12-67 3-51 (313)
216 PF09314 DUF1972: Domain of un 55.8 24 0.00052 30.3 4.9 56 14-69 1-62 (185)
217 PRK08057 cobalt-precorrin-6x r 55.8 97 0.0021 28.1 9.0 33 14-51 2-34 (248)
218 PRK06849 hypothetical protein; 55.5 24 0.00052 34.5 5.5 35 13-51 3-37 (389)
219 PRK02155 ppnK NAD(+)/NADH kina 54.9 20 0.00044 33.4 4.6 55 347-419 61-119 (291)
220 TIGR01470 cysG_Nterm siroheme 54.1 1E+02 0.0023 26.9 8.8 143 272-437 9-163 (205)
221 TIGR00421 ubiX_pad polyprenyl 53.5 15 0.00032 31.6 3.2 36 16-52 1-36 (181)
222 PRK11199 tyrA bifunctional cho 53.4 55 0.0012 31.8 7.6 34 13-51 97-131 (374)
223 PF04413 Glycos_transf_N: 3-De 53.3 11 0.00025 32.4 2.6 99 16-145 22-127 (186)
224 PRK00207 sulfur transfer compl 53.0 34 0.00074 27.4 5.1 37 15-51 1-41 (128)
225 TIGR01285 nifN nitrogenase mol 53.0 86 0.0019 31.2 9.0 88 14-143 311-398 (432)
226 PF01075 Glyco_transf_9: Glyco 52.7 29 0.00062 31.2 5.3 99 271-377 103-208 (247)
227 TIGR02370 pyl_corrinoid methyl 52.7 30 0.00066 30.1 5.1 42 12-53 82-123 (197)
228 cd02070 corrinoid_protein_B12- 52.6 28 0.00062 30.4 5.0 39 13-51 81-119 (201)
229 PRK05632 phosphate acetyltrans 51.9 2.1E+02 0.0045 30.5 12.1 102 16-146 4-116 (684)
230 KOG3062 RNA polymerase II elon 51.8 1.1E+02 0.0024 27.3 8.1 36 15-50 2-38 (281)
231 PRK14077 pnk inorganic polypho 51.4 22 0.00048 33.0 4.3 56 345-419 60-120 (287)
232 PRK01077 cobyrinic acid a,c-di 51.1 84 0.0018 31.4 8.7 36 15-50 4-40 (451)
233 PLN02470 acetolactate synthase 51.0 46 0.00099 34.6 7.0 93 279-379 2-110 (585)
234 PLN02948 phosphoribosylaminoim 50.6 2.4E+02 0.0051 29.4 12.0 37 12-53 20-56 (577)
235 COG2085 Predicted dinucleotide 50.5 25 0.00054 30.8 4.1 33 14-51 1-33 (211)
236 PF02571 CbiJ: Precorrin-6x re 50.2 64 0.0014 29.3 6.9 36 15-56 1-37 (249)
237 cd01425 RPS2 Ribosomal protein 50.2 48 0.001 28.8 5.9 32 114-145 126-159 (193)
238 COG2894 MinD Septum formation 49.9 31 0.00067 30.5 4.5 42 14-55 1-44 (272)
239 cd02071 MM_CoA_mut_B12_BD meth 49.9 28 0.00061 27.5 4.1 36 16-51 1-36 (122)
240 TIGR03029 EpsG chain length de 49.8 2E+02 0.0044 26.3 10.5 39 13-51 101-141 (274)
241 PRK13789 phosphoribosylamine-- 49.7 51 0.0011 32.7 6.8 34 13-51 3-36 (426)
242 cd02037 MRP-like MRP (Multiple 49.6 82 0.0018 26.3 7.3 32 21-52 7-38 (169)
243 PRK01911 ppnK inorganic polyph 49.6 25 0.00054 32.8 4.3 56 345-419 60-120 (292)
244 CHL00072 chlL photochlorophyll 49.1 32 0.0007 32.1 5.0 38 15-52 1-38 (290)
245 PRK04539 ppnK inorganic polyph 48.4 25 0.00053 32.9 4.1 56 345-419 64-124 (296)
246 PF03446 NAD_binding_2: NAD bi 48.3 21 0.00045 30.0 3.3 32 14-50 1-32 (163)
247 PRK02649 ppnK inorganic polyph 48.0 27 0.00058 32.8 4.2 54 347-419 66-124 (305)
248 PLN02939 transferase, transfer 47.9 43 0.00094 36.6 6.2 42 12-53 479-526 (977)
249 TIGR02113 coaC_strep phosphopa 47.9 26 0.00056 29.9 3.9 36 16-52 2-37 (177)
250 PRK06522 2-dehydropantoate 2-r 47.4 23 0.00049 33.1 3.8 31 15-50 1-31 (304)
251 PRK03378 ppnK inorganic polyph 47.3 27 0.00059 32.5 4.2 56 345-419 59-119 (292)
252 KOG2941 Beta-1,4-mannosyltrans 46.9 60 0.0013 30.8 6.1 59 12-70 10-70 (444)
253 PF03808 Glyco_tran_WecB: Glyc 46.6 1.8E+02 0.0039 24.6 9.2 86 213-311 50-135 (172)
254 cd03466 Nitrogenase_NifN_2 Nit 45.8 2.1E+02 0.0045 28.4 10.4 27 114-143 371-397 (429)
255 TIGR01425 SRP54_euk signal rec 45.8 94 0.002 30.8 7.7 41 14-54 100-140 (429)
256 PRK10867 signal recognition pa 45.7 1.1E+02 0.0024 30.4 8.3 42 14-55 100-142 (433)
257 COG2109 BtuR ATP:corrinoid ade 45.6 1.3E+02 0.0028 26.0 7.5 99 14-126 28-133 (198)
258 cd01968 Nitrogenase_NifE_I Nit 44.7 2.6E+02 0.0056 27.6 10.9 33 14-51 287-319 (410)
259 COG0541 Ffh Signal recognition 44.4 88 0.0019 30.8 7.1 44 13-56 99-142 (451)
260 PF02606 LpxK: Tetraacyldisacc 44.3 1.3E+02 0.0028 28.6 8.3 39 18-56 41-79 (326)
261 PF02374 ArsA_ATPase: Anion-tr 44.0 34 0.00073 32.2 4.3 40 15-54 1-41 (305)
262 cd02032 Bchl_like This family 43.9 39 0.00085 30.9 4.8 37 15-51 1-37 (267)
263 PRK14619 NAD(P)H-dependent gly 43.8 33 0.00071 32.3 4.3 34 13-51 3-36 (308)
264 PRK09739 hypothetical protein; 43.6 59 0.0013 28.2 5.6 39 12-50 1-42 (199)
265 PF06925 MGDG_synth: Monogalac 43.6 57 0.0012 27.4 5.3 24 27-50 1-25 (169)
266 PRK06719 precorrin-2 dehydroge 43.3 36 0.00079 28.4 4.0 34 13-51 12-45 (157)
267 TIGR01281 DPOR_bchL light-inde 43.3 42 0.0009 30.7 4.8 37 15-51 1-37 (268)
268 PRK02231 ppnK inorganic polyph 42.8 25 0.00053 32.4 3.1 57 344-418 37-97 (272)
269 TIGR01283 nifE nitrogenase mol 42.8 2.3E+02 0.0051 28.4 10.4 33 14-51 326-358 (456)
270 PF08323 Glyco_transf_5: Starc 42.7 21 0.00045 32.4 2.6 23 30-52 21-43 (245)
271 COG3349 Uncharacterized conser 42.6 26 0.00057 35.0 3.4 32 15-51 1-32 (485)
272 PRK03372 ppnK inorganic polyph 42.6 31 0.00067 32.4 3.8 56 346-419 69-128 (306)
273 cd01423 MGS_CPS_I_III Methylgl 42.6 50 0.0011 25.8 4.5 92 19-141 4-106 (116)
274 PRK12921 2-dehydropantoate 2-r 41.9 30 0.00065 32.3 3.7 31 15-50 1-31 (305)
275 COG2084 MmsB 3-hydroxyisobutyr 41.5 37 0.0008 31.5 4.0 32 15-51 1-32 (286)
276 COG1797 CobB Cobyrinic acid a, 41.4 45 0.00097 32.7 4.7 32 16-47 2-34 (451)
277 PRK05579 bifunctional phosphop 41.3 38 0.00082 33.2 4.3 41 12-53 4-44 (399)
278 COG0299 PurN Folate-dependent 41.2 1.6E+02 0.0035 25.5 7.4 121 287-434 64-186 (200)
279 TIGR02700 flavo_MJ0208 archaeo 41.1 39 0.00084 30.4 4.1 40 16-55 1-42 (234)
280 COG1663 LpxK Tetraacyldisaccha 41.0 1.1E+02 0.0023 29.1 6.9 36 19-54 54-89 (336)
281 PRK04940 hypothetical protein; 40.8 66 0.0014 27.5 5.2 31 115-145 60-91 (180)
282 PRK08229 2-dehydropantoate 2-r 40.6 32 0.0007 32.8 3.8 33 14-51 2-34 (341)
283 PLN02929 NADH kinase 40.5 33 0.00071 32.1 3.5 66 348-419 63-137 (301)
284 TIGR02699 archaeo_AfpA archaeo 40.4 39 0.00084 28.8 3.7 38 16-54 1-40 (174)
285 cd02069 methionine_synthase_B1 40.4 59 0.0013 28.7 5.1 40 13-52 87-126 (213)
286 TIGR00521 coaBC_dfp phosphopan 40.2 35 0.00077 33.3 3.9 39 13-52 2-40 (390)
287 KOG3339 Predicted glycosyltran 40.2 1.7E+02 0.0036 25.2 7.2 29 13-42 37-65 (211)
288 PRK00784 cobyric acid synthase 40.1 3.3E+02 0.0072 27.6 11.0 34 17-50 5-39 (488)
289 PRK14478 nitrogenase molybdenu 39.7 2E+02 0.0044 29.0 9.4 34 13-51 323-356 (475)
290 COG0801 FolK 7,8-dihydro-6-hyd 39.6 62 0.0013 27.1 4.6 29 275-303 3-31 (160)
291 TIGR01501 MthylAspMutase methy 39.5 63 0.0014 26.1 4.6 39 14-52 1-39 (134)
292 COG1484 DnaC DNA replication p 39.5 48 0.001 30.2 4.5 39 13-51 104-142 (254)
293 PRK13768 GTPase; Provisional 39.3 87 0.0019 28.5 6.2 37 16-52 4-40 (253)
294 PF06180 CbiK: Cobalt chelatas 39.2 47 0.001 30.4 4.3 41 273-313 1-44 (262)
295 PF09001 DUF1890: Domain of un 39.1 37 0.0008 27.3 3.1 26 26-51 11-36 (139)
296 PRK01185 ppnK inorganic polyph 39.1 41 0.0009 31.0 4.0 52 349-419 52-105 (271)
297 PF01372 Melittin: Melittin; 38.2 6.4 0.00014 20.9 -0.8 17 360-376 1-17 (26)
298 PLN00016 RNA-binding protein; 38.2 40 0.00086 32.8 4.0 36 14-51 52-89 (378)
299 COG0297 GlgA Glycogen synthase 37.8 1.3E+02 0.0027 30.5 7.4 119 328-458 344-476 (487)
300 PRK11064 wecC UDP-N-acetyl-D-m 37.7 46 0.001 32.9 4.4 34 13-51 2-35 (415)
301 COG0503 Apt Adenine/guanine ph 37.3 62 0.0013 27.7 4.6 30 114-143 52-83 (179)
302 cd01141 TroA_d Periplasmic bin 37.2 52 0.0011 28.0 4.2 37 100-143 61-99 (186)
303 cd01977 Nitrogenase_VFe_alpha 37.2 1.7E+02 0.0036 29.0 8.2 26 114-142 357-382 (415)
304 PF00862 Sucrose_synth: Sucros 37.2 19 0.00042 35.8 1.6 81 114-225 400-482 (550)
305 PRK01231 ppnK inorganic polyph 37.1 54 0.0012 30.7 4.5 54 348-419 61-118 (295)
306 TIGR00347 bioD dethiobiotin sy 37.1 2.4E+02 0.0052 23.3 9.4 27 22-48 6-32 (166)
307 COG0240 GpsA Glycerol-3-phosph 36.9 52 0.0011 31.1 4.3 33 14-51 1-33 (329)
308 TIGR01162 purE phosphoribosyla 36.4 2.5E+02 0.0055 23.4 11.4 134 278-439 3-147 (156)
309 cd06533 Glyco_transf_WecG_TagA 36.4 2.6E+02 0.0057 23.5 9.7 87 212-311 47-133 (171)
310 PRK14618 NAD(P)H-dependent gly 36.3 49 0.0011 31.4 4.3 33 14-51 4-36 (328)
311 COG4088 Predicted nucleotide k 36.3 49 0.0011 29.0 3.6 37 15-51 2-38 (261)
312 PRK07206 hypothetical protein; 36.2 1.3E+02 0.0029 29.5 7.4 32 15-51 3-34 (416)
313 PRK14075 pnk inorganic polypho 36.0 50 0.0011 30.1 4.0 52 349-419 41-94 (256)
314 PRK00094 gpsA NAD(P)H-dependen 36.0 47 0.001 31.3 4.1 33 14-51 1-33 (325)
315 TIGR03026 NDP-sugDHase nucleot 35.4 51 0.0011 32.5 4.3 32 15-51 1-32 (411)
316 cd01421 IMPCH Inosine monophos 35.4 51 0.0011 28.3 3.7 44 29-75 11-56 (187)
317 PF03808 Glyco_tran_WecB: Glyc 35.4 2.3E+02 0.005 23.9 7.8 92 31-149 37-138 (172)
318 PRK13234 nifH nitrogenase redu 35.3 74 0.0016 29.7 5.2 40 13-52 2-42 (295)
319 PRK04148 hypothetical protein; 35.0 85 0.0018 25.4 4.7 34 12-51 15-48 (134)
320 cd02034 CooC The accessory pro 34.9 95 0.0021 24.3 5.0 37 16-52 1-37 (116)
321 PRK09219 xanthine phosphoribos 34.8 84 0.0018 27.2 5.0 31 114-144 49-81 (189)
322 PRK14569 D-alanyl-alanine synt 34.8 78 0.0017 29.6 5.3 39 12-50 1-43 (296)
323 PRK05854 short chain dehydroge 34.8 78 0.0017 29.8 5.3 45 2-50 2-46 (313)
324 PF03721 UDPG_MGDP_dh_N: UDP-g 34.7 62 0.0013 27.8 4.2 32 15-51 1-32 (185)
325 COG2120 Uncharacterized protei 34.7 73 0.0016 28.7 4.8 41 10-51 6-47 (237)
326 COG0569 TrkA K+ transport syst 34.6 50 0.0011 29.5 3.7 32 15-51 1-32 (225)
327 TIGR01007 eps_fam capsular exo 34.5 79 0.0017 27.4 5.0 37 15-51 17-55 (204)
328 PRK04946 hypothetical protein; 34.3 47 0.001 28.4 3.3 57 291-365 112-169 (181)
329 PRK03767 NAD(P)H:quinone oxido 34.3 77 0.0017 27.6 4.8 37 14-50 1-39 (200)
330 PRK03501 ppnK inorganic polyph 34.2 53 0.0012 30.1 3.9 54 349-419 39-97 (264)
331 PF02572 CobA_CobO_BtuR: ATP:c 34.2 1.8E+02 0.0039 24.7 6.8 96 14-125 3-106 (172)
332 COG1553 DsrE Uncharacterized c 34.0 1.1E+02 0.0025 24.2 5.0 37 15-51 1-41 (126)
333 PF00391 PEP-utilizers: PEP-ut 33.8 60 0.0013 23.4 3.4 29 114-142 29-59 (80)
334 COG4081 Uncharacterized protei 33.8 95 0.0021 24.7 4.5 35 17-51 6-41 (148)
335 TIGR01286 nifK nitrogenase mol 33.8 3.9E+02 0.0084 27.4 10.3 27 114-143 436-462 (515)
336 TIGR01380 glut_syn glutathione 33.8 66 0.0014 30.4 4.6 38 15-52 1-41 (312)
337 PF00551 Formyl_trans_N: Formy 33.8 95 0.0021 26.5 5.2 33 15-50 1-35 (181)
338 TIGR00460 fmt methionyl-tRNA f 33.3 64 0.0014 30.5 4.4 32 15-51 1-32 (313)
339 cd07025 Peptidase_S66 LD-Carbo 33.2 1E+02 0.0023 28.5 5.8 74 286-380 46-121 (282)
340 PF05225 HTH_psq: helix-turn-h 33.2 52 0.0011 20.7 2.6 27 405-433 1-27 (45)
341 PRK13982 bifunctional SbtC-lik 33.1 58 0.0013 32.7 4.2 40 14-54 70-109 (475)
342 PRK07236 hypothetical protein; 32.9 81 0.0017 30.7 5.3 36 11-51 3-38 (386)
343 PRK06395 phosphoribosylamine-- 32.9 2.6E+02 0.0056 27.8 8.8 32 14-50 2-33 (435)
344 PRK04296 thymidine kinase; Pro 32.4 2.4E+02 0.0051 24.2 7.5 36 15-50 2-38 (190)
345 PRK11914 diacylglycerol kinase 32.3 93 0.002 29.2 5.4 68 288-379 25-96 (306)
346 TIGR01915 npdG NADPH-dependent 32.2 51 0.0011 29.2 3.4 31 15-50 1-32 (219)
347 TIGR00959 ffh signal recogniti 32.0 2.1E+02 0.0046 28.4 7.8 42 14-55 99-141 (428)
348 PRK13054 lipid kinase; Reviewe 32.0 1.9E+02 0.0042 27.0 7.4 81 273-379 4-92 (300)
349 cd03412 CbiK_N Anaerobic cobal 31.9 86 0.0019 25.0 4.3 39 273-311 1-41 (127)
350 PLN02935 Bifunctional NADH kin 31.9 63 0.0014 32.5 4.2 54 348-419 261-318 (508)
351 PRK14477 bifunctional nitrogen 31.5 4.1E+02 0.0089 29.5 10.7 34 13-51 319-352 (917)
352 PRK12342 hypothetical protein; 31.5 87 0.0019 28.5 4.7 31 115-145 109-145 (254)
353 PF03853 YjeF_N: YjeF-related 31.4 1E+02 0.0022 26.0 4.9 38 12-50 23-60 (169)
354 PRK13604 luxD acyl transferase 31.3 1E+02 0.0022 29.0 5.2 37 13-49 35-71 (307)
355 PF02780 Transketolase_C: Tran 31.2 76 0.0017 25.0 4.0 37 12-50 7-43 (124)
356 cd07039 TPP_PYR_POX Pyrimidine 31.2 78 0.0017 26.6 4.2 27 353-379 65-97 (164)
357 COG1703 ArgK Putative periplas 31.2 1.5E+02 0.0032 27.8 6.0 42 14-55 51-92 (323)
358 PF01497 Peripla_BP_2: Peripla 31.2 69 0.0015 28.4 4.2 33 114-146 59-93 (238)
359 PLN02778 3,5-epimerase/4-reduc 31.1 75 0.0016 29.7 4.5 37 8-48 3-39 (298)
360 PRK11519 tyrosine kinase; Prov 31.1 4.1E+02 0.0089 28.5 10.5 117 14-145 525-669 (719)
361 PF07015 VirC1: VirC1 protein; 31.0 1.2E+02 0.0026 27.1 5.4 40 18-57 5-45 (231)
362 cd06559 Endonuclease_V Endonuc 31.0 53 0.0011 28.9 3.2 32 114-145 92-130 (208)
363 TIGR01162 purE phosphoribosyla 30.6 3.2E+02 0.0069 22.8 8.0 102 286-416 37-140 (156)
364 PF13450 NAD_binding_8: NAD(P) 30.6 64 0.0014 22.4 3.0 21 31-51 8-28 (68)
365 TIGR02195 heptsyl_trn_II lipop 30.4 3.6E+02 0.0077 25.5 9.2 100 14-145 174-279 (334)
366 CHL00194 ycf39 Ycf39; Provisio 30.4 83 0.0018 29.6 4.7 33 15-51 1-33 (317)
367 COG0504 PyrG CTP synthase (UTP 30.3 97 0.0021 30.9 5.0 38 15-52 1-41 (533)
368 PRK11780 isoprenoid biosynthes 30.3 1.1E+02 0.0025 27.0 5.2 38 15-52 2-43 (217)
369 PF06506 PrpR_N: Propionate ca 30.3 48 0.0011 28.2 2.8 31 348-381 33-63 (176)
370 COG0859 RfaF ADP-heptose:LPS h 30.2 1.8E+02 0.004 27.6 7.0 98 14-145 175-279 (334)
371 COG3640 CooC CO dehydrogenase 30.2 1.3E+02 0.0029 27.0 5.4 44 15-58 1-45 (255)
372 PRK06718 precorrin-2 dehydroge 29.9 77 0.0017 27.7 4.1 35 13-52 9-43 (202)
373 cd07038 TPP_PYR_PDC_IPDC_like 29.8 81 0.0017 26.4 4.0 28 352-379 60-93 (162)
374 cd00861 ProRS_anticodon_short 29.8 1E+02 0.0023 22.5 4.3 36 15-50 2-39 (94)
375 PRK03708 ppnK inorganic polyph 29.7 62 0.0013 29.9 3.6 52 349-419 57-112 (277)
376 PF12695 Abhydrolase_5: Alpha/ 29.7 1.1E+02 0.0024 24.2 4.9 33 18-50 2-34 (145)
377 PRK14620 NAD(P)H-dependent gly 29.6 62 0.0013 30.7 3.7 32 15-51 1-32 (326)
378 COG0052 RpsB Ribosomal protein 29.6 1.2E+02 0.0025 27.4 5.0 31 115-145 156-188 (252)
379 PF06564 YhjQ: YhjQ protein; 29.5 96 0.0021 28.0 4.6 35 16-50 3-38 (243)
380 PRK05234 mgsA methylglyoxal sy 29.4 2.7E+02 0.0058 22.8 6.9 97 14-142 4-112 (142)
381 PRK14076 pnk inorganic polypho 29.3 64 0.0014 33.4 4.0 52 349-419 348-404 (569)
382 COG2159 Predicted metal-depend 29.3 1.7E+02 0.0037 27.3 6.4 110 237-367 96-210 (293)
383 cd02065 B12-binding_like B12 b 29.3 97 0.0021 24.1 4.3 34 17-50 2-35 (125)
384 PF07905 PucR: Purine cataboli 29.2 2.9E+02 0.0062 21.8 7.4 55 263-327 36-91 (123)
385 TIGR00379 cobB cobyrinic acid 29.1 4.6E+02 0.01 26.2 9.9 107 17-147 2-121 (449)
386 COG2210 Peroxiredoxin family p 29.0 1.2E+02 0.0027 24.5 4.6 36 15-50 3-39 (137)
387 PF06418 CTP_synth_N: CTP synt 28.9 71 0.0015 29.1 3.6 37 15-51 1-40 (276)
388 COG1763 MobB Molybdopterin-gua 28.5 1.2E+02 0.0026 25.4 4.7 38 14-51 1-39 (161)
389 PF10093 DUF2331: Uncharacteri 28.3 5.6E+02 0.012 24.9 10.2 161 281-459 187-374 (374)
390 PRK10427 putative PTS system f 28.0 1.4E+02 0.0029 23.4 4.7 37 15-51 3-42 (114)
391 TIGR00345 arsA arsenite-activa 28.0 1.9E+02 0.0041 26.9 6.5 23 32-54 3-25 (284)
392 PF08766 DEK_C: DEK C terminal 27.9 1.8E+02 0.0039 19.0 4.6 50 405-457 1-52 (54)
393 PRK12448 dihydroxy-acid dehydr 27.7 7E+02 0.015 26.1 10.6 44 97-146 99-146 (615)
394 PRK13869 plasmid-partitioning 27.5 1E+02 0.0023 30.3 4.9 39 13-51 119-159 (405)
395 PF06792 UPF0261: Uncharacteri 27.5 2.6E+02 0.0057 27.3 7.4 96 271-382 183-281 (403)
396 PF04244 DPRP: Deoxyribodipyri 27.4 64 0.0014 28.8 3.1 25 27-51 47-71 (224)
397 TIGR00147 lipid kinase, YegS/R 27.3 2E+02 0.0044 26.6 6.7 29 349-379 57-91 (293)
398 TIGR02398 gluc_glyc_Psyn gluco 27.1 6.8E+02 0.015 25.4 14.0 106 336-458 365-481 (487)
399 COG2733 Predicted membrane pro 27.0 1.3E+02 0.0029 29.0 5.1 41 372-414 64-106 (415)
400 COG1327 Predicted transcriptio 27.0 82 0.0018 25.8 3.3 57 359-417 35-92 (156)
401 PRK07178 pyruvate carboxylase 26.9 4.5E+02 0.0098 26.5 9.5 34 15-53 3-36 (472)
402 cd01147 HemV-2 Metal binding p 26.7 96 0.0021 28.0 4.4 39 100-145 66-107 (262)
403 PRK08293 3-hydroxybutyryl-CoA 26.6 80 0.0017 29.3 3.8 32 14-50 3-34 (287)
404 PF00070 Pyr_redox: Pyridine n 26.5 1E+02 0.0022 21.9 3.6 23 29-51 9-31 (80)
405 PRK05708 2-dehydropantoate 2-r 26.4 65 0.0014 30.3 3.2 33 14-51 2-34 (305)
406 PF07355 GRDB: Glycine/sarcosi 26.3 1E+02 0.0022 29.3 4.3 31 345-380 264-294 (349)
407 PRK09841 cryptic autophosphory 26.3 8.4E+02 0.018 26.2 12.0 39 14-52 530-570 (726)
408 COG1090 Predicted nucleoside-d 26.2 4.5E+02 0.0098 24.4 8.1 20 32-51 12-31 (297)
409 PRK04761 ppnK inorganic polyph 26.1 44 0.00095 30.3 1.9 28 350-379 26-57 (246)
410 PRK06756 flavodoxin; Provision 26.0 1.3E+02 0.0028 24.5 4.6 37 14-50 1-38 (148)
411 PRK07710 acetolactate synthase 26.0 1.7E+02 0.0036 30.4 6.4 27 352-378 79-111 (571)
412 PF03720 UDPG_MGDP_dh_C: UDP-g 25.9 84 0.0018 24.0 3.2 22 29-50 17-38 (106)
413 TIGR03018 pepcterm_TyrKin exop 25.9 1.6E+02 0.0034 25.7 5.4 40 13-52 33-75 (207)
414 PRK08155 acetolactate synthase 25.8 88 0.0019 32.4 4.3 91 279-378 3-109 (564)
415 cd01075 NAD_bind_Leu_Phe_Val_D 25.6 1E+02 0.0022 26.9 4.1 32 12-48 26-57 (200)
416 PF06506 PrpR_N: Propionate ca 25.5 1.1E+02 0.0023 26.0 4.1 110 26-146 17-153 (176)
417 PRK13337 putative lipid kinase 25.2 2.3E+02 0.005 26.5 6.7 28 350-379 58-91 (304)
418 COG0771 MurD UDP-N-acetylmuram 25.1 1.1E+02 0.0024 30.5 4.5 35 14-53 7-41 (448)
419 PRK05993 short chain dehydroge 25.1 1.4E+02 0.003 27.3 5.1 34 14-50 3-36 (277)
420 cd01983 Fer4_NifH The Fer4_Nif 25.0 1.7E+02 0.0037 20.9 4.9 33 17-49 2-34 (99)
421 PRK09288 purT phosphoribosylgl 25.0 2.3E+02 0.0049 27.6 6.9 35 13-52 11-45 (395)
422 COG0041 PurE Phosphoribosylcar 25.0 4E+02 0.0087 22.1 9.5 138 275-440 4-152 (162)
423 PRK12311 rpsB 30S ribosomal pr 25.0 50 0.0011 31.3 2.1 32 114-145 151-184 (326)
424 PRK08462 biotin carboxylase; V 24.7 6.7E+02 0.014 24.9 10.3 36 13-53 3-38 (445)
425 PRK13055 putative lipid kinase 24.6 2.2E+02 0.0047 27.1 6.5 29 349-379 59-93 (334)
426 PRK09444 pntB pyridine nucleot 24.5 1.1E+02 0.0024 30.3 4.3 39 14-52 306-347 (462)
427 PRK05282 (alpha)-aspartyl dipe 24.5 2.7E+02 0.0058 25.0 6.5 43 263-307 24-66 (233)
428 TIGR02114 coaB_strep phosphopa 24.5 85 0.0018 28.0 3.4 30 19-50 18-47 (227)
429 COG0300 DltE Short-chain dehyd 24.5 1.6E+02 0.0034 27.1 5.1 36 13-51 4-39 (265)
430 TIGR02853 spore_dpaA dipicolin 24.3 1.6E+02 0.0035 27.4 5.3 23 29-51 11-33 (287)
431 PF10083 DUF2321: Uncharacteri 24.3 1.8E+02 0.0039 24.1 4.8 68 377-455 78-147 (158)
432 PF13460 NAD_binding_10: NADH( 24.2 89 0.0019 26.3 3.4 42 23-68 5-46 (183)
433 cd01143 YvrC Periplasmic bindi 24.1 1.3E+02 0.0028 25.6 4.5 38 100-144 52-90 (195)
434 PRK15059 tartronate semialdehy 24.0 90 0.002 29.1 3.6 31 15-50 1-31 (292)
435 TIGR02482 PFKA_ATP 6-phosphofr 24.0 60 0.0013 30.5 2.4 37 346-382 86-126 (301)
436 PRK10916 ADP-heptose:LPS hepto 24.0 1.1E+02 0.0024 29.2 4.4 28 115-144 261-288 (348)
437 PRK00048 dihydrodipicolinate r 24.0 5.2E+02 0.011 23.5 8.6 56 343-402 54-115 (257)
438 PLN02293 adenine phosphoribosy 23.7 2.2E+02 0.0048 24.5 5.7 29 114-142 61-91 (187)
439 TIGR00725 conserved hypothetic 23.7 1.2E+02 0.0026 25.3 4.0 34 14-47 1-36 (159)
440 PF08452 DNAP_B_exo_N: DNA pol 23.6 61 0.0013 16.7 1.3 17 262-278 4-20 (22)
441 PRK01372 ddl D-alanine--D-alan 23.6 1.4E+02 0.003 27.9 4.9 38 14-51 4-45 (304)
442 PLN00141 Tic62-NAD(P)-related 23.5 1.9E+02 0.0042 25.9 5.7 36 11-50 14-49 (251)
443 cd02040 NifH NifH gene encodes 23.4 1.5E+02 0.0032 27.0 4.9 36 16-51 3-38 (270)
444 cd07062 Peptidase_S66_mccF_lik 23.4 1.7E+02 0.0038 27.5 5.5 73 286-379 50-124 (308)
445 TIGR00853 pts-lac PTS system, 23.4 2.3E+02 0.005 21.2 5.1 38 13-50 2-39 (95)
446 PRK00652 lpxK tetraacyldisacch 23.4 1.5E+02 0.0033 28.1 5.1 39 16-54 51-91 (325)
447 PF14626 RNase_Zc3h12a_2: Zc3h 23.4 1E+02 0.0022 24.2 3.1 31 28-58 9-39 (122)
448 PRK13010 purU formyltetrahydro 23.4 4E+02 0.0087 24.8 7.7 115 292-433 159-275 (289)
449 COG1440 CelA Phosphotransferas 23.3 2E+02 0.0043 22.0 4.5 37 14-50 1-37 (102)
450 PRK08309 short chain dehydroge 23.3 1.2E+02 0.0025 25.9 3.9 31 15-50 1-31 (177)
451 PRK06270 homoserine dehydrogen 23.3 6.3E+02 0.014 24.1 9.3 58 342-400 80-149 (341)
452 PRK13059 putative lipid kinase 23.3 2.6E+02 0.0055 26.1 6.5 29 349-379 56-90 (295)
453 TIGR01743 purR_Bsub pur operon 23.2 1.6E+02 0.0035 27.1 4.9 31 114-144 127-159 (268)
454 COG0162 TyrS Tyrosyl-tRNA synt 23.2 1.3E+02 0.0027 29.6 4.5 37 14-51 34-73 (401)
455 TIGR00355 purH phosphoribosyla 23.2 1E+02 0.0022 31.0 3.9 45 29-76 11-57 (511)
456 TIGR00640 acid_CoA_mut_C methy 23.1 1.7E+02 0.0036 23.6 4.5 38 14-51 2-39 (132)
457 PF01695 IstB_IS21: IstB-like 23.1 1.7E+02 0.0038 24.8 4.9 38 14-51 47-84 (178)
458 PRK07454 short chain dehydroge 23.0 1.5E+02 0.0033 26.2 4.9 34 14-50 5-38 (241)
459 PF07755 DUF1611: Protein of u 23.0 1.7E+02 0.0037 27.4 5.1 39 13-51 111-150 (301)
460 PRK12767 carbamoyl phosphate s 22.8 1.2E+02 0.0026 28.6 4.3 32 14-51 1-34 (326)
461 PLN02686 cinnamoyl-CoA reducta 22.8 1.9E+02 0.0042 27.9 5.8 36 11-50 50-85 (367)
462 COG1028 FabG Dehydrogenases wi 22.7 1.6E+02 0.0035 26.2 5.0 35 14-51 4-38 (251)
463 PRK05579 bifunctional phosphop 22.7 1.7E+02 0.0037 28.7 5.4 22 30-51 216-237 (399)
464 PF02702 KdpD: Osmosensitive K 22.7 1.5E+02 0.0033 25.9 4.4 39 13-51 4-42 (211)
465 PTZ00318 NADH dehydrogenase-li 22.7 1.1E+02 0.0024 30.2 4.2 38 9-51 5-42 (424)
466 PRK06180 short chain dehydroge 22.7 1.6E+02 0.0035 26.9 5.1 34 15-51 4-37 (277)
467 PLN02695 GDP-D-mannose-3',5'-e 22.6 1.5E+02 0.0033 28.7 5.0 34 13-50 20-53 (370)
468 PRK06924 short chain dehydroge 22.6 1.5E+02 0.0032 26.5 4.7 33 15-50 1-33 (251)
469 TIGR01470 cysG_Nterm siroheme 22.6 1.4E+02 0.003 26.2 4.3 36 13-53 8-43 (205)
470 PF02233 PNTB: NAD(P) transhyd 22.5 1.1E+02 0.0024 30.5 3.9 38 14-51 307-347 (463)
471 TIGR00064 ftsY signal recognit 22.5 2.4E+02 0.0051 26.0 6.0 40 14-53 72-111 (272)
472 PF00148 Oxidored_nitro: Nitro 22.4 5.8E+02 0.013 24.8 9.2 33 14-51 271-303 (398)
473 PRK05246 glutathione synthetas 22.4 1.3E+02 0.0029 28.3 4.5 39 14-52 1-42 (316)
474 PRK13230 nitrogenase reductase 22.3 1.6E+02 0.0036 27.0 5.0 37 15-51 2-38 (279)
475 cd01976 Nitrogenase_MoFe_alpha 22.3 1E+02 0.0022 30.5 3.8 27 114-143 368-394 (421)
476 PLN02496 probable phosphopanto 22.2 98 0.0021 27.2 3.2 42 14-57 19-60 (209)
477 PRK06456 acetolactate synthase 22.2 1.8E+02 0.004 30.1 5.8 26 353-378 70-101 (572)
478 PF05728 UPF0227: Uncharacteri 22.2 2.1E+02 0.0045 24.7 5.2 29 117-145 61-90 (187)
479 PRK10422 lipopolysaccharide co 22.2 2.8E+02 0.0061 26.5 6.8 28 115-144 262-289 (352)
480 COG0223 Fmt Methionyl-tRNA for 22.1 1.5E+02 0.0033 27.8 4.6 37 14-55 1-37 (307)
481 CHL00067 rps2 ribosomal protei 22.1 62 0.0014 29.0 2.1 33 114-146 160-194 (230)
482 PRK03359 putative electron tra 22.1 1.5E+02 0.0033 27.0 4.6 31 115-145 112-148 (256)
483 PRK13011 formyltetrahydrofolat 21.9 4.8E+02 0.01 24.3 7.9 116 292-434 155-272 (286)
484 PRK07417 arogenate dehydrogena 21.8 1.1E+02 0.0024 28.2 3.8 32 15-51 1-32 (279)
485 PF05693 Glycogen_syn: Glycoge 21.8 1.4E+02 0.003 31.0 4.5 94 342-436 462-566 (633)
486 PF07991 IlvN: Acetohydroxy ac 21.8 89 0.0019 26.2 2.7 51 14-69 4-55 (165)
487 PRK03094 hypothetical protein; 21.7 86 0.0019 22.7 2.3 20 31-50 10-29 (80)
488 PF03403 PAF-AH_p_II: Platelet 21.7 92 0.002 30.4 3.3 41 13-53 98-138 (379)
489 PF00448 SRP54: SRP54-type pro 21.7 1.9E+02 0.004 25.2 4.9 39 16-54 3-41 (196)
490 COG1066 Sms Predicted ATP-depe 21.6 59 0.0013 31.7 1.8 37 15-52 94-130 (456)
491 PF03698 UPF0180: Uncharacteri 21.6 85 0.0019 22.8 2.3 21 31-51 10-30 (80)
492 COG3195 Uncharacterized protei 21.6 4.1E+02 0.0089 22.3 6.3 94 342-437 64-164 (176)
493 cd02033 BchX Chlorophyllide re 21.5 2.4E+02 0.0052 26.9 5.9 37 15-51 32-68 (329)
494 COG4635 HemG Flavodoxin [Energ 21.5 1.7E+02 0.0036 24.5 4.1 36 15-50 1-37 (175)
495 KOG0081 GTPase Rab27, small G 21.5 1.3E+02 0.0029 25.0 3.6 32 114-145 123-164 (219)
496 TIGR01744 XPRTase xanthine pho 21.5 2E+02 0.0043 24.9 5.0 31 114-144 49-81 (191)
497 TIGR03453 partition_RepA plasm 21.4 1.6E+02 0.0036 28.6 5.1 41 12-52 101-143 (387)
498 COG0665 DadA Glycine/D-amino a 21.4 1.2E+02 0.0025 29.4 4.0 34 13-51 3-36 (387)
499 PRK13235 nifH nitrogenase redu 21.4 1.6E+02 0.0035 26.9 4.8 37 15-51 2-38 (274)
500 PRK06222 ferredoxin-NADP(+) re 21.3 1.7E+02 0.0037 27.0 4.9 37 14-52 98-134 (281)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.8e-68 Score=518.78 Aligned_cols=442 Identities=45% Similarity=0.831 Sum_probs=348.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCeeEEecCCCCCCcccccccHHHHHHHHHH
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPN-PSNYPHFTFCSIEDSLSETEASTADLVALLSLLNV 91 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (460)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+... .....++++..+|+++|++.........++..+..
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~~ 85 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEFLHKLNK 85 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHHHHHHHH
Confidence 45799999999999999999999999999999999999876422 11124799999999888643222234455666666
Q ss_pred hcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCC-CCCCC-
Q 040486 92 QCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGY-FPIRD- 169 (460)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~- 169 (460)
.+...+.+.+.++..... .+++|||+|.+.+|+..+|+++|||++.+++++++.++.+.+++.....+. .|...
T Consensus 86 ~~~~~~~~~L~~l~~~~~----~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~ 161 (451)
T PLN02410 86 ECQVSFKDCLGQLVLQQG----NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEP 161 (451)
T ss_pred HhHHHHHHHHHHHHhccC----CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcccc
Confidence 777778887777643222 367999999999999999999999999999999988876665333222111 12111
Q ss_pred -CCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCccccCCCCcC
Q 040486 170 -SQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIGPFHKF 248 (460)
Q Consensus 170 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~ 248 (460)
......+|+++.++..+++.........+...+.... .+..++.+++|||.+||+..++++++.++.|+++|||++..
T Consensus 162 ~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~ 240 (451)
T PLN02410 162 KGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLV 240 (451)
T ss_pred ccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccc
Confidence 1111246777777777776432222222333333222 35678899999999999999999987666789999999864
Q ss_pred CCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHH
Q 040486 249 FSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFL 328 (460)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~ 328 (460)
... +......+.++.+||+++++++||||||||....+.+++.+++.+|+.++++|||++..+...+.++...+|++|+
T Consensus 241 ~~~-~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~ 319 (451)
T PLN02410 241 ASA-PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFS 319 (451)
T ss_pred cCC-CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHH
Confidence 321 1111122345789999988899999999999999999999999999999999999998532211122234899999
Q ss_pred hhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHH
Q 040486 329 ETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGE 408 (460)
Q Consensus 329 ~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 408 (460)
||.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.+|+|+.+...++.++
T Consensus 320 er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 399 (451)
T PLN02410 320 KIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGA 399 (451)
T ss_pred HhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999874699999976789999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 040486 409 VERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILSF 460 (460)
Q Consensus 409 l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
|+++|+++|.++++++||++++++++++++++.+|||+.+++++|+++++++
T Consensus 400 v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 400 VERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 9999999998866789999999999999999999999999999999999763
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=6.9e-65 Score=496.60 Aligned_cols=436 Identities=29% Similarity=0.534 Sum_probs=343.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----------C---CCCeeEEecCCCCCCccccc
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPS----------N---YPHFTFCSIEDSLSETEAST 79 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~----------~---~~g~~~~~~~~~~~~~~~~~ 79 (460)
.+.||+++|+|++||++|++.||+.|+.+|..|||++++.+..... . ...++|..+|+++|.+.+..
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~ 85 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRR 85 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCcccc
Confidence 3589999999999999999999999999999999999986543211 0 11266776777887654333
Q ss_pred ccHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchh
Q 040486 80 ADLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVL 159 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 159 (460)
.+...++..+...+...+++++.++.... .+++|||+|.+.+|+..+|+++|||.+.+++++++.++.+.+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~- 159 (480)
T PLN02555 86 QDLDLYLPQLELVGKREIPNLVKRYAEQG-----RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH- 159 (480)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHHhccC-----CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh-
Confidence 34444555555566777777777764221 235999999999999999999999999999999998887766432
Q ss_pred hccCCCCCCC---CCCCccCCCCCCCCCCCCCCcccc--cchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhc
Q 040486 160 SQKGYFPIRD---SQSEAPVPELPPLRVKDIPVVETC--YRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQD 234 (460)
Q Consensus 160 ~~~~~~p~~~---~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 234 (460)
+..+... ......+|+++.++..+++..... ......+.+.+..+....++++++|||.+||...++.+++.
T Consensus 160 ---~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~ 236 (480)
T PLN02555 160 ---GLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL 236 (480)
T ss_pred ---cCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC
Confidence 1111111 112234788888888888854321 12233444445555677888999999999999999888763
Q ss_pred CCCCccccCCCCcCCCC--C--CcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEc
Q 040486 235 FPIPMFPIGPFHKFFSA--S--SSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVR 310 (460)
Q Consensus 235 ~~~p~~~vG~l~~~~~~--~--~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 310 (460)
.|++.|||+...... . +...+..++++.+||+.++++++|||||||+...+.+++.+++.+++.++++|||++.
T Consensus 237 --~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~ 314 (480)
T PLN02555 237 --CPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMR 314 (480)
T ss_pred --CCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 369999999753211 0 0111233456899999988889999999999999999999999999999999999987
Q ss_pred CCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHH
Q 040486 311 PGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYV 390 (460)
Q Consensus 311 ~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v 390 (460)
............+|++++++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++
T Consensus 315 ~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~ 394 (480)
T PLN02555 315 PPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL 394 (480)
T ss_pred cCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHH
Confidence 43110000023489999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcceeeeC-----C-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 391 SDVWKVGLHLE-----R-KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 391 ~~~~G~g~~~~-----~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
++.||+|+.+. . .++.++|.++|+++|.+++++.+|+||++|+++.++|+.+|||+.+++++|++.+.+
T Consensus 395 ~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 395 VDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred HHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 88579999993 3 589999999999999887788999999999999999999999999999999999864
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.7e-64 Score=492.51 Aligned_cols=427 Identities=30% Similarity=0.522 Sum_probs=333.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCeeEEecCCCCCCcccccccHHHHHHH
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPS----NYPHFTFCSIEDSLSETEASTADLVALLSL 88 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (460)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... ..++++++.+|++++.+. ..++..++..
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~~l~~a 82 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFFSIENS 82 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHHHHHHH
Confidence 3469999999999999999999999999999999999987653221 123799999998775322 1234344444
Q ss_pred HHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCC
Q 040486 89 LNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIR 168 (460)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (460)
+...+...+.++++++... .+++|||+|.+.+|+..+|+++|||++.+++++++.++.+.+.+.....+..+..
T Consensus 83 ~~~~~~~~l~~ll~~l~~~------~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (448)
T PLN02562 83 MENTMPPQLERLLHKLDED------GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISET 156 (448)
T ss_pred HHHhchHHHHHHHHHhcCC------CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccc
Confidence 4446677777777776431 2458999999999999999999999999999988877766554432222111111
Q ss_pred C---C-CCCccCCCCCCCCCCCCCCccccc--chhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhc----CCCC
Q 040486 169 D---S-QSEAPVPELPPLRVKDIPVVETCY--RETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQD----FPIP 238 (460)
Q Consensus 169 ~---~-~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~~~p 238 (460)
+ . .....+|+++.++..+++...... .....+.+.+..+...+++.+++|||.+||+..++..... +.++
T Consensus 157 ~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~ 236 (448)
T PLN02562 157 GCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQ 236 (448)
T ss_pred cccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCC
Confidence 0 0 011246777777888887643211 2233445555556677888999999999999887766532 2356
Q ss_pred ccccCCCCcCCCCC--CcccccCccccccccCCCCCCeEEEEEccccc-cCCHHHHHHHHHHHHcCCCCEEEEEcCCccC
Q 040486 239 MFPIGPFHKFFSAS--SSSLLAHDQTSISWLDKQTPKSVIYVSFGSIA-AINETEFLEVAWGLANSKVPFLWVVRPGLVR 315 (460)
Q Consensus 239 ~~~vG~l~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 315 (460)
++.|||++...... +...++.+.++.+||++++++++|||||||.. ..+.+++++++.++++++++|||++..+.
T Consensus 237 v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~-- 314 (448)
T PLN02562 237 ILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW-- 314 (448)
T ss_pred EEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc--
Confidence 99999998654210 11123445567799999888899999999986 57899999999999999999999997532
Q ss_pred CCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhc
Q 040486 316 GAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWK 395 (460)
Q Consensus 316 ~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G 395 (460)
.+.+|++++++.++|+++++|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+|
T Consensus 315 ----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 315 ----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK 390 (448)
T ss_pred ----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhC
Confidence 1248999999999999999999999999999999999999999999999999999999999999999999986469
Q ss_pred ceeeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 396 VGLHLERKLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 396 ~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+|+.+.. ++.++|.++|+++|.| ++||+||++++++++++ .+||||.+++++|++.++
T Consensus 391 ~g~~~~~-~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 391 IGVRISG-FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred ceeEeCC-CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 9988854 8999999999999999 89999999999999876 567999999999999874
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.6e-64 Score=487.57 Aligned_cols=422 Identities=29% Similarity=0.492 Sum_probs=336.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--CCCCeeEEecCCCCCCc-ccccccHHHHHHH
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPS--NYPHFTFCSIEDSLSET-EASTADLVALLSL 88 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~ 88 (460)
+.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... ..+++++..+|+++|++ .+...+...++..
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~ 82 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQN 82 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHH
Confidence 34579999999999999999999999999999999999986643321 12469999999998873 2333345566776
Q ss_pred HHHhcchhHHHHHHHHhcccccccCCCe-eEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCC
Q 040486 89 LNVQCVVPFRNCLAKLLSNVEEEEKEPI-ACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPI 167 (460)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~~kp-D~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 167 (460)
+...+.+.+++++..+... .+| +|||+|.+.+|+..+|+++|||++.+++++++.+..+.+ +.. ...
T Consensus 83 ~~~~~~~~~~~~l~~~~~~------~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~~---- 150 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQST------DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NNG---- 150 (449)
T ss_pred HHHhhhHHHHHHHHHhhcc------CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-ccC----
Confidence 6667778888888776432 245 999999999999999999999999999988777655432 111 111
Q ss_pred CCCCCCccCCCCCCCCCCCCCCcccc--cchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCccccCCC
Q 040486 168 RDSQSEAPVPELPPLRVKDIPVVETC--YRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIGPF 245 (460)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l 245 (460)
.....+|+++.++..+++..... ........+.+..+....++.+++|||.+||+..++.+++ ..|++.|||+
T Consensus 151 ---~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~--~~~v~~VGPl 225 (449)
T PLN02173 151 ---SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK--VCPVLTIGPT 225 (449)
T ss_pred ---CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh--cCCeeEEccc
Confidence 11123677777777888754321 2222334344445567788999999999999999988865 2579999999
Q ss_pred CcCC-------CCCCc--ccc--cCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCcc
Q 040486 246 HKFF-------SASSS--SLL--AHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLV 314 (460)
Q Consensus 246 ~~~~-------~~~~~--~~~--~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 314 (460)
+... ...+. ..+ ..++++.+||+.++++++|||||||....+.+++.+++.++ .+.+|+|++....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~- 302 (449)
T PLN02173 226 VPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE- 302 (449)
T ss_pred CchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc-
Confidence 7421 00000 111 22345889999998899999999999999999999999999 6788999997532
Q ss_pred CCCccCCCCchhHHhhc-CCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhh
Q 040486 315 RGAEWIEPLPQGFLETL-DGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDV 393 (460)
Q Consensus 315 ~~~~~~~~lp~~~~~~~-~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~ 393 (460)
...+|++++++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.
T Consensus 303 -----~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~ 377 (449)
T PLN02173 303 -----ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDV 377 (449)
T ss_pred -----hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHH
Confidence 234889998888 57789999999999999999999999999999999999999999999999999999999975
Q ss_pred hcceeeeCC-----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 394 WKVGLHLER-----KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 394 ~G~g~~~~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
||+|+.+.. .++.++|+++|+++|.|++++.+|++|++++++.+++..+|||+.+++++|++.+.
T Consensus 378 ~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 378 WKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred hCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 699988853 25899999999999998778899999999999999999999999999999999874
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.6e-64 Score=491.08 Aligned_cols=431 Identities=29% Similarity=0.508 Sum_probs=332.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCCCCCC----CCCCCeeEEecCC----CCCCcccccccHH
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILY-SKGFSITIIHTNFNSPNP----SNYPHFTFCSIED----SLSETEASTADLV 83 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~-~~Gh~Vt~~~~~~~~~~~----~~~~g~~~~~~~~----~~~~~~~~~~~~~ 83 (460)
.+.||+++|++++||++|++.||+.|+ .+|+.|||++++.+.... ...+++++..+|. ++++.. .+..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~~~ 80 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AHVV 80 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---ccHH
Confidence 457999999999999999999999998 789999999999764321 1113688998884 443211 1222
Q ss_pred HHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccC
Q 040486 84 ALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKG 163 (460)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
..+..........+++++.++. .+|+|||+|.+.+|+..+|+++|||++.+++++++.++.+.+.+......
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~--------~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 152 (481)
T PLN02992 81 TKIGVIMREAVPTLRSKIAEMH--------QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDI 152 (481)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC--------CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccc
Confidence 2233333344455555555542 36899999999999999999999999999999998887665543221110
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhc--C----CC
Q 040486 164 YFPIRDSQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQD--F----PI 237 (460)
Q Consensus 164 ~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~----~~ 237 (460)
..+.........+|+++.++..+++.......+.....+.+....+.+++.+++|||.+||...++.++.. + .+
T Consensus 153 ~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~ 232 (481)
T PLN02992 153 KEEHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARV 232 (481)
T ss_pred ccccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCC
Confidence 00100001123477777777777774222222233444455555677899999999999999999887652 1 25
Q ss_pred CccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccC--
Q 040486 238 PMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVR-- 315 (460)
Q Consensus 238 p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-- 315 (460)
|++.|||+...... . ..++++.+||+.+++++||||||||...++.+++.+++.+|+.++++|||++......
T Consensus 233 ~v~~VGPl~~~~~~---~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~ 307 (481)
T PLN02992 233 PVYPIGPLCRPIQS---S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSA 307 (481)
T ss_pred ceEEecCccCCcCC---C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccc
Confidence 79999999753211 1 2344589999998889999999999999999999999999999999999999642100
Q ss_pred --------C---Cc-cCCCCchhHHhhcCCCCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccc
Q 040486 316 --------G---AE-WIEPLPQGFLETLDGRGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGD 382 (460)
Q Consensus 316 --------~---~~-~~~~lp~~~~~~~~~~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~D 382 (460)
. .+ ....+|++|++|.++++.++ +|+||.+||+|+++++||||||+||++||+++|||||++|+++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~D 387 (481)
T PLN02992 308 CSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAE 387 (481)
T ss_pred ccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccch
Confidence 0 00 01248999999999888766 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHh-hhhcceeeeCC---ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHH
Q 040486 383 QMVNARYVS-DVWKVGLHLER---KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLI--QGGSSYQSLESLISY 456 (460)
Q Consensus 383 Q~~na~~v~-~~~G~g~~~~~---~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~g~~~~~~~~~~~~ 456 (460)
|+.||++++ + +|+|+.++. .++.++|.++|+++|.|++++.+|+++++++++.++|+. +||||.+++++|++.
T Consensus 388 Q~~na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~ 466 (481)
T PLN02992 388 QNMNAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKE 466 (481)
T ss_pred hHHHHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 999999995 7 799999975 489999999999999887778999999999999999994 699999999999999
Q ss_pred HHcC
Q 040486 457 ILSF 460 (460)
Q Consensus 457 ~~~~ 460 (460)
+++|
T Consensus 467 ~~~~ 470 (481)
T PLN02992 467 CQRF 470 (481)
T ss_pred HHHH
Confidence 8874
No 6
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.2e-64 Score=494.41 Aligned_cols=431 Identities=31% Similarity=0.546 Sum_probs=335.8
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCC---CCCeeEEecCCCCCCcccccccHHH
Q 040486 10 HQKKGRRLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTNFNSPNPSN---YPHFTFCSIEDSLSETEASTADLVA 84 (460)
Q Consensus 10 ~~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (460)
++.++.||+++|+|++||++|++.||++|+++ ||.|||++++.+...... ..|++|+.+|++++.+.....+...
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~~ 85 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFPG 85 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHHH
Confidence 45678999999999999999999999999999 999999999876543332 1489999999876654433334555
Q ss_pred HHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCC
Q 040486 85 LLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGY 164 (460)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 164 (460)
++..+.+.+...+.++++++. .++||||+|.+++|+..+|+++|||++.++++++..++.+.+.+.....+.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~--------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~ 157 (459)
T PLN02448 86 FLEAVMTKMEAPFEQLLDRLE--------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGH 157 (459)
T ss_pred HHHHHHHHhHHHHHHHHHhcC--------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccC
Confidence 555555555666666666553 368999999999999999999999999999999877777665443222211
Q ss_pred CCCCC----CCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCcc
Q 040486 165 FPIRD----SQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMF 240 (460)
Q Consensus 165 ~p~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~ 240 (460)
.|... ......+|++..++..+++...........+.+.........++.+++|||.+||+..++.+++.++.|++
T Consensus 158 ~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~ 237 (459)
T PLN02448 158 FPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVY 237 (459)
T ss_pred CCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceE
Confidence 12111 01111367776677777764332222232334444445566778999999999999989988876666899
Q ss_pred ccCCCCcCCCC---CCcccc-cCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCC
Q 040486 241 PIGPFHKFFSA---SSSSLL-AHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRG 316 (460)
Q Consensus 241 ~vG~l~~~~~~---~~~~~~-~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (460)
.|||+...... ...... +.+.++.+|++.++++++|||||||....+.+++++++.+|+.++++|||++....
T Consensus 238 ~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~--- 314 (459)
T PLN02448 238 PIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA--- 314 (459)
T ss_pred EecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch---
Confidence 99999753211 000001 12235889999988899999999999888899999999999999999999876421
Q ss_pred CccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcc
Q 040486 317 AEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKV 396 (460)
Q Consensus 317 ~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 396 (460)
.++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.||+
T Consensus 315 --------~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~ 386 (459)
T PLN02448 315 --------SRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKI 386 (459)
T ss_pred --------hhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCc
Confidence 234555567788899999999999999999999999999999999999999999999999999999874688
Q ss_pred eeeeCC------ccCHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 397 GLHLER------KLERGEVERTIRRVMTE--AEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 397 g~~~~~------~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
|+.+.. ..++++|+++|+++|.+ ++++.||+||++++++++++..+||||.+++++|++.+.+
T Consensus 387 G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 387 GWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred eEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 888742 47999999999999986 3478999999999999999999999999999999999864
No 7
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.6e-64 Score=489.83 Aligned_cols=434 Identities=25% Similarity=0.396 Sum_probs=327.5
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----C-CCCeeEEecC----CCCCCcccccc
Q 040486 10 HQKKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPS----N-YPHFTFCSIE----DSLSETEASTA 80 (460)
Q Consensus 10 ~~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~----~-~~g~~~~~~~----~~~~~~~~~~~ 80 (460)
.++++.||+++|++++||++|++.||+.|+.+|..|||++++.+..... . ..+++++.+| +++|++.+...
T Consensus 2 ~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~ 81 (472)
T PLN02670 2 KREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESST 81 (472)
T ss_pred CCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCccccc
Confidence 3456789999999999999999999999999999999999997653222 1 1368999988 57776543332
Q ss_pred cHH----HHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhc
Q 040486 81 DLV----ALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAF 156 (460)
Q Consensus 81 ~~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 156 (460)
+.. ..+....+.+...+++++.+ .+++|||+|.+..|+..+|+++|||++.+++++++.++.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~ 151 (472)
T PLN02670 82 DVPYTKQQLLKKAFDLLEPPLTTFLET----------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPP 151 (472)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHh----------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhh
Confidence 322 23333334444444444433 2589999999999999999999999999999998888775532
Q ss_pred chhhccCCCCCCCCCCCccCCCC----C--CCCCCCCCCccc--ccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHH
Q 040486 157 PVLSQKGYFPIRDSQSEAPVPEL----P--PLRVKDIPVVET--CYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASL 228 (460)
Q Consensus 157 ~~~~~~~~~p~~~~~~~~~~~~~----~--~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 228 (460)
......+..+...... ..+|++ . .++..+++.... .........+.+....+..++++++|||.+||...+
T Consensus 152 ~~~~~~~~~~~~~~~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l 230 (472)
T PLN02670 152 SSLMEGGDLRSTAEDF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWF 230 (472)
T ss_pred HhhhhcccCCCccccc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHH
Confidence 2111111111111110 112322 1 234445553321 111112223334444566788999999999999999
Q ss_pred HHhhhcCCCCccccCCCCcCC-CCCCcccc--cCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCE
Q 040486 229 TKFHQDFPIPMFPIGPFHKFF-SASSSSLL--AHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPF 305 (460)
Q Consensus 229 ~~~~~~~~~p~~~vG~l~~~~-~~~~~~~~--~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 305 (460)
+.+++.++.|++.|||+.... ........ ..++++.+||+++++++||||||||...++.+++.+++.+|+.++++|
T Consensus 231 ~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~F 310 (472)
T PLN02670 231 DLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPF 310 (472)
T ss_pred HHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCE
Confidence 999875557899999997531 11000101 112458899999888999999999999999999999999999999999
Q ss_pred EEEEcCCccCCCccCCCCchhHHhhcCCCCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchh
Q 040486 306 LWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQM 384 (460)
Q Consensus 306 i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~ 384 (460)
||++.............+|++|+++.++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 311 lWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 390 (472)
T PLN02670 311 FWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQG 390 (472)
T ss_pred EEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccH
Confidence 999985321110112359999999999999885 9999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcceeeeCC-----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 385 VNARYVSDVWKVGLHLER-----KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 385 ~na~~v~~~~G~g~~~~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
.||+++++ +|+|+.+.. .++.++|+++|+++|.|++|.+||+||++++++++ +.++..+++++|++++.+
T Consensus 391 ~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 391 LNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHHHH
Confidence 99999999 699999964 38999999999999988667799999999999999 789999999999999976
No 8
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.2e-63 Score=482.59 Aligned_cols=440 Identities=26% Similarity=0.451 Sum_probs=332.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCC-C----C----CCCCCeeEEecCCCCC-Ccccccc
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKG--FSITIIHTNFNSP-N----P----SNYPHFTFCSIEDSLS-ETEASTA 80 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~G--h~Vt~~~~~~~~~-~----~----~~~~g~~~~~~~~~~~-~~~~~~~ 80 (460)
.+.||+++|++++||++|++.||+.|+.+| ..|||++++.+.. . . ...++++|..+|+... .......
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 457999999999999999999999999998 9999999986541 1 1 1123699999995432 1111123
Q ss_pred cHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhh
Q 040486 81 DLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLS 160 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 160 (460)
+....+..+...+...+++.++++.+....+ ..+++|||+|.+++|+..+|+++|||++.+++++++.++.+.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALD-GVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccC-CCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 3444444444555555555555543321000 013499999999999999999999999999999998888776654321
Q ss_pred ccC-CCCCCCCCCCccCCCC-CCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhh-cCCC
Q 040486 161 QKG-YFPIRDSQSEAPVPEL-PPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQ-DFPI 237 (460)
Q Consensus 161 ~~~-~~p~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~ 237 (460)
... ..+.........+|++ +.+...+++..... .+. ...+.+....+.+++.+++||+++||.+.++.++. ...+
T Consensus 161 ~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~-~~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p 238 (468)
T PLN02207 161 SKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFV-EDG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYP 238 (468)
T ss_pred ccccccCcCCCCCeEECCCCCCCCChHHCcchhcC-Ccc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCC
Confidence 110 0110011112347887 57888888754321 112 23333444567889999999999999998888754 2235
Q ss_pred CccccCCCCcCCCCCCc-ccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCC
Q 040486 238 PMFPIGPFHKFFSASSS-SLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRG 316 (460)
Q Consensus 238 p~~~vG~l~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (460)
+++.|||++........ .....++++.+||++++++++|||||||....+.+++++++.+|+.++++|||++.......
T Consensus 239 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~ 318 (468)
T PLN02207 239 SVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTN 318 (468)
T ss_pred cEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccc
Confidence 69999999864322110 01112356999999988889999999999999999999999999999999999998532111
Q ss_pred CccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcc
Q 040486 317 AEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKV 396 (460)
Q Consensus 317 ~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 396 (460)
.+.+|++|+++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+
T Consensus 319 ---~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gv 395 (468)
T PLN02207 319 ---DDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKL 395 (468)
T ss_pred ---cccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCc
Confidence 23489999999999999999999999999999999999999999999999999999999999999999986653699
Q ss_pred eeeeC------C--ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 397 GLHLE------R--KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 397 g~~~~------~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
|+.+. . ..+.++|.++|+++|.+ ++++||+||+++++++++|+.+||||.+++++|++.++.
T Consensus 396 Gv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 396 AVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred eEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 98662 1 35999999999999972 248999999999999999999999999999999999864
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.8e-63 Score=488.40 Aligned_cols=438 Identities=25% Similarity=0.419 Sum_probs=330.6
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCeeEEecC----CCCCCccccccc
Q 040486 10 HQKKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPS----NYPHFTFCSIE----DSLSETEASTAD 81 (460)
Q Consensus 10 ~~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~----~~~g~~~~~~~----~~~~~~~~~~~~ 81 (460)
...+++||+++|++++||++|++.||+.|+.+|+.|||++|+.+..... ..++++++.+| .++|++.+...+
T Consensus 5 ~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 5 NKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred ccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 4456799999999999999999999999999999999999997754221 12367777654 245555433222
Q ss_pred HH----HHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcc
Q 040486 82 LV----ALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFP 157 (460)
Q Consensus 82 ~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 157 (460)
.. ..+..........+.+.+..+ . .+|+|||+|.+.+|+..+|+++|||++.+++++++.++.+.+..
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~----~----~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~ 156 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH----P----SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLW 156 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC----C----CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHh
Confidence 21 122222233334444444332 1 36899999999999999999999999999999999988877643
Q ss_pred hhhccCCCCCCC-CCC-CccCCCCCCCCCCCCCCcccc--cchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhh
Q 040486 158 VLSQKGYFPIRD-SQS-EAPVPELPPLRVKDIPVVETC--YRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQ 233 (460)
Q Consensus 158 ~~~~~~~~p~~~-~~~-~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 233 (460)
........+... ... ...+|+++.++..+++..... ........+.+.......++.+++|||.+||...++.+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 157 REMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred hcccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 211110000000 011 123677777888887753321 1222333344444445677889999999999999999988
Q ss_pred cCC-CCccccCCCCcCCCCC------CcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEE
Q 040486 234 DFP-IPMFPIGPFHKFFSAS------SSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFL 306 (460)
Q Consensus 234 ~~~-~p~~~vG~l~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 306 (460)
.++ +|++.|||+....... +.+....++++.+||+.++++++|||||||....+.+++.+++.+|+.++++||
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 665 5799999997532110 001111235689999998889999999999999999999999999999999999
Q ss_pred EEEcCCccCCCccCCCCchhHHhhcCCCCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhh
Q 040486 307 WVVRPGLVRGAEWIEPLPQGFLETLDGRGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMV 385 (460)
Q Consensus 307 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~ 385 (460)
|+++.......+ ...+|+++.++.+++++++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 317 w~~~~~~~~~~~-~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 395 (477)
T PLN02863 317 WCVKEPVNEESD-YSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFV 395 (477)
T ss_pred EEECCCcccccc-hhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchh
Confidence 999753211101 2458999999988766654 99999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcceeeeCC----ccCHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 386 NARYVSDVWKVGLHLER----KLERGEVERTIRRVM-TEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 386 na~~v~~~~G~g~~~~~----~~~~~~l~~~i~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
||+++.+.+|+|+.+.. ..+.+++.++|+++| ++ +.||+||++++++.++|+.+|||+.+++++|++.+++
T Consensus 396 na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~---~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 396 NASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSEN---QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVE 471 (477)
T ss_pred hHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 99997543799999843 358999999999999 45 8999999999999999999999999999999999876
No 10
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5.4e-63 Score=483.72 Aligned_cols=426 Identities=30% Similarity=0.512 Sum_probs=328.2
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCCCCCCCCC----CCCeeEEecCCCCCCcccccccHHH
Q 040486 11 QKKGRRLILFPLPLQGHINPMLQLANI--LYSKGFSITIIHTNFNSPNPSN----YPHFTFCSIEDSLSETEASTADLVA 84 (460)
Q Consensus 11 ~~~~~~vl~~~~~~~GH~~p~l~La~~--L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (460)
...+.||+++|++++||++|++.||+. |+++|+.|||++++.+...... ...+++..+|+++|++.. .+..+
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~~~~~ 82 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--RAPET 82 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--cCHHH
Confidence 344689999999999999999999999 5699999999999976543221 235788878888876542 23334
Q ss_pred HHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCC
Q 040486 85 LLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGY 164 (460)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 164 (460)
++..+.+.+.+.+.+.+++ .+|||||+|.+..|+..+|+++|||.+.++++++..+..+.+.... ...
T Consensus 83 ~~~~~~~~~~~~l~~~l~~----------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~ 150 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE----------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNS 150 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc----------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCC
Confidence 4444444444444333322 3699999999999999999999999999999988888776643221 111
Q ss_pred CCCCCC-CCCccCCCCCCCCCCCCCCcccccchh-HHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCcccc
Q 040486 165 FPIRDS-QSEAPVPELPPLRVKDIPVVETCYRET-LHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPI 242 (460)
Q Consensus 165 ~p~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~v 242 (460)
.+.... .....+|+++.++..+++......... +...+.+..+....++.+++|||.+||...++.+++ ..|+++|
T Consensus 151 ~~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--~~~v~~V 228 (456)
T PLN02210 151 FPDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD--LKPVIPI 228 (456)
T ss_pred CCcccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh--cCCEEEE
Confidence 121110 111236777767777777533222221 223333444455678899999999999999988776 3579999
Q ss_pred CCCCcCC----CC----CCc--ccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCC
Q 040486 243 GPFHKFF----SA----SSS--SLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPG 312 (460)
Q Consensus 243 G~l~~~~----~~----~~~--~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (460)
||++... .. .+. ..+..++++.+|++.++++++|||||||....+.+++++++.+++.++++|||+++..
T Consensus 229 GPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~ 308 (456)
T PLN02210 229 GPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPK 308 (456)
T ss_pred cccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 9997421 11 000 0123445688999998889999999999999999999999999999999999999753
Q ss_pred ccCCCccCCCCchhHHhhc-CCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHh
Q 040486 313 LVRGAEWIEPLPQGFLETL-DGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVS 391 (460)
Q Consensus 313 ~~~~~~~~~~lp~~~~~~~-~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~ 391 (460)
. ....+..+.++. ++++++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++
T Consensus 309 ~------~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~ 382 (456)
T PLN02210 309 E------KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLV 382 (456)
T ss_pred c------cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHH
Confidence 2 112345666776 488888999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcceeeeCC-----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 392 DVWKVGLHLER-----KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 392 ~~~G~g~~~~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+.+|+|+.+.. .++.++|+++|+++|.+++++.+|+||++|++..++|+.+||||.+++++|++.+.
T Consensus 383 ~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 383 DVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 63599999853 48999999999999988667889999999999999999999999999999999875
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2e-62 Score=482.80 Aligned_cols=435 Identities=29% Similarity=0.452 Sum_probs=335.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCCCCC----C----C---CC-CCCeeEEecCCCCCCcc
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKG----FSITIIHTNFNSP----N----P---SN-YPHFTFCSIEDSLSETE 76 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~G----h~Vt~~~~~~~~~----~----~---~~-~~g~~~~~~~~~~~~~~ 76 (460)
.+.||+++|++++||++|++.||+.|+.+| +.|||++++.+.. . . .. ..++++..+|++.++..
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 467999999999999999999999999997 7999999875422 0 0 01 12599999996542211
Q ss_pred cccccHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhc
Q 040486 77 ASTADLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAF 156 (460)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 156 (460)
..+...++..+...+.+.+++.+..+. .+++|||+|.+.+|+..+|+++|||++.+++++++.++.+.+.
T Consensus 82 --~e~~~~~~~~~~~~~~~~l~~~L~~l~--------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~ 151 (480)
T PLN00164 82 --AAGVEEFISRYIQLHAPHVRAAIAGLS--------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRL 151 (480)
T ss_pred --cccHHHHHHHHHHhhhHHHHHHHHhcC--------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhh
Confidence 112334455555566666766666552 3579999999999999999999999999999999988887765
Q ss_pred chhhccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcC-
Q 040486 157 PVLSQKGYFPIRDSQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDF- 235 (460)
Q Consensus 157 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~- 235 (460)
+........+.........+|+++.++..+++.......+.....+....+...+++.+++|||.+||+..++.++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 231 (480)
T PLN00164 152 PALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRC 231 (480)
T ss_pred hhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccc
Confidence 4321111001111001123788877888888854422222223333344455678889999999999999998887642
Q ss_pred -----CCCccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEc
Q 040486 236 -----PIPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVR 310 (460)
Q Consensus 236 -----~~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 310 (460)
.++++.|||+...... ....+.++++.+||+.+++++||||||||....+.+++.+++.+|+.++++|||++.
T Consensus 232 ~~~~~~~~v~~vGPl~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~ 309 (480)
T PLN00164 232 TPGRPAPTVYPIGPVISLAFT--PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLR 309 (480)
T ss_pred cccCCCCceEEeCCCcccccc--CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1469999999843211 011234456999999998899999999999889999999999999999999999998
Q ss_pred CCccCC------CccCCCCchhHHhhcCCCCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccch
Q 040486 311 PGLVRG------AEWIEPLPQGFLETLDGRGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQ 383 (460)
Q Consensus 311 ~~~~~~------~~~~~~lp~~~~~~~~~~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 383 (460)
.....+ .+....+|+++.++.++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 310 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ 389 (480)
T PLN00164 310 GPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQ 389 (480)
T ss_pred CCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccc
Confidence 542100 0101238899999999998887 899999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhcceeeeCC------ccCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 040486 384 MVNARYVSDVWKVGLHLER------KLERGEVERTIRRVMTEA--EGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLIS 455 (460)
Q Consensus 384 ~~na~~v~~~~G~g~~~~~------~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 455 (460)
+.||+++.+.+|+|+.+.. ..+.++|.++|+++|.|. ++..+|++|+++++++++++.+|||+.+++++|++
T Consensus 390 ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~ 469 (480)
T PLN00164 390 HLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAR 469 (480)
T ss_pred hhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999887443799999852 268999999999999863 47899999999999999999999999999999999
Q ss_pred HHHc
Q 040486 456 YILS 459 (460)
Q Consensus 456 ~~~~ 459 (460)
.+.+
T Consensus 470 ~~~~ 473 (480)
T PLN00164 470 EIRH 473 (480)
T ss_pred HHHh
Confidence 9874
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-62 Score=485.42 Aligned_cols=435 Identities=29% Similarity=0.477 Sum_probs=329.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-------CC---C--CCCeeEEecCCCCCCccccc
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKG--FSITIIHTNFNSPN-------PS---N--YPHFTFCSIEDSLSETEAST 79 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~G--h~Vt~~~~~~~~~~-------~~---~--~~g~~~~~~~~~~~~~~~~~ 79 (460)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+... .. . .++++++.+|++.+.... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE-D 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc-c
Confidence 58999999999999999999999999998 88999999866431 11 0 236999999876542211 1
Q ss_pred ccHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchh
Q 040486 80 ADLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVL 159 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 159 (460)
.. +..+...+...+++.++++.....+....+.+|||+|.+++|+..+|+++|||++.+++++++.++.+.+.+..
T Consensus 81 ~~----~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~ 156 (481)
T PLN02554 81 PT----FQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQML 156 (481)
T ss_pred hH----HHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhh
Confidence 12 22233444555666666654321000001248999999999999999999999999999999999888775543
Q ss_pred hccCCCC---CCCCCCCccCCCCC-CCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhc-
Q 040486 160 SQKGYFP---IRDSQSEAPVPELP-PLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQD- 234 (460)
Q Consensus 160 ~~~~~~p---~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~- 234 (460)
......+ ..+......+|++. .++..+++..... ......+.+....+..++++++||+.+||......+...
T Consensus 157 ~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~ 234 (481)
T PLN02554 157 YDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSS 234 (481)
T ss_pred ccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcc
Confidence 2111011 11111112367763 6777777643321 122344445555677899999999999999888877653
Q ss_pred -CCCCccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCc
Q 040486 235 -FPIPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGL 313 (460)
Q Consensus 235 -~~~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (460)
..++++.|||+............+.+.++.+|++.+++++||||||||+...+.+++++++.++++++++|||+++...
T Consensus 235 ~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~ 314 (481)
T PLN02554 235 GDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRAS 314 (481)
T ss_pred cCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 2357999999943221100000123346999999988889999999999888999999999999999999999997531
Q ss_pred cC------C--CccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhh
Q 040486 314 VR------G--AEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMV 385 (460)
Q Consensus 314 ~~------~--~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~ 385 (460)
.. + ......+|++|+++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.
T Consensus 315 ~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~ 394 (481)
T PLN02554 315 PNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKF 394 (481)
T ss_pred ccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchh
Confidence 10 0 000122699999999999999999999999999999999999999999999999999999999999999
Q ss_pred hH-HHHhhhhcceeeeC------------CccCHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 040486 386 NA-RYVSDVWKVGLHLE------------RKLERGEVERTIRRVMT-EAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLE 451 (460)
Q Consensus 386 na-~~v~~~~G~g~~~~------------~~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~ 451 (460)
|| .+++. +|+|+.++ ..++.++|.++|+++|. | ++||+||+++++++++++.+|||+.++++
T Consensus 395 Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGss~~~l~ 470 (481)
T PLN02554 395 NAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGSSHTALK 470 (481)
T ss_pred hHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 99 55788 79999985 15799999999999997 6 89999999999999999999999999999
Q ss_pred HHHHHHHc
Q 040486 452 SLISYILS 459 (460)
Q Consensus 452 ~~~~~~~~ 459 (460)
+|++.+.+
T Consensus 471 ~lv~~~~~ 478 (481)
T PLN02554 471 KFIQDVTK 478 (481)
T ss_pred HHHHHHHh
Confidence 99999875
No 13
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.8e-62 Score=476.50 Aligned_cols=427 Identities=29% Similarity=0.467 Sum_probs=333.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCC-CC-CCC---CCCCeeEEecCCCCCCcccc-cccHHHH
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYS-KGFSITIIHTNFN-SP-NPS---NYPHFTFCSIEDSLSETEAS-TADLVAL 85 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~-~Gh~Vt~~~~~~~-~~-~~~---~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 85 (460)
.+.||+++|++++||++|++.||+.|+. +|+.|||++++.+ .. ... ..++++|+.++++++.+... ..+....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~ 81 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNR 81 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHH
Confidence 3469999999999999999999999996 7999999999854 22 111 11369999999888765422 3345556
Q ss_pred HHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCC
Q 040486 86 LSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYF 165 (460)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (460)
+..+...+.+.+.+++.++.... .+++|||+|.+.+|+..+|+++|||++.+++++++.++.+.+.....
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~-----~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~----- 151 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGD-----SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN----- 151 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccC-----CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC-----
Confidence 66777788888888888775321 24699999999999999999999999999999999888776543210
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCcccc--cchhHHHHHHHHHhhcc--cccEEEEcChhHhhHHHHHHhhhcCCCCccc
Q 040486 166 PIRDSQSEAPVPELPPLRVKDIPVVETC--YRETLHRLVTEATNQMK--VSSGCIWNSLQDLELASLTKFHQDFPIPMFP 241 (460)
Q Consensus 166 p~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~ 241 (460)
.....+|+++.++..+++..... ........+.+..+... .++.+++|||.+||...++.++. .|++.
T Consensus 152 -----~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~ 223 (455)
T PLN02152 152 -----NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVA 223 (455)
T ss_pred -----CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEE
Confidence 01124677777778888754321 12222344434444332 24689999999999999888864 47999
Q ss_pred cCCCCcCCC--CCC-cc--c-ccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccC
Q 040486 242 IGPFHKFFS--ASS-SS--L-LAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVR 315 (460)
Q Consensus 242 vG~l~~~~~--~~~-~~--~-~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 315 (460)
|||+..... ... .. . ...+.++.+||+.+++++||||||||...++.+++++++.+|+.++++|||++......
T Consensus 224 VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~ 303 (455)
T PLN02152 224 VGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNR 303 (455)
T ss_pred EcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 999975321 100 01 1 12334689999998888999999999999999999999999999999999999753110
Q ss_pred -----CC-ccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHH
Q 040486 316 -----GA-EWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARY 389 (460)
Q Consensus 316 -----~~-~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 389 (460)
.. .....+|++|+++.++|+++.+|+||.+||+|+++++||||||+||+.||+++|||+|++|+++||+.||++
T Consensus 304 ~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~ 383 (455)
T PLN02152 304 EAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKL 383 (455)
T ss_pred ccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHH
Confidence 00 001135789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcceeeeC--C--ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 390 VSDVWKVGLHLE--R--KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 390 v~~~~G~g~~~~--~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+++.||+|+.+. . ..+.++|+++|+++|+| ++..||+||++++++.+++..+|||+.+++++|++.|+
T Consensus 384 ~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 384 LEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred HHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 987456766664 2 36999999999999975 23579999999999999999999999999999999874
No 14
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1e-62 Score=477.62 Aligned_cols=426 Identities=27% Similarity=0.458 Sum_probs=324.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCCCCCC--------CCCCCCeeEEecCCCCCCcc--cc
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKG--FSITI--IHTNFNSPN--------PSNYPHFTFCSIEDSLSETE--AS 78 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~G--h~Vt~--~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~--~~ 78 (460)
..-||+++|++++||++|++.||+.|+.+| +.||+ +.++.+... ....++++++.+|.+.+.+. ..
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 467999999999999999999999999998 45555 555443211 11124799999997654222 22
Q ss_pred cccHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcch
Q 040486 79 TADLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPV 158 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 158 (460)
..+....+......+...+.+.+.++... .+++|||+|.+.+|+..+|+++|||++.+++++++.++.+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~ 155 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRN------FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPT 155 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCC------CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHh
Confidence 22333344445556667777777766321 245999999999999999999999999999999999888776443
Q ss_pred hhccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCC-C
Q 040486 159 LSQKGYFPIRDSQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFP-I 237 (460)
Q Consensus 159 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~ 237 (460)
.......+.........+|+++.++..+++.............+.+....+..++.+++|||.+||...++.+++.+. +
T Consensus 156 ~~~~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~ 235 (451)
T PLN03004 156 IDETTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFR 235 (451)
T ss_pred ccccccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCC
Confidence 211100000001111346888888888888654323333344455555566778899999999999999998877533 5
Q ss_pred CccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCC
Q 040486 238 PMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGA 317 (460)
Q Consensus 238 p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 317 (460)
|++.|||+.......... ...+.++.+||+++++++||||||||...++.+++++++.+|+.++++|||++........
T Consensus 236 ~v~~vGPl~~~~~~~~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~ 314 (451)
T PLN03004 236 NIYPIGPLIVNGRIEDRN-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEK 314 (451)
T ss_pred CEEEEeeeccCccccccc-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccc
Confidence 799999997432110011 1123458899999888999999999999999999999999999999999999985311000
Q ss_pred --ccCCC-CchhHHhhcCCCCcc-ccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhh
Q 040486 318 --EWIEP-LPQGFLETLDGRGHM-VKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDV 393 (460)
Q Consensus 318 --~~~~~-lp~~~~~~~~~~~~v-~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~ 393 (460)
..... +|++|++|.++++.+ .+|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.||+++++.
T Consensus 315 ~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~ 394 (451)
T PLN03004 315 TELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDE 394 (451)
T ss_pred cccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHH
Confidence 00222 899999999987765 59999999999999999999999999999999999999999999999999999753
Q ss_pred hcceeeeCC----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 040486 394 WKVGLHLER----KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQ 448 (460)
Q Consensus 394 ~G~g~~~~~----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~ 448 (460)
+|+|+.++. ..+.++|+++|+++|.| ++||+++++++++.+.|+.+||||.+
T Consensus 395 ~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 395 IKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 699999964 46999999999999998 89999999999999999999999875
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.3e-62 Score=473.47 Aligned_cols=434 Identities=26% Similarity=0.428 Sum_probs=331.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCCCCC------CCC---CCCeeEEecCCCCCCcc-cccc
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSK-GFSITIIHTNFNSPN------PSN---YPHFTFCSIEDSLSETE-ASTA 80 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~-Gh~Vt~~~~~~~~~~------~~~---~~g~~~~~~~~~~~~~~-~~~~ 80 (460)
+++.||+++|++++||++|++.||+.|+.+ |..|||++++.+... ... .+++++..+|....++. ....
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCc
Confidence 456799999999999999999999999987 999999988754421 111 12589999984322111 0001
Q ss_pred cHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCc-eEEEecccHHHHHHHHhcchh
Q 040486 81 DLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLS-RIVLRTNSVSSFLVFAAFPVL 159 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~ 159 (460)
+....+..+...+...+++.+.++. .+|+|||+|.+.+|+..+|+++||| .+.+++++++.++.+.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~--------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~ 152 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK--------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVL 152 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC--------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhh
Confidence 3333344444566677777776654 3589999999999999999999999 577878877777666654432
Q ss_pred hccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcC----
Q 040486 160 SQKGYFPIRDSQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDF---- 235 (460)
Q Consensus 160 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---- 235 (460)
................+|+++.++..+++.............+.+..+....++++++|||.+||+..++.+++.+
T Consensus 153 ~~~~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~ 232 (470)
T PLN03015 153 DTVVEGEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNR 232 (470)
T ss_pred hcccccccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhccccc
Confidence 1110000001011124788888888888853322222222233344455788999999999999999998887742
Q ss_pred --CCCccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCc
Q 040486 236 --PIPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGL 313 (460)
Q Consensus 236 --~~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (460)
.+|++.|||+..... ....+.++.+||+.+++++||||||||...++.+++.+++.+|+.++++|||++....
T Consensus 233 ~~~~~v~~VGPl~~~~~-----~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~ 307 (470)
T PLN03015 233 VMKVPVYPIGPIVRTNV-----HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPA 307 (470)
T ss_pred ccCCceEEecCCCCCcc-----cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCc
Confidence 257999999984211 1112346999999988899999999999999999999999999999999999997421
Q ss_pred c-------CCCccCCCCchhHHhhcCCCCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhh
Q 040486 314 V-------RGAEWIEPLPQGFLETLDGRGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMV 385 (460)
Q Consensus 314 ~-------~~~~~~~~lp~~~~~~~~~~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~ 385 (460)
. +..+..+.+|++|.+|.+++++++ +|+||.+||+|+++++|||||||||+.||+++|||||++|+++||+.
T Consensus 308 ~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~ 387 (470)
T PLN03015 308 SYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWM 387 (470)
T ss_pred cccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHH
Confidence 1 000012358999999999999765 99999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcceeeeC----C-ccCHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 386 NARYVSDVWKVGLHLE----R-KLERGEVERTIRRVMTE--AEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 386 na~~v~~~~G~g~~~~----~-~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
||+++++.+|+|+.+. . .++.++|.++|+++|.+ ++++.+|+||++++++.++|+.+||||.++++++++++.
T Consensus 388 na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 388 NATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 9999844389999995 2 58999999999999963 457899999999999999999999999999999998863
No 16
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.8e-62 Score=478.81 Aligned_cols=439 Identities=27% Similarity=0.490 Sum_probs=322.8
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC------CC--CCeeEEecC-----CCCCCcc
Q 040486 10 HQKKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPS------NY--PHFTFCSIE-----DSLSETE 76 (460)
Q Consensus 10 ~~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~------~~--~g~~~~~~~-----~~~~~~~ 76 (460)
+..++.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... .. ..++|+.+| +++|++.
T Consensus 4 ~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~ 83 (491)
T PLN02534 4 SKAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGC 83 (491)
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCc
Confidence 3445689999999999999999999999999999999999987653211 10 138999888 5787654
Q ss_pred cccccHH--HHHHHH---HHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHH
Q 040486 77 ASTADLV--ALLSLL---NVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFL 151 (460)
Q Consensus 77 ~~~~~~~--~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 151 (460)
+...+.. .++..+ ...+...+.+++... . .+|+|||+|.+.+|+..+|+++|||++.+++++++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~----~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~ 155 (491)
T PLN02534 84 ENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA----K----PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLL 155 (491)
T ss_pred cccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc----C----CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHH
Confidence 3322211 222222 223334444444332 1 46899999999999999999999999999999888776
Q ss_pred HHHhcchhhccCCCCCCCCCCCccCCCCCC---CCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHH
Q 040486 152 VFAAFPVLSQKGYFPIRDSQSEAPVPELPP---LRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASL 228 (460)
Q Consensus 152 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 228 (460)
....+..... ..+.........+|+++. ++..+++...... .....+...+......++.+++|||.+||+..+
T Consensus 156 ~~~~~~~~~~--~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l 232 (491)
T PLN02534 156 SSHNIRLHNA--HLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCA 232 (491)
T ss_pred HHHHHHHhcc--cccCCCCCceeecCCCCccccccHHHCChhhcCc-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHH
Confidence 5432211111 111111111223566652 5556665432111 112222222333334577899999999999999
Q ss_pred HHhhhcCCCCccccCCCCcCCCCC------CcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCC
Q 040486 229 TKFHQDFPIPMFPIGPFHKFFSAS------SSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSK 302 (460)
Q Consensus 229 ~~~~~~~~~p~~~vG~l~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~ 302 (460)
+.+++.++.|++.|||+....... +......++++.+||+.+++++||||||||......+++.+++.+|+.++
T Consensus 233 ~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~ 312 (491)
T PLN02534 233 EAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASK 312 (491)
T ss_pred HHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 998876667899999997532110 00000123458899999988999999999999999999999999999999
Q ss_pred CCEEEEEcCCccCCCccCCCCchhHHhhcCCCCc-cccccChhhhhccCCCcccccccCchhHHHHHhhCCceecccccc
Q 040486 303 VPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGH-MVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFG 381 (460)
Q Consensus 303 ~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 381 (460)
++|||++..+..........+|++|.++..+++. +.+|+||.+||+|+++++||||||+||++||+++|||||++|++.
T Consensus 313 ~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~ 392 (491)
T PLN02534 313 KPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFA 392 (491)
T ss_pred CCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccc
Confidence 9999999843210000001368999988765555 459999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhhhcceeeeC-------------C-ccCHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHhcCCC
Q 040486 382 DQMVNARYVSDVWKVGLHLE-------------R-KLERGEVERTIRRVMT--EAEGQEIRVRIMILKEKLNLCLIQGGS 445 (460)
Q Consensus 382 DQ~~na~~v~~~~G~g~~~~-------------~-~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~g~ 445 (460)
||+.||+++++.||+|+.+. . ..+.++|+++|+++|. ++++..+|+||++|+++.++++.+|||
T Consensus 393 dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGS 472 (491)
T PLN02534 393 EQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGS 472 (491)
T ss_pred cHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999876589998773 1 2689999999999997 455789999999999999999999999
Q ss_pred hHHHHHHHHHHHHc
Q 040486 446 SYQSLESLISYILS 459 (460)
Q Consensus 446 ~~~~~~~~~~~~~~ 459 (460)
|.+++++|++.|.+
T Consensus 473 S~~nl~~fv~~i~~ 486 (491)
T PLN02534 473 SHINLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
No 17
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.4e-62 Score=474.94 Aligned_cols=419 Identities=22% Similarity=0.344 Sum_probs=313.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC----CCeeEEec--C--CCCCCcccccccHHH
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNY----PHFTFCSI--E--DSLSETEASTADLVA 84 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~----~g~~~~~~--~--~~~~~~~~~~~~~~~ 84 (460)
.++||+++|++++||++|++.||+.|+.+||+|||++++.+....... .++++..+ | ++++.+.+...+...
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~ 82 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPI 82 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhH
Confidence 468999999999999999999999999999999999998665433211 24556554 3 466655433223322
Q ss_pred HHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCC
Q 040486 85 LLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGY 164 (460)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 164 (460)
.+..+.......+.+.++++.+. .++||||+| ++.|+..+|+++|||++.+++++++.++ +.+.+. ..
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~ 150 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GK 150 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----cc
Confidence 22222222223334444444432 368999999 5889999999999999999999887654 333221 00
Q ss_pred CCCCCCCCCccCCCCCC----CCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCcc
Q 040486 165 FPIRDSQSEAPVPELPP----LRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMF 240 (460)
Q Consensus 165 ~p~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~ 240 (460)
.. ..+|+++. ++..+++... .....+......+.+....++.+++|||.+||+..++.+++.+.++++
T Consensus 151 ~~-------~~~pglp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~ 222 (442)
T PLN02208 151 LG-------VPPPGYPSSKVLFRENDAHALA-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVL 222 (442)
T ss_pred cC-------CCCCCCCCcccccCHHHcCccc-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEE
Confidence 00 01244432 3444444321 111112223333434567889999999999999999988876667799
Q ss_pred ccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccC
Q 040486 241 PIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWI 320 (460)
Q Consensus 241 ~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 320 (460)
.|||++..... ..+.++++.+||+.+++++||||||||...++.+++.+++.+++..+.+++|+++.+...... .
T Consensus 223 ~vGpl~~~~~~----~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~-~ 297 (442)
T PLN02208 223 LTGPMFPEPDT----SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTV-Q 297 (442)
T ss_pred EEeecccCcCC----CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccch-h
Confidence 99999865321 112345699999998889999999999999899999999999888888899988854211101 2
Q ss_pred CCCchhHHhhcCCCCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceee
Q 040486 321 EPLPQGFLETLDGRGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLH 399 (460)
Q Consensus 321 ~~lp~~~~~~~~~~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~ 399 (460)
..+|++|++++++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.
T Consensus 298 ~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~ 377 (442)
T PLN02208 298 EGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVE 377 (442)
T ss_pred hhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEE
Confidence 458999999998877766 9999999999999999999999999999999999999999999999999986653699999
Q ss_pred eCC-c---cCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 040486 400 LER-K---LERGEVERTIRRVMTEA--EGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILSF 460 (460)
Q Consensus 400 ~~~-~---~~~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
++. + ++.++|.++|+++|.|+ +++.+|++++++++++. ++|||.+++++|++.++++
T Consensus 378 ~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 378 VSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred eccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHh
Confidence 976 4 89999999999999864 37889999999999986 6899999999999998763
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=7.4e-62 Score=481.44 Aligned_cols=435 Identities=29% Similarity=0.482 Sum_probs=321.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--------CC----CeeEEecC---CCCCCccc
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN--------YP----HFTFCSIE---DSLSETEA 77 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~--------~~----g~~~~~~~---~~~~~~~~ 77 (460)
.++||+++|+|++||++|++.||+.|+.||++|||++++.+...+.. .+ .+.+.++| .++|++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 46899999999999999999999999999999999999876532211 11 34455566 35665432
Q ss_pred ccc--------cHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHH
Q 040486 78 STA--------DLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSS 149 (460)
Q Consensus 78 ~~~--------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 149 (460)
... +...++..+. .....+.+.++++.+. .+|||||+|.+++|+..+|+++|||++.+++++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~ 156 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFS 156 (482)
T ss_pred cccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHH
Confidence 211 1223333333 3334455556665543 369999999999999999999999999999998877
Q ss_pred HHHHHhcchhhccCCCCCCCCCCCccCCCCC---CCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHH
Q 040486 150 FLVFAAFPVLSQKGYFPIRDSQSEAPVPELP---PLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELA 226 (460)
Q Consensus 150 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 226 (460)
.+..............+... ....+|+++ .++..+++.. .....+...+....+...+++.+++||+.+||.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~--~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~ 232 (482)
T PLN03007 157 LCASYCIRVHKPQKKVASSS--EPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESA 232 (482)
T ss_pred HHHHHHHHhcccccccCCCC--ceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHH
Confidence 66544322211111111000 011245543 2333333321 1222344555566667788899999999999998
Q ss_pred HHHHhhhcCCCCccccCCCCcCCCCC------CcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHc
Q 040486 227 SLTKFHQDFPIPMFPIGPFHKFFSAS------SSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLAN 300 (460)
Q Consensus 227 ~~~~~~~~~~~p~~~vG~l~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~ 300 (460)
..+.+++....++++|||+....... +......+.++.+|++.++++++|||||||+...+.+++.+++.+|+.
T Consensus 233 ~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~ 312 (482)
T PLN03007 233 YADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEG 312 (482)
T ss_pred HHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHH
Confidence 88888775556799999986432110 001111235589999998889999999999988889999999999999
Q ss_pred CCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCc-cccccChhhhhccCCCcccccccCchhHHHHHhhCCceecccc
Q 040486 301 SKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGH-MVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPC 379 (460)
Q Consensus 301 ~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 379 (460)
++++|||+++...... +....+|++++++..++.. +.+|+||.+||+|+++++||||||+||++||+++|||||++|+
T Consensus 313 ~~~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~ 391 (482)
T PLN03007 313 SGQNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPV 391 (482)
T ss_pred CCCCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccc
Confidence 9999999998642110 1023489999998876554 5599999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHhhhhcceeee--------CC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 040486 380 FGDQMVNARYVSDVWKVGLHL--------ER-KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSL 450 (460)
Q Consensus 380 ~~DQ~~na~~v~~~~G~g~~~--------~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 450 (460)
++||+.||+++++.+++|+.+ +. .++.++|.++|+++|.|+++..||+||+++++++++++.+||||.+++
T Consensus 392 ~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l 471 (482)
T PLN03007 392 GAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDL 471 (482)
T ss_pred hhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999886423455443 33 589999999999999986677999999999999999999999999999
Q ss_pred HHHHHHHHc
Q 040486 451 ESLISYILS 459 (460)
Q Consensus 451 ~~~~~~~~~ 459 (460)
++|++.+.+
T Consensus 472 ~~~v~~~~~ 480 (482)
T PLN03007 472 NKFMEELNS 480 (482)
T ss_pred HHHHHHHHh
Confidence 999999875
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=5.7e-62 Score=470.49 Aligned_cols=415 Identities=23% Similarity=0.357 Sum_probs=317.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC---CC-C--eeEEecC--CCCCCcccccccHH-
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN---YP-H--FTFCSIE--DSLSETEASTADLV- 83 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~---~~-g--~~~~~~~--~~~~~~~~~~~~~~- 83 (460)
-++||+++|++++||++|++.||+.|+.+|+.|||++++.+...... .+ + +.+.++| +++|.+.+...+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~ 83 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPV 83 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCCh
Confidence 46899999999999999999999999999999999999876532221 11 2 7777787 67776543321211
Q ss_pred H---HHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhh
Q 040486 84 A---LLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLS 160 (460)
Q Consensus 84 ~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 160 (460)
+ .+..........+.++++. .+|||||+|. ..|+..+|+++|||++.+++++++.++.+.. +.
T Consensus 84 ~~~~~~~~a~~~~~~~~~~~l~~----------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~-- 149 (453)
T PLN02764 84 TSADLLMSAMDLTRDQVEVVVRA----------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG-- 149 (453)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHh----------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--
Confidence 1 2222222333444444433 2589999995 8999999999999999999999988777653 11
Q ss_pred ccCCCCCCCCCCCccCCCCC----CCCCCCCCCccc----ccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhh
Q 040486 161 QKGYFPIRDSQSEAPVPELP----PLRVKDIPVVET----CYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFH 232 (460)
Q Consensus 161 ~~~~~p~~~~~~~~~~~~~~----~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 232 (460)
...+ ..+|+++ .++..+++.... ...+.....+.+..+.+..++.+++|||.+||...++.++
T Consensus 150 --~~~~-------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~ 220 (453)
T PLN02764 150 --GELG-------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIE 220 (453)
T ss_pred --ccCC-------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHH
Confidence 0000 1124443 234444442110 1111233444445456678889999999999999999887
Q ss_pred hcCCCCccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCC
Q 040486 233 QDFPIPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPG 312 (460)
Q Consensus 233 ~~~~~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (460)
+..++|++.|||+...... ....+.++.+|||.+++++||||||||...++.+++.+++.+|+..+.+++|+++..
T Consensus 221 ~~~~~~v~~VGPL~~~~~~----~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~ 296 (453)
T PLN02764 221 KHCRKKVLLTGPVFPEPDK----TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPP 296 (453)
T ss_pred hhcCCcEEEeccCccCccc----cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 7434579999999754211 011235689999999999999999999999999999999999999999999999853
Q ss_pred ccCCCccCCCCchhHHhhcCCCCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHh
Q 040486 313 LVRGAEWIEPLPQGFLETLDGRGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVS 391 (460)
Q Consensus 313 ~~~~~~~~~~lp~~~~~~~~~~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~ 391 (460)
...... .+.+|++|+++++++++++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||++++
T Consensus 297 ~~~~~~-~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~ 375 (453)
T PLN02764 297 RGSSTI-QEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS 375 (453)
T ss_pred CCCcch-hhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH
Confidence 211111 2459999999999999887 99999999999999999999999999999999999999999999999999996
Q ss_pred hhhcceeeeCC----ccCHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 392 DVWKVGLHLER----KLERGEVERTIRRVMTE--AEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 392 ~~~G~g~~~~~----~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+.+|+|+.+.. .++.++|+++|+++|.+ ++++.+|+++++++++++ ++||+.+++++|++.+.+
T Consensus 376 ~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 376 DELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQD 445 (453)
T ss_pred HHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHH
Confidence 43799998753 48999999999999987 347889999999999998 799999999999999875
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4e-61 Score=474.74 Aligned_cols=442 Identities=26% Similarity=0.429 Sum_probs=326.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCCCCC---------CCCCCCCeeEEecCCCCCC-cccc
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGF---SITIIHTNFNSP---------NPSNYPHFTFCSIEDSLSE-TEAS 78 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh---~Vt~~~~~~~~~---------~~~~~~g~~~~~~~~~~~~-~~~~ 78 (460)
+++.||+++|++++||++|++.||+.|+.+|. .||++.+..+.. .....++++|+.+|+...+ +.+.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 35679999999999999999999999999983 567776543221 0111246999999865421 1110
Q ss_pred -cccHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcc
Q 040486 79 -TADLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFP 157 (460)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 157 (460)
.......+..+...+...+++.++++......+++.+++|||+|.+.+|+..+|+++|||++.+++++++.++.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 1112223344445566667777776643210000014699999999999999999999999999999998888776544
Q ss_pred hhhccCCCC--CCCCCCCccCCCC-CCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhc
Q 040486 158 VLSQKGYFP--IRDSQSEAPVPEL-PPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQD 234 (460)
Q Consensus 158 ~~~~~~~~p--~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 234 (460)
......... .........+|++ ..++..+++...... . ....+.+..+...+++.+++|||.+||+..++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~-~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~ 238 (475)
T PLN02167 161 ERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK-E-SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRL 238 (475)
T ss_pred HhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc-c-hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhh
Confidence 321110000 0000111236777 356666766432111 1 1223334445567789999999999999999888663
Q ss_pred CC--CCccccCCCCcCCCCCCcccc--cCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEc
Q 040486 235 FP--IPMFPIGPFHKFFSASSSSLL--AHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVR 310 (460)
Q Consensus 235 ~~--~p~~~vG~l~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 310 (460)
.. +++++|||++...... .... ..+.++.+||+.++.+++|||||||....+.+++.+++.+++.++++|||+++
T Consensus 239 ~~~~p~v~~vGpl~~~~~~~-~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~ 317 (475)
T PLN02167 239 PENYPPVYPVGPILSLKDRT-SPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIR 317 (475)
T ss_pred cccCCeeEEecccccccccc-CCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 21 4699999998643210 0111 12346899999988889999999999888999999999999999999999997
Q ss_pred CCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHH-
Q 040486 311 PGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARY- 389 (460)
Q Consensus 311 ~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~- 389 (460)
.......+....+|++|+++.++++++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 318 ~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~ 397 (475)
T PLN02167 318 TNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTM 397 (475)
T ss_pred cCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHH
Confidence 5321110112358999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HhhhhcceeeeCC--------ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 390 VSDVWKVGLHLER--------KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 390 v~~~~G~g~~~~~--------~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
++. +|+|+.+.. .++.++|+++|+++|.++ ..||++|+++++++++++.+|||+.+++++|++.|.+
T Consensus 398 ~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 398 VKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 667 799998852 369999999999999862 4899999999999999999999999999999999874
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.6e-61 Score=467.54 Aligned_cols=418 Identities=22% Similarity=0.326 Sum_probs=311.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC---C-CCeeEEec--C--CCCCCcccccccHH
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN---Y-PHFTFCSI--E--DSLSETEASTADLV 83 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~---~-~g~~~~~~--~--~~~~~~~~~~~~~~ 83 (460)
.++.||+++|++++||++|++.||+.|+.+|++|||++++.+...... . ++++|..+ | +++|++.+...+..
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~ 81 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLP 81 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccch
Confidence 356899999999999999999999999999999999999876533221 1 24777544 4 57776543322222
Q ss_pred HHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccC
Q 040486 84 ALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKG 163 (460)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
.............+...++.+.+. .+|||||+|. ++|+..+|+++|||++.+++++++.++.+.+ +.. ...
T Consensus 82 ~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~~-~~~ 152 (446)
T PLN00414 82 NSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PRA-ELG 152 (446)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cHh-hcC
Confidence 211222222223444455554432 3689999995 8999999999999999999999988877654 110 000
Q ss_pred CCCCCCCCCCccCCCCCC----CCCCCC--CCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCC
Q 040486 164 YFPIRDSQSEAPVPELPP----LRVKDI--PVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPI 237 (460)
Q Consensus 164 ~~p~~~~~~~~~~~~~~~----~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 237 (460)
.+ +|+++. ++..+. +... .. ....+.+..+...+++.+++|||.+||...++.++..++.
T Consensus 153 -~~---------~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 218 (446)
T PLN00414 153 -FP---------PPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQR 218 (446)
T ss_pred -CC---------CCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCC
Confidence 00 122221 111111 1111 00 1233444445567789999999999999999988875556
Q ss_pred CccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCC
Q 040486 238 PMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGA 317 (460)
Q Consensus 238 p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 317 (460)
|++.|||+...... ......++++.+|||.+++++||||||||....+.+++.+++.+|+..+.+|+|++........
T Consensus 219 ~v~~VGPl~~~~~~--~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~ 296 (446)
T PLN00414 219 KVLLTGPMLPEPQN--KSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSST 296 (446)
T ss_pred CeEEEcccCCCccc--ccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCccc
Confidence 79999999753311 0011123458899999999999999999999999999999999999999999999975321111
Q ss_pred ccCCCCchhHHhhcCCCCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcc
Q 040486 318 EWIEPLPQGFLETLDGRGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKV 396 (460)
Q Consensus 318 ~~~~~lp~~~~~~~~~~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 396 (460)
. .+.+|++|+++.++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.+|+
T Consensus 297 ~-~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~ 375 (446)
T PLN00414 297 V-QEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEV 375 (446)
T ss_pred c-hhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCe
Confidence 1 2359999999999999987 8999999999999999999999999999999999999999999999999999633799
Q ss_pred eeeeCC----ccCHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 397 GLHLER----KLERGEVERTIRRVMTE--AEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 397 g~~~~~----~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
|+.+.. .++.++|+++++++|.| ++++.+|++++++++.+. +.||+..++++|++.+++
T Consensus 376 g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~----~~gg~ss~l~~~v~~~~~ 440 (446)
T PLN00414 376 SVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV----SPGLLSGYADKFVEALEN 440 (446)
T ss_pred EEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHH
Confidence 999964 38999999999999976 337789999999999986 445533558999998865
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.3e-51 Score=405.94 Aligned_cols=406 Identities=17% Similarity=0.167 Sum_probs=282.3
Q ss_pred CCcEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCeeEEecCCCCCCcc---ccc------c-
Q 040486 13 KGRRLILF-PLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPN-PSNYPHFTFCSIEDSLSETE---AST------A- 80 (460)
Q Consensus 13 ~~~~vl~~-~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~---~~~------~- 80 (460)
...||+.+ |.++.+|+.-+.+|+++|++|||+||++++...... .....+++.+.++....... ... .
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGV 98 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhh
Confidence 34668765 889999999999999999999999999987532111 11235677666641111000 000 0
Q ss_pred --cH----HHHHHHHHHhcchhHHH-HHHHHhcccccccCCCeeEEEecCCchhHHHHHHHc-CCceEEEecccHHHHHH
Q 040486 81 --DL----VALLSLLNVQCVVPFRN-CLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESL-KLSRIVLRTNSVSSFLV 152 (460)
Q Consensus 81 --~~----~~~~~~~~~~~~~~l~~-~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~~~ 152 (460)
+. ......+...|...+.+ .+.++.+..+ .++|+||+|.+..|+..+|+.+ ++|.|.++++.......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~----~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 99 VADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN----NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC----CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH
Confidence 00 01112223455555543 3333332111 5799999999899999999999 99998887765543333
Q ss_pred HHhcchhhccCCCCCCC------CCCCccCCCCCCCCCCCCC--CcccccchhHHHHHH----HHHhhcccccEEEEcCh
Q 040486 153 FAAFPVLSQKGYFPIRD------SQSEAPVPELPPLRVKDIP--VVETCYRETLHRLVT----EATNQMKVSSGCIWNSL 220 (460)
Q Consensus 153 ~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~ 220 (460)
....+.|.+++|.|... +.+++|+.|+......... .......+...+.+. ...+..++.+.+++|+.
T Consensus 175 ~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~ 254 (507)
T PHA03392 175 ETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVH 254 (507)
T ss_pred HhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecC
Confidence 22222566677777643 4455555554311000000 000001111122222 13445567889999999
Q ss_pred hHhhHHHHHHhhhcCCCCccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEcccccc---CCHHHHHHHHHH
Q 040486 221 QDLELASLTKFHQDFPIPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAA---INETEFLEVAWG 297 (460)
Q Consensus 221 ~~l~~~~~~~~~~~~~~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~---~~~~~~~~~~~a 297 (460)
+.++++ + .+++++++|||++.+... ..+.++++.+|++.. ++++|||||||... .+.+.++.+++|
T Consensus 255 ~~~d~~-----r-p~~p~v~~vGgi~~~~~~----~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a 323 (507)
T PHA03392 255 PVFDNN-----R-PVPPSVQYLGGLHLHKKP----PQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRT 323 (507)
T ss_pred ccccCC-----C-CCCCCeeeecccccCCCC----CCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHH
Confidence 999986 3 234559999999875321 123345588999874 46899999999864 568899999999
Q ss_pred HHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceecc
Q 040486 298 LANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQ 377 (460)
Q Consensus 298 l~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 377 (460)
++++++++||++++.... ..+|+|+ ++.+|+||.+||+|+.+++||||||+||++||+++|||+|++
T Consensus 324 ~~~l~~~viw~~~~~~~~-----~~~p~Nv--------~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~i 390 (507)
T PHA03392 324 FKKLPYNVLWKYDGEVEA-----INLPANV--------LTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGL 390 (507)
T ss_pred HHhCCCeEEEEECCCcCc-----ccCCCce--------EEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEEC
Confidence 999999999999854311 1355665 899999999999998888899999999999999999999999
Q ss_pred ccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHH
Q 040486 378 PCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQG-GSSYQSLESL 453 (460)
Q Consensus 378 P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-g~~~~~~~~~ 453 (460)
|+++||+.||+|+++ .|+|+.++. +++.++|.++|+++++| ++||+||+++++.+++ +. .+.++++.-+
T Consensus 391 P~~~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~---~p~~~~~~av~~i 461 (507)
T PHA03392 391 PMMGDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRH---QPMTPLHKAIWYT 461 (507)
T ss_pred CCCccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 999999999999999 599999998 89999999999999999 9999999999999995 22 2455555444
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.7e-53 Score=430.10 Aligned_cols=384 Identities=25% Similarity=0.323 Sum_probs=229.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCeeEEecCCCCCCccc--ccc------------
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNP-SNYPHFTFCSIEDSLSETEA--STA------------ 80 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~--~~~------------ 80 (460)
||+++|. ++||+.++..|+++|++|||+||++++....... ....++++..++...+.... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 7888885 8899999999999999999999999885422211 12246677766644332210 000
Q ss_pred --cHHHHHH-------HHHHhcchhHHH--HHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHH
Q 040486 81 --DLVALLS-------LLNVQCVVPFRN--CLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSS 149 (460)
Q Consensus 81 --~~~~~~~-------~~~~~~~~~l~~--~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 149 (460)
.....+. .....|...+.+ +++.+.. .++|++|+|.+.+|+..+|+.+++|.+.+.++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~-------~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS-------EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH-------HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------hccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 1111111 111233222211 2223332 369999999999999999999999998865432211
Q ss_pred HHHHHhcchhhccCCCCCCC------CCCCccCCCCCCCCC-----CCCCCc-ccccchhHHHHHHHHHhhcccccEEEE
Q 040486 150 FLVFAAFPVLSQKGYFPIRD------SQSEAPVPELPPLRV-----KDIPVV-ETCYRETLHRLVTEATNQMKVSSGCIW 217 (460)
Q Consensus 150 ~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~-----~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 217 (460)
.......+.+..+++.|... +.+..|+.+...... ..+... .......+.. -....+.+.+.+.+++
T Consensus 154 ~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~ 232 (500)
T PF00201_consen 154 DLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGF-PFSFRELLSNASLVLI 232 (500)
T ss_dssp CCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS--GGGCHHHHHHHHHCCS
T ss_pred hhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhccc-ccccHHHHHHHHHHhh
Confidence 11111113444556655532 334444444320000 000000 0000000000 0001122334556678
Q ss_pred cChhHhhHHHHHHhhhcCCCCccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEcccccc-CCHHHHHHHHH
Q 040486 218 NSLQDLELASLTKFHQDFPIPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAA-INETEFLEVAW 296 (460)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~ 296 (460)
|+.+.++.|.+ . .+.+++||+++...+. ++ +.++.+|++...++++|||||||... .+.+..+.+++
T Consensus 233 ns~~~ld~prp-----~-~p~v~~vGgl~~~~~~----~l--~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~ 300 (500)
T PF00201_consen 233 NSHPSLDFPRP-----L-LPNVVEVGGLHIKPAK----PL--PEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAE 300 (500)
T ss_dssp STEEE----HH-----H-HCTSTTGCGC-S--------TC--HHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHH
T ss_pred hccccCcCCcc-----h-hhcccccCcccccccc----cc--ccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHH
Confidence 88888887632 1 3459999999876543 33 34588999875578999999999986 44555788999
Q ss_pred HHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceec
Q 040486 297 GLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMIC 376 (460)
Q Consensus 297 al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~ 376 (460)
++++++++|||++.+.. ...+|+|+ ++.+|+||.+||+|+++++||||||+||+.||+++|||+|+
T Consensus 301 ~~~~~~~~~iW~~~~~~------~~~l~~n~--------~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~ 366 (500)
T PF00201_consen 301 AFENLPQRFIWKYEGEP------PENLPKNV--------LIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLG 366 (500)
T ss_dssp HHHCSTTEEEEEETCSH------GCHHHTTE--------EEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE
T ss_pred HHhhCCCcccccccccc------cccccceE--------EEeccccchhhhhcccceeeeeccccchhhhhhhccCCccC
Confidence 99999999999998742 22344444 89999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 040486 377 QPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNL 438 (460)
Q Consensus 377 ~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~ 438 (460)
+|+++||+.||++++++ |+|+.++. ++|.+.|.++|+++|+| ++|++||+++++.+++
T Consensus 367 ~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 367 IPLFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLEN---PSYKENAKRLSSLFRD 425 (500)
T ss_dssp -GCSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHS---HHHHHHHHHHHHTTT-
T ss_pred CCCcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhc
Confidence 99999999999999995 99999998 99999999999999999 9999999999999986
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.7e-44 Score=353.31 Aligned_cols=378 Identities=17% Similarity=0.265 Sum_probs=260.1
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcc-c-c--cccHHHHHHHHHHhcch
Q 040486 20 FPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETE-A-S--TADLVALLSLLNVQCVV 95 (460)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~ 95 (460)
+.+|++||++|+++||++|+++||+|+|++++.+.+.... .|++|.+++....... . . ..+....+..+...+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAED 79 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-cCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999887776665 5999999986543311 0 0 02233334444343333
Q ss_pred hHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCCCCCcc
Q 040486 96 PFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDSQSEAP 175 (460)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 175 (460)
.+..+.+.+.. .+||+||+|.+++++..+|+.+|||+|.+++.+... ..++.+. .|.. ......
T Consensus 80 ~~~~l~~~~~~-------~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~----~~~~-~~~~~~ 143 (392)
T TIGR01426 80 VLPQLEEAYKG-------DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV----SPAG-EGSAEE 143 (392)
T ss_pred HHHHHHHHhcC-------CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccc----cccc-hhhhhh
Confidence 44333333332 579999999988899999999999999886542110 0001000 0100 000000
Q ss_pred CCCCCCCCCCCCCCcccccchhHHHHHHHHH-------hh-cccccEEEEcChhHhhHHHHHHhhhcCCCCccccCCCCc
Q 040486 176 VPELPPLRVKDIPVVETCYRETLHRLVTEAT-------NQ-MKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIGPFHK 247 (460)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~ 247 (460)
.. .....+ ........+...+.. .. .......+..+.+.|+++ +++++.+++++||+..
T Consensus 144 ~~----~~~~~~----~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~Gp~~~ 210 (392)
T TIGR01426 144 GA----IAERGL----AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GETFDDSFTFVGPCIG 210 (392)
T ss_pred hc----cccchh----HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccccCCCeEEECCCCC
Confidence 00 000000 000111111111111 00 111222455555666543 3445566999999875
Q ss_pred CCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhH
Q 040486 248 FFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGF 327 (460)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~ 327 (460)
.... ...|....+++++||||+||+.......++.+++++.+.+++++|.++..... +....++
T Consensus 211 ~~~~-----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~--~~~~~~~--- 274 (392)
T TIGR01426 211 DRKE-----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP--ADLGELP--- 274 (392)
T ss_pred Cccc-----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh--hHhccCC---
Confidence 4321 23466655678999999999877666788889999999999999988654211 0022234
Q ss_pred HhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCH
Q 040486 328 LETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLER 406 (460)
Q Consensus 328 ~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~ 406 (460)
+|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+++++ +|+|..+.. +++.
T Consensus 275 -----~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~~~~~~ 346 (392)
T TIGR01426 275 -----PNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPPEEVTA 346 (392)
T ss_pred -----CCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEeccccCCH
Confidence 44488999999999999999 99999999999999999999999999999999999999 599999987 8999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 407 GEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 407 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+.|.++|+++|+| ++|+++++++++.++ ..++..++++.+.+.+.
T Consensus 347 ~~l~~ai~~~l~~---~~~~~~~~~l~~~~~----~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 347 EKLREAVLAVLSD---PRYAERLRKMRAEIR----EAGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHHH----HcCCHHHHHHHHHHhhc
Confidence 9999999999999 999999999999999 56777888887777654
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.1e-44 Score=354.36 Aligned_cols=374 Identities=17% Similarity=0.194 Sum_probs=245.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccc-----------cccHH
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEAS-----------TADLV 83 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~~ 83 (460)
|||+|++.|+.||++|+++||++|+++||+|+|++++.+...+.. .|++|.++++..+..... .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-AGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-cCCceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 899999999999999999999999999999999999876655554 599999998644321110 01111
Q ss_pred HHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccC
Q 040486 84 ALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKG 163 (460)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
.....+...+...+++.++.+.+ ++||+||+|.+++++..+|+++|||++.+++++..... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-------~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-----------~ 141 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARD-------WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS-----------A 141 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc-----------c
Confidence 22333334444444444444432 68999999998889999999999999998876432110 0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCC-cc-cccchhHHHHHHHHHhhcc---------cccEEEEcChhHhhHHHHHHhh
Q 040486 164 YFPIRDSQSEAPVPELPPLRVKDIPV-VE-TCYRETLHRLVTEATNQMK---------VSSGCIWNSLQDLELASLTKFH 232 (460)
Q Consensus 164 ~~p~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~l~~~~~~~~~ 232 (460)
..|.. + ........ .. ..........+......+. .....+....+.+.++ .
T Consensus 142 ~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~-----~ 204 (401)
T cd03784 142 FPPPL---------G---RANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP-----P 204 (401)
T ss_pred CCCcc---------c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC-----C
Confidence 00000 0 00000000 00 0000001111111111111 0112222222222221 2
Q ss_pred hcCCCCccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEcccccc-CCHHHHHHHHHHHHcCCCCEEEEEcC
Q 040486 233 QDFPIPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAA-INETEFLEVAWGLANSKVPFLWVVRP 311 (460)
Q Consensus 233 ~~~~~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (460)
++++....++|+.....+. ....+.++..|++. ++++||||+||+.. ........++++++..+.++||+++.
T Consensus 205 ~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~ 278 (401)
T cd03784 205 PDWPRFDLVTGYGFRDVPY----NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGW 278 (401)
T ss_pred CCccccCcEeCCCCCCCCC----CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccC
Confidence 2223335555432222111 11223446677764 57899999999876 44567788999999999999999886
Q ss_pred CccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHh
Q 040486 312 GLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVS 391 (460)
Q Consensus 312 ~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~ 391 (460)
..... ..+|+|+ ++.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+.||++++
T Consensus 279 ~~~~~----~~~~~~v--------~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~ 344 (401)
T cd03784 279 GGLGA----EDLPDNV--------RVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVA 344 (401)
T ss_pred ccccc----cCCCCce--------EEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHH
Confidence 54211 2244444 89999999999999999 9999999999999999999999999999999999999
Q ss_pred hhhcceeeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 040486 392 DVWKVGLHLER-KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESL 453 (460)
Q Consensus 392 ~~~G~g~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~ 453 (460)
+ +|+|+.++. .++.+.|.+++++++++ + +++++++.++.++ ..++..++++.+
T Consensus 345 ~-~G~g~~l~~~~~~~~~l~~al~~~l~~---~-~~~~~~~~~~~~~----~~~g~~~~~~~i 398 (401)
T cd03784 345 E-LGAGPALDPRELTAERLAAALRRLLDP---P-SRRRAAALLRRIR----EEDGVPSAADVI 398 (401)
T ss_pred H-CCCCCCCCcccCCHHHHHHHHHHHhCH---H-HHHHHHHHHHHHH----hccCHHHHHHHH
Confidence 9 599999987 78999999999999997 5 5566777777776 345555555544
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-43 Score=342.98 Aligned_cols=389 Identities=19% Similarity=0.224 Sum_probs=250.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcc--cccccHHHHHHHHHH
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETE--ASTADLVALLSLLNV 91 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 91 (460)
+|||+|+..|++||++|+++|+++|.++||+|+|+|++.+.+...+ .|+.|..++....... ....+....+.....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-AGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQ 79 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-hCcceeeccccCChhhhhhhhhhccchhHHHhh
Confidence 5999999999999999999999999999999999999988887776 4777887765321111 111111111111222
Q ss_pred hcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCC--
Q 040486 92 QCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRD-- 169 (460)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-- 169 (460)
.....+.+.++-+.+ ..||+|+.|...+.+ .+++..++|++............ .....+...
T Consensus 80 ~~~~~~~~~~~~~~e-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 143 (406)
T COG1819 80 QFKKLIRELLELLRE-------LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPA--------AGLPLPPVGIA 143 (406)
T ss_pred hhhhhhHHHHHHHHh-------cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcc--------cccCccccccc
Confidence 222333344444444 469999999866555 89999999999855442221111 110111100
Q ss_pred CCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhccc---ccEEEEcChhHhhHHHHHHhhhc-CCCC--ccccC
Q 040486 170 SQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKV---SSGCIWNSLQDLELASLTKFHQD-FPIP--MFPIG 243 (460)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~-~~~p--~~~vG 243 (460)
.......-..+. ....+....... ......+....+.. .-..+..+-+.++....+..... ...| ..++|
T Consensus 144 ~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 219 (406)
T COG1819 144 GKLPIPLYPLPP---RLVRPLIFARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIG 219 (406)
T ss_pred ccccccccccCh---hhccccccchhh-hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccc
Confidence 000000000000 000000000000 00000000000000 00001111122222211110000 0112 66666
Q ss_pred CCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCC
Q 040486 244 PFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPL 323 (460)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l 323 (460)
|+..... .++..|.. .++++||+|+||.... .++++.+++++..++.++|..+++.. .. ...+
T Consensus 220 ~~~~~~~----------~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~-~~---~~~~ 282 (406)
T COG1819 220 PLLGEAA----------NELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGAR-DT---LVNV 282 (406)
T ss_pred ccccccc----------ccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccccc-cc---cccC
Confidence 6665543 22334422 4689999999999876 88899999999999999999987621 11 4567
Q ss_pred chhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC-
Q 040486 324 PQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER- 402 (460)
Q Consensus 324 p~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~- 402 (460)
|.|+ ++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.|+++ +|+|..+..
T Consensus 283 p~n~--------~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~~ 351 (406)
T COG1819 283 PDNV--------IVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPFE 351 (406)
T ss_pred CCce--------EEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCcc
Confidence 8888 89999999999999999 99999999999999999999999999999999999999 699999998
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 403 KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
.++.+.|+++|+++|+| ++|+++++++++.++ +.++..++.+.+.+...
T Consensus 352 ~l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~----~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 352 ELTEERLRAAVNEVLAD---DSYRRAAERLAEEFK----EEDGPAKAADLLEEFAR 400 (406)
T ss_pred cCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHh
Confidence 89999999999999999 999999999999999 45665556665555443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.6e-40 Score=334.23 Aligned_cols=393 Identities=33% Similarity=0.447 Sum_probs=256.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC-CCC--eeEEec--------CCCCCCccccc-cc
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN-YPH--FTFCSI--------EDSLSETEAST-AD 81 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~-~~g--~~~~~~--------~~~~~~~~~~~-~~ 81 (460)
..+++++++|++||++|++.+|+.|+++||+||++.+......... ... +..... +++++...... ..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 5788888889999999999999999999999999998755433221 111 111111 11222221111 11
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcC-CceEEEecccHHHHHHHHhcchhh
Q 040486 82 LVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLK-LSRIVLRTNSVSSFLVFAAFPVLS 160 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~ 160 (460)
.......+...|...+.+.+..+..... .++|++|+|.+..+...+|.... +|...+.+..........+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~--- 157 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKS----EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP--- 157 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhc----CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc---
Confidence 2222455566777777775555544332 34999999998766766776664 888887776655544333222
Q ss_pred ccCCCCCCCC-------CCCccCCCCCCCCCCCCCCccccc------chhHHHHH-------HHHHhhcccccEEEEcCh
Q 040486 161 QKGYFPIRDS-------QSEAPVPELPPLRVKDIPVVETCY------RETLHRLV-------TEATNQMKVSSGCIWNSL 220 (460)
Q Consensus 161 ~~~~~p~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~-------~~~~~~~~~~~~~l~~~~ 220 (460)
..+.|.... .+..+.+++. ...++...... ........ ........+++..++|+.
T Consensus 158 -~~~~p~~~~~~~~~~~~~~~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~ 233 (496)
T KOG1192|consen 158 -LSYVPSPFSLSSGDDMSFPERVPNLI---KKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSN 233 (496)
T ss_pred -ccccCcccCccccccCcHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccC
Confidence 223333211 1111111110 00000000000 00000000 011123344556666666
Q ss_pred hHhhHHHHHHhhhcCCCCccccCCCCcCCCCCCcccccCccccccccCCCCCC--eEEEEEccccc---cCCHHHHHHHH
Q 040486 221 QDLELASLTKFHQDFPIPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPK--SVIYVSFGSIA---AINETEFLEVA 295 (460)
Q Consensus 221 ~~l~~~~~~~~~~~~~~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~vs~Gs~~---~~~~~~~~~~~ 295 (460)
+.++.+ .....+++++|||++..... .... ...+|++..+.. ++|||||||+. .++.++...++
T Consensus 234 ~~~~~~-----~~~~~~~v~~IG~l~~~~~~----~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~ 302 (496)
T KOG1192|consen 234 PLLDFE-----PRPLLPKVIPIGPLHVKDSK----QKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELA 302 (496)
T ss_pred cccCCC-----CCCCCCCceEECcEEecCcc----cccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHH
Confidence 655542 11124559999999987433 1111 245677765554 89999999999 68999999999
Q ss_pred HHHHcC-CCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhh-hccCCCcccccccCchhHHHHHhhCCc
Q 040486 296 WGLANS-KVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEV-LAHPATGGFWTHCGWNSTLESICEGVP 373 (460)
Q Consensus 296 ~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~-l~~~~~~~~I~HgG~gs~~eal~~GvP 373 (460)
.+++++ ++.|+|++..... ..+++++.++.++|+.+.+|+||.++ |+|+.+++||||||+||++|++++|||
T Consensus 303 ~~l~~~~~~~FiW~~~~~~~------~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP 376 (496)
T KOG1192|consen 303 KALESLQGVTFLWKYRPDDS------IYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVP 376 (496)
T ss_pred HHHHhCCCceEEEEecCCcc------hhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCc
Confidence 999999 8889999987531 11233332223345677799999998 599999999999999999999999999
Q ss_pred eeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 040486 374 MICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNL 438 (460)
Q Consensus 374 ~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~ 438 (460)
+|++|+++||+.||++++++ |.|..+.. +++.+.+..++.+++.+ ++|+++++++++.+++
T Consensus 377 ~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~---~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 377 MVCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN---EEYKEAAKRLSEILRD 438 (496)
T ss_pred eecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC---hHHHHHHHHHHHHHHc
Confidence 99999999999999999997 87777777 67776699999999999 9999999999999874
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=3.6e-26 Score=218.41 Aligned_cols=310 Identities=13% Similarity=0.149 Sum_probs=197.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC--CCCCCCeeEEecCC-CCCCcccccccHHHHHHHHH
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPN--PSNYPHFTFCSIED-SLSETEASTADLVALLSLLN 90 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 90 (460)
+.||++.+.|+-||+.|.+++|++|.++||+|.|++++...+. ..+ .|+.+..++. ++.. .. ....+....
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~-~g~~~~~~~~~~l~~----~~-~~~~~~~~~ 74 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK-ENIPYYSISSGKLRR----YF-DLKNIKDPF 74 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc-cCCcEEEEeccCcCC----Cc-hHHHHHHHH
Confidence 3578888999999999999999999999999999998765543 233 4788888763 2221 11 111222222
Q ss_pred HhcchhHHHHHHHHhcccccccCCCeeEEEecCCc--hhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCC
Q 040486 91 VQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATW--YFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIR 168 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (460)
......+ ..+.-+.+ .|||+||+...+ ..+..+|..+++|++.........
T Consensus 75 ~~~~~~~-~~~~i~~~-------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g------------------- 127 (352)
T PRK12446 75 LVMKGVM-DAYVRIRK-------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPG------------------- 127 (352)
T ss_pred HHHHHHH-HHHHHHHh-------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCcc-------------------
Confidence 2221111 12222332 689999998755 346889999999998854431100
Q ss_pred CCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCC-CCccccCCCCc
Q 040486 169 DSQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFP-IPMFPIGPFHK 247 (460)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~p~~~vG~l~~ 247 (460)
. -.+.+.+ .++. +..+|++.. +.++ .++.++|+...
T Consensus 128 -------------------------~---~nr~~~~------~a~~-v~~~f~~~~--------~~~~~~k~~~tG~Pvr 164 (352)
T PRK12446 128 -------------------------L---ANKIALR------FASK-IFVTFEEAA--------KHLPKEKVIYTGSPVR 164 (352)
T ss_pred -------------------------H---HHHHHHH------hhCE-EEEEccchh--------hhCCCCCeEEECCcCC
Confidence 0 0111111 2233 233443211 1112 34778886654
Q ss_pred CCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCH-HHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchh
Q 040486 248 FFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINE-TEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQG 326 (460)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~ 326 (460)
..-. . .......+.+...+++++|+|..||...... +.+..++..+.. +.+++|+++.+..+ +.
T Consensus 165 ~~~~----~-~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~---------~~ 229 (352)
T PRK12446 165 EEVL----K-GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLD---------DS 229 (352)
T ss_pred cccc----c-ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHH---------HH
Confidence 4211 0 0011111223333567899999999886332 333444444422 47889998865311 11
Q ss_pred HHhhcCCCCcccccc-Ch-hhhhccCCCcccccccCchhHHHHHhhCCceeccccc-----cchhhhHHHHhhhhcceee
Q 040486 327 FLETLDGRGHMVKWA-PQ-QEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCF-----GDQMVNARYVSDVWKVGLH 399 (460)
Q Consensus 327 ~~~~~~~~~~v~~~v-p~-~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~-----~DQ~~na~~v~~~~G~g~~ 399 (460)
. +. .++..+..|+ ++ .++++.+|+ +|||||.+|+.|++++|+|+|++|+. .||..||+.+++ .|+|..
T Consensus 230 ~-~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~ 304 (352)
T PRK12446 230 L-QN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASV 304 (352)
T ss_pred H-hh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEE
Confidence 1 01 1233455777 44 479999999 99999999999999999999999984 589999999999 599999
Q ss_pred eCC-ccCHHHHHHHHHHHhcc
Q 040486 400 LER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 400 ~~~-~~~~~~l~~~i~~ll~~ 419 (460)
+.. +++++.|.+++.++++|
T Consensus 305 l~~~~~~~~~l~~~l~~ll~~ 325 (352)
T PRK12446 305 LYEEDVTVNSLIKHVEELSHN 325 (352)
T ss_pred cchhcCCHHHHHHHHHHHHcC
Confidence 987 89999999999999988
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=4.1e-26 Score=217.35 Aligned_cols=305 Identities=18% Similarity=0.209 Sum_probs=192.4
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHH---
Q 040486 15 RRLILFPLP-LQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLN--- 90 (460)
Q Consensus 15 ~~vl~~~~~-~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (460)
|||+|...+ +.||+..+++||++| +||+|+|++.......... .+....++.-.........+....+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP--RFPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc--ccCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 899998766 889999999999999 6999999998744333332 24555554321111112222222222222
Q ss_pred HhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCC
Q 040486 91 VQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDS 170 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (460)
......+++..+.+.+ .+||+||+|. .+.+..+|+..|||++.+........ + ....
T Consensus 77 ~~~~~~~~~~~~~l~~-------~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~------~----~~~~----- 133 (318)
T PF13528_consen 77 ARLARRIRREIRWLRE-------FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH------P----NFWL----- 133 (318)
T ss_pred HHHHHHHHHHHHHHHh-------cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc------c----cCCc-----
Confidence 1223333444444443 6899999995 55577899999999999877632110 0 0000
Q ss_pred CCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHh--hcccccEEEEcChhHhhHHHHHHhhhcCCCCccccCCCCcC
Q 040486 171 QSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATN--QMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIGPFHKF 248 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~ 248 (460)
.........+.+... ....++..+..++. ... .. .....++||+...
T Consensus 134 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~------~~--~~~~~~~~p~~~~ 182 (318)
T PF13528_consen 134 ----------------------PWDQDFGRLIERYIDRYHFPPADRRLALSFY-PPL------PP--FFRVPFVGPIIRP 182 (318)
T ss_pred ----------------------chhhhHHHHHHHhhhhccCCcccceecCCcc-ccc------cc--cccccccCchhcc
Confidence 000111222222222 13444444444443 110 00 1225677777754
Q ss_pred CCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCC-CCEEEEEcCCccCCCccCCCCchhH
Q 040486 249 FSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSK-VPFLWVVRPGLVRGAEWIEPLPQGF 327 (460)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~ 327 (460)
... +.-. .+++.|+|+||..... .+++++++.+ +++++. +... ....+
T Consensus 183 ~~~-------------~~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~------~~~~~--- 231 (318)
T PF13528_consen 183 EIR-------------ELPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA------ADPRP--- 231 (318)
T ss_pred ccc-------------ccCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc------ccccC---
Confidence 322 1111 2456799999986532 6677888876 565554 4332 01123
Q ss_pred HhhcCCCCcccccc-C-hhhhhccCCCcccccccCchhHHHHHhhCCceecccc--ccchhhhHHHHhhhhcceeeeCC-
Q 040486 328 LETLDGRGHMVKWA-P-QQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPC--FGDQMVNARYVSDVWKVGLHLER- 402 (460)
Q Consensus 328 ~~~~~~~~~v~~~v-p-~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~~v~~~~G~g~~~~~- 402 (460)
+|+.+.++. + ..++|+.|++ +|+|||+||++|++++|+|+|++|. ..||..||+++++ +|+|..++.
T Consensus 232 -----~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~~ 303 (318)
T PF13528_consen 232 -----GNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQE 303 (318)
T ss_pred -----CCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEcccc
Confidence 444777876 3 3579999999 9999999999999999999999999 7899999999999 699999987
Q ss_pred ccCHHHHHHHHHHH
Q 040486 403 KLERGEVERTIRRV 416 (460)
Q Consensus 403 ~~~~~~l~~~i~~l 416 (460)
+++++.|++.|.++
T Consensus 304 ~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 304 DLTPERLAEFLERL 317 (318)
T ss_pred cCCHHHHHHHHhcC
Confidence 89999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.4e-22 Score=191.15 Aligned_cols=310 Identities=18% Similarity=0.199 Sum_probs=192.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCCCCCC-CCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHh
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGF-SITIIHTNFNSPN-PSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQ 92 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh-~Vt~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
|+|++...++-||+.|.++|+++|.++|+ +|.++.+....+. .....++.++.++.+........ ..+......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~----~~~~~~~~~ 76 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSL----KLLKAPFKL 76 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcH----HHHHHHHHH
Confidence 57889999999999999999999999999 5888867655443 22224888888875332221111 111111111
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecCCc--hhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCC
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDATW--YFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDS 170 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (460)
+.. +.+...-+.+ .+||+||+...+ ..+..+|..+|||.+..-+...
T Consensus 77 ~~~-~~~a~~il~~-------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~----------------------- 125 (357)
T COG0707 77 LKG-VLQARKILKK-------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV----------------------- 125 (357)
T ss_pred HHH-HHHHHHHHHH-------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC-----------------------
Confidence 111 1112222222 579999997644 5567899999999999543210
Q ss_pred CCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCccccCC-CCcCC
Q 040486 171 QSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIGP-FHKFF 249 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~-l~~~~ 249 (460)
++. . .+++.+ .++. +..+|+..+.. .+ ...++++|- +..+.
T Consensus 126 ------~G~--------------a----nk~~~~------~a~~-V~~~f~~~~~~-----~~--~~~~~~tG~Pvr~~~ 167 (357)
T COG0707 126 ------PGL--------------A----NKILSK------FAKK-VASAFPKLEAG-----VK--PENVVVTGIPVRPEF 167 (357)
T ss_pred ------cch--------------h----HHHhHH------hhce-eeecccccccc-----CC--CCceEEecCcccHHh
Confidence 110 0 011111 1122 33444432110 00 112566663 33221
Q ss_pred CCCCcccccCccccccccCCCCCCeEEEEEccccccCC-HHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHH
Q 040486 250 SASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAIN-ETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFL 328 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~ 328 (460)
. ..+.. -..+... .++++|+|+-||..... .+.+......+.+ .+.+++.++.+.. +.+.
T Consensus 168 ~-----~~~~~--~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~----------~~~~ 228 (357)
T COG0707 168 E-----ELPAA--EVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDL----------EELK 228 (357)
T ss_pred h-----ccchh--hhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchH----------HHHH
Confidence 1 00111 1111111 26889999999988632 2333333333333 4677788776531 1111
Q ss_pred hhcC-CC-CccccccChh-hhhccCCCcccccccCchhHHHHHhhCCceeccccc----cchhhhHHHHhhhhcceeeeC
Q 040486 329 ETLD-GR-GHMVKWAPQQ-EVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCF----GDQMVNARYVSDVWKVGLHLE 401 (460)
Q Consensus 329 ~~~~-~~-~~v~~~vp~~-~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~----~DQ~~na~~v~~~~G~g~~~~ 401 (460)
.... .+ ..+..|+.++ ++++.+|+ +||++|.+|+.|++++|+|+|.+|.. .||..||+.++++ |+|..++
T Consensus 229 ~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~ 305 (357)
T COG0707 229 SAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIR 305 (357)
T ss_pred HHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEec
Confidence 1111 11 4666888876 69999999 99999999999999999999999983 4899999999996 9999999
Q ss_pred C-ccCHHHHHHHHHHHhcc
Q 040486 402 R-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 402 ~-~~~~~~l~~~i~~ll~~ 419 (460)
. ++|.+.|.+.|.+++++
T Consensus 306 ~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 306 QSELTPEKLAELILRLLSN 324 (357)
T ss_pred cccCCHHHHHHHHHHHhcC
Confidence 8 99999999999999998
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=7e-23 Score=194.62 Aligned_cols=307 Identities=16% Similarity=0.143 Sum_probs=171.7
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCee-EEecCCCCCCcc-cccccHHHHHHHHHHh
Q 040486 16 RLILFPLP-LQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFT-FCSIEDSLSETE-ASTADLVALLSLLNVQ 92 (460)
Q Consensus 16 ~vl~~~~~-~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (460)
||++...+ +.||+.|.++|+++|.+ ||+|+|+++......... .++. +...|. +.... ....+....+......
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~-~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~~~~~ 77 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK-YGFKVFETFPG-IKLKGEDGKVNIVKTLRNKEYS 77 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh-hcCcceeccCC-ceEeecCCcCcHHHHHHhhccc
Confidence 57776655 55999999999999999 999999988763333332 2444 333331 11100 0111222222111011
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCCCC
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDSQS 172 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 172 (460)
....+....+.+.+ .+||+||+| ..+.+..+|+.+|||++.+..+... .++..
T Consensus 78 ~~~~~~~~~~~l~~-------~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------~~~~~------------- 130 (321)
T TIGR00661 78 PKKAIRREINIIRE-------YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------RYPLK------------- 130 (321)
T ss_pred cHHHHHHHHHHHHh-------cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh------cCCcc-------------
Confidence 11233333343333 689999999 5666788999999999987653110 00000
Q ss_pred CccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhc-ccccEEEEcChhHhhHHHHHHhhhcCCCCcc--ccCCCCcCC
Q 040486 173 EAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQM-KVSSGCIWNSLQDLELASLTKFHQDFPIPMF--PIGPFHKFF 249 (460)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~--~vG~l~~~~ 249 (460)
. +............+ ..++......++.... ..++.. .-+|...
T Consensus 131 ---------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~~~~~~~~~~~-- 177 (321)
T TIGR00661 131 ---------------------T-DLIVYPTMAALRIFNERCERFIVPDYPFPYT---------ICPKIIKNMEGPLIR-- 177 (321)
T ss_pred ---------------------c-chhHHHHHHHHHHhccccceEeeecCCCCCC---------CCccccccCCCcccc--
Confidence 0 00000001111111 1222222222211100 001110 0011110
Q ss_pred CCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHh
Q 040486 250 SASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLE 329 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~ 329 (460)
....+|.. .+++.|+|.+|+.. ...+++++++.+. +.+.+...... ...++
T Consensus 178 -----------~~~~~~~~--~~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~~~----~~~~~----- 228 (321)
T TIGR00661 178 -----------YDVDDVDN--YGEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYEVA----KNSYN----- 228 (321)
T ss_pred -----------hhhhcccc--CCCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCCCC----ccccC-----
Confidence 01112221 23566777788743 2456777877763 22332222110 11233
Q ss_pred hcCCCCccccccC--hhhhhccCCCcccccccCchhHHHHHhhCCceecccccc--chhhhHHHHhhhhcceeeeCC-cc
Q 040486 330 TLDGRGHMVKWAP--QQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFG--DQMVNARYVSDVWKVGLHLER-KL 404 (460)
Q Consensus 330 ~~~~~~~v~~~vp--~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~-~~ 404 (460)
+|+.+.+|.| ..+.|+.|++ +|||||++|++|++++|+|++++|..+ ||..||+.+++ .|+|+.++. ++
T Consensus 229 ---~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~ 302 (321)
T TIGR00661 229 ---ENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL 302 (321)
T ss_pred ---CCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH
Confidence 3447889997 3478899999 999999999999999999999999955 89999999999 599999987 54
Q ss_pred CHHHHHHHHHHHhccchHHHHH
Q 040486 405 ERGEVERTIRRVMTEAEGQEIR 426 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~ 426 (460)
++.+++.++++| +.|+
T Consensus 303 ---~~~~~~~~~~~~---~~~~ 318 (321)
T TIGR00661 303 ---RLLEAILDIRNM---KRYK 318 (321)
T ss_pred ---HHHHHHHhcccc---cccc
Confidence 666677778877 5554
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=7.3e-20 Score=177.24 Aligned_cols=344 Identities=15% Similarity=0.094 Sum_probs=206.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC--CCCCCCCCeeEEecCCC-CCCcccccccHHHHHHHHH
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNS--PNPSNYPHFTFCSIEDS-LSETEASTADLVALLSLLN 90 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~--~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 90 (460)
+|||+++..+..||...++.|+++|.++||+|++++.+... ..... .|++++.++.. +.. ......+....
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~-~g~~~~~~~~~~~~~-----~~~~~~l~~~~ 74 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK-AGIEFHFIPSGGLRR-----KGSLANLKAPF 74 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc-CCCcEEEEeccCcCC-----CChHHHHHHHH
Confidence 59999999888899999999999999999999999886422 11122 37777777531 111 11111111111
Q ss_pred HhcchhHHHHHHHHhcccccccCCCeeEEEecCC--chhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCC
Q 040486 91 VQCVVPFRNCLAKLLSNVEEEEKEPIACLITDAT--WYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIR 168 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (460)
.. ...+..+.+.+.+ .+||+|++... ...+..+++..++|++.......
T Consensus 75 ~~-~~~~~~~~~~ik~-------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~--------------------- 125 (357)
T PRK00726 75 KL-LKGVLQARKILKR-------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV--------------------- 125 (357)
T ss_pred HH-HHHHHHHHHHHHh-------cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC---------------------
Confidence 11 1112222222332 57999999963 34456678889999986321100
Q ss_pred CCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCccccCCCCcC
Q 040486 169 DSQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIGPFHKF 248 (460)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~ 248 (460)
+ . ...++.. ..++.++..+...+. . .+ ..++.++|.....
T Consensus 126 --------~---------------~---~~~r~~~------~~~d~ii~~~~~~~~----~--~~--~~~i~vi~n~v~~ 165 (357)
T PRK00726 126 --------P---------------G---LANKLLA------RFAKKVATAFPGAFP----E--FF--KPKAVVTGNPVRE 165 (357)
T ss_pred --------c---------------c---HHHHHHH------HHhchheECchhhhh----c--cC--CCCEEEECCCCCh
Confidence 0 0 0011111 123333332221110 0 11 2447777755433
Q ss_pred CCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCC--CEEEEEcCCccCCCccCCCCchh
Q 040486 249 FSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKV--PFLWVVRPGLVRGAEWIEPLPQG 326 (460)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~lp~~ 326 (460)
... .... ...-+...++.++|++..|+... ......+.+++.++.. .++|.++.+.. +.+...
T Consensus 166 ~~~------~~~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~------~~~~~~ 230 (357)
T PRK00726 166 EIL------ALAA-PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDL------EEVRAA 230 (357)
T ss_pred Hhh------cccc-hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcH------HHHHHH
Confidence 211 0000 00011111345567765565332 2222334466665543 34555555431 111111
Q ss_pred HHhhcCCCCccccccCh-hhhhccCCCcccccccCchhHHHHHhhCCceecccc----ccchhhhHHHHhhhhcceeeeC
Q 040486 327 FLETLDGRGHMVKWAPQ-QEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPC----FGDQMVNARYVSDVWKVGLHLE 401 (460)
Q Consensus 327 ~~~~~~~~~~v~~~vp~-~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~g~~~~ 401 (460)
. + ..-++.+.+|+.+ .++++.+|+ +|+|+|.+|++||+++|+|+|++|. .+||..|+..+.+. |.|..+.
T Consensus 231 ~-~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~ 305 (357)
T PRK00726 231 Y-A-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIP 305 (357)
T ss_pred h-h-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEE
Confidence 1 1 2223566788854 689999999 9999999999999999999999997 46899999999995 9999998
Q ss_pred C-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 402 R-KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 402 ~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
. +++++.|.++|.++++| ++++++..+-++++. +..+..+.++.+.+.+++
T Consensus 306 ~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 357 (357)
T PRK00726 306 QSDLTPEKLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEELARK 357 (357)
T ss_pred cccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhhC
Confidence 7 77899999999999999 777766666655554 667778888888777653
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.81 E-value=9.9e-18 Score=161.95 Aligned_cols=319 Identities=15% Similarity=0.102 Sum_probs=186.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCeeEEecCCC-CCCcccccccHHHHHHHHHHhc
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNP-SNYPHFTFCSIEDS-LSETEASTADLVALLSLLNVQC 93 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
+|++...+..||....+.|++.|.++||+|++++........ ....|+++..++.. .... .....+......
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~- 74 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRK-----GSLKKLKAPFKL- 74 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCC-----ChHHHHHHHHHH-
Confidence 588888888999999999999999999999999875432211 11236777766532 1111 111111111110
Q ss_pred chhHHHHHHHHhcccccccCCCeeEEEecCC--chhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCCC
Q 040486 94 VVPFRNCLAKLLSNVEEEEKEPIACLITDAT--WYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDSQ 171 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 171 (460)
...+..+...+.+ .+||+|+++.. ...+..+|...++|++......
T Consensus 75 ~~~~~~~~~~i~~-------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------------------------- 122 (350)
T cd03785 75 LKGVLQARKILKK-------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------------------------- 122 (350)
T ss_pred HHHHHHHHHHHHh-------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-------------------------
Confidence 1111122222222 57999998753 3556778899999998632110
Q ss_pred CCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCccccCCCCcCCCC
Q 040486 172 SEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIGPFHKFFSA 251 (460)
Q Consensus 172 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~~~~ 251 (460)
.+ . ...+. ....++.++..+....+. .. ..++.++|........
T Consensus 123 ----~~---------------~---~~~~~------~~~~~~~vi~~s~~~~~~-----~~---~~~~~~i~n~v~~~~~ 166 (350)
T cd03785 123 ----VP---------------G---LANRL------LARFADRVALSFPETAKY-----FP---KDKAVVTGNPVREEIL 166 (350)
T ss_pred ----Cc---------------c---HHHHH------HHHhhCEEEEcchhhhhc-----CC---CCcEEEECCCCchHHh
Confidence 00 0 00011 112345555544322221 00 2346666654432111
Q ss_pred CCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcC---CCCEEEEEcCCccCCCccCCCCchhHH
Q 040486 252 SSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANS---KVPFLWVVRPGLVRGAEWIEPLPQGFL 328 (460)
Q Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~ 328 (460)
.+.+ . ...+...+++++|++..|+.... .....+.+++..+ +..+++.++.+. .+.+.+.+.
T Consensus 167 -----~~~~-~-~~~~~~~~~~~~i~~~~g~~~~~--~~~~~l~~a~~~l~~~~~~~~~i~G~g~------~~~l~~~~~ 231 (350)
T cd03785 167 -----ALDR-E-RARLGLRPGKPTLLVFGGSQGAR--AINEAVPEALAELLRKRLQVIHQTGKGD------LEEVKKAYE 231 (350)
T ss_pred -----hhhh-h-HHhcCCCCCCeEEEEECCcHhHH--HHHHHHHHHHHHhhccCeEEEEEcCCcc------HHHHHHHHh
Confidence 0000 0 12222224556677666665431 2222233444443 344555665432 111222222
Q ss_pred hhcCCCCcccccc-ChhhhhccCCCcccccccCchhHHHHHhhCCceecccc----ccchhhhHHHHhhhhcceeeeCC-
Q 040486 329 ETLDGRGHMVKWA-PQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPC----FGDQMVNARYVSDVWKVGLHLER- 402 (460)
Q Consensus 329 ~~~~~~~~v~~~v-p~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~g~~~~~- 402 (460)
+. .+|+++.+|+ ...++|+.+|+ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+. |.|..++.
T Consensus 232 ~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~ 307 (350)
T cd03785 232 EL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQE 307 (350)
T ss_pred cc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecC
Confidence 22 3567888888 34679999999 9999999999999999999999986 46799999999995 99999987
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHH
Q 040486 403 KLERGEVERTIRRVMTEAEGQEIRVRIM 430 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~ 430 (460)
..+.++|.++|.++++| +..+++..
T Consensus 308 ~~~~~~l~~~i~~ll~~---~~~~~~~~ 332 (350)
T cd03785 308 ELTPERLAAALLELLSD---PERLKAMA 332 (350)
T ss_pred CCCHHHHHHHHHHHhcC---HHHHHHHH
Confidence 57899999999999998 55444333
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.78 E-value=1.8e-16 Score=153.05 Aligned_cols=312 Identities=16% Similarity=0.125 Sum_probs=172.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC-C-CCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHh
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSP-N-PSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQ 92 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~-~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
|||+|++.+..||+...+.||++|.++||+|++++.+.... . ... .|++++.++..-. ......+.+......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~-~g~~~~~i~~~~~----~~~~~~~~l~~~~~~ 75 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPK-AGIEFYFIPVGGL----RRKGSFRLIKTPLKL 75 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccccc-CCCceEEEeccCc----CCCChHHHHHHHHHH
Confidence 69999999999999988899999999999999998753322 1 122 4777777653211 011121222221111
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecCCc--hhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCC
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDATW--YFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDS 170 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (460)
...+..+.+.+.+ .+||+|++.... ..+..+++.+++|.+....... +
T Consensus 76 -~~~~~~l~~~i~~-------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------~---- 125 (348)
T TIGR01133 76 -LKAVFQARRILKK-------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV------------------P---- 125 (348)
T ss_pred -HHHHHHHHHHHHh-------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC------------------c----
Confidence 1112222222322 579999998633 3455678889999974211000 0
Q ss_pred CCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCccccCCCCcCCC
Q 040486 171 QSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIGPFHKFFS 250 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~~~ 250 (460)
....+++ .+.++.++..+ +..... ....++|.-.....
T Consensus 126 -------------------------~~~~~~~------~~~~d~ii~~~-~~~~~~----------~~~~~i~n~v~~~~ 163 (348)
T TIGR01133 126 -------------------------GLTNKLL------SRFAKKVLISF-PGAKDH----------FEAVLVGNPVRQEI 163 (348)
T ss_pred -------------------------cHHHHHH------HHHhCeeEECc-hhHhhc----------CCceEEcCCcCHHH
Confidence 0001111 12345544433 222110 01234442221110
Q ss_pred CCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHc---CCCCEEEEEcCCccCCCccCCCCchhH
Q 040486 251 ASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLAN---SKVPFLWVVRPGLVRGAEWIEPLPQGF 327 (460)
Q Consensus 251 ~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~ 327 (460)
. . +.. -..++...+++++|.+..|+... ......+.++++. .+.++++..+++. . +.+
T Consensus 164 ~----~-~~~--~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~---------~-~~l 224 (348)
T TIGR01133 164 R----S-LPV--PRERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND---------L-EKV 224 (348)
T ss_pred h----c-ccc--hhhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch---------H-HHH
Confidence 0 0 000 01122222344555544455432 2222223345443 3445655444321 1 122
Q ss_pred HhhcCCCC--cccccc--ChhhhhccCCCcccccccCchhHHHHHhhCCceeccccc---cchhhhHHHHhhhhcceeee
Q 040486 328 LETLDGRG--HMVKWA--PQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCF---GDQMVNARYVSDVWKVGLHL 400 (460)
Q Consensus 328 ~~~~~~~~--~v~~~v--p~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~g~~~ 400 (460)
.+...+.. .++.+. .-.++++.+|+ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+++. |.|..+
T Consensus 225 ~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~ 301 (348)
T TIGR01133 225 KNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVI 301 (348)
T ss_pred HHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEE
Confidence 11111111 122333 44679999999 99999988999999999999999873 4788899999994 999988
Q ss_pred CC-ccCHHHHHHHHHHHhccchHHHHHHH
Q 040486 401 ER-KLERGEVERTIRRVMTEAEGQEIRVR 428 (460)
Q Consensus 401 ~~-~~~~~~l~~~i~~ll~~~~~~~~~~~ 428 (460)
+. +.+.+.|.+++.++++| ++.+++
T Consensus 302 ~~~~~~~~~l~~~i~~ll~~---~~~~~~ 327 (348)
T TIGR01133 302 RQKELLPEKLLEALLKLLLD---PANLEA 327 (348)
T ss_pred ecccCCHHHHHHHHHHHHcC---HHHHHH
Confidence 76 66899999999999999 555443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.77 E-value=2.8e-17 Score=159.55 Aligned_cols=350 Identities=10% Similarity=-0.015 Sum_probs=194.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--CCCeeEEecCCCCCCcccccccHHHHHHHHHHh
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN--YPHFTFCSIEDSLSETEASTADLVALLSLLNVQ 92 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
.||++...++.||+.|. +|+++|.++|+++.|++.... ..... ..++.+..++ ...+.+.+.....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~-~m~~~g~~~~~~~~~l~---------v~G~~~~l~~~~~- 73 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP-RMAAEGCEVLYSMEELS---------VMGLREVLGRLGR- 73 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH-HHHhCcCccccChHHhh---------hccHHHHHHHHHH-
Confidence 58899999999999999 999999999999999987521 11110 0123333332 1111122222211
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecCCc-hhHHH--HHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCC
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDATW-YFTQA--VAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRD 169 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~-~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 169 (460)
....+....+.+.+ .|||+||+-... +.... .|+.+|||++.+.+...+.+
T Consensus 74 ~~~~~~~~~~~l~~-------~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw------------------- 127 (385)
T TIGR00215 74 LLKIRKEVVQLAKQ-------AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAW------------------- 127 (385)
T ss_pred HHHHHHHHHHHHHh-------cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhc-------------------
Confidence 12222333333443 689999975532 22234 88999999998642211000
Q ss_pred CCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCccccCCCCcCC
Q 040486 170 SQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIGPFHKFF 249 (460)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~~ 249 (460)
+ ..++..+.+. ++.++ .+++. +... +++ .+.+..++|.-..+.
T Consensus 128 -------------~--------~~~~r~l~~~----------~d~v~-~~~~~-e~~~---~~~-~g~~~~~vGnPv~~~ 170 (385)
T TIGR00215 128 -------------R--------KWRAKKIEKA----------TDFLL-AILPF-EKAF---YQK-KNVPCRFVGHPLLDA 170 (385)
T ss_pred -------------C--------cchHHHHHHH----------HhHhh-ccCCC-cHHH---HHh-cCCCEEEECCchhhh
Confidence 0 0111111222 22222 22322 1111 111 134566777433221
Q ss_pred CCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcC-----CCCEEEEEcCCccCCCccCCCCc
Q 040486 250 SASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANS-----KVPFLWVVRPGLVRGAEWIEPLP 324 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp 324 (460)
.. ...+...+..+-+.-.+++++|.+-.||....-......+++++..+ +.++++........ ..-
T Consensus 171 ~~---~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~------~~~ 241 (385)
T TIGR00215 171 IP---LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRR------LQF 241 (385)
T ss_pred cc---ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhH------HHH
Confidence 11 00011111222222234567888878886653233445566555443 23455544332100 000
Q ss_pred hhHHhhcCCCCcccccc-ChhhhhccCCCcccccccCchhHHHHHhhCCceecc----cccc---------chhhhHHHH
Q 040486 325 QGFLETLDGRGHMVKWA-PQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQ----PCFG---------DQMVNARYV 390 (460)
Q Consensus 325 ~~~~~~~~~~~~v~~~v-p~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~----P~~~---------DQ~~na~~v 390 (460)
+.+.+....+..+.-+. ...++++.+|+ +|+-+|..|+ |++++|+|+|++ |+.. +|..|+..+
T Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil 318 (385)
T TIGR00215 242 EQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNIL 318 (385)
T ss_pred HHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHh
Confidence 11111111122222221 23469999999 9999999988 999999999999 8742 388899999
Q ss_pred hhhhcceeeeCC-ccCHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 040486 391 SDVWKVGLHLER-KLERGEVERTIRRVMTEAEGQ----EIRVRIMILKEKLNLCLIQGGSSYQSLESLIS 455 (460)
Q Consensus 391 ~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 455 (460)
.+. ++..++.. +.|++.|.+.+.++++| + +++++.++--+++++.+.+.|.+.++++.+++
T Consensus 319 ~~~-~~~pel~q~~~~~~~l~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 319 ANR-LLVPELLQEECTPHPLAIALLLLLEN---GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred cCC-ccchhhcCCCCCHHHHHHHHHHHhcC---CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 996 99999876 89999999999999999 5 45554444444444444477888888887765
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.71 E-value=1.7e-15 Score=136.39 Aligned_cols=331 Identities=17% Similarity=0.155 Sum_probs=195.2
Q ss_pred CCCcEEEEEcCC--CccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeeEEecCCCC--CCcc----ccccc
Q 040486 12 KKGRRLILFPLP--LQGHINPMLQLANILYSK--GFSITIIHTNFNSPNPSNYPHFTFCSIEDSL--SETE----ASTAD 81 (460)
Q Consensus 12 ~~~~~vl~~~~~--~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~----~~~~~ 81 (460)
.+++||+|++.- +.||+..++.+|++|++. |.+|++++.........-..|++|+.+|.-. ..++ +...+
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~ 86 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGD 86 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCC
Confidence 345799999976 559999999999999998 9999999987555544433699999999532 2222 12222
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhc
Q 040486 82 LVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQ 161 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 161 (460)
..+ +.+.-... ++..... .|||++|+|.+-++ +-.++ .|... +.. .
T Consensus 87 l~e----~~~~Rs~l---il~t~~~-------fkPDi~IVd~~P~G---lr~EL-~ptL~-----------yl~-----~ 132 (400)
T COG4671 87 LEE----TKKLRSQL---ILSTAET-------FKPDIFIVDKFPFG---LRFEL-LPTLE-----------YLK-----T 132 (400)
T ss_pred HHH----HHHHHHHH---HHHHHHh-------cCCCEEEEeccccc---hhhhh-hHHHH-----------HHh-----h
Confidence 222 21111111 2233332 58999999975443 11111 11111 000 0
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCCcc--cccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHH-HHhhhcCCCC
Q 040486 162 KGYFPIRDSQSEAPVPELPPLRVKDIPVVE--TCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASL-TKFHQDFPIP 238 (460)
Q Consensus 162 ~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~p 238 (460)
.+..+. .++ ..+.+.+... .++++...+...+ ..+.+++-..|.+-.+.- ..+.+.....
T Consensus 133 ~~t~~v---------L~l--r~i~D~p~~~~~~w~~~~~~~~I~r------~yD~V~v~GdP~f~d~~~~~~~~~~i~~k 195 (400)
T COG4671 133 TGTRLV---------LGL--RSIRDIPQELEADWRRAETVRLINR------FYDLVLVYGDPDFYDPLTEFPFAPAIRAK 195 (400)
T ss_pred cCCcce---------eeh--HhhhhchhhhccchhhhHHHHHHHH------hheEEEEecCccccChhhcCCccHhhhhh
Confidence 000000 000 0001111000 0111112222222 234555555555432210 0011111233
Q ss_pred ccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcC-CCC--EEEEEcCCccC
Q 040486 239 MFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANS-KVP--FLWVVRPGLVR 315 (460)
Q Consensus 239 ~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~--~i~~~~~~~~~ 315 (460)
+.|+|.+..+-+. ...|.. .. +++.-|.||-|... ...+.+...++|.... +.+ .+..++..
T Consensus 196 ~~ytG~vq~~~~~---~~~p~~-------~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~--- 260 (400)
T COG4671 196 MRYTGFVQRSLPH---LPLPPH-------EA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPF--- 260 (400)
T ss_pred eeEeEEeeccCcC---CCCCCc-------CC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCC---
Confidence 8999998432111 111111 11 34556888988744 4667777777776653 444 44444433
Q ss_pred CCccCCCCchhH----HhhcC--CCCccccccChh-hhhccCCCcccccccCchhHHHHHhhCCceeccccc---cchhh
Q 040486 316 GAEWIEPLPQGF----LETLD--GRGHMVKWAPQQ-EVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCF---GDQMV 385 (460)
Q Consensus 316 ~~~~~~~lp~~~----~~~~~--~~~~v~~~vp~~-~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~---~DQ~~ 385 (460)
+|... ....+ +++.+..|-.+. .++..++. +|+-||+||++|-|.+|+|.+++|.. -||-.
T Consensus 261 -------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQli 331 (400)
T COG4671 261 -------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLI 331 (400)
T ss_pred -------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHH
Confidence 55433 22333 456777887774 78999999 99999999999999999999999995 39999
Q ss_pred hHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhc
Q 040486 386 NARYVSDVWKVGLHLER-KLERGEVERTIRRVMT 418 (460)
Q Consensus 386 na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~ 418 (460)
.|+|+++ +|+--++.+ .+++..|++++...++
T Consensus 332 RA~Rl~~-LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 332 RAQRLEE-LGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HHHHHHh-cCcceeeCcccCChHHHHHHHHhccc
Confidence 9999999 799988888 9999999999999987
No 37
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.68 E-value=2.7e-15 Score=146.58 Aligned_cols=107 Identities=12% Similarity=0.136 Sum_probs=72.4
Q ss_pred hhhhccCCCcccccccCchhHHHHHhhCCceecccccc--------chhhh-----HHHHhhhhcceeeeCC-ccCHHHH
Q 040486 344 QEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFG--------DQMVN-----ARYVSDVWKVGLHLER-KLERGEV 409 (460)
Q Consensus 344 ~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~--------DQ~~n-----a~~v~~~~G~g~~~~~-~~~~~~l 409 (460)
..+++.+|+ +|+-+|.+++ |++++|+|+|++|-.. .|..| +..+.+. +++..+.. ..+++.|
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l 331 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQEEATPEKL 331 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCCCCCHHHH
Confidence 578999999 9999999888 9999999999985432 22222 2444442 44544544 6889999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 410 ERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 410 ~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
.+++.++++| ++.+++..+-.+.+.+.. ..++..+.++.+.+.+.
T Consensus 332 ~~~i~~ll~~---~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 332 ARALLPLLAD---GARRQALLEGFTELHQQL-RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhh
Confidence 9999999999 555544433333333333 45667777777766554
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.64 E-value=1.2e-14 Score=141.92 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=110.9
Q ss_pred CCeEEEEEccccccCCHHHHHHHHHHHHcC-CCCEEEEEcCCccCCCccCCCCchhHHh---hcCCCCccccccChh-hh
Q 040486 272 PKSVIYVSFGSIAAINETEFLEVAWGLANS-KVPFLWVVRPGLVRGAEWIEPLPQGFLE---TLDGRGHMVKWAPQQ-EV 346 (460)
Q Consensus 272 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~v~~~vp~~-~~ 346 (460)
+++++++..|+.... ..+..+++++.+. +.++++..+.+.. +-+.+.+ ..++++++.+|+++. ++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~--------~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA--------LKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH--------HHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 456777777876532 2345567777654 4666666653310 1111211 222466888999875 79
Q ss_pred hccCCCcccccccCchhHHHHHhhCCceecc-ccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchHHHH
Q 040486 347 LAHPATGGFWTHCGWNSTLESICEGVPMICQ-PCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEGQEI 425 (460)
Q Consensus 347 l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 425 (460)
++.+|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|+.. .+.++|.++|.++++| +..
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~---~~~~~l~~~i~~ll~~---~~~ 341 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI---RDDEEVFAKTEALLQD---DMK 341 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE---CCHHHHHHHHHHHHCC---HHH
Confidence 999999 99999988999999999999984 6777788999999984 998764 3678999999999998 555
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 426 RVRIMILKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
+++.++-+..+. ...+.++.++.+++.+
T Consensus 342 ~~~m~~~~~~~~----~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 342 LLQMKEAMKSLY----LPEPADHIVDDILAEN 369 (380)
T ss_pred HHHHHHHHHHhC----CCchHHHHHHHHHHhh
Confidence 443333222222 3445666666666554
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.61 E-value=3.4e-14 Score=131.62 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=77.3
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHcC--CCCEEEEEcCCccCCCccCCCCchhHHhh--cCCCCccccccChh-hhh
Q 040486 273 KSVIYVSFGSIAAINETEFLEVAWGLANS--KVPFLWVVRPGLVRGAEWIEPLPQGFLET--LDGRGHMVKWAPQQ-EVL 347 (460)
Q Consensus 273 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~v~~~vp~~-~~l 347 (460)
.+.|+|+||..-. ......+++++.+. +.++.++++.... ..+.+.+. ...|+.+..+++++ +++
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~--------~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNP--------NLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCc--------CHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 3568999996543 23445677777764 4567777765421 11222221 23467788999986 899
Q ss_pred ccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHH
Q 040486 348 AHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARY 389 (460)
Q Consensus 348 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 389 (460)
+.+|+ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99999 999999 9999999999999999999999999975
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.56 E-value=6.7e-17 Score=138.48 Aligned_cols=135 Identities=20% Similarity=0.252 Sum_probs=95.4
Q ss_pred EEEEEccccccC-CHHHHHHHHHHHHc--CCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccC-hhhhhccC
Q 040486 275 VIYVSFGSIAAI-NETEFLEVAWGLAN--SKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAP-QQEVLAHP 350 (460)
Q Consensus 275 ~v~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp-~~~~l~~~ 350 (460)
+|+|+.||.... -.+.+..+...+.. ...+++++++...... ....+ +....++.+.+|++ ..++++.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~------~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEE------LKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHH------HCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHH------HHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 489999986642 11112222333322 2478888888763111 11111 11124567889999 56899999
Q ss_pred CCcccccccCchhHHHHHhhCCceecccccc----chhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhcc
Q 040486 351 ATGGFWTHCGWNSTLESICEGVPMICQPCFG----DQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 351 ~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
|+ +|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+.. ..+.+.|.++|.+++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCHHHHHHHHHHHHcC
Confidence 99 999999999999999999999999988 999999999995 99999987 78899999999999998
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.55 E-value=3.3e-13 Score=131.90 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=111.7
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHH-HcC-CCCEEEEEcCCccCCCccCCCCchhHHhh--cCCCCccccccChh-h
Q 040486 271 TPKSVIYVSFGSIAAINETEFLEVAWGL-ANS-KVPFLWVVRPGLVRGAEWIEPLPQGFLET--LDGRGHMVKWAPQQ-E 345 (460)
Q Consensus 271 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al-~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~v~~~vp~~-~ 345 (460)
+++++|++..|+... ...+..+++++ +.. +.++++.++.+. .+-+.+.+. ..+++.+.+|+.+. +
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--------~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--------ELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--------HHHHHHHHHhccCCCeEEEeccchHHH
Confidence 356788888888763 23445555554 322 356666655431 011222221 12456778999774 7
Q ss_pred hhccCCCcccccccCchhHHHHHhhCCceecc-ccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchHHH
Q 040486 346 VLAHPATGGFWTHCGWNSTLESICEGVPMICQ-PCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEGQE 424 (460)
Q Consensus 346 ~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~ 424 (460)
+++.+|+ +|+.+|..|+.||+++|+|+|++ |..+.|..|+..+++. |+|.... +.+++.++|.++++| +.
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~---~~~~l~~~i~~ll~~---~~ 340 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD---TPEEAIKIVASLTNG---NE 340 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC---CHHHHHHHHHHHhcC---HH
Confidence 9999999 99998888999999999999998 7777788999999995 9998753 788899999999998 43
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 425 IRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
. .++|++..++. .+..+..+.++.+++.+.
T Consensus 341 ~---~~~m~~~~~~~-~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 341 Q---LTNMISTMEQD-KIKYATQTICRDLLDLIG 370 (391)
T ss_pred H---HHHHHHHHHHh-cCCCCHHHHHHHHHHHhh
Confidence 3 23444444322 134556666666666554
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.51 E-value=1e-11 Score=120.77 Aligned_cols=351 Identities=13% Similarity=0.033 Sum_probs=192.5
Q ss_pred CCccCHHHHHHHHHHHHh--CCCeEE---EEeCCCCCC--CCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHH-hcc
Q 040486 23 PLQGHINPMLQLANILYS--KGFSIT---IIHTNFNSP--NPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNV-QCV 94 (460)
Q Consensus 23 ~~~GH~~p~l~La~~L~~--~Gh~Vt---~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (460)
.++|-=.-.++||++|.+ .|++|. ++++....+ .+.. .| .+..+|.+ ..........+..... ...
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~-~g-~~~~~~sg----g~~~~~~~~~~~~~~~gl~~ 78 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI-IG-PTKELPSG----GFSYQSLRGLLRDLRAGLVG 78 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce-eC-CCCCCCCC----CccCCCHHHHHHHHHhhHHH
Confidence 455555667889999998 699999 998874432 2222 24 55555532 2222333344444433 222
Q ss_pred hhHHH--HHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCCCC
Q 040486 95 VPFRN--CLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDSQS 172 (460)
Q Consensus 95 ~~l~~--~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 172 (460)
..++. .+.++. .|||+||+-.-+. ...+|..+|+|++.+.+.-..... .. +++. ....+
T Consensus 79 ~~~~~~~~~~~~~--------~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~-----~~--~~~~---~~~~~ 139 (396)
T TIGR03492 79 LTLGQWRALRKWA--------KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYW-----ES--GPRR---SPSDE 139 (396)
T ss_pred HHHHHHHHHHHHh--------hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceee-----cC--CCCC---ccchh
Confidence 22221 333332 2799999887555 888999999999997665211100 00 0000 00111
Q ss_pred CccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhh-cccccEEEEcChhHhhHHHHHHhhhcCCCCccccCCCCcCCCC
Q 040486 173 EAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQ-MKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIGPFHKFFSA 251 (460)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~~~~ 251 (460)
+.++++.. ...+ + .... .+.++.++.. ++.- ... +++ .+.++.++|--..+.-.
T Consensus 140 ~~~~~G~~--------------~~p~-e----~n~l~~~~a~~v~~~-~~~t-~~~---l~~-~g~k~~~vGnPv~d~l~ 194 (396)
T TIGR03492 140 YHRLEGSL--------------YLPW-E----RWLMRSRRCLAVFVR-DRLT-ARD---LRR-QGVRASYLGNPMMDGLE 194 (396)
T ss_pred hhccCCCc--------------cCHH-H----HHHhhchhhCEEeCC-CHHH-HHH---HHH-CCCeEEEeCcCHHhcCc
Confidence 22222211 0001 0 1111 2345554443 3321 111 222 24578899955444321
Q ss_pred CCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcC----CCCEEEEEcCCccCCCccCCCCchhH
Q 040486 252 SSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANS----KVPFLWVVRPGLVRGAEWIEPLPQGF 327 (460)
Q Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~lp~~~ 327 (460)
.... .-+ .+++++|.+--||....-...+..++++++.+ +..+++.+.+... . +.+
T Consensus 195 ------~~~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~--------~-~~~ 254 (396)
T TIGR03492 195 ------PPER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS--------L-EKL 254 (396)
T ss_pred ------cccc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC--------H-HHH
Confidence 0010 011 23456788888987653333344566666554 5678888744320 0 111
Q ss_pred HhhcC-------------------CCCccccccCh-hhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhH
Q 040486 328 LETLD-------------------GRGHMVKWAPQ-QEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNA 387 (460)
Q Consensus 328 ~~~~~-------------------~~~~v~~~vp~-~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na 387 (460)
.+... +++.+..+..+ .++++.+|+ +|+-+|..| .|+++.|+|+|++|.-..|. |+
T Consensus 255 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na 330 (396)
T TIGR03492 255 QAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TY 330 (396)
T ss_pred HHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HH
Confidence 11110 11233344434 479999999 999999766 99999999999999877786 88
Q ss_pred HHHhhhh----cceeeeCCccCHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHH
Q 040486 388 RYVSDVW----KVGLHLERKLERGEVERTIRRVMTEAEGQEIRVRIM-ILKEKLNLCLIQGGSSYQSLESLISY 456 (460)
Q Consensus 388 ~~v~~~~----G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~g~~~~~~~~~~~~ 456 (460)
...++ . |.+..+.. .+.+.|.+++.++++| +..+++.. ..++++ .+.+.+.+.++.+.+.
T Consensus 331 ~~~~~-~~~l~g~~~~l~~-~~~~~l~~~l~~ll~d---~~~~~~~~~~~~~~l----g~~~a~~~ia~~i~~~ 395 (396)
T TIGR03492 331 GFAEA-QSRLLGGSVFLAS-KNPEQAAQVVRQLLAD---PELLERCRRNGQERM----GPPGASARIAESILKQ 395 (396)
T ss_pred HHHHh-hHhhcCCEEecCC-CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHh
Confidence 77666 3 65655544 4569999999999999 55554333 222333 2556666666655543
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.46 E-value=2e-11 Score=119.20 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=104.7
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHHHc---------CCCCEEEEEcCCccCCCccCCCCchhHHhh-cCCCCccccc
Q 040486 271 TPKSVIYVSFGSIAAINETEFLEVAWGLAN---------SKVPFLWVVRPGLVRGAEWIEPLPQGFLET-LDGRGHMVKW 340 (460)
Q Consensus 271 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~---------~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~-~~~~~~v~~~ 340 (460)
+++++|.+..|+..... ...+++++.. .+.++++.++.+.. +-+.+.+. ...++.+.+|
T Consensus 204 ~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--------~~~~L~~~~~~~~v~~~G~ 272 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRNKK--------LQSKLESRDWKIPVKVRGF 272 (382)
T ss_pred CCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCCHH--------HHHHHHhhcccCCeEEEec
Confidence 45677777666654322 2333333332 23556676664420 11112111 1234577899
Q ss_pred cChh-hhhccCCCcccccccCchhHHHHHhhCCceeccccccchh-hhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhc
Q 040486 341 APQQ-EVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQM-VNARYVSDVWKVGLHLERKLERGEVERTIRRVMT 418 (460)
Q Consensus 341 vp~~-~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~ 418 (460)
+++. ++++.+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|... -+++.|.++|.++++
T Consensus 273 ~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---~~~~~la~~i~~ll~ 346 (382)
T PLN02605 273 VTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---ESPKEIARIVAEWFG 346 (382)
T ss_pred cccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec---CCHHHHHHHHHHHHc
Confidence 9874 79999999 999999999999999999999988766665 799989985 999765 478999999999998
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 419 EAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
|. ++ ..++|++..++. .+..+..+.++.+.+..
T Consensus 347 ~~--~~---~~~~m~~~~~~~-~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 347 DK--SD---ELEAMSENALKL-ARPEAVFDIVHDLHELV 379 (382)
T ss_pred CC--HH---HHHHHHHHHHHh-cCCchHHHHHHHHHHHh
Confidence 61 22 223333333321 13445566666665554
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.43 E-value=3.1e-10 Score=109.75 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=79.2
Q ss_pred CCCCccccccChhh---hhccCCCcccccccC----chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCcc
Q 040486 332 DGRGHMVKWAPQQE---VLAHPATGGFWTHCG----WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKL 404 (460)
Q Consensus 332 ~~~~~v~~~vp~~~---~l~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 404 (460)
.+++.+.+++++.+ +++.+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+++. +.|...+. .
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~-~ 317 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEP-G 317 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCC-C
Confidence 34558889998764 7899999 886654 37899999999999986654 456677774 88887766 5
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 405 ERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
+.+++.++|.++++| +..+++..+-+.+.. +.-+.++.++++++.+
T Consensus 318 ~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 318 DAEAFAAALAALLAD---PELRRRMAARARAEA----ERRSWEAFLDNLLEAY 363 (364)
T ss_pred CHHHHHHHHHHHHcC---HHHHHHHHHHHHHHH----hhcCHHHHHHHHHHhh
Confidence 778899999999998 554443333333332 3455666677766654
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.39 E-value=1.4e-09 Score=109.14 Aligned_cols=125 Identities=11% Similarity=0.125 Sum_probs=81.5
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHcC-CCCEEEEEcCCccCCCccCCCCchhHHhhc-CCCCccccccChh---hhhcc
Q 040486 275 VIYVSFGSIAAINETEFLEVAWGLANS-KVPFLWVVRPGLVRGAEWIEPLPQGFLETL-DGRGHMVKWAPQQ---EVLAH 349 (460)
Q Consensus 275 ~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~v~~~vp~~---~~l~~ 349 (460)
.+++..|+.. ....+..++++++.. +.++++ ++.+. ..+.+.+.. ..++.+.+++++. .+++.
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~i-vG~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAF-VGDGP---------YREELEKMFAGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEE-EeCCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHHHH
Confidence 3445567765 344566677888776 455544 33321 112222221 2356778999865 48889
Q ss_pred CCCcccccccC----chhHHHHHhhCCceeccccccchhhhHHHHhh---hhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 350 PATGGFWTHCG----WNSTLESICEGVPMICQPCFGDQMVNARYVSD---VWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 350 ~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
+|+ +|.-.. -.++.||+++|+|+|+.... .....+++ . +.|..++. -+.+++.++|.++++|
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-GDVDDCVEKLETLLAD 400 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-CCHHHHHHHHHHHHhC
Confidence 999 775433 34789999999999986543 23444554 5 77887765 5789999999999998
No 46
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.33 E-value=1e-13 Score=115.00 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=79.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCC--CCCcccccccHHHHHHH--HHHh
Q 040486 17 LILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDS--LSETEASTADLVALLSL--LNVQ 92 (460)
Q Consensus 17 vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~ 92 (460)
|+|++.|+.||++|+++||++|++|||+|++++++...+...+ .|++|.+++.. ++............... ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-AGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLEE 79 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-TT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-cCceEEEecCCcCcCcccchhhhhhhHHHHhhhhhH
Confidence 7899999999999999999999999999999999877776654 69999999765 11100011111111111 1111
Q ss_pred cchhHHHHHHHHh-cccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEeccc
Q 040486 93 CVVPFRNCLAKLL-SNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNS 146 (460)
Q Consensus 93 ~~~~l~~~l~~l~-~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~ 146 (460)
....+.+...+.. ...+ ...+|+++.+.....+..+|+++|||++.....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 80 AMRILARFRPDLVVAAGG---YVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHCCCCHCTT---TTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred HHHHhhccCcchhhhccC---cccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 1222222111111 1110 1357888888888889999999999999987664
No 47
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.32 E-value=1.6e-09 Score=105.42 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=77.5
Q ss_pred CCCccccccCh-hhhhccCCCcccccc----cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHH
Q 040486 333 GRGHMVKWAPQ-QEVLAHPATGGFWTH----CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERG 407 (460)
Q Consensus 333 ~~~~v~~~vp~-~~~l~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 407 (460)
+++.+.++.++ .+++..+++ +|.- |.-.++.||+++|+|+|+. |....+..+++. ..|...+. -+.+
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s----~~~~~~e~i~~~-~~G~~~~~-~~~~ 324 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVAS----NAGGIPEVVKHG-ETGFLVDV-GDVE 324 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEe----CCCCchhhhcCC-CceEEcCC-CCHH
Confidence 45567787776 468899998 6632 3345999999999999984 444566777774 67876665 5789
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 040486 408 EVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILSF 460 (460)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
++.+++.++++| +..++..++ ..++...+.-+.+..++++.+.++++
T Consensus 325 ~l~~~i~~l~~~---~~~~~~~~~---~~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 325 AMAEYALSLLED---DELWQEFSR---AARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHhC---HHHHHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999998 443332222 22221124455777888888877653
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.32 E-value=3.3e-09 Score=104.28 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=60.6
Q ss_pred CCCccccccChhh---hhccCCCccccc---ccCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccC
Q 040486 333 GRGHMVKWAPQQE---VLAHPATGGFWT---HCGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLE 405 (460)
Q Consensus 333 ~~~~v~~~vp~~~---~l~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 405 (460)
+++.+.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+. |.......+.+. ..|..++. -+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~-~~G~lv~~-~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDG-ENGLLVDF-FD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccC-CceEEcCC-CC
Confidence 5677889999764 6778888 653 2233 4899999999999984 444566677763 67877765 57
Q ss_pred HHHHHHHHHHHhcc
Q 040486 406 RGEVERTIRRVMTE 419 (460)
Q Consensus 406 ~~~l~~~i~~ll~~ 419 (460)
.+++.++|.++++|
T Consensus 353 ~~~la~~i~~ll~~ 366 (396)
T cd03818 353 PDALAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999999
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.28 E-value=2.6e-09 Score=103.97 Aligned_cols=333 Identities=15% Similarity=0.079 Sum_probs=162.8
Q ss_pred EEEEEcCCC----ccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--------CCCCeeEEecCCCCCCcccccccHH
Q 040486 16 RLILFPLPL----QGHINPMLQLANILYSKGFSITIIHTNFNSPNPS--------NYPHFTFCSIEDSLSETEASTADLV 83 (460)
Q Consensus 16 ~vl~~~~~~----~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (460)
||++++... .|+......++++|.++||+|++++......... ...++.+..++...... ....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 76 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKK----NGLL 76 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCc----cchH
Confidence 566665432 4899999999999999999999998764332221 12466666655322111 1110
Q ss_pred HHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCc----hhHHHHHHHcCCceEEEecccHHHHHHHHhcchh
Q 040486 84 ALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATW----YFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVL 159 (460)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 159 (460)
..+....... ......+.... .+||+|++.... ..+..++...++|++...........
T Consensus 77 ~~~~~~~~~~----~~~~~~~~~~~-----~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------- 139 (394)
T cd03794 77 KRLLNYLSFA----LSALLALLKRR-----RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESA-------- 139 (394)
T ss_pred HHHHhhhHHH----HHHHHHHHhcc-----cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhH--------
Confidence 0011111111 11111121011 589999999622 22344566679999885443110000
Q ss_pred hccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHH-HHhhcccccEEEEcChhHhhHHHHHHhhhcC-CC
Q 040486 160 SQKGYFPIRDSQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTE-ATNQMKVSSGCIWNSLQDLELASLTKFHQDF-PI 237 (460)
Q Consensus 160 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~ 237 (460)
...... ............ ....+..++.++..+....+.-. .... ..
T Consensus 140 ~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~----~~~~~~~ 188 (394)
T cd03794 140 VALGLL---------------------------KNGSLLYRLLRKLERLIYRRADAIVVISPGMREYLV----RRGVPPE 188 (394)
T ss_pred HHccCc---------------------------cccchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHH----hcCCCcC
Confidence 000000 000000011111 12234567777776654433211 0111 12
Q ss_pred CccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEcccccc-CCHHHHHHHHHHHHcC-CCCEEEEEcCCccC
Q 040486 238 PMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAA-INETEFLEVAWGLANS-KVPFLWVVRPGLVR 315 (460)
Q Consensus 238 p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~ 315 (460)
++..+......... ............. ...++.+++..|+... ...+.+-..+..+.+. +.++++ ++.+..
T Consensus 189 ~~~~i~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~~- 261 (394)
T cd03794 189 KISVIPNGVDLELF---KPPPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGPE- 261 (394)
T ss_pred ceEEcCCCCCHHHc---CCccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCccc-
Confidence 34444322221110 0000000001111 1234566667787654 2233333333333333 344433 332210
Q ss_pred CCccCCCCchhHHhhcCCCCccccccChh---hhhccCCCcccccccC---------chhHHHHHhhCCceeccccccch
Q 040486 316 GAEWIEPLPQGFLETLDGRGHMVKWAPQQ---EVLAHPATGGFWTHCG---------WNSTLESICEGVPMICQPCFGDQ 383 (460)
Q Consensus 316 ~~~~~~~lp~~~~~~~~~~~~v~~~vp~~---~~l~~~~~~~~I~HgG---------~gs~~eal~~GvP~v~~P~~~DQ 383 (460)
...+.+.+.....+++.+.+++++. +++..+++ +|.... -+++.||+++|+|+|+.+..+.+
T Consensus 262 ----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~ 335 (394)
T cd03794 262 ----KEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA 335 (394)
T ss_pred ----HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch
Confidence 0001111112223566788999865 47888998 664322 23479999999999997765543
Q ss_pred hhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 384 MVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 384 ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+.+. +.|..++. -+.+++.++|.++++|
T Consensus 336 ----~~~~~~-~~g~~~~~-~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 336 ----ELVEEA-GAGLVVPP-GDPEALAAAILELLDD 365 (394)
T ss_pred ----hhhccC-CcceEeCC-CCHHHHHHHHHHHHhC
Confidence 344442 66766665 4789999999999988
No 50
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.27 E-value=1.2e-08 Score=100.77 Aligned_cols=162 Identities=13% Similarity=0.078 Sum_probs=92.8
Q ss_pred eEEEEEccccccCCHHHHHHHHHHHHcCC----CCEEEEEcCCccCCCccCCCCchhHHhh----cCCCCccccccChh-
Q 040486 274 SVIYVSFGSIAAINETEFLEVAWGLANSK----VPFLWVVRPGLVRGAEWIEPLPQGFLET----LDGRGHMVKWAPQQ- 344 (460)
Q Consensus 274 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~----~~~i~~~~~~~~~~~~~~~~lp~~~~~~----~~~~~~v~~~vp~~- 344 (460)
+.+++..|+... .+.+..+++|++.+. .+++ .++.+. ..+.+.+. -.+|+.+.+++|+.
T Consensus 229 ~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~-ivG~g~---------~~~~l~~~~~~~~l~~v~f~G~~~~~~ 296 (412)
T PRK10307 229 KKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFV-ICGQGG---------GKARLEKMAQCRGLPNVHFLPLQPYDR 296 (412)
T ss_pred CEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEE-EECCCh---------hHHHHHHHHHHcCCCceEEeCCCCHHH
Confidence 345556777653 344555666666542 2333 333321 11222211 11366788999875
Q ss_pred --hhhccCCCcccccccCc------hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHH
Q 040486 345 --EVLAHPATGGFWTHCGW------NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRV 416 (460)
Q Consensus 345 --~~l~~~~~~~~I~HgG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~l 416 (460)
++++.+|+.++.+..+. +.+.|++++|+|+|+....+.. ....++ +.|..++. -+.++|+++|.++
T Consensus 297 ~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~-~d~~~la~~i~~l 370 (412)
T PRK10307 297 LPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP-ESVEALVAAIAAL 370 (412)
T ss_pred HHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-CCHHHHHHHHHHH
Confidence 47888998444444332 2468999999999997654311 112222 45666655 5789999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 417 MTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 417 l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
++| +..++ +|++..++...+.-+.+..++++++.+++
T Consensus 371 ~~~---~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 371 ARQ---ALLRP---KLGTVAREYAERTLDKENVLRQFIADIRG 407 (412)
T ss_pred HhC---HHHHH---HHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 988 33322 23333332222445567777777777664
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.26 E-value=7.3e-09 Score=99.80 Aligned_cols=130 Identities=16% Similarity=0.169 Sum_probs=81.3
Q ss_pred CCeEEEEEccccccCCHHHHHHHHHHHHcC---CCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhh---
Q 040486 272 PKSVIYVSFGSIAAINETEFLEVAWGLANS---KVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQE--- 345 (460)
Q Consensus 272 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~--- 345 (460)
.++.+++..|+... ......++++++.+ +.++++. +...... ..........++.+.+++++.+
T Consensus 189 ~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~-G~~~~~~-------~~~~~~~~~~~v~~~g~~~~~~~~~ 258 (359)
T cd03823 189 GGRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIV-GNGLELE-------EESYELEGDPRVEFLGAYPQEEIDD 258 (359)
T ss_pred CCceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEE-cCchhhh-------HHHHhhcCCCeEEEeCCCCHHHHHH
Confidence 34456667777654 22334455555443 3454443 3322100 0000001235667889997654
Q ss_pred hhccCCCccccc----ccCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 346 VLAHPATGGFWT----HCGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 346 ~l~~~~~~~~I~----HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
+++.+++ +|+ ..|. .++.||+++|+|+|+.+. ..+...+.+. +.|...+. -+.+++.+++.++++|
T Consensus 259 ~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 259 FYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-GDAEDLAAALERLIDD 329 (359)
T ss_pred HHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-CCHHHHHHHHHHHHhC
Confidence 6889998 663 2333 489999999999998554 4566677773 67887766 4689999999999998
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.23 E-value=1.3e-08 Score=100.04 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=61.9
Q ss_pred CCCccccccChhh---hhccCCCccccccc---C-chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccC
Q 040486 333 GRGHMVKWAPQQE---VLAHPATGGFWTHC---G-WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLE 405 (460)
Q Consensus 333 ~~~~v~~~vp~~~---~l~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 405 (460)
+++.+.+++|+.+ ++..+++ +++.+ | -.++.||+++|+|+|+.... .....+++. +.|...+. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-~~ 354 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-RD 354 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC-CC
Confidence 5667889999765 5889998 77542 2 36899999999999986543 456667774 78888766 57
Q ss_pred HHHHHHHHHHHhcc
Q 040486 406 RGEVERTIRRVMTE 419 (460)
Q Consensus 406 ~~~l~~~i~~ll~~ 419 (460)
.+++.++|.++++|
T Consensus 355 ~~~l~~~i~~l~~~ 368 (398)
T cd03800 355 PEALAAALRRLLTD 368 (398)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999998
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.22 E-value=3.4e-08 Score=95.57 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=59.8
Q ss_pred CCCccccccChhh---hhccCCCccccccc----CchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccC
Q 040486 333 GRGHMVKWAPQQE---VLAHPATGGFWTHC----GWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLE 405 (460)
Q Consensus 333 ~~~~v~~~vp~~~---~l~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 405 (460)
+++.+.+++|+.+ ++..+++ +|..+ ...++.||+++|+|+|+.. ....+..+++. +.|..++. -+
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~-~~ 330 (374)
T cd03817 259 DRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPP-GD 330 (374)
T ss_pred CcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCC-CC
Confidence 5667889999754 7888998 66433 3478999999999999854 44566777774 78888876 22
Q ss_pred HHHHHHHHHHHhcc
Q 040486 406 RGEVERTIRRVMTE 419 (460)
Q Consensus 406 ~~~l~~~i~~ll~~ 419 (460)
. ++.+++.++++|
T Consensus 331 ~-~~~~~i~~l~~~ 343 (374)
T cd03817 331 E-ALAEALLRLLQD 343 (374)
T ss_pred H-HHHHHHHHHHhC
Confidence 2 899999999998
No 54
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.22 E-value=1.5e-08 Score=100.00 Aligned_cols=90 Identities=12% Similarity=0.161 Sum_probs=64.3
Q ss_pred CCccc-cccChh---hhhccCCCccccc-c---cC---chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC
Q 040486 334 RGHMV-KWAPQQ---EVLAHPATGGFWT-H---CG---WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER 402 (460)
Q Consensus 334 ~~~v~-~~vp~~---~~l~~~~~~~~I~-H---gG---~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 402 (460)
++.+. +|+|.. ++|+.+|+ +|. + -| -.++.||+++|+|+|+.. .......+++. +.|..++
T Consensus 295 ~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~----~~~~~eiv~~~-~~G~lv~- 366 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALD----FKCIDELVKHG-ENGLVFG- 366 (415)
T ss_pred cEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeC----CCCHHHHhcCC-CCEEEEC-
Confidence 33444 688865 46889999 663 1 12 347999999999999844 34566778774 7887773
Q ss_pred ccCHHHHHHHHHHHhcc---ch-HHHHHHHHHHHH
Q 040486 403 KLERGEVERTIRRVMTE---AE-GQEIRVRIMILK 433 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~---~~-~~~~~~~a~~~~ 433 (460)
+.++|+++|.++++| .+ ...|++++++.+
T Consensus 367 --d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 --DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred --CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 789999999999998 33 556666666655
No 55
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=1.2e-09 Score=96.00 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=104.9
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcC--CCCccccccChh-hhhcc
Q 040486 273 KSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLD--GRGHMVKWAPQQ-EVLAH 349 (460)
Q Consensus 273 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~v~~~vp~~-~~l~~ 349 (460)
..-|+|++|..- +....-.++..+.+..+.+=++++.. ..-+++..++.. +|+.+......+ .++..
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke 227 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKE 227 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--------CcchhHHHHHHhhCCCeeeEecchhHHHHHHh
Confidence 345999998632 34455667888888775554555522 123344444433 344444444433 69999
Q ss_pred CCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchHHHHHHHH
Q 040486 350 PATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEGQEIRVRI 429 (460)
Q Consensus 350 ~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a 429 (460)
|++ .|+-||. |+.|++.-|+|.+++|+.-.|---|...+. +|+-..+.-.++.+....-+.++.+| ...|.+.
T Consensus 228 ~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l 300 (318)
T COG3980 228 ADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNL 300 (318)
T ss_pred cch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhh
Confidence 999 9988886 899999999999999999999999999999 59988886557888888888899999 6666655
Q ss_pred HHHHHHH
Q 040486 430 MILKEKL 436 (460)
Q Consensus 430 ~~~~~~~ 436 (460)
-.-++.+
T Consensus 301 ~~~~~~i 307 (318)
T COG3980 301 SFGSKLI 307 (318)
T ss_pred hhcccee
Confidence 5444443
No 56
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.20 E-value=1.9e-08 Score=97.50 Aligned_cols=114 Identities=12% Similarity=0.051 Sum_probs=77.3
Q ss_pred CCCccccccC-hh---hhhccCCCccccccc----CchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCcc
Q 040486 333 GRGHMVKWAP-QQ---EVLAHPATGGFWTHC----GWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKL 404 (460)
Q Consensus 333 ~~~~v~~~vp-~~---~~l~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 404 (460)
.++.+.+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+... ......+.+. +.|..++. .
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~-~ 315 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP-G 315 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC-C
Confidence 4457779998 43 47889998 77753 35799999999999997543 3344455553 57766655 5
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 040486 405 ERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILSF 460 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
+.+++.+++.++++| +..++ ++++..++...+.-+.+..++++++.++++
T Consensus 316 ~~~~~~~~l~~l~~~---~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 316 DPEDLAEGIEWLLAD---PDERE---ELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred CHHHHHHHHHHHHhC---HHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 789999999999998 44222 222322222224566777888888877653
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.16 E-value=8.4e-08 Score=92.11 Aligned_cols=314 Identities=14% Similarity=0.106 Sum_probs=161.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhcch
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQCVV 95 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
||++++....|+......++++|.+.||+|++++............+++++.++.... .......+..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------- 68 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRR-----GINPFKDLKA------- 68 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecccccc-----ccChHhHHHH-------
Confidence 5787877778889999999999999999999998865443212225777777763321 0011111111
Q ss_pred hHHHHHHHHhcccccccCCCeeEEEecCCc--hhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCCCCC
Q 040486 96 PFRNCLAKLLSNVEEEEKEPIACLITDATW--YFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDSQSE 173 (460)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 173 (460)
+..+.+.+.+ .+||+|++.... ..+..+++..+.|.+.......... . ...
T Consensus 69 -~~~~~~~~~~-------~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~------~~~---------- 121 (359)
T cd03808 69 -LLRLYRLLRK-------ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV---F------TSG---------- 121 (359)
T ss_pred -HHHHHHHHHh-------cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh---h------ccc----------
Confidence 1122222322 479999987643 2344455546677666443311000 0 000
Q ss_pred ccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCC---CCccccCCCCcCCC
Q 040486 174 APVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFP---IPMFPIGPFHKFFS 250 (460)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~p~~~vG~l~~~~~ 250 (460)
........... ....+.++.++..+....+. +..... .....+.+...+..
T Consensus 122 -------------------~~~~~~~~~~~--~~~~~~~d~ii~~s~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 175 (359)
T cd03808 122 -------------------GLKRRLYLLLE--RLALRFTDKVIFQNEDDRDL-----ALKLGIIKKKKTVLIPGSGVDLD 175 (359)
T ss_pred -------------------hhHHHHHHHHH--HHHHhhccEEEEcCHHHHHH-----HHHhcCCCcCceEEecCCCCChh
Confidence 00000111111 11234557777766544332 122111 12222222222211
Q ss_pred CCCcccccCccccccccCCCCCCeEEEEEcccccc-CCHHHHHHHHHHHHcC--CCCEEEEEcCCccCCCccCCCCchh-
Q 040486 251 ASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAA-INETEFLEVAWGLANS--KVPFLWVVRPGLVRGAEWIEPLPQG- 326 (460)
Q Consensus 251 ~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~- 326 (460)
. .... ... ..+++.+++..|+... ...+.+-+.+..+.+. +.++++ ++...... .....
T Consensus 176 ~-----~~~~---~~~---~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i-~G~~~~~~-----~~~~~~ 238 (359)
T cd03808 176 R-----FSPS---PEP---IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLL-VGDGDEEN-----PAAILE 238 (359)
T ss_pred h-----cCcc---ccc---cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEE-EcCCCcch-----hhHHHH
Confidence 1 0000 000 1234567777887654 2233333333333332 234433 33322110 00000
Q ss_pred HHh-hcCCCCccccccCh-hhhhccCCCcccccccC----chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeee
Q 040486 327 FLE-TLDGRGHMVKWAPQ-QEVLAHPATGGFWTHCG----WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHL 400 (460)
Q Consensus 327 ~~~-~~~~~~~v~~~vp~-~~~l~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~ 400 (460)
+.+ ...+++.+.++..+ ..++..+++ +|.-+. -+++.||+++|+|+|+.+.. .+...+++. +.|...
T Consensus 239 ~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~ 311 (359)
T cd03808 239 IEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLV 311 (359)
T ss_pred HHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEE
Confidence 111 12245566677554 468999998 775443 57999999999999985443 345666764 778777
Q ss_pred CCccCHHHHHHHHHHHhcc
Q 040486 401 ERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 401 ~~~~~~~~l~~~i~~ll~~ 419 (460)
+. -+.+++.++|.++++|
T Consensus 312 ~~-~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 312 PP-GDAEALADAIERLIED 329 (359)
T ss_pred CC-CCHHHHHHHHHHHHhC
Confidence 65 5789999999999998
No 58
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.14 E-value=9.2e-08 Score=92.05 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=77.7
Q ss_pred CCCCccccccChh---hhhccCCCccccc----ccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCcc
Q 040486 332 DGRGHMVKWAPQQ---EVLAHPATGGFWT----HCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKL 404 (460)
Q Consensus 332 ~~~~~v~~~vp~~---~~l~~~~~~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 404 (460)
.+++.+.+++++. .++..+++ +|+ -|..+++.||+++|+|+|+.+. ......+++. +.|...+. .
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~-~ 326 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP-G 326 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-C
Confidence 4566788999754 47888998 663 3456799999999999998554 5567777764 78887766 5
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 405 ERGEVERTIRRVMTEAEGQEIRVRIMI-LKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
+.+++.+++.++++| +..++...+ ..+.+. +.-+.++..+++.+.+
T Consensus 327 ~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 327 DPEALAEAILRLLDD---PELRRRLGEAARERVA----ERFSWDRVAARTEEVY 373 (374)
T ss_pred CHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHhh
Confidence 689999999999998 444333222 222333 4555666777766654
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.11 E-value=2.2e-07 Score=88.75 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=61.2
Q ss_pred CCccccccCh-hhhhccCCCcccccccC----chhHHHHHhhCCceeccccccchhhhHHHHhhhhc-ceeeeCCccCHH
Q 040486 334 RGHMVKWAPQ-QEVLAHPATGGFWTHCG----WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWK-VGLHLERKLERG 407 (460)
Q Consensus 334 ~~~v~~~vp~-~~~l~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~g~~~~~~~~~~ 407 (460)
++.+.++... ..++..+++ +|.-+. -+++.||+++|+|+|+.+..+.+ ..+... | .|...+. .+.+
T Consensus 236 ~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~-~~~~ 307 (348)
T cd03820 236 RVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN-GDVE 307 (348)
T ss_pred eEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC-CCHH
Confidence 4455666443 468889998 775542 46899999999999986544433 233343 5 7777765 5689
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHH
Q 040486 408 EVERTIRRVMTEAEGQEIRVRIMILK 433 (460)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~~a~~~~ 433 (460)
++.++|.++++| ++.+++..+-+
T Consensus 308 ~~~~~i~~ll~~---~~~~~~~~~~~ 330 (348)
T cd03820 308 ALAEALLRLMED---EELRKRMGANA 330 (348)
T ss_pred HHHHHHHHHHcC---HHHHHHHHHHH
Confidence 999999999999 55554444433
No 60
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.10 E-value=1.2e-07 Score=93.45 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=74.7
Q ss_pred CCCccccccChh---hhhccCCCccccc---ccCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccC
Q 040486 333 GRGHMVKWAPQQ---EVLAHPATGGFWT---HCGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLE 405 (460)
Q Consensus 333 ~~~~v~~~vp~~---~~l~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 405 (460)
+++.+.+++|+. ++++.+++ +|. +.|. .++.||+++|+|+|+... ......+++. +.|..++. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d 354 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG-HD 354 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC-CC
Confidence 467888999865 57899998 663 2343 589999999999998554 3455567773 77877765 57
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 406 RGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 406 ~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
.+++.++|.++++| +..+++..+-+.... +.-+-++.++++++.+.
T Consensus 355 ~~~la~~i~~~l~~---~~~~~~~~~~~~~~~----~~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 355 PADWADALARLLDD---PRTRIRMGAAAVEHA----AGFSWAATADGLLSSYR 400 (405)
T ss_pred HHHHHHHHHHHHhC---HHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHH
Confidence 89999999999998 444333333222222 22445556666666554
No 61
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.10 E-value=7.4e-08 Score=94.75 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=69.0
Q ss_pred CCCccccccChh---hhhccCCCccccc---ccCch-hHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccC
Q 040486 333 GRGHMVKWAPQQ---EVLAHPATGGFWT---HCGWN-STLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLE 405 (460)
Q Consensus 333 ~~~~v~~~vp~~---~~l~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 405 (460)
+++.+.+|+|+. .+++.+|+ +|. +-|.| ++.||+++|+|+|+.+..+ ....+.+ |.+.... -+
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--~~ 319 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--PD 319 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC--CC
Confidence 456778999864 47888998 654 22443 9999999999999966643 3344544 4443332 27
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 406 RGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 406 ~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
.+++.+++.+++++.. -+. .+.+..+....+.-+.++.++++++.+++
T Consensus 320 ~~~l~~~l~~~l~~~~---~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 320 VESIVRKLEEAISILR---TGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDR 367 (398)
T ss_pred HHHHHHHHHHHHhChh---hhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 8999999999998621 110 11122222222455666666666665543
No 62
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.08 E-value=1.3e-07 Score=94.24 Aligned_cols=112 Identities=11% Similarity=0.116 Sum_probs=74.8
Q ss_pred CCCCccccccChhh---hhccC----CCccccccc---C-chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeee
Q 040486 332 DGRGHMVKWAPQQE---VLAHP----ATGGFWTHC---G-WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHL 400 (460)
Q Consensus 332 ~~~~~v~~~vp~~~---~l~~~----~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~ 400 (460)
.+++.+.+++++.+ +++.+ |+ ||..+ | -.++.||+++|+|+|+... ......+++. ..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEe
Confidence 45666777777655 46654 66 87654 4 3599999999999998543 4455666663 678777
Q ss_pred CCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 401 ERKLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 401 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
+. -+.++|.++|.++++| +..+ ++|++..++...+.-+-...++++.+.|
T Consensus 389 ~~-~d~~~la~~i~~ll~~---~~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 389 DV-LDLEAIASALEDALSD---SSQW---QLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CC-CCHHHHHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 66 5789999999999998 4433 3344444333334455666666666654
No 63
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.07 E-value=2.5e-07 Score=90.80 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=58.7
Q ss_pred CCCCccccccChh---hhhccCCCccccccc---C-chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCcc
Q 040486 332 DGRGHMVKWAPQQ---EVLAHPATGGFWTHC---G-WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKL 404 (460)
Q Consensus 332 ~~~~~v~~~vp~~---~~l~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 404 (460)
.+++.+.+++|+. .++..+++ ++... | -.++.||+++|+|+|+.-. ......+.+. +.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeCC--
Confidence 3567888999976 47888998 66422 2 2578999999999998543 3344556663 67766643
Q ss_pred CHHHHHHHHHHHhcc
Q 040486 405 ERGEVERTIRRVMTE 419 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~ 419 (460)
+.+++.++|.++++|
T Consensus 350 ~~~~~a~~i~~l~~~ 364 (392)
T cd03805 350 TPEEFAEAMLKLAND 364 (392)
T ss_pred CHHHHHHHHHHHHhC
Confidence 789999999999998
No 64
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.04 E-value=6.6e-07 Score=86.31 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=76.2
Q ss_pred CCCccccccChh---hhhccCCCccccc----ccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccC
Q 040486 333 GRGHMVKWAPQQ---EVLAHPATGGFWT----HCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLE 405 (460)
Q Consensus 333 ~~~~v~~~vp~~---~~l~~~~~~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 405 (460)
+++.+.+++++. .++..+++ +|. -|.-+++.||+++|+|+|+-+. ......+++. +.|...+. -+
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~-~~ 330 (377)
T cd03798 259 DRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPP-GD 330 (377)
T ss_pred ceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECC-CC
Confidence 566788999875 57888888 552 2456789999999999998544 3455667774 77777765 68
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 406 RGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 406 ~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
.+++.+++.+++++ +.. +..++..+.+. +.-+.+..++++.+.+++
T Consensus 331 ~~~l~~~i~~~~~~---~~~-~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 331 PEALAEAILRLLAD---PWL-RLGRAARRRVA----ERFSWENVAERLLELYRE 376 (377)
T ss_pred HHHHHHHHHHHhcC---cHH-HHhHHHHHHHH----HHhhHHHHHHHHHHHHhh
Confidence 89999999999998 442 22222222222 333466677777777765
No 65
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.04 E-value=3.3e-09 Score=102.98 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=84.2
Q ss_pred CCeEEEEEccccccC-CHHHHHHHHHHHHcCCC-CEEEEEcCCccCCCccCCCCchhHHhhc--CCCCccccccChh---
Q 040486 272 PKSVIYVSFGSIAAI-NETEFLEVAWGLANSKV-PFLWVVRPGLVRGAEWIEPLPQGFLETL--DGRGHMVKWAPQQ--- 344 (460)
Q Consensus 272 ~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~v~~~vp~~--- 344 (460)
+++.+++++|..... ..+.+..++++++.+.. ++.+...+... . ...+-+.+.+.. .+++.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~-~---~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR-T---RPRIREAGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC-h---HHHHHHHHHhhccCCCCEEEECCcCHHHHH
Confidence 456777788876543 45667788888877643 24444332210 0 011111111111 2455666655543
Q ss_pred hhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 345 EVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 345 ~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
.++..+++ +|+.+| |.+.||++.|+|+|+++...+ +..+.+. |++..+.. +.++|.+++.+++++
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~-g~~~~~~~--~~~~i~~~i~~ll~~ 337 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVES-GTNVLVGT--DPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhhe-eeEEecCC--CHHHHHHHHHHHhcC
Confidence 56788999 999999 888899999999999874322 3334443 77755532 589999999999998
No 66
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.01 E-value=1e-06 Score=93.18 Aligned_cols=367 Identities=12% Similarity=0.118 Sum_probs=181.6
Q ss_pred CCCcEEEEEcCC-C--------------ccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCC--------C---------
Q 040486 12 KKGRRLILFPLP-L--------------QGHINPMLQLANILYSKG--FSITIIHTNFNSPN--------P--------- 57 (460)
Q Consensus 12 ~~~~~vl~~~~~-~--------------~GH~~p~l~La~~L~~~G--h~Vt~~~~~~~~~~--------~--------- 57 (460)
.++|.|++++.. . -|+..=.+.||++|+++| |+|.++|-....+. .
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 347889888532 2 134455689999999998 89999977532211 0
Q ss_pred ------CCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCc--hhHH
Q 040486 58 ------SNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATW--YFTQ 129 (460)
Q Consensus 58 ------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~--~~~~ 129 (460)
...+|+..+.+|-+-.........++..+..+.+.+...+....+.+......+.+..||+|-+.... ..+.
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~ 326 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAA 326 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHH
Confidence 01147888888755332233334444445444444433333221112111100001359999888533 5667
Q ss_pred HHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhc
Q 040486 130 AVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDSQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQM 209 (460)
Q Consensus 130 ~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 209 (460)
.+++.+|||+|....+... ... ......+..+.. .. .........+.--...+
T Consensus 327 ~L~~~lgVP~V~T~HSLgr----~K~-~~ll~~g~~~~~-----------------~~-----~~~y~~~~Ri~~Ee~~l 379 (1050)
T TIGR02468 327 LLSGALNVPMVLTGHSLGR----DKL-EQLLKQGRMSKE-----------------EI-----NSTYKIMRRIEAEELSL 379 (1050)
T ss_pred HHHHhhCCCEEEECccchh----hhh-hhhccccccccc-----------------cc-----ccccchHHHHHHHHHHH
Confidence 8999999998886554210 000 000000000000 00 00001112222222345
Q ss_pred ccccEEEEcChhHhhHHH-HHH-hhhc------------------CCCC--ccccCCCCcCCCCC-Cc------------
Q 040486 210 KVSSGCIWNSLQDLELAS-LTK-FHQD------------------FPIP--MFPIGPFHKFFSAS-SS------------ 254 (460)
Q Consensus 210 ~~~~~~l~~~~~~l~~~~-~~~-~~~~------------------~~~p--~~~vG~l~~~~~~~-~~------------ 254 (460)
..++.++.+|..+-+.-+ +.. +.+. +.+. +++-|--.....+. ..
T Consensus 380 ~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~ 459 (1050)
T TIGR02468 380 DASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHP 459 (1050)
T ss_pred HhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhccccccc
Confidence 678888888877665311 100 0000 0112 33333111000000 00
Q ss_pred --ccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCC-----CCEEEEEcCCccCCCccCC----CC
Q 040486 255 --SLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSK-----VPFLWVVRPGLVRGAEWIE----PL 323 (460)
Q Consensus 255 --~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~~~----~l 323 (460)
...+.+.++..|+.. +++++ ++..|.... .+.+..+++|+..+. ..+.+.++...... + .. ..
T Consensus 460 ~~~~~~~~~~l~r~~~~-pdkpv-IL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d-~-l~~~~~~~ 533 (1050)
T TIGR02468 460 AKPDPPIWSEIMRFFTN-PRKPM-ILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRDDID-E-MSSGSSSV 533 (1050)
T ss_pred ccccchhhHHHHhhccc-CCCcE-EEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhh-h-hhccchHH
Confidence 000011234455543 34443 345566553 344556677776542 23444444321100 0 00 00
Q ss_pred chhHH---h--hcCCCCccccccChhh---hhccC----CCcccccc---cCc-hhHHHHHhhCCceeccccccchhhhH
Q 040486 324 PQGFL---E--TLDGRGHMVKWAPQQE---VLAHP----ATGGFWTH---CGW-NSTLESICEGVPMICQPCFGDQMVNA 387 (460)
Q Consensus 324 p~~~~---~--~~~~~~~v~~~vp~~~---~l~~~----~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na 387 (460)
-..+. + ...+++.+.+++++.+ +++.+ ++ ||+- =|. .++.||+++|+|+|+.... ...
T Consensus 534 l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~ 607 (1050)
T TIGR02468 534 LTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPV 607 (1050)
T ss_pred HHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcH
Confidence 01111 1 1235566778888754 56655 46 7764 343 5899999999999996543 344
Q ss_pred HHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 388 RYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 388 ~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+++. ..|..++. -+.+.|+++|.++++|
T Consensus 608 EII~~g-~nGlLVdP-~D~eaLA~AL~~LL~D 637 (1050)
T TIGR02468 608 DIHRVL-DNGLLVDP-HDQQAIADALLKLVAD 637 (1050)
T ss_pred HHhccC-CcEEEECC-CCHHHHHHHHHHHhhC
Confidence 556663 67877776 6889999999999999
No 67
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.00 E-value=2.7e-08 Score=96.66 Aligned_cols=158 Identities=13% Similarity=0.162 Sum_probs=94.1
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHcC-----CCCEEEEEcCCccCCCccCCCCchhHHhhc--CCCCccccccChh-
Q 040486 273 KSVIYVSFGSIAAINETEFLEVAWGLANS-----KVPFLWVVRPGLVRGAEWIEPLPQGFLETL--DGRGHMVKWAPQQ- 344 (460)
Q Consensus 273 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~v~~~vp~~- 344 (460)
+++++++++-... ..+.+..+++++.++ +.++++...++.. .-..+.+.. .+++++.+.+++.
T Consensus 197 ~~~vl~~~hr~~~-~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRREN-VGEPLENIFKAIREIVEEFEDVQIVYPVHLNPV--------VREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhh-hhhHHHHHHHHHHHHHHHCCCCEEEEECCCChH--------HHHHHHHHhCCCCCEEEECCCChHH
Confidence 3566666543221 124466677777664 3455555433210 111122211 2456777766654
Q ss_pred --hhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchH
Q 040486 345 --EVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEG 422 (460)
Q Consensus 345 --~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~ 422 (460)
.+++.+++ +|+-+|.. +.||+++|+|+|.++..++++. +... |.+..+. .+.+.|.+++.++++|
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~--~d~~~i~~ai~~ll~~--- 334 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG--TDKENITKAAKRLLTD--- 334 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC--CCHHHHHHHHHHHHhC---
Confidence 56788888 99987654 7999999999999876665552 2333 7665553 4789999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 040486 423 QEIRVRIMILKEKLNLCLIQGGSSYQSLESLISY 456 (460)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 456 (460)
+..+++..+-...+. +++++.+.++.+.++
T Consensus 335 ~~~~~~~~~~~~~~g----~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 335 PDEYKKMSNASNPYG----DGEASERIVEELLNH 364 (365)
T ss_pred hHHHHHhhhcCCCCc----CchHHHHHHHHHHhh
Confidence 665554433222222 455555555555543
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.98 E-value=1.4e-06 Score=84.17 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=55.8
Q ss_pred CCCccccccChhh---hhccCCCccccccc---C-chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccC
Q 040486 333 GRGHMVKWAPQQE---VLAHPATGGFWTHC---G-WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLE 405 (460)
Q Consensus 333 ~~~~v~~~vp~~~---~l~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 405 (460)
+++.+.+++++.+ ++..+++ +|.-. | -.++.||+++|+|+|+.+.. .....+.+ +.|...+. +
T Consensus 262 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~--~ 331 (375)
T cd03821 262 DRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD--D 331 (375)
T ss_pred ceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC--C
Confidence 5667889999654 6788888 55432 2 46899999999999996543 33444443 56665554 4
Q ss_pred HHHHHHHHHHHhcc
Q 040486 406 RGEVERTIRRVMTE 419 (460)
Q Consensus 406 ~~~l~~~i~~ll~~ 419 (460)
.+++.++|.++++|
T Consensus 332 ~~~~~~~i~~l~~~ 345 (375)
T cd03821 332 VDALAAALRRALEL 345 (375)
T ss_pred hHHHHHHHHHHHhC
Confidence 49999999999998
No 69
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.97 E-value=1e-07 Score=89.56 Aligned_cols=300 Identities=14% Similarity=0.071 Sum_probs=156.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC--CCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHh
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNS--PNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQ 92 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
|||.+--. ...|+.-+-.++++|.++||+|.+.+-+... +.... -|+++..+...- .+....+......
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~-yg~~y~~iG~~g-------~~~~~Kl~~~~~R 71 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL-YGIDYIVIGKHG-------DSLYGKLLESIER 71 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH-cCCCeEEEcCCC-------CCHHHHHHHHHHH
Confidence 67766543 3449999999999999999999999886543 22334 389988885321 1222222222111
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCCCC
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDSQS 172 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 172 (460)
. ..+++.+.+ .+||++|+-. +..+..+|..+|+|+|.+.-+...... +.-..|..+..
T Consensus 72 ~----~~l~~~~~~-------~~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~a~~~---------~~Lt~Pla~~i- 129 (335)
T PF04007_consen 72 Q----YKLLKLIKK-------FKPDVAISFG-SPEAARVAFGLGIPSIVFNDTEHAIAQ---------NRLTLPLADVI- 129 (335)
T ss_pred H----HHHHHHHHh-------hCCCEEEecC-cHHHHHHHHHhCCCeEEEecCchhhcc---------ceeehhcCCee-
Confidence 1 122333332 5799999764 566778999999999998776322110 11111111000
Q ss_pred CccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEE-EcChhHhhHHHHHHhhhcCCCCccccCCCCcCCCC
Q 040486 173 EAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCI-WNSLQDLELASLTKFHQDFPIPMFPIGPFHKFFSA 251 (460)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~~~~ 251 (460)
..|.. .. ...+.+.+ .+ ..+. ++.+.++ .++-|
T Consensus 130 --~~P~~--------------~~---~~~~~~~G---~~-~~i~~y~G~~E~----------------ayl~~------- 163 (335)
T PF04007_consen 130 --ITPEA--------------IP---KEFLKRFG---AK-NQIRTYNGYKEL----------------AYLHP------- 163 (335)
T ss_pred --ECCcc--------------cC---HHHHHhcC---Cc-CCEEEECCeeeE----------------EeecC-------
Confidence 00000 00 00000000 00 0111 2222111 11111
Q ss_pred CCcccccCccccccccCCCCCCeEEEEEcccccc----CCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhH
Q 040486 252 SSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAA----INETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGF 327 (460)
Q Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~ 327 (460)
+.++.+..+-+.. ++++.|++=+-+..+ .....+..+++.+++.+..++....... .++-+
T Consensus 164 -----F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~---------~~~~~ 228 (335)
T PF04007_consen 164 -----FKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED---------QRELF 228 (335)
T ss_pred -----CCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc---------hhhHH
Confidence 1111223333332 245666666655433 2334566788999888776554443322 11111
Q ss_pred HhhcCCCCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCH
Q 040486 328 LETLDGRGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLER 406 (460)
Q Consensus 328 ~~~~~~~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 406 (460)
+.. ++.+. .-+...++|.++++ +|+-|| ....||..-|+|.|.+ +.++-...-+.+.+. |+- . ...+.
T Consensus 229 -~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gll--~-~~~~~ 297 (335)
T PF04007_consen 229 -EKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GLL--Y-HSTDP 297 (335)
T ss_pred -hcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CCe--E-ecCCH
Confidence 111 12222 44555689999999 998777 7889999999999985 223322333456663 652 2 22466
Q ss_pred HHHHHHHHHHh
Q 040486 407 GEVERTIRRVM 417 (460)
Q Consensus 407 ~~l~~~i~~ll 417 (460)
+++.+.+.+.+
T Consensus 298 ~ei~~~v~~~~ 308 (335)
T PF04007_consen 298 DEIVEYVRKNL 308 (335)
T ss_pred HHHHHHHHHhh
Confidence 66666555443
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.97 E-value=1.3e-07 Score=93.90 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=55.6
Q ss_pred hhhhccCCCcccccc-----cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhc
Q 040486 344 QEVLAHPATGGFWTH-----CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMT 418 (460)
Q Consensus 344 ~~~l~~~~~~~~I~H-----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~ 418 (460)
..+++.+|+ ++.. +|..++.||+++|+|+|+-|..+++......+.+. |+++.. -+.++|.+++.++++
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~---~d~~~La~~l~~ll~ 387 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV---EDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE---CCHHHHHHHHHHHhc
Confidence 367888887 4432 33446999999999999999988888888887774 777653 367999999999999
Q ss_pred c
Q 040486 419 E 419 (460)
Q Consensus 419 ~ 419 (460)
|
T Consensus 388 ~ 388 (425)
T PRK05749 388 D 388 (425)
T ss_pred C
Confidence 8
No 71
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.96 E-value=7.9e-07 Score=85.95 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=70.6
Q ss_pred CCCcccc-ccChh---hhhccCCCccccc--c----cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC
Q 040486 333 GRGHMVK-WAPQQ---EVLAHPATGGFWT--H----CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER 402 (460)
Q Consensus 333 ~~~~v~~-~vp~~---~~l~~~~~~~~I~--H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 402 (460)
+++.+.+ |+|+. .+++.+++ +|. . |-.+++.||+++|+|+|+.+..+ ...+.+. +.|...+.
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcC
Confidence 4556664 58864 57888888 663 2 33568999999999999976654 3445553 77777765
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 403 KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
-+.+++.+++.++++| +..+.+. ++..++...+ -+-++.++++.+.+
T Consensus 319 -~d~~~~~~~l~~l~~~---~~~~~~~---~~~~~~~~~~-~s~~~~~~~~~~~~ 365 (366)
T cd03822 319 -GDPAALAEAIRRLLAD---PELAQAL---RARAREYARA-MSWERVAERYLRLL 365 (366)
T ss_pred -CCHHHHHHHHHHHHcC---hHHHHHH---HHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 4689999999999998 3333322 2222222223 45666666666554
No 72
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.96 E-value=5e-07 Score=87.23 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=82.0
Q ss_pred eEEEEEccccccCCHHHHHHHHHHHHcCC-CCEEEEEcCCccCCCccCCCCchhHHh-----hcCCCCccccccChh---
Q 040486 274 SVIYVSFGSIAAINETEFLEVAWGLANSK-VPFLWVVRPGLVRGAEWIEPLPQGFLE-----TLDGRGHMVKWAPQQ--- 344 (460)
Q Consensus 274 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~~~v~~~vp~~--- 344 (460)
..+++..|+... ......++++++++. .++++.-.+. ....+.+ ...+|+.+.+|+|+.
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~----------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGP----------LEAELEALAAALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCCh----------hHHHHHHHHHhcCCcceEEEcCCCCHHHHH
Confidence 345667777653 344556778887776 4444433221 1112211 223577889999975
Q ss_pred hhhccCCCccccc---ccCc-hhHHHHHhhCCceeccccccchhhhHHHHh-hhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 345 EVLAHPATGGFWT---HCGW-NSTLESICEGVPMICQPCFGDQMVNARYVS-DVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 345 ~~l~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~-~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
.+++.+++.++-+ +.|. .++.||+++|+|+|+....+.. ..+. +. +.|...+. -+.+++.++|.++++|
T Consensus 259 ~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~-~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 259 ALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPP-GDPAALAEAIRRLLED 332 (357)
T ss_pred HHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCC-CCHHHHHHHHHHHHHC
Confidence 4788899833333 2344 4799999999999996554443 3333 24 67776665 5899999999999998
No 73
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.91 E-value=6.6e-07 Score=86.41 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=61.6
Q ss_pred CCCccccccCh-hhhhccCCCccccc--ccCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHH
Q 040486 333 GRGHMVKWAPQ-QEVLAHPATGGFWT--HCGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGE 408 (460)
Q Consensus 333 ~~~~v~~~vp~-~~~l~~~~~~~~I~--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 408 (460)
+++.+.++.+. ..++..+++-++-+ +-|. +++.||+++|+|+|+.. -......+.+. +.|..++. -+.+.
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i~~~-~~g~~~~~-~~~~~ 319 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETVRPG-ETGLLVPP-GDAEA 319 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHHhCC-CceEEeCC-CCHHH
Confidence 45677888554 46888999833323 2233 59999999999999854 33455666663 67877765 68899
Q ss_pred HHHHHHHHhc-cch-HHHHHHHHHHHH
Q 040486 409 VERTIRRVMT-EAE-GQEIRVRIMILK 433 (460)
Q Consensus 409 l~~~i~~ll~-~~~-~~~~~~~a~~~~ 433 (460)
+.++|..++. |.+ ...+++++++..
T Consensus 320 l~~~i~~~~~~~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 320 LAQALDQILSLLPEGRAKMFAKARMCV 346 (355)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999965554 522 333444444433
No 74
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.91 E-value=1.8e-06 Score=83.80 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=62.4
Q ss_pred CCCCccccccChh---hhhccCCCcccccc----------cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhccee
Q 040486 332 DGRGHMVKWAPQQ---EVLAHPATGGFWTH----------CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGL 398 (460)
Q Consensus 332 ~~~~~v~~~vp~~---~~l~~~~~~~~I~H----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~ 398 (460)
.+++.+.+++|+. .++..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 4566788999875 46888998 6642 2357999999999999986654 366777774 8888
Q ss_pred eeCCccCHHHHHHHHHHHhcc
Q 040486 399 HLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 399 ~~~~~~~~~~l~~~i~~ll~~ 419 (460)
.++. -+.+++.++|.++++|
T Consensus 317 ~~~~-~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVPE-GDVAALAAALGRLLAD 336 (367)
T ss_pred EECC-CCHHHHHHHHHHHHcC
Confidence 7765 5789999999999998
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.89 E-value=4.3e-07 Score=86.89 Aligned_cols=154 Identities=12% Similarity=0.041 Sum_probs=91.3
Q ss_pred EEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhh--cCCCCccccccChh---hhhccC
Q 040486 276 IYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLET--LDGRGHMVKWAPQQ---EVLAHP 350 (460)
Q Consensus 276 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~v~~~vp~~---~~l~~~ 350 (460)
+.+..|... ..+....+++++++.+.++++.-.+... ..+-....+. ..+++.+.+++++. .+++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP------DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH------HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 334556664 3344456778888888776654333210 0011111112 24677888999985 468888
Q ss_pred CCccccc--ccCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchHHHHHH
Q 040486 351 ATGGFWT--HCGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEGQEIRV 427 (460)
Q Consensus 351 ~~~~~I~--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 427 (460)
++-++-+ +-|. .++.||+++|+|+|+... ......+++. ..|...+. .+++.+++.+++.. . ++
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~~~---~~~l~~~l~~l~~~---~--~~ 311 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLVDS---VEELAAAVARADRL---D--RA 311 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEeCC---HHHHHHHHHHHhcc---H--HH
Confidence 8822222 2343 589999999999998544 3445566652 46766654 88999999988765 2 22
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 428 RIMILKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 428 ~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
++++. +. +.-+.++.+++.++.+
T Consensus 312 ~~~~~---~~----~~~s~~~~~~~~~~~y 334 (335)
T cd03802 312 ACRRR---AE----RRFSAARMVDDYLALY 334 (335)
T ss_pred HHHHH---HH----HhCCHHHHHHHHHHHh
Confidence 33222 22 3455666777666654
No 76
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.85 E-value=6.5e-07 Score=86.75 Aligned_cols=135 Identities=15% Similarity=0.178 Sum_probs=80.7
Q ss_pred eEEEEEccccccCCHHHHHHHHHHHHcCCCCE-EEEEcCCccCCCccCCCCchhHHh-hcCCCCccccccCh--h---hh
Q 040486 274 SVIYVSFGSIAAINETEFLEVAWGLANSKVPF-LWVVRPGLVRGAEWIEPLPQGFLE-TLDGRGHMVKWAPQ--Q---EV 346 (460)
Q Consensus 274 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~v~~~vp~--~---~~ 346 (460)
+.+++..|.........+..+++++......+ ++.++.+.. ...+-+...+ ..++++.+.+|+++ . +.
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~-----~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD-----FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc-----HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 34556677765323445566777777653232 233333220 0111111111 22356788888754 2 34
Q ss_pred hccCCCcccccc----cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccc
Q 040486 347 LAHPATGGFWTH----CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEA 420 (460)
Q Consensus 347 l~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~ 420 (460)
++.+++ +|.. |--.++.||+++|+|+|+.-. .......+++. ..|..++. -+.+++.++|.++++|.
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv~~-~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELYTP-GNIDEFVGKLNKVISGE 325 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEECC-CCHHHHHHHHHHHHhCc
Confidence 556777 6643 225799999999999998641 22233456663 67877765 68999999999999984
No 77
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.83 E-value=4.5e-06 Score=80.44 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=59.6
Q ss_pred CCCCccccccChh---hhhccCCCcccccc----------cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhccee
Q 040486 332 DGRGHMVKWAPQQ---EVLAHPATGGFWTH----------CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGL 398 (460)
Q Consensus 332 ~~~~~v~~~vp~~---~~l~~~~~~~~I~H----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~ 398 (460)
++++.+.+++|+. .+++.+++ +|.- |.-+++.||+++|+|+|+.+.. .....+++. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceE
Confidence 3566888999864 47788998 5552 3347999999999999986543 233455552 5787
Q ss_pred eeCCccCHHHHHHHHHHHhcc
Q 040486 399 HLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 399 ~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+. -+.+++.++|.++++|
T Consensus 308 ~~~~-~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVPP-GDPEALADAIERLLDD 327 (355)
T ss_pred EeCC-CCHHHHHHHHHHHHhC
Confidence 7765 4889999999999998
No 78
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.82 E-value=2.1e-07 Score=88.23 Aligned_cols=159 Identities=12% Similarity=0.029 Sum_probs=97.0
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHcCCCC-EEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccCh-hhhhccC
Q 040486 273 KSVIYVSFGSIAAINETEFLEVAWGLANSKVP-FLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQ-QEVLAHP 350 (460)
Q Consensus 273 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~-~~~l~~~ 350 (460)
+++|.+--||....-...+..++++...+..+ ..+.+.... . . +.+.+...+. .....+.+ .+++..+
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~--~------~-~~i~~~~~~~-~~~~~~~~~~~~m~~a 236 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF--K------G-KDLKEIYGDI-SEFEISYDTHKALLEA 236 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC--c------H-HHHHHHHhcC-CCcEEeccHHHHHHhh
Confidence 36898999997663334455455666554321 222222211 0 1 2222211110 11122223 4789999
Q ss_pred CCcccccccCchhHHHHHhhCCceecccc--ccchhhhHHHHh---hhhcceeee-------------CC-ccCHHHHHH
Q 040486 351 ATGGFWTHCGWNSTLESICEGVPMICQPC--FGDQMVNARYVS---DVWKVGLHL-------------ER-KLERGEVER 411 (460)
Q Consensus 351 ~~~~~I~HgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~~v~---~~~G~g~~~-------------~~-~~~~~~l~~ 411 (460)
|+ +|+-+|..|+ |++..|+|+|+ +. ..-|..||+++. . .|+.-.+ .. +.|++.|.+
T Consensus 237 Dl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~ 311 (347)
T PRK14089 237 EF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLK 311 (347)
T ss_pred hH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHH
Confidence 99 9999999999 99999999998 43 457899999988 5 3655333 22 688899999
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 040486 412 TIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLIS 455 (460)
Q Consensus 412 ~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 455 (460)
.+.+ ... +.+++..+++.+.+. . +++.++++.+.+
T Consensus 312 ~i~~-~~~---~~~~~~~~~l~~~l~----~-~a~~~~A~~i~~ 346 (347)
T PRK14089 312 AYKE-MDR---EKFFKKSKELREYLK----H-GSAKNVAKILKE 346 (347)
T ss_pred HHHH-HHH---HHHHHHHHHHHHHhc----C-CHHHHHHHHHhc
Confidence 8877 222 456666666666553 3 666666665543
No 79
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.80 E-value=3e-06 Score=82.99 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=94.5
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHcC--CCCEEEEEcCCccCCCccCCCCchhHHhh---cC---CCCcc-ccccChh-
Q 040486 275 VIYVSFGSIAAINETEFLEVAWGLANS--KVPFLWVVRPGLVRGAEWIEPLPQGFLET---LD---GRGHM-VKWAPQQ- 344 (460)
Q Consensus 275 ~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~---~~---~~~~v-~~~vp~~- 344 (460)
.+++..|.... .+....++++++.+ +.++++..++... ..+-+.+.+. .. +++.+ .+++++.
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDT------PEVAEEVRQAVALLDRNRTGIIWINKMLPKEE 273 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCc------HHHHHHHHHHHHHhccccCceEEecCCCCHHH
Confidence 34555676553 34456677777765 3555554433221 0011122111 11 12333 3677764
Q ss_pred --hhhccCCCcccccc----cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC-ccC----HHHHHHHH
Q 040486 345 --EVLAHPATGGFWTH----CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLE----RGEVERTI 413 (460)
Q Consensus 345 --~~l~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~----~~~l~~~i 413 (460)
+++..+|+ +|.= |...++.||+++|+|+|+... ......+++. +.|..++. +.+ .+.+.++|
T Consensus 274 ~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i 346 (388)
T TIGR02149 274 LVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAI 346 (388)
T ss_pred HHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHH
Confidence 47889998 6642 223577999999999998543 4466677774 77888766 221 28999999
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 414 RRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 414 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
.++++| +..++ ++++..++...+.-+-+..++++++.+++
T Consensus 347 ~~l~~~---~~~~~---~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 347 NILLAD---PELAK---KMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHhC---HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999998 43332 22222222222345566777777777765
No 80
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.78 E-value=3.6e-05 Score=79.93 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=53.0
Q ss_pred CCCcccccc-Ch---hhhhcc----CCCcccccc---cC-chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeee
Q 040486 333 GRGHMVKWA-PQ---QEVLAH----PATGGFWTH---CG-WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHL 400 (460)
Q Consensus 333 ~~~~v~~~v-p~---~~~l~~----~~~~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~ 400 (460)
+++.+.++. +. .+++++ +++ ||.= =| --|+.||+++|+|+|+. +.......|++. ..|..+
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT----~~GG~~EiV~dg-~tGfLV 691 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFAT----RFGGPLEIIQDG-VSGFHI 691 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCC-CcEEEe
Confidence 455666654 32 245543 245 6643 23 35999999999999984 444566778874 779888
Q ss_pred CCccCHHHHHHHHHHHh
Q 040486 401 ERKLERGEVERTIRRVM 417 (460)
Q Consensus 401 ~~~~~~~~l~~~i~~ll 417 (460)
+. -+.+.++++|.+++
T Consensus 692 dp-~D~eaLA~aL~~ll 707 (784)
T TIGR02470 692 DP-YHGEEAAEKIVDFF 707 (784)
T ss_pred CC-CCHHHHHHHHHHHH
Confidence 87 57888999998876
No 81
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.77 E-value=1.1e-05 Score=77.51 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=67.6
Q ss_pred CCccccccCh-hhhhccCCCcccccccC----chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHH
Q 040486 334 RGHMVKWAPQ-QEVLAHPATGGFWTHCG----WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGE 408 (460)
Q Consensus 334 ~~~v~~~vp~-~~~l~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 408 (460)
++.+.+...+ .++++.+++ +|..+. -+++.||+++|+|+|+.. ...+...+.+ .|..++. -+.++
T Consensus 252 ~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~-~~~~~ 321 (365)
T cd03807 252 KVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPP-GDPEA 321 (365)
T ss_pred eEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCC-CCHHH
Confidence 4455555444 478899998 776544 379999999999999844 3444555554 3334443 46899
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 409 VERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 409 l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
+.++|.++++| +..+ +++++..++...+.-+-.+.++++.+.+
T Consensus 322 l~~~i~~l~~~---~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 322 LAEAIEALLAD---PALR---QALGEAARERIEENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHhC---hHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999998 3222 2223333322224455666666666543
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.77 E-value=1.5e-05 Score=77.08 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=85.9
Q ss_pred EEEccccccCCHHHHHHHHHHHHcCC--CCEEEEEcCCccCCCccCCCCchhHH--hhcCCCCccccccChhh---hhcc
Q 040486 277 YVSFGSIAAINETEFLEVAWGLANSK--VPFLWVVRPGLVRGAEWIEPLPQGFL--ETLDGRGHMVKWAPQQE---VLAH 349 (460)
Q Consensus 277 ~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~lp~~~~--~~~~~~~~v~~~vp~~~---~l~~ 349 (460)
++.+|+... .+....++++++++. .++ +.++..... ..+-..+. ....+++.+.+++|+.+ .+..
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l-~ivG~~~~~-----~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKL-VIVGNADHN-----TPYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceE-EEEcCCCCc-----chHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 345677653 344555677777664 443 334432111 11111222 12235678889999864 5666
Q ss_pred CCCcccccccCc-----hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchHHH
Q 040486 350 PATGGFWTHCGW-----NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEGQE 424 (460)
Q Consensus 350 ~~~~~~I~HgG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~ 424 (460)
+++ ++.++-. +++.||+++|+|+|+....+ +...+++. |.. .+. . +.+.++|.++++| +.
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~~--~~~--~-~~l~~~i~~l~~~---~~ 332 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AIY--FKV--G-DDLASLLEELEAD---PE 332 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-eeE--ecC--c-hHHHHHHHHHHhC---HH
Confidence 777 5554432 58999999999999865432 22223332 333 222 1 1299999999998 43
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 425 IRVRIMILKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
.++ ++++..++...+.-+-+..++++++.+
T Consensus 333 ~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 333 EVS---AMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HHH---HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 333 333333333334456666777777654
No 83
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.76 E-value=1.9e-05 Score=77.76 Aligned_cols=114 Identities=12% Similarity=0.126 Sum_probs=80.3
Q ss_pred CCCccccccChhh---hhccCCCcccccc---------cCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceee
Q 040486 333 GRGHMVKWAPQQE---VLAHPATGGFWTH---------CGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLH 399 (460)
Q Consensus 333 ~~~~v~~~vp~~~---~l~~~~~~~~I~H---------gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~ 399 (460)
+++.+.+|+|+.+ ++..+|+ +|.- -|. .++.||+++|+|+|+.... .....+++. ..|..
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~l 351 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGWL 351 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceEE
Confidence 5667889999864 7888998 6642 344 5789999999999986443 345567764 67877
Q ss_pred eCCccCHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 040486 400 LERKLERGEVERTIRRVMT-EAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILSF 460 (460)
Q Consensus 400 ~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
++. -+.+++.++|.++++ | +..+ ++|++..++...+.-+.+..++++.+.++++
T Consensus 352 v~~-~d~~~la~ai~~l~~~d---~~~~---~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 352 VPE-NDAQALAQRLAAFSQLD---TDEL---APVVKRAREKVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred eCC-CCHHHHHHHHHHHHhCC---HHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 765 579999999999999 8 4332 2333333333335566788888888887764
No 84
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.75 E-value=7.3e-06 Score=79.16 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=71.5
Q ss_pred CCCccccccCh-hhhhccCCCcccccccC----chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHH
Q 040486 333 GRGHMVKWAPQ-QEVLAHPATGGFWTHCG----WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERG 407 (460)
Q Consensus 333 ~~~~v~~~vp~-~~~l~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 407 (460)
+++.+.++..+ .+++..+++ +|.-.. .+++.||+++|+|+|+ .|...+...+++ .|... .. -+.+
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~----~~~~~~~e~i~~-~g~~~--~~-~~~~ 314 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVA----TDAGGVREVVGD-SGLIV--PI-SDPE 314 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEE----ecCCChhhEecC-CceEe--CC-CCHH
Confidence 45677777665 478999998 655432 5789999999999997 455556666666 35543 33 5788
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 408 EVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
++.+++.+++++. +.+++...+-++.+. +.-+-+..++++.+.++
T Consensus 315 ~~~~~i~~ll~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 315 ALANKIDEILKMS--GEERDIIGARRERIV----KKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHhh
Confidence 9999999998431 445444433333333 44555666666666553
No 85
>PLN02275 transferase, transferring glycosyl groups
Probab=98.74 E-value=7.8e-06 Score=79.56 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=53.6
Q ss_pred CCccc-cccChhh---hhccCCCccccc-c-----cC-chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC
Q 040486 334 RGHMV-KWAPQQE---VLAHPATGGFWT-H-----CG-WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER 402 (460)
Q Consensus 334 ~~~v~-~~vp~~~---~l~~~~~~~~I~-H-----gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 402 (460)
|+.+. .|+|+.+ +|+.+|+ +|. + -| -+++.||+++|+|+|+... ..+...+++. +.|..++
T Consensus 287 ~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~- 358 (371)
T PLN02275 287 HVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS- 358 (371)
T ss_pred ceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC-
Confidence 44554 4788755 5899999 763 1 12 2579999999999999643 3366777774 7898775
Q ss_pred ccCHHHHHHHHHHHh
Q 040486 403 KLERGEVERTIRRVM 417 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll 417 (460)
+.++|.++|.+++
T Consensus 359 --~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --SSSELADQLLELL 371 (371)
T ss_pred --CHHHHHHHHHHhC
Confidence 4788999998875
No 86
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.70 E-value=6.3e-06 Score=80.97 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=52.5
Q ss_pred cccccChhhhhccCCCcccccccC----chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHH
Q 040486 337 MVKWAPQQEVLAHPATGGFWTHCG----WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERT 412 (460)
Q Consensus 337 v~~~vp~~~~l~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~ 412 (460)
+.++....++++..|+ ||.-+- ..++.||+++|+|+|+.-..+ + ..+.+. +-|... -+.+++.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~---~~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY---DDGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec---CCHHHHHHH
Confidence 3466666779999998 887643 468999999999999955432 2 445553 556544 267899999
Q ss_pred HHHHhcc
Q 040486 413 IRRVMTE 419 (460)
Q Consensus 413 i~~ll~~ 419 (460)
+.++|++
T Consensus 357 i~~~l~~ 363 (462)
T PLN02846 357 TLKALAE 363 (462)
T ss_pred HHHHHcc
Confidence 9999986
No 87
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.69 E-value=3.6e-06 Score=80.38 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=56.7
Q ss_pred CCCccccccCh-hhhhccCCCcccccc----cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHH
Q 040486 333 GRGHMVKWAPQ-QEVLAHPATGGFWTH----CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERG 407 (460)
Q Consensus 333 ~~~~v~~~vp~-~~~l~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 407 (460)
+++.+.++++. .+++..+++ +|.- |.-+++.||+++|+|+|+... ......+++. +.|...+. -+.+
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-~~~~ 317 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILEDG-ENGLLVPV-GDEA 317 (353)
T ss_pred ccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcCC-CceEEECC-CCHH
Confidence 45567788776 478999998 6632 335689999999999998443 3566778884 88888776 4666
Q ss_pred HH---HHHHHHHhcc
Q 040486 408 EV---ERTIRRVMTE 419 (460)
Q Consensus 408 ~l---~~~i~~ll~~ 419 (460)
.+ .+.+.+++.+
T Consensus 318 ~~~~~~~~i~~~~~~ 332 (353)
T cd03811 318 ALAAAALALLDLLLD 332 (353)
T ss_pred HHHHHHHHHHhccCC
Confidence 66 5666666666
No 88
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.66 E-value=1.1e-05 Score=78.63 Aligned_cols=112 Identities=13% Similarity=0.023 Sum_probs=74.3
Q ss_pred CCccccccCh-hhhhccCCCccccc--c--cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHH
Q 040486 334 RGHMVKWAPQ-QEVLAHPATGGFWT--H--CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGE 408 (460)
Q Consensus 334 ~~~v~~~vp~-~~~l~~~~~~~~I~--H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 408 (460)
++.+.++..+ .+++..+|+ +|. + |--.++.||+++|+|+|+... ..+...+++. ..|..++. -+.++
T Consensus 256 ~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~-~d~~~ 327 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP-GDAVA 327 (374)
T ss_pred eEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC-CCHHH
Confidence 3445555444 478999999 663 3 335699999999999999554 3456667663 67877765 57899
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 409 VERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 409 l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+.++|.++++| +..++ ++++..++...+.-+.+..++++++.+++
T Consensus 328 la~~i~~l~~~---~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 328 LARALQPYVSD---PAARR---AHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHhC---HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999998 43322 22222222222455667777777777654
No 89
>PLN00142 sucrose synthase
Probab=98.66 E-value=8e-06 Score=84.75 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=48.6
Q ss_pred cChhhhhc----cCCCcccccc---cCch-hHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHH
Q 040486 341 APQQEVLA----HPATGGFWTH---CGWN-STLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERT 412 (460)
Q Consensus 341 vp~~~~l~----~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~ 412 (460)
++..++.+ .+++ ||.- -|.| ++.||+++|+|+|+.. .......|++. ..|..++. -+.++++++
T Consensus 654 ~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATd----vGG~~EIV~dG-~tG~LV~P-~D~eaLA~a 725 (815)
T PLN00142 654 VRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATC----QGGPAEIIVDG-VSGFHIDP-YHGDEAANK 725 (815)
T ss_pred ccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEEEeCC-CCHHHHHHH
Confidence 33345554 3455 6653 4554 8999999999999854 44466677774 67988876 577788888
Q ss_pred HHHH----hcc
Q 040486 413 IRRV----MTE 419 (460)
Q Consensus 413 i~~l----l~~ 419 (460)
|.++ ++|
T Consensus 726 I~~lLekLl~D 736 (815)
T PLN00142 726 IADFFEKCKED 736 (815)
T ss_pred HHHHHHHhcCC
Confidence 7654 467
No 90
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.59 E-value=1.1e-05 Score=77.88 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCeEEEEEccccc--c-CCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhc--CCCCccccccCh---
Q 040486 272 PKSVIYVSFGSIA--A-INETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETL--DGRGHMVKWAPQ--- 343 (460)
Q Consensus 272 ~~~~v~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~v~~~vp~--- 343 (460)
+++.++|++=... . ...+.+..+++++...+.++++...... +.. ..+-+.+.+.. .+++.+.+.++.
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~~---~~i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AGS---RIINEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CCc---hHHHHHHHHHhcCCCCEEEECCCChHHH
Confidence 3467888885543 2 4467788999999888766655543221 110 00111122211 245677766554
Q ss_pred hhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceee-eCCccCHHHHHHHHHHHhc
Q 040486 344 QEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLH-LERKLERGEVERTIRRVMT 418 (460)
Q Consensus 344 ~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~-~~~~~~~~~l~~~i~~ll~ 418 (460)
..+++++++ +|+-++.|- .||.+.|+|+|.+- +.+ .-++. |..+. + ..+.++|.+++.++++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~~~--g~nvl~v--g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGRLR--ADSVIDV--DPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhhhh--cCeEEEe--CCCHHHHHHHHHHHhC
Confidence 468899999 998886666 99999999999763 211 11121 33222 3 3588999999999543
No 91
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.57 E-value=2.5e-07 Score=73.46 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=81.6
Q ss_pred CeEEEEEccccccC---CHHHHHHHHHHHHcCCC-CEEEEEcCCccCCCccCCCCchhHHhhcCCCCc-c--ccccCh-h
Q 040486 273 KSVIYVSFGSIAAI---NETEFLEVAWGLANSKV-PFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGH-M--VKWAPQ-Q 344 (460)
Q Consensus 273 ~~~v~vs~Gs~~~~---~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-v--~~~vp~-~ 344 (460)
...+|||-||.... +.-...+..+.+.+.|+ +.|++.+.+.. . .++.+..-.+..++ + .+|-|- .
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-----~--~~d~~~~~~k~~gl~id~y~f~psl~ 75 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-----F--FGDPIDLIRKNGGLTIDGYDFSPSLT 75 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-----C--CCCHHHhhcccCCeEEEEEecCccHH
Confidence 34799999998851 11122446677788885 56777776631 1 22222111122122 2 366776 5
Q ss_pred hhhccCCCcccccccCchhHHHHHhhCCceecccc----ccchhhhHHHHhhhhcceeeeCC
Q 040486 345 EVLAHPATGGFWTHCGWNSTLESICEGVPMICQPC----FGDQMVNARYVSDVWKVGLHLER 402 (460)
Q Consensus 345 ~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~g~~~~~ 402 (460)
+..+.+++ +|+|+|+||++|.|..|+|.|+++- -..|-.-|..+++ .|.=..-..
T Consensus 76 e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~p 134 (170)
T KOG3349|consen 76 EDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCTP 134 (170)
T ss_pred HHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEeec
Confidence 77778999 9999999999999999999999985 4679999999998 476555544
No 92
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.55 E-value=2.5e-05 Score=76.82 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=72.0
Q ss_pred CCCccccccChh-hhhccCCCcccc--cc--cCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCH
Q 040486 333 GRGHMVKWAPQQ-EVLAHPATGGFW--TH--CGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLER 406 (460)
Q Consensus 333 ~~~~v~~~vp~~-~~l~~~~~~~~I--~H--gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 406 (460)
.++.+.+++++. .+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .+.. |.|..+. -+.
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~--~~~ 349 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA--ADP 349 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC--CCH
Confidence 456778999864 68899999 66 32 354 36999999999999987643221 1232 6676664 488
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 407 GEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 407 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+++.++|.++++| +..+++ |++..++...+.-+-.+.++++.+.+.
T Consensus 350 ~~la~ai~~ll~~---~~~~~~---~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 350 ADFAAAILALLAN---PAEREE---LGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHcC---HHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 9999999999998 443332 222222222244556667777666654
No 93
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.52 E-value=3.5e-05 Score=74.34 Aligned_cols=91 Identities=15% Similarity=0.206 Sum_probs=60.9
Q ss_pred cCCCCccccccChh---hhhccCCCcccccc----cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCc
Q 040486 331 LDGRGHMVKWAPQQ---EVLAHPATGGFWTH----CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERK 403 (460)
Q Consensus 331 ~~~~~~v~~~vp~~---~~l~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 403 (460)
..+++.+.+++|+. +++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeCC-
Confidence 34566888999875 47888888 5533 3346899999999999985442 22222333 2333443
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 040486 404 LERGEVERTIRRVMTEAEGQEIRVRIMILKE 434 (460)
Q Consensus 404 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~ 434 (460)
-+.+++.++|.++++| +..+.+..+-+.
T Consensus 321 ~~~~~~~~~i~~l~~~---~~~~~~~~~~~~ 348 (365)
T cd03809 321 LDPEALAAAIERLLED---PALREELRERGL 348 (365)
T ss_pred CCHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 4789999999999999 666555544443
No 94
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=3.4e-05 Score=72.97 Aligned_cols=319 Identities=14% Similarity=0.132 Sum_probs=174.0
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCCCCCCCCC-C-CCeeEEecCCCCCCcccccccHHHHHHHHHHh
Q 040486 18 ILFPLPLQGHINPMLQLANILYSK--GFSITIIH-TNFNSPNPSN-Y-PHFTFCSIEDSLSETEASTADLVALLSLLNVQ 92 (460)
Q Consensus 18 l~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~-~~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
+-+=.-|.|-++..++|.++|.++ ++.+++-+ |+...+.... + ..+....+|-+++ ..
T Consensus 52 vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~----------~~------- 114 (419)
T COG1519 52 VWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP----------IA------- 114 (419)
T ss_pred EEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch----------HH-------
Confidence 333345889999999999999999 77777765 5554444321 1 1244444442222 11
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecC--CchhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCC
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDA--TWYFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDS 170 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (460)
++..+.. .+||++|.-. +++....-++..|+|.+.+..- +..+++
T Consensus 115 ----v~rFl~~----------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------LS~rS~------ 161 (419)
T COG1519 115 ----VRRFLRK----------WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------LSDRSF------ 161 (419)
T ss_pred ----HHHHHHh----------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------echhhh------
Confidence 1222333 4699776544 3355566788999999996432 111111
Q ss_pred CCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCC-CccccCCCCcCC
Q 040486 171 QSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPI-PMFPIGPFHKFF 249 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~-p~~~vG~l~~~~ 249 (460)
.....+..++.. .+++.+.++..+...- .. +. .++. ++...|-+-.+.
T Consensus 162 ----------------------~~y~k~~~~~~~---~~~~i~li~aQse~D~--~R---f~-~LGa~~v~v~GNlKfd~ 210 (419)
T COG1519 162 ----------------------ARYAKLKFLARL---LFKNIDLILAQSEEDA--QR---FR-SLGAKPVVVTGNLKFDI 210 (419)
T ss_pred ----------------------HHHHHHHHHHHH---HHHhcceeeecCHHHH--HH---HH-hcCCcceEEecceeecC
Confidence 011111222222 2345666666554322 21 12 2333 377777776554
Q ss_pred CCCCccccc-CccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCC--CCEEEEEcCCccCCCccCCCCchh
Q 040486 250 SASSSSLLA-HDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSK--VPFLWVVRPGLVRGAEWIEPLPQG 326 (460)
Q Consensus 250 ~~~~~~~~~-~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~lp~~ 326 (460)
... +..+ .-..+...++. .++ +.|..+| -...++.+-....++.+.. ...||+=...+ .. +.
T Consensus 211 ~~~--~~~~~~~~~~r~~l~~--~r~-v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRHpE--------Rf-~~ 275 (419)
T COG1519 211 EPP--PQLAAELAALRRQLGG--HRP-VWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRHPE--------RF-KA 275 (419)
T ss_pred CCC--hhhHHHHHHHHHhcCC--CCc-eEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCChh--------hH-HH
Confidence 320 0001 01123333432 133 4444444 3233444555666666543 45666543221 01 11
Q ss_pred HHhhcCC------------------CCccccccCh-hhhhccCCC----cccccccCchhHHHHHhhCCceeccccccch
Q 040486 327 FLETLDG------------------RGHMVKWAPQ-QEVLAHPAT----GGFWTHCGWNSTLESICEGVPMICQPCFGDQ 383 (460)
Q Consensus 327 ~~~~~~~------------------~~~v~~~vp~-~~~l~~~~~----~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 383 (460)
+++..+. ++.+.|-+-- ..++.-+++ |-++-+||+| ..|+++.|+|+|.=|...-|
T Consensus 276 v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf 354 (419)
T COG1519 276 VENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNF 354 (419)
T ss_pred HHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccH
Confidence 2222221 2222332222 234444544 3366799998 67999999999999999999
Q ss_pred hhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHH
Q 040486 384 MVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAE-GQEIRVRIMILKEKLN 437 (460)
Q Consensus 384 ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~ 437 (460)
.+-++++.+. |+|+.++. .+.|.+++..+++|++ +..|.+++.++-...+
T Consensus 355 ~ei~~~l~~~-ga~~~v~~---~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 355 SDIAERLLQA-GAGLQVED---ADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred HHHHHHHHhc-CCeEEECC---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999996 99999965 7889999988888733 4444444444444443
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.50 E-value=0.00017 Score=74.90 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=74.0
Q ss_pred CCCccccccCh-hhhhccCCCccccc---ccCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCH
Q 040486 333 GRGHMVKWAPQ-QEVLAHPATGGFWT---HCGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLER 406 (460)
Q Consensus 333 ~~~~v~~~vp~-~~~l~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~ 406 (460)
+++.+.+|.++ ..+++.+++ +|. +.|. +++.||+++|+|+|+... ......+++. ..|..++. +.+.
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~~d~~~ 646 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPADTVTA 646 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCCCCCCh
Confidence 56778888876 368999999 664 4554 799999999999999654 3455667774 67888876 5566
Q ss_pred HHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 407 GEVERTIRRVMTEAE-GQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 407 ~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+++.+++.+++.+.. .+.+++++++..+ +.-+..+.++++++.++
T Consensus 647 ~~La~aL~~ll~~l~~~~~l~~~ar~~a~-------~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 647 PDVAEALARIHDMCAADPGIARKAADWAS-------ARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHHHHhChhccHHHHHHHHHHHH-------HhCCHHHHHHHHHHHhC
Confidence 666666666554210 1566665544432 23446666676666553
No 96
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.49 E-value=5.8e-05 Score=73.55 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=71.3
Q ss_pred CCCcccccc--Chh---hhhccCCCccccccc---C-chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCc
Q 040486 333 GRGHMVKWA--PQQ---EVLAHPATGGFWTHC---G-WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERK 403 (460)
Q Consensus 333 ~~~~v~~~v--p~~---~~l~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 403 (460)
+++.+.++. ++. ++++.+++ |+.-+ | -.++.||+++|+|+|+.... .....+.+. ..|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--
Confidence 345666765 432 57888998 77543 2 34999999999999986543 334556663 6676554
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 404 LERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 404 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+.+.+..+|.++++| ++.++...+-+.+. ..+.-+-+..++++++.+++
T Consensus 323 -~~~~~a~~i~~ll~~---~~~~~~~~~~a~~~---~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 -TVEEAAVRILYLLRD---PELRRKMGANAREH---VRENFLITRHLKDYLYLISK 371 (372)
T ss_pred -CcHHHHHHHHHHHcC---HHHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHHh
Confidence 456788899999998 54443332222221 12445567778888777765
No 97
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.46 E-value=5e-05 Score=73.33 Aligned_cols=83 Identities=13% Similarity=0.035 Sum_probs=57.9
Q ss_pred CCCccccccCh-hhhhccCCCcccccc----cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHH
Q 040486 333 GRGHMVKWAPQ-QEVLAHPATGGFWTH----CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERG 407 (460)
Q Consensus 333 ~~~~v~~~vp~-~~~l~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 407 (460)
+++.+.++..+ .+++..+++ +|+- |--.++.||+++|+|+|+....+ ....+++ +.|..... -+.+
T Consensus 249 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~-~~~~ 319 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD-ESPE 319 (358)
T ss_pred CcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-CCHH
Confidence 45567777555 478899998 6643 34579999999999999854433 3444554 44444433 3579
Q ss_pred HHHHHHHHHhccchHHHHHH
Q 040486 408 EVERTIRRVMTEAEGQEIRV 427 (460)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~ 427 (460)
+++++|.++++| +..++
T Consensus 320 ~~a~~i~~l~~~---~~~~~ 336 (358)
T cd03812 320 IWAEEILKLKSE---DRRER 336 (358)
T ss_pred HHHHHHHHHHhC---cchhh
Confidence 999999999999 55444
No 98
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.45 E-value=2.4e-05 Score=75.58 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=85.1
Q ss_pred EEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChh---hhhccCCCc
Q 040486 277 YVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQ---EVLAHPATG 353 (460)
Q Consensus 277 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~---~~l~~~~~~ 353 (460)
++..|+... .+....+++++++++.++++.-.+. ..+.+.+...+++.+.+++|+. .+++.+++-
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~----------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~ 265 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP----------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAF 265 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh----------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEE
Confidence 445666553 3445667888888887765543322 1133333455777899999985 478899982
Q ss_pred ccccccCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 354 GFWTHCGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 354 ~~I~HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
++-+.-|. .++.||+++|+|+|+.... .....+++. +.|..++. -+.++++++|.++++|
T Consensus 266 v~ps~e~~g~~~~Eama~G~Pvi~~~~~----~~~e~i~~~-~~G~~~~~-~~~~~la~~i~~l~~~ 326 (351)
T cd03804 266 LFPAEEDFGIVPVEAMASGTPVIAYGKG----GALETVIDG-VTGILFEE-QTVESLAAAVERFEKN 326 (351)
T ss_pred EECCcCCCCchHHHHHHcCCCEEEeCCC----CCcceeeCC-CCEEEeCC-CCHHHHHHHHHHHHhC
Confidence 22233444 3678999999999996543 344556664 78888776 5788899999999998
No 99
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.42 E-value=4.9e-05 Score=75.96 Aligned_cols=345 Identities=12% Similarity=0.077 Sum_probs=170.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhc
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQC 93 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
..||.+++.-..||+.- ..|.++|+++.-++.|.+-. .....+ .|++-. .+.+......+.|.+..+ ...
T Consensus 226 ~~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvG-G~~M~a--aG~e~l-----~d~~eLsVmG~~EVL~~l-~~l 295 (608)
T PRK01021 226 NTSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVG-GPQMRA--EGFHPL-----FNMEEFQVSGFWEVLLAL-FKL 295 (608)
T ss_pred CCeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEc-cHHHHh--CcCccc-----CChHHhhhhhHHHHHHHH-HHH
Confidence 35788777767787765 45677888776666665432 111111 233311 111111222333433333 222
Q ss_pred chhHHHHHHHHhcccccccCCCeeEEEe-cCC--chhHHHHHHHcCC--ceEEEecccHHHHHHHHhcchhhccCCCCCC
Q 040486 94 VVPFRNCLAKLLSNVEEEEKEPIACLIT-DAT--WYFTQAVAESLKL--SRIVLRTNSVSSFLVFAAFPVLSQKGYFPIR 168 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~kpD~VI~-D~~--~~~~~~~A~~lgi--P~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (460)
...++++.+.+.+ ++||++|. |.- .....-.+++.|+ |++.+.+...+.+
T Consensus 296 ~~~~~~l~~~i~~-------~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWAW------------------ 350 (608)
T PRK01021 296 WYRYRKLYKTILK-------TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWAW------------------ 350 (608)
T ss_pred HHHHHHHHHHHHh-------cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceee------------------
Confidence 3334455555554 68999876 652 3434556777896 9888654321110
Q ss_pred CCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCccccC-CCCc
Q 040486 169 DSQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIG-PFHK 247 (460)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG-~l~~ 247 (460)
+- .+...+.+... .++ .-+| ||.+. -+..+.++.+|| |+..
T Consensus 351 --------------R~--------~Rikki~k~vD----------~ll-~IfP-FE~~~----y~~~gv~v~yVGHPL~d 392 (608)
T PRK01021 351 --------------RP--------KRKTILEKYLD----------LLL-LILP-FEQNL----FKDSPLRTVYLGHPLVE 392 (608)
T ss_pred --------------Cc--------chHHHHHHHhh----------hhe-ecCc-cCHHH----HHhcCCCeEEECCcHHh
Confidence 00 12222222222 212 1222 44442 223477899999 6554
Q ss_pred CCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHH--cC--CCCEEEEEcCCccCCCccCCCC
Q 040486 248 FFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLA--NS--KVPFLWVVRPGLVRGAEWIEPL 323 (460)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~l 323 (460)
..+. .+...+..+-+.-.+++++|-+--||-...=...+..++++.+ .. ..++++...... .
T Consensus 393 ~i~~-----~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~---------~ 458 (608)
T PRK01021 393 TISS-----FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK---------Y 458 (608)
T ss_pred hccc-----CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---------h
Confidence 4221 1122222333333346788999999966533344555666666 33 345555433211 1
Q ss_pred chhHHhhcCC-CCcccccc-C--hhhhhccCCCcccccccCchhHHHHHhhCCceeccc-cccchhhhHHHHhh------
Q 040486 324 PQGFLETLDG-RGHMVKWA-P--QQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQP-CFGDQMVNARYVSD------ 392 (460)
Q Consensus 324 p~~~~~~~~~-~~~v~~~v-p--~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~------ 392 (460)
.+.+++...+ ...-..-+ . ..++++.||+ .+.-+|- .+.|+...|+|||++= ...=-...|+++.+
T Consensus 459 ~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yI 535 (608)
T PRK01021 459 DHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAY 535 (608)
T ss_pred HHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCee
Confidence 1122221111 10000111 1 2579999999 8887775 4679999999999842 22112233444333
Q ss_pred --------hhcceeeeC--C-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 040486 393 --------VWKVGLHLE--R-KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISY 456 (460)
Q Consensus 393 --------~~G~g~~~~--~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 456 (460)
+ .+=.++- . +.|++.|.+++ ++|.| +..+++.++--+++++. -|...-+.+|.+..
T Consensus 536 sLpNIIagr-~VvPEllqgQ~~~tpe~La~~l-~lL~d---~~~r~~~~~~l~~lr~~---Lg~~~~~~~~~~~~ 602 (608)
T PRK01021 536 SLPNIILGS-TIFPEFIGGKKDFQPEEVAAAL-DILKT---SQSKEKQKDACRDLYQA---MNESASTMKECLSL 602 (608)
T ss_pred ehhHHhcCC-CcchhhcCCcccCCHHHHHHHH-HHhcC---HHHHHHHHHHHHHHHHH---hcCCCCCHHHHHHH
Confidence 1 2223333 2 57899999997 88888 44444333333333332 23333344444443
No 100
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.37 E-value=0.00011 Score=74.18 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=71.1
Q ss_pred cCCCCccccccChh---hhhccCCCcccccc---cCch-hHHHHHhhCCceeccccccchhhhHHHHhhhh------cce
Q 040486 331 LDGRGHMVKWAPQQ---EVLAHPATGGFWTH---CGWN-STLESICEGVPMICQPCFGDQMVNARYVSDVW------KVG 397 (460)
Q Consensus 331 ~~~~~~v~~~vp~~---~~l~~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~------G~g 397 (460)
.+.++.+....+.. .+++.+|+ +|.- -|.| +.+||+++|+|.|+....+ ....+.+ . +.|
T Consensus 344 ~~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~-~~~~~~~~~G 416 (473)
T TIGR02095 344 YPGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVD-GDPEAESGTG 416 (473)
T ss_pred CCCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEec-CCCCCCCCce
Confidence 34455555555543 47888998 7743 2444 8899999999999865432 2222332 2 678
Q ss_pred eeeCCccCHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 398 LHLERKLERGEVERTIRRVMT----EAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 398 ~~~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
..++. -+.++|.++|.+++. | +..+ +++++... .+.-|-++.+++.++.+++
T Consensus 417 ~l~~~-~d~~~la~~i~~~l~~~~~~---~~~~---~~~~~~~~---~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 417 FLFEE-YDPGALLAALSRALRLYRQD---PSLW---EALQKNAM---SQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred EEeCC-CCHHHHHHHHHHHHHHHhcC---HHHH---HHHHHHHh---ccCCCcHHHHHHHHHHHHh
Confidence 77766 678899999999887 5 3322 23333322 2456677777888777665
No 101
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=2e-05 Score=73.61 Aligned_cols=350 Identities=15% Similarity=0.115 Sum_probs=184.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhc
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQC 93 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
++||.+++.-..|++.- -.|.++|.++=-+|.|++-. .....+ .|++ + -++........+.+.+..+...
T Consensus 1 ~~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvg-G~~m~a--eG~~--s---l~~~~elsvmGf~EVL~~lp~l- 70 (381)
T COG0763 1 MLKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVG-GEKMEA--EGLE--S---LFDMEELSVMGFVEVLGRLPRL- 70 (381)
T ss_pred CceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEec-cHHHHh--ccCc--c---ccCHHHHHHhhHHHHHHHHHHH-
Confidence 47899999888888875 46788888874477777553 111211 2322 1 1111111223333333333221
Q ss_pred chhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHH---HHcC--CceEEEecccHHHHHHHHhcchhhccCCCCCC
Q 040486 94 VVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVA---ESLK--LSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIR 168 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A---~~lg--iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (460)
....+++++.+.. .|||++|.=..--+...+| ++.| +|.|.+...+.+.+..
T Consensus 71 lk~~~~~~~~i~~-------~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWAWr~---------------- 127 (381)
T COG0763 71 LKIRRELVRYILA-------NKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAWRP---------------- 127 (381)
T ss_pred HHHHHHHHHHHHh-------cCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceeeech----------------
Confidence 2223445565555 6899887533333344444 4456 9988865432211000
Q ss_pred CCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHhhcccccEEEEcChhHhhHHHHHHhhhcCCCCccccC-CCCc
Q 040486 169 DSQSEAPVPELPPLRVKDIPVVETCYRETLHRLVTEATNQMKVSSGCIWNSLQDLELASLTKFHQDFPIPMFPIG-PFHK 247 (460)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG-~l~~ 247 (460)
.+...+. +.+|.++ .-+| ||+.. .+.++.|..||| |+..
T Consensus 128 ------------------------~Ra~~i~----------~~~D~lL-ailP-FE~~~----y~k~g~~~~yVGHpl~d 167 (381)
T COG0763 128 ------------------------KRAVKIA----------KYVDHLL-AILP-FEPAF----YDKFGLPCTYVGHPLAD 167 (381)
T ss_pred ------------------------hhHHHHH----------HHhhHee-eecC-CCHHH----HHhcCCCeEEeCChhhh
Confidence 1111111 1222222 2222 44442 333466799999 4443
Q ss_pred CCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcC-----CCCEEEEEcCCccCCCccCCC
Q 040486 248 FFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANS-----KVPFLWVVRPGLVRGAEWIEP 322 (460)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~ 322 (460)
..+ ..+....+.+-+.-..+++++.+--||-...-...+..+.++.+++ +.+++.-+..... +.
T Consensus 168 ~i~-----~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~------~~ 236 (381)
T COG0763 168 EIP-----LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY------RR 236 (381)
T ss_pred hcc-----ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH------HH
Confidence 321 1223333444444445778999999997652222333344444432 4677666544321 00
Q ss_pred CchhHHhhcCCCC-ccccccC-h--hhhhccCCCcccccccCchhHHHHHhhCCceecccc-ccchhhhHHHHhhhhcc-
Q 040486 323 LPQGFLETLDGRG-HMVKWAP-Q--QEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPC-FGDQMVNARYVSDVWKV- 396 (460)
Q Consensus 323 lp~~~~~~~~~~~-~v~~~vp-~--~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~-~~DQ~~na~~v~~~~G~- 396 (460)
+- .+..+.+. ...-++. + .+++..||+ .+.-+|-. +.|+..+|+|||+.=- ..=-...|++... +..
T Consensus 237 ~~---~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yi 309 (381)
T COG0763 237 II---EEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYV 309 (381)
T ss_pred HH---HHHhhccccCceEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcc
Confidence 11 11111111 1222222 2 357888888 77777754 5799999999998311 1111222333222 111
Q ss_pred -------eeeeCC-----ccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 397 -------GLHLER-----KLERGEVERTIRRVMTEAE-GQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 397 -------g~~~~~-----~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
|..+-+ ..+++.|.+++.+++.|.. ...+++...+|.+.++ .++.++.+++.+++.++
T Consensus 310 sLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 310 SLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred cchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 212211 5889999999999999952 4566777777777776 66788999999988764
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.36 E-value=9.5e-05 Score=74.27 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=86.6
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHc---CCCCEEEEEcCCccCCCccCCCCchhH---HhhcCCCCcc-ccccCh--hh
Q 040486 275 VIYVSFGSIAAINETEFLEVAWGLAN---SKVPFLWVVRPGLVRGAEWIEPLPQGF---LETLDGRGHM-VKWAPQ--QE 345 (460)
Q Consensus 275 ~v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~---~~~~~~~~~v-~~~vp~--~~ 345 (460)
.+++..|.... .+.+..+++|++. .+.++++. +.+.. ...+.+ .+..+.++.+ .++-.. ..
T Consensus 283 ~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lviv-G~g~~-------~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 283 PLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLL-GTGDP-------ELEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred cEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEE-ecCcH-------HHHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 45556676653 3444445555544 35566554 32210 011111 2233334333 355222 25
Q ss_pred hhccCCCcccccc---cCch-hHHHHHhhCCceecccccc--chhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 346 VLAHPATGGFWTH---CGWN-STLESICEGVPMICQPCFG--DQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 346 ~l~~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
+++.+|+ +|.- -|.| +.+||+++|+|.|+....+ |.-.+...-.+. +.|..++. -+.++|.++|.+++++
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-~d~~~la~~i~~~l~~ 428 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-FNAEDLLRALRRALEL 428 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHHHH
Confidence 7889998 7743 3554 8899999999999865432 211111111232 67877766 6789999999998863
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 420 AEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
...+.. .+++++... .+.-+-++.+++.++.+++
T Consensus 429 ~~~~~~---~~~~~~~~~---~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 429 YRQPPL---WRALQRQAM---AQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred hcCHHH---HHHHHHHHh---ccCCChHHHHHHHHHHHHH
Confidence 110222 223333222 2445556666666665543
No 103
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=3.7e-05 Score=72.09 Aligned_cols=160 Identities=16% Similarity=0.207 Sum_probs=99.0
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHH----HcC-CCCEEEEEcCCccCCCccCCCCchhHHhhcCC--CCccc---cc
Q 040486 271 TPKSVIYVSFGSIAAINETEFLEVAWGL----ANS-KVPFLWVVRPGLVRGAEWIEPLPQGFLETLDG--RGHMV---KW 340 (460)
Q Consensus 271 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al----~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~--~~~v~---~~ 340 (460)
+.+..+.+|+=-..... +.+..+++++ ++. .+.+|..+.... . +-+-..+++++ ++.+. +|
T Consensus 202 ~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~--~------v~e~~~~~L~~~~~v~li~pl~~ 272 (383)
T COG0381 202 KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP--R------VRELVLKRLKNVERVKLIDPLGY 272 (383)
T ss_pred ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh--h------hhHHHHHHhCCCCcEEEeCCcch
Confidence 34568888764433332 3444455544 444 445555544331 1 11111234443 35554 56
Q ss_pred cChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccc
Q 040486 341 APQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEA 420 (460)
Q Consensus 341 vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~ 420 (460)
.+...++.++.+ ++|-+|. -.-||-..|+|++++=...+|+. +++. |.-+.+. .+.+.|.+++.+++++
T Consensus 273 ~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lvg--~~~~~i~~~~~~ll~~- 341 (383)
T COG0381 273 LDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILVG--TDEENILDAATELLED- 341 (383)
T ss_pred HHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEeC--ccHHHHHHHHHHHhhC-
Confidence 677889999988 9998884 46899999999999999999987 3442 5444443 4779999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 040486 421 EGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISY 456 (460)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 456 (460)
+...++.+....-+- +|.++++.++.+.++
T Consensus 342 --~~~~~~m~~~~npYg----dg~as~rIv~~l~~~ 371 (383)
T COG0381 342 --EEFYERMSNAKNPYG----DGNASERIVEILLNY 371 (383)
T ss_pred --hHHHHHHhcccCCCc----CcchHHHHHHHHHHH
Confidence 666665555544443 344555555544443
No 104
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.31 E-value=0.00014 Score=72.01 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=54.9
Q ss_pred CCCCccccccChh---hhhccCCCccccccc---Cc-hhHHHHHhhCCceeccccccchhhhHHHHh---hhhcceeeeC
Q 040486 332 DGRGHMVKWAPQQ---EVLAHPATGGFWTHC---GW-NSTLESICEGVPMICQPCFGDQMVNARYVS---DVWKVGLHLE 401 (460)
Q Consensus 332 ~~~~~v~~~vp~~---~~l~~~~~~~~I~Hg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~---~~~G~g~~~~ 401 (460)
.+++.+.+++|+. .+|+.+++ +|+-. |. -++.||+++|+|+|+.-..+. ....++ +. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe-
Confidence 4567888999875 47888888 66422 22 488999999999998543321 112233 43 567654
Q ss_pred CccCHHHHHHHHHHHhcc
Q 040486 402 RKLERGEVERTIRRVMTE 419 (460)
Q Consensus 402 ~~~~~~~l~~~i~~ll~~ 419 (460)
.+.++++++|.+++++
T Consensus 377 --~d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 --STAEEYAEAIEKILSL 392 (419)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 2899999999999986
No 105
>PLN02949 transferase, transferring glycosyl groups
Probab=98.27 E-value=0.0001 Score=73.32 Aligned_cols=112 Identities=18% Similarity=0.109 Sum_probs=67.5
Q ss_pred CCCCccccccChhh---hhccCCCccccc---ccCch-hHHHHHhhCCceeccccccchhhhHHHHhh--hhcceeeeCC
Q 040486 332 DGRGHMVKWAPQQE---VLAHPATGGFWT---HCGWN-STLESICEGVPMICQPCFGDQMVNARYVSD--VWKVGLHLER 402 (460)
Q Consensus 332 ~~~~~v~~~vp~~~---~l~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~--~~G~g~~~~~ 402 (460)
.+++.+.+++|+.+ +|+.+++ +|+ +-|.| ++.||+++|+|+|+....+- ....+.+ .-..|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp---~~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGP---KMDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCC---cceeeecCCCCcccccC--
Confidence 35677889998654 7888888 663 23444 79999999999999765431 0011111 00123222
Q ss_pred ccCHHHHHHHHHHHhccc-h-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 403 KLERGEVERTIRRVMTEA-E-GQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~-~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
-+.++++++|.+++++. + ...+.+++++-.++ =|.++..+++.+.+++
T Consensus 407 -~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--------FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 -TTVEEYADAILEVLRMRETERLEIAAAARKRANR--------FSEQRFNEDFKDAIRP 456 (463)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------cCHHHHHHHHHHHHHH
Confidence 27899999999999841 1 23444444443332 4466666666665543
No 106
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.26 E-value=0.00066 Score=66.70 Aligned_cols=152 Identities=9% Similarity=-0.006 Sum_probs=82.3
Q ss_pred EEEccccccCCHHHHHHHHHHHHcCCCCE-EEEEcCCccCCCccCCCCchhHHhhcCCCCccccccC-h---hhhhccCC
Q 040486 277 YVSFGSIAAINETEFLEVAWGLANSKVPF-LWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAP-Q---QEVLAHPA 351 (460)
Q Consensus 277 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp-~---~~~l~~~~ 351 (460)
++..|............+++|+..++.++ ++.++.+.. ..++++ ...++.. + .++++.+|
T Consensus 244 il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~-------~~~~~v--------~~~g~~~~~~~l~~~y~~aD 308 (405)
T PRK10125 244 IAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP-------FTAGNV--------VNHGFETDKRKLMSALNQMD 308 (405)
T ss_pred EEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc-------ccccce--------EEecCcCCHHHHHHHHHhCC
Confidence 33445422223344567888888875443 344443210 011222 3345542 2 34677788
Q ss_pred Cccccccc----CchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchHHHHHH
Q 040486 352 TGGFWTHC----GWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEGQEIRV 427 (460)
Q Consensus 352 ~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 427 (460)
+ ||.-+ --.++.||+++|+|+|+....+ ....+ ++ +.|..++. -+.+.|+++++..+.+ ..+.+
T Consensus 309 v--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~-~d~~~La~~~~~~~~~---~~~~~ 376 (405)
T PRK10125 309 A--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSE-EEVLQLAQLSKPEIAQ---AVFGT 376 (405)
T ss_pred E--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECC-CCHHHHHhccCHHHHH---Hhhhh
Confidence 8 77643 2468999999999999977654 22333 33 57887776 4777788654322222 11211
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 428 RIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 428 ~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
..+...++.. +.-+...-+++.++.+++
T Consensus 377 ~~~~~r~~~~----~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 377 TLAEFSQRSR----AAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred HHHHHHHHHH----HhCCHHHHHHHHHHHHHh
Confidence 1122222222 445667777777776654
No 107
>PLN02316 synthase/transferase
Probab=98.24 E-value=0.00097 Score=71.42 Aligned_cols=118 Identities=11% Similarity=0.035 Sum_probs=72.3
Q ss_pred CCCccccccChh---hhhccCCCccccccc---C-chhHHHHHhhCCceecccccc--chhhh-------HHHHhhhhcc
Q 040486 333 GRGHMVKWAPQQ---EVLAHPATGGFWTHC---G-WNSTLESICEGVPMICQPCFG--DQMVN-------ARYVSDVWKV 396 (460)
Q Consensus 333 ~~~~v~~~vp~~---~~l~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~--DQ~~n-------a~~v~~~~G~ 396 (460)
+++.+....+.. .+++.+|+ |+.-+ | -.+.+||+++|+|.|+....+ |.-.. ++..... +.
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-Cc
Confidence 344555444543 58899998 88533 3 348999999999888754432 22111 1111111 45
Q ss_pred eeeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 397 GLHLERKLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 397 g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
|...+. .+++.|..+|.+++.+ |....+.+++..+.++...-|-.+.+++.++.+++
T Consensus 977 Gflf~~-~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 977 GFSFDG-ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred eEEeCC-CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 766665 6889999999999976 33444445555555555566666666666665543
No 108
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.24 E-value=0.00019 Score=68.64 Aligned_cols=194 Identities=16% Similarity=0.121 Sum_probs=107.1
Q ss_pred hcCCCCccccC-CCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHc-----CCCCEE
Q 040486 233 QDFPIPMFPIG-PFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLAN-----SKVPFL 306 (460)
Q Consensus 233 ~~~~~p~~~vG-~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i 306 (460)
+..+.++.||| |+...-.. ........+.+ -..++++|.+=-||-..--...+..++++.+. .+.+++
T Consensus 149 ~~~g~~~~~VGHPl~d~~~~-----~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fv 222 (373)
T PF02684_consen 149 KKHGVPVTYVGHPLLDEVKP-----EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFV 222 (373)
T ss_pred hccCCCeEEECCcchhhhcc-----CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 33467899999 55544322 11111122222 22467899999999665223333445555443 245566
Q ss_pred EEEcCCccCCCccCCCCchhHHhh---cCCCCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccc-ccc
Q 040486 307 WVVRPGLVRGAEWIEPLPQGFLET---LDGRGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQP-CFG 381 (460)
Q Consensus 307 ~~~~~~~~~~~~~~~~lp~~~~~~---~~~~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P-~~~ 381 (460)
+...... ...-+.+. ...++.+. ..-.-.+++..+++ .+.-+|- .+.|+...|+|||++= ...
T Consensus 223 vp~a~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~ 290 (373)
T PF02684_consen 223 VPVAPEV---------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSP 290 (373)
T ss_pred EecCCHH---------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcH
Confidence 5554321 11111111 11111222 11234578889998 7777764 5789999999998843 222
Q ss_pred chhhhHHHHhhhhcc--------eeee----CC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 040486 382 DQMVNARYVSDVWKV--------GLHL----ER-KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQ 448 (460)
Q Consensus 382 DQ~~na~~v~~~~G~--------g~~~----~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~ 448 (460)
=-...|+++.. ... |..+ -- +.|++.|.+.+.+++.| +..++..+...+.+++....+.++..
T Consensus 291 lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 291 LTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHH
Confidence 23344555433 121 2122 11 68999999999999999 55566666666666655556665554
No 109
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.14 E-value=0.0003 Score=71.02 Aligned_cols=117 Identities=14% Similarity=0.064 Sum_probs=67.9
Q ss_pred CCCCccccccChh---hhhccCCCccccccc---Cc-hhHHHHHhhCCceecccccc--chhhhHHHHhhhhcceeeeCC
Q 040486 332 DGRGHMVKWAPQQ---EVLAHPATGGFWTHC---GW-NSTLESICEGVPMICQPCFG--DQMVNARYVSDVWKVGLHLER 402 (460)
Q Consensus 332 ~~~~~v~~~vp~~---~~l~~~~~~~~I~Hg---G~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~ 402 (460)
.+++.+....++. .+++.+|+ ++.-. |. .+.+||+++|+|+|+....+ |.-.+...-.+. |.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC
Confidence 3555554333332 47888998 66432 23 47899999999999865432 211111111132 57888876
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 403 KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
-+.++|.+++.+++++. .-++...+++++.. ...-+-++.+++.++.++
T Consensus 427 -~~~~~l~~~i~~~l~~~---~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 427 -YNADALLAALRRALALY---RDPEAWRKLQRNAM---AQDFSWDRSAKEYLELYR 475 (476)
T ss_pred -CCHHHHHHHHHHHHHHH---cCHHHHHHHHHHHh---ccCCChHHHHHHHHHHHh
Confidence 57899999999988641 11233333333333 234455666777766654
No 110
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.08 E-value=6.1e-05 Score=72.10 Aligned_cols=139 Identities=12% Similarity=0.168 Sum_probs=79.5
Q ss_pred CCCeEEEEEccccccCC-H---HHHHHHHHHHHcC-CCCEEEEEcCCccCCCccCCCCchhHHhhcC--CCCccccccCh
Q 040486 271 TPKSVIYVSFGSIAAIN-E---TEFLEVAWGLANS-KVPFLWVVRPGLVRGAEWIEPLPQGFLETLD--GRGHMVKWAPQ 343 (460)
Q Consensus 271 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~v~~~vp~ 343 (460)
.+++.+++++=...... + ..+..+++++.+. ++++||.+..... ....+.+... +++++...+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~--------~~~~i~~~l~~~~~v~~~~~l~~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR--------GSDIIIEKLKKYDNVRLIEPLGY 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH--------HHHHHHHHHTT-TTEEEE----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch--------HHHHHHHHhcccCCEEEECCCCH
Confidence 56789999985544433 3 3445566666665 6788888874321 1112222121 36677766665
Q ss_pred ---hhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhh-hcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 344 ---QEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDV-WKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 344 ---~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~-~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+++++++ +|+.+| |-..||.+.|+|+|.+= .+..|-+-. .|..+-+ ..+.+.|.+++.+++++
T Consensus 250 ~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR------~~geRqe~r~~~~nvlv--~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 250 EEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIR------DSGERQEGRERGSNVLV--GTDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECS------SS-S-HHHHHTTSEEEE--TSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEec------CCCCCHHHHhhcceEEe--CCCHHHHHHHHHHHHhC
Confidence 468899999 999999 55559999999999982 223332221 1444443 36899999999999987
Q ss_pred chHHHHHHHHHH
Q 040486 420 AEGQEIRVRIMI 431 (460)
Q Consensus 420 ~~~~~~~~~a~~ 431 (460)
..+..+.+.
T Consensus 319 ---~~~~~~~~~ 327 (346)
T PF02350_consen 319 ---KDFYRKLKN 327 (346)
T ss_dssp ---HHHHHHHHC
T ss_pred ---hHHHHhhcc
Confidence 445544433
No 111
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.06 E-value=0.001 Score=67.09 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=75.1
Q ss_pred CCCccccccChhhhhccCCCccccc---ccCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC---ccC
Q 040486 333 GRGHMVKWAPQQEVLAHPATGGFWT---HCGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER---KLE 405 (460)
Q Consensus 333 ~~~~v~~~vp~~~~l~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~---~~~ 405 (460)
+++.+.++.+..+++..+++ +|. .-|. .++.||+++|+|+|+.... ..+...+++. .-|..++. .-+
T Consensus 376 ~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~d 449 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEEDD 449 (500)
T ss_pred CeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCccccc
Confidence 45677788887889999998 765 2343 5999999999999995432 1245566663 56776652 122
Q ss_pred ----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 406 ----RGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 406 ----~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
.+.|+++|.+++++.....+.+++++.++.+ +....++...+.+++
T Consensus 450 ~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~f--------s~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 450 EDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGF--------LTANIIEKWKKLVRE 499 (500)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhh
Confidence 7889999999996532344555555544443 456666666666654
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.04 E-value=0.0012 Score=66.45 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=70.9
Q ss_pred CCCccccccChhhhhccCCCccccccc----CchhHHHHHhhCCceeccccccchhhhHHHHhhh----h-cceeeeCCc
Q 040486 333 GRGHMVKWAPQQEVLAHPATGGFWTHC----GWNSTLESICEGVPMICQPCFGDQMVNARYVSDV----W-KVGLHLERK 403 (460)
Q Consensus 333 ~~~~v~~~vp~~~~l~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~----~-G~g~~~~~~ 403 (460)
+++.+.+...-.++++.+++ +|.-+ --.++.||+++|+|+|+. |.......+++. + ..|..++.
T Consensus 354 ~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~- 426 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP- 426 (475)
T ss_pred CeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC-
Confidence 56677775555678899998 66432 346899999999999984 444445555551 0 26776665
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 040486 404 LERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISY 456 (460)
Q Consensus 404 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 456 (460)
.+.+++.++|.++++| +..+++.. +..++...+.-+.++.+++..+.
T Consensus 427 ~d~~~la~ai~~ll~~---~~~~~~~~---~~a~~~v~~~~s~~~~~~~y~~l 473 (475)
T cd03813 427 ADPEALARAILRLLKD---PELRRAMG---EAGRKRVERYYTLERMIDSYRRL 473 (475)
T ss_pred CCHHHHHHHHHHHhcC---HHHHHHHH---HHHHHHHHHhCCHHHHHHHHHHH
Confidence 6899999999999999 44443332 22222222344445555555543
No 113
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.02 E-value=7.5e-05 Score=72.89 Aligned_cols=172 Identities=16% Similarity=0.122 Sum_probs=95.6
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhc------CCCCccccccChh
Q 040486 271 TPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETL------DGRGHMVKWAPQQ 344 (460)
Q Consensus 271 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~------~~~~~v~~~vp~~ 344 (460)
++..++|.+|.+.....++.+..-.+.|++.+--.+|....... -..++.+.. ++++.+.++.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~--------~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS--------GEARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT--------HHHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH--------HHHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 56679999999999999999999999999999888888764321 112332222 2455666776754
Q ss_pred h---hhccCCCcccc---cccCchhHHHHHhhCCceecccccc-chhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHh
Q 040486 345 E---VLAHPATGGFW---THCGWNSTLESICEGVPMICQPCFG-DQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVM 417 (460)
Q Consensus 345 ~---~l~~~~~~~~I---~HgG~gs~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll 417 (460)
+ .+..+|+ ++ ..+|.+|++|||+.|||+|.+|-.. =.+.-+..+.. +|+.-.+-. +.++-.+.-.++-
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~--s~~eYv~~Av~La 428 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD--SEEEYVEIAVRLA 428 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S--SHHHHHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC--CHHHHHHHHHHHh
Confidence 3 4455666 43 5689999999999999999999643 33444455666 577754433 5666655555777
Q ss_pred ccchHHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 040486 418 TEAEGQEIRVRIM-ILKEKLNLCLIQGGSSYQSLESLISYILSF 460 (460)
Q Consensus 418 ~~~~~~~~~~~a~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
+| +.++++.+ ++++++..+ .-....+++.++.+.+++|
T Consensus 429 ~D---~~~l~~lR~~Lr~~~~~S--pLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 429 TD---PERLRALRAKLRDRRSKS--PLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp H----HHHHHHHHHHHHHHHHHS--GGG-HHHHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHHh
Confidence 77 44433222 233333221 2344666777777776654
No 114
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.97 E-value=0.00033 Score=68.43 Aligned_cols=115 Identities=14% Similarity=0.172 Sum_probs=79.9
Q ss_pred cCCCCccccccChh---hhhccCCCcccccc----cCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC
Q 040486 331 LDGRGHMVKWAPQQ---EVLAHPATGGFWTH----CGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER 402 (460)
Q Consensus 331 ~~~~~~v~~~vp~~---~~l~~~~~~~~I~H----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 402 (460)
...++.+.+++|+. ++++.+|+ +|.. .|. .++.||+++|+|+|+... ..+...+++. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEeC
Confidence 34566778999865 46889999 7653 333 578899999999999654 3455667774 67875543
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 403 KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
..+.+++.++|.++++| +..+ ++++..++...+.-+-++.++++.+.+++
T Consensus 328 ~~d~~~la~~I~~ll~d---~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 328 PMTSDSIISDINRTLAD---PELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCCHHHHHHHHHHHHcC---HHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 36899999999999999 5543 33344333333556677788888877765
No 115
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.93 E-value=0.0068 Score=59.05 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=64.6
Q ss_pred CCCccccccChhh---hhccCCCcccc------cccCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC
Q 040486 333 GRGHMVKWAPQQE---VLAHPATGGFW------THCGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER 402 (460)
Q Consensus 333 ~~~~v~~~vp~~~---~l~~~~~~~~I------~HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 402 (460)
+|+.+.+++|+.+ .++++|+.++- +.++. +.+.|++++|+|+|..++ ...++.. + |..+..
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~ 324 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIA 324 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeC
Confidence 5668899999754 67888983332 22333 468999999999998753 2233432 4 322322
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 403 KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
-+.+++.++|.+++.+......+++ .+ +. +.-+-++.++++.+.|+
T Consensus 325 -~d~~~~~~ai~~~l~~~~~~~~~~~----~~-~~----~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 325 -DDPEEFVAAIEKALLEDGPARERRR----LR-LA----AQNSWDARAAEMLEALQ 370 (373)
T ss_pred -CCHHHHHHHHHHHHhcCCchHHHHH----HH-HH----HHCCHHHHHHHHHHHHH
Confidence 3799999999997765221112211 11 22 34455666777766654
No 116
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.87 E-value=0.00032 Score=69.19 Aligned_cols=165 Identities=13% Similarity=0.093 Sum_probs=94.1
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHcC-----CCCEEEEEcCCccCCCccCCCCchhHHh-hcCCCCccccccChhh-
Q 040486 273 KSVIYVSFGSIAAINETEFLEVAWGLANS-----KVPFLWVVRPGLVRGAEWIEPLPQGFLE-TLDGRGHMVKWAPQQE- 345 (460)
Q Consensus 273 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~v~~~vp~~~- 345 (460)
++..++++|.... ...+..+++++..+ +.++.|..-++.... ..+-.-+.+ ....++.+.+|+++.+
T Consensus 229 ~~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~----~~l~~~~~~~~~~~~V~f~G~v~~~e~ 302 (407)
T cd04946 229 DTLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGPLE----DTLKELAESKPENISVNFTGELSNSEV 302 (407)
T ss_pred CCEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHH----HHHHHHHHhcCCCceEEEecCCChHHH
Confidence 3445566777664 23344455555442 236666654432110 001111111 1123567789999764
Q ss_pred --hhccCCCcccccccC----chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 346 --VLAHPATGGFWTHCG----WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 346 --~l~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
++..+++.++|..+- -.+++||+++|+|+|+.. .......+.+. +.|..+....+.+++.++|.++++|
T Consensus 303 ~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~-~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 303 YKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNG-GNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCC-CcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 454433333765543 468999999999999844 44456677773 5888776656889999999999998
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 040486 420 AEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLI 454 (460)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 454 (460)
+..++ +|++..++...+.-+.+...++++
T Consensus 378 ---~~~~~---~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 378 ---EEEYQ---TMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred ---HHHHH---HHHHHHHHHHHHHcCHHHhHHHhc
Confidence 43332 333333333334455555555543
No 117
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=9.4e-05 Score=57.93 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=78.7
Q ss_pred EEEEccccccCCHHHHHH--HHHHHHcCCCCEEEEEcCCccCCCccCCCCc-hhHHhhcCCCCccccc--cCh-hhhhcc
Q 040486 276 IYVSFGSIAAINETEFLE--VAWGLANSKVPFLWVVRPGLVRGAEWIEPLP-QGFLETLDGRGHMVKW--APQ-QEVLAH 349 (460)
Q Consensus 276 v~vs~Gs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp-~~~~~~~~~~~~v~~~--vp~-~~~l~~ 349 (460)
+|||.||....-...+.. +..-.+....++|.+++.+.. .| ++. .+.+| -+- +.+.+.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--------kpvagl--------~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--------KPVAGL--------RVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--------cccccc--------EEEeechHHHHHHHhhc
Confidence 799999984321222211 222222334678899887542 22 222 44444 333 456667
Q ss_pred CCCcccccccCchhHHHHHhhCCceecccccc--------chhhhHHHHhhhhcceeeeCC-cc-CHHHHHHHHHHHhc
Q 040486 350 PATGGFWTHCGWNSTLESICEGVPMICQPCFG--------DQMVNARYVSDVWKVGLHLER-KL-ERGEVERTIRRVMT 418 (460)
Q Consensus 350 ~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~~G~g~~~~~-~~-~~~~l~~~i~~ll~ 418 (460)
+++ +|+|+|.||+..++..++|.+++|-.. .|-..|..+.+ ++.=....+ +. =.+-+.....+++.
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTELVLQAGLQVSVADVLH 141 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCchhhHHhHhhhhhhhcC
Confidence 777 999999999999999999999999743 58888888888 687777765 22 23334444444443
No 118
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.78 E-value=0.025 Score=56.79 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=67.5
Q ss_pred CCCccccccCh-hhhhccCCCcccccc---cC-chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHH
Q 040486 333 GRGHMVKWAPQ-QEVLAHPATGGFWTH---CG-WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERG 407 (460)
Q Consensus 333 ~~~~v~~~vp~-~~~l~~~~~~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 407 (460)
+++.+.++..+ ..+|+.+|+ ||.. -| -+++.||+++|+|+|+... ..+...+.+. ..|..++. -+.+
T Consensus 455 d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~-~D~~ 526 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD-AQTV 526 (578)
T ss_pred CcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC-CChh
Confidence 56677788655 368999999 8753 45 4699999999999998544 4566777774 78888766 2344
Q ss_pred HHHHHH---HHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 408 EVERTI---RRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 408 ~l~~~i---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
.+.+++ .++..+ . +...++++..++...+.-+.+..+++..+.+-
T Consensus 527 aLa~ai~lA~aL~~l---l---~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~ 574 (578)
T PRK15490 527 NLDQACRYAEKLVNL---W---RSRTGICQQTQSFLQERFTVEHMVGTFVKTIA 574 (578)
T ss_pred hHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 444444 222222 1 11112333333323345556666666666553
No 119
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.63 E-value=0.0099 Score=57.77 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=67.0
Q ss_pred CCCccccccChh-hhhccCCCccccccc--CchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHH
Q 040486 333 GRGHMVKWAPQQ-EVLAHPATGGFWTHC--GWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEV 409 (460)
Q Consensus 333 ~~~~v~~~vp~~-~~l~~~~~~~~I~Hg--G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l 409 (460)
+++.+.++.++. .++..+++-++.++. ...++.||+++|+|+|+..... .....+++. ..|..++. -+.+++
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-~d~~~l 335 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-GDIEAL 335 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-CcHHHH
Confidence 445667776664 689999994444442 3469999999999999854331 234556664 77877765 688999
Q ss_pred HHHHHHHhccch-HHHHHHHHHHHHHHH
Q 040486 410 ERTIRRVMTEAE-GQEIRVRIMILKEKL 436 (460)
Q Consensus 410 ~~~i~~ll~~~~-~~~~~~~a~~~~~~~ 436 (460)
.++|.++++|.+ ...+.+++++.++++
T Consensus 336 a~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 336 AEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 999999999832 334444444444333
No 120
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.59 E-value=0.026 Score=57.74 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=52.0
Q ss_pred CccccccChh-hhhccCCCccccccc---C-chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHH
Q 040486 335 GHMVKWAPQQ-EVLAHPATGGFWTHC---G-WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEV 409 (460)
Q Consensus 335 ~~v~~~vp~~-~~l~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l 409 (460)
+.+.++.++. ++++.+|+ ||.-+ | -.++.||+++|+|+|+....+... +.+. +.|. +. -+.+++
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nGl-l~--~D~Eaf 671 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNCL-TY--KTSEDF 671 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCeE-ec--CCHHHH
Confidence 4456677765 58999998 77632 3 468999999999999976654321 3332 3333 22 368999
Q ss_pred HHHHHHHhcc
Q 040486 410 ERTIRRVMTE 419 (460)
Q Consensus 410 ~~~i~~ll~~ 419 (460)
.++|.++|+|
T Consensus 672 AeAI~~LLsd 681 (794)
T PLN02501 672 VAKVKEALAN 681 (794)
T ss_pred HHHHHHHHhC
Confidence 9999999998
No 121
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.52 E-value=0.11 Score=51.05 Aligned_cols=163 Identities=12% Similarity=0.179 Sum_probs=92.0
Q ss_pred cccCCCCCCeEEEEEccccccC------C----HHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCC--CchhHHhhcC
Q 040486 265 SWLDKQTPKSVIYVSFGSIAAI------N----ETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEP--LPQGFLETLD 332 (460)
Q Consensus 265 ~~l~~~~~~~~v~vs~Gs~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~--lp~~~~~~~~ 332 (460)
.|+.....+++|-|+.-..... . .+.+..+++.+.+.++++++........... .++ .-..+.+..+
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~-~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYN-KDDRMVALNLRQHVS 304 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCC-CchHHHHHHHHHhcc
Confidence 4554333456787776543311 1 2233445555555688887664321110000 000 1122333333
Q ss_pred C--CCcc-c-cccChh--hhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceee-eCC-cc
Q 040486 333 G--RGHM-V-KWAPQQ--EVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLH-LER-KL 404 (460)
Q Consensus 333 ~--~~~v-~-~~vp~~--~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~-~~~-~~ 404 (460)
. +.++ . .+-+.+ .++++|++ +|..= +=++.-|+..|||.+.++. | +-...-+++ +|.... .+. ++
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~~~l 377 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDIRHL 377 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEechhhC
Confidence 2 2233 2 233433 68889998 77432 3355668899999999988 3 444444577 688766 455 78
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 040486 405 ERGEVERTIRRVMTEAEGQEIRVRIMILKEKLN 437 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 437 (460)
+.++|.+.+.++++|. +.+++..++--++++
T Consensus 378 ~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r 408 (426)
T PRK10017 378 LDGSLQAMVADTLGQL--PALNARLAEAVSRER 408 (426)
T ss_pred CHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHH
Confidence 9999999999999985 455555555444444
No 122
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.49 E-value=0.001 Score=56.87 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=63.3
Q ss_pred CCCCccccccCh---hhhhccCCCcccccc----cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCcc
Q 040486 332 DGRGHMVKWAPQ---QEVLAHPATGGFWTH----CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKL 404 (460)
Q Consensus 332 ~~~~~v~~~vp~---~~~l~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 404 (460)
++++.+.+++++ ..++..+++ +|+. |...++.||+++|+|+|+ .|...+...+.+. +.|..++. -
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~~-~~g~~~~~-~ 143 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIINDG-VNGFLFDP-N 143 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGTT-TSEEEEST-T
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceee----ccccCCceeeccc-cceEEeCC-C
Confidence 356678888883 368889999 8876 566799999999999997 5667777788874 77888877 4
Q ss_pred CHHHHHHHHHHHhcc
Q 040486 405 ERGEVERTIRRVMTE 419 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~ 419 (460)
+.+++.++|.++++|
T Consensus 144 ~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 144 DIEELADAIEKLLND 158 (172)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC
Confidence 999999999999999
No 123
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.43 E-value=0.014 Score=51.74 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=34.8
Q ss_pred CCCccccccCh-h---hhhccCCCcccccccC----chhHHHHHhhCCceeccccccc
Q 040486 333 GRGHMVKWAPQ-Q---EVLAHPATGGFWTHCG----WNSTLESICEGVPMICQPCFGD 382 (460)
Q Consensus 333 ~~~~v~~~vp~-~---~~l~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~D 382 (460)
+|+.+.+++++ . .++..+++ +|+-.. .+++.||+++|+|+|+.+..+.
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 44567777632 2 24445888 887776 7899999999999999776543
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.42 E-value=0.00087 Score=64.16 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=80.4
Q ss_pred CCCccccccChhhh---hccCCCccccccc-------Cc------hhHHHHHhhCCceeccccccchhhhHHHHhhhhcc
Q 040486 333 GRGHMVKWAPQQEV---LAHPATGGFWTHC-------GW------NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKV 396 (460)
Q Consensus 333 ~~~~v~~~vp~~~~---l~~~~~~~~I~Hg-------G~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 396 (460)
+|+.+.+|+|+.++ |.. +.+++...- .+ +-+.+.+++|+|+|+ .++...+..|++. ++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~----~~~~~~~~~V~~~-~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV----WSKAAIADFIVEN-GL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEE----CCCccHHHHHHhC-Cc
Confidence 44588899998765 444 443333221 11 237778999999998 4667788999995 99
Q ss_pred eeeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 040486 397 GLHLERKLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISY 456 (460)
Q Consensus 397 g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 456 (460)
|..++ +.+++.+++.++ ++++...|++|+++++++++ .|.--.+++++++..
T Consensus 281 G~~v~---~~~el~~~l~~~-~~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 281 GFVVD---SLEELPEIIDNI-TEEEYQEMVENVKKISKLLR----NGYFTKKALVDAIKE 332 (333)
T ss_pred eEEeC---CHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHhc
Confidence 99987 557888888875 44445789999999999999 677777777777654
No 125
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.32 E-value=0.061 Score=49.09 Aligned_cols=112 Identities=19% Similarity=0.113 Sum_probs=73.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC--CCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHh
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNS--PNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQ 92 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
|||.+= .+-.-|+.-+-.+.++|.++||+|.+-+-+... +....+ ||.+..+...- ...+.+.+......
T Consensus 1 mkVwiD-I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y-gf~~~~Igk~g------~~tl~~Kl~~~~eR 72 (346)
T COG1817 1 MKVWID-IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY-GFPYKSIGKHG------GVTLKEKLLESAER 72 (346)
T ss_pred CeEEEE-cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh-CCCeEeecccC------CccHHHHHHHHHHH
Confidence 344443 245568888999999999999999998876443 223444 88888775421 11222222222111
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEeccc
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNS 146 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~ 146 (460)
...+.++... ++||+.+. -.++.+.-+|.-+|+|.+.+....
T Consensus 73 -----~~~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 73 -----VYKLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred -----HHHHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 1134455443 68999999 567788899999999999987664
No 126
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.23 E-value=0.00058 Score=51.69 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=51.9
Q ss_pred ccccccccCCCCCCeEEEEEccccccC---CH--HHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhH
Q 040486 260 DQTSISWLDKQTPKSVIYVSFGSIAAI---NE--TEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGF 327 (460)
Q Consensus 260 ~~~l~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~ 327 (460)
...+.+|+...+.++.|+||+||.... .. ..+..++++++.++..+|.++....... ++.+|+|+
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~---lg~lP~nV 96 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAE---LGELPDNV 96 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGG---CCS-TTTE
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHh---hCCCCCCC
Confidence 345788999888999999999998873 22 4788899999999999999998765433 56788775
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.12 E-value=0.0011 Score=54.00 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=49.7
Q ss_pred CCCCccccccCh-hhhhccCCCcccccc--cC-chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHH
Q 040486 332 DGRGHMVKWAPQ-QEVLAHPATGGFWTH--CG-WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERG 407 (460)
Q Consensus 332 ~~~~~v~~~vp~-~~~l~~~~~~~~I~H--gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 407 (460)
.+++.+.+|++. .++++.+++.+..+. .| -+++.|++++|+|+|+.+. .....++.. +.|..+. -+.+
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~~--~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLVA--NDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-T--T-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEEC--CCHH
Confidence 346688899865 368899999555442 23 4899999999999999665 133344443 7777663 4899
Q ss_pred HHHHHHHHHhcc
Q 040486 408 EVERTIRRVMTE 419 (460)
Q Consensus 408 ~l~~~i~~ll~~ 419 (460)
++.++|.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999876
No 128
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.05 E-value=0.057 Score=51.30 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=44.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCee-EEecC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTNFNSPNPSNYPHFT-FCSIE 69 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~-~~~~~ 69 (460)
||+++-....|++.-+.++.++|+++ +.+|++++.+.+.+..+..+.+. ++.++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~ 57 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVA 57 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEec
Confidence 68899888999999999999999998 99999999987776666545664 44443
No 129
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.63 E-value=0.027 Score=46.04 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=62.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhcch
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQCVV 95 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
||++++.....| ...+++.|.++||+|++++.....+......|+.+..++.... .....+. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k-------~~~~~~~-~------ 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRK-------SPLNYIK-Y------ 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCC-------ccHHHHH-H------
Confidence 577777655555 5688999999999999999954433333236888888853211 1111111 1
Q ss_pred hHHHHHHHHhcccccccCCCeeEEEecCCch---hHHHHHHHcC-CceEEEec
Q 040486 96 PFRNCLAKLLSNVEEEEKEPIACLITDATWY---FTQAVAESLK-LSRIVLRT 144 (460)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~---~~~~~A~~lg-iP~v~~~~ 144 (460)
..+ .++... .+||+|.+..... .+..++...+ +|.+....
T Consensus 64 --~~l-~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 64 --FRL-RKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred --HHH-HHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 122 232222 5799998776543 3445677888 88886443
No 130
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.57 E-value=0.26 Score=47.41 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=70.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeeE-EecCCCCCCcccccccHHHHHHHHHHh
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTNFNSPNPSNYPHFTF-CSIEDSLSETEASTADLVALLSLLNVQ 92 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
||+++-..+.|++.-+.++.++|+++ +.+|++++.+.+.+..+..+.+.- +.++.... ... ...+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~-----~~~-~~~~~----- 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA-----KAG-ERKLA----- 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh-----cch-HHHHH-----
Confidence 68899889999999999999999996 899999999877666555455643 33321100 000 00000
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEE
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIV 141 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~ 141 (460)
.+..++..+.+ .++|++|.-........++...|+|..+
T Consensus 70 ---~~~~l~~~lr~-------~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 ---NQFHLIKVLRA-------NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---HHHHHHHHHHh-------CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11123455544 5799999766556677889999999766
No 131
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.057 Score=53.39 Aligned_cols=137 Identities=14% Similarity=0.168 Sum_probs=90.5
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcC------CCCccccccChh
Q 040486 271 TPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLD------GRGHMVKWAPQQ 344 (460)
Q Consensus 271 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~------~~~~v~~~vp~~ 344 (460)
++..+||++|+......++.+..-...++..+-.++|..+++..+. +-..+++... ++.++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~------~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE------INARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH------HHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 5677999999999999999999999999999999999998753211 3333433222 456666666643
Q ss_pred ---hhhccCCCccccc---ccCchhHHHHHhhCCceeccccccchhh--hHHHHhhhhcceeeeCCccCHHHHHHHHHHH
Q 040486 345 ---EVLAHPATGGFWT---HCGWNSTLESICEGVPMICQPCFGDQMV--NARYVSDVWKVGLHLERKLERGEVERTIRRV 416 (460)
Q Consensus 345 ---~~l~~~~~~~~I~---HgG~gs~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~~G~g~~~~~~~~~~~l~~~i~~l 416 (460)
+=+..+|+ |+- =||+.|..|+|..|||+|..+ |+|+. |+.-+....|+-..+-. -..+=++.++ ++
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-s~~dYV~~av-~~ 574 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-SRADYVEKAV-AF 574 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-CHHHHHHHHH-Hh
Confidence 44555776 664 599999999999999998854 66653 33333332354433322 2334455555 33
Q ss_pred hcc
Q 040486 417 MTE 419 (460)
Q Consensus 417 l~~ 419 (460)
=+|
T Consensus 575 g~d 577 (620)
T COG3914 575 GSD 577 (620)
T ss_pred ccc
Confidence 344
No 132
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.46 E-value=0.41 Score=46.13 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=72.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeeEE-ecCCCCCCcccccccHHHHHHHH
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTNFNSPNPSNYPHFTFC-SIEDSLSETEASTADLVALLSLL 89 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (460)
.++||+++-..+.|++.-+.++.++|+++ +.+|++++.+.+.+.....+.+.-+ .++.. .......+.
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~-------~~~~~~~~~-- 74 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNK-------KAGASEKIK-- 74 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccc-------cccHHHHHH--
Confidence 46899999999999999999999999997 8999999998777665554555432 23211 000000011
Q ss_pred HHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEE
Q 040486 90 NVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIV 141 (460)
Q Consensus 90 ~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~ 141 (460)
.+..++.++.+ .++|++|.-........++...|.|..+
T Consensus 75 ------~~~~l~~~lr~-------~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 75 ------NFFSLIKVLRA-------NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ------HHHHHHHHHhh-------CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 12234455554 5899999765555556777888888766
No 133
>PHA01633 putative glycosyl transferase group 1
Probab=96.41 E-value=0.016 Score=54.85 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=60.7
Q ss_pred CCCccc---cccChh---hhhccCCCccccccc---Cc-hhHHHHHhhCCceecccc------ccch------hhhHHHH
Q 040486 333 GRGHMV---KWAPQQ---EVLAHPATGGFWTHC---GW-NSTLESICEGVPMICQPC------FGDQ------MVNARYV 390 (460)
Q Consensus 333 ~~~~v~---~~vp~~---~~l~~~~~~~~I~Hg---G~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~~v 390 (460)
+++.+. +++++. ++++.+|+ ||.-+ |. .++.||+++|+|+|+--. .+|+ .++....
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 344666 455654 57888998 77642 43 589999999999998533 2333 2333222
Q ss_pred h--hhhcceeeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 040486 391 S--DVWKVGLHLERKLERGEVERTIRRVMTEAEGQEIRVRIMILKEKL 436 (460)
Q Consensus 391 ~--~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~ 436 (460)
. .. |.|..++. .++++++++|.+++...+.+....++++.++++
T Consensus 279 ~~~~~-g~g~~~~~-~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 279 YDKEH-GQKWKIHK-FQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred cCccc-CceeeecC-CCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 2 22 56666554 799999999999954321122233444444444
No 134
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.40 E-value=0.12 Score=48.12 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=66.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCCCCCCCCeeEE-ecCCCCCCcccccccHHHHHHHHHHh
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKG--FSITIIHTNFNSPNPSNYPHFTFC-SIEDSLSETEASTADLVALLSLLNVQ 92 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~G--h~Vt~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
||+++-..+.|++.-+.++.++|+++. -+|++++.+.+.......+.+.-+ .++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~-----~~~~~---------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLGL---------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcc-----cccch----------
Confidence 688998889999999999999999974 899999998666555543444332 222110 00000
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEE
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIV 141 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~ 141 (460)
..+..++.++.+ .++|+++--........++...+++...
T Consensus 66 --~~~~~~~~~l~~-------~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 --GARRRLARALRR-------RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --HHHHHHHHHHhh-------cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 112344555554 5799998776665555566777777655
No 135
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.33 E-value=0.2 Score=48.27 Aligned_cols=103 Identities=10% Similarity=0.036 Sum_probs=72.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeeEEe-cCCCCCCcccccccHHHHHHHHHH
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTNFNSPNPSNYPHFTFCS-IEDSLSETEASTADLVALLSLLNV 91 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 91 (460)
|||+++-..+.||+.-..++.++|+++ +.+|++++.+.+.+..+..+.++.+- ++.. . .... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~--~---~~~~----~----- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG--H---GALE----I----- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc--c---chhh----h-----
Confidence 789999999999999999999999996 99999999987766665545555432 2211 0 0000 0
Q ss_pred hcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEE
Q 040486 92 QCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIV 141 (460)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~ 141 (460)
.....++.++.+ .++|++|.-....-...++...|+|..+
T Consensus 67 ---~~~~~l~~~lr~-------~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---GERRRLGHSLRE-------KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---HHHHHHHHHHHh-------cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112234455554 5899999776566667788888988766
No 136
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.28 E-value=0.044 Score=54.44 Aligned_cols=151 Identities=21% Similarity=0.240 Sum_probs=96.1
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHh------hcCCCCccccccChh
Q 040486 271 TPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLE------TLDGRGHMVKWAPQQ 344 (460)
Q Consensus 271 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~------~~~~~~~v~~~vp~~ 344 (460)
++..+||.+|--.....++.++.-++.+++.+-.++|.....-.-. .+|.. -.++++++.+-++-.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--------~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--------QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--------HHHHHHHHHhCCCccceeeccccchH
Confidence 4667999999888889999999999999999999999987653111 22211 112334444444432
Q ss_pred hh-----hccCCCcccccccCchhHHHHHhhCCceeccccccchhhhH-HHHhhhhcceeeeCCccCHHHHHHHHHHHhc
Q 040486 345 EV-----LAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNA-RYVSDVWKVGLHLERKLERGEVERTIRRVMT 418 (460)
Q Consensus 345 ~~-----l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na-~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~ 418 (460)
+= |..-.+.-+.+ .|+.|.++.|++|||||.+|.-.--...| ..+.. +|+|-.+.+ +.++-.+.-.++-+
T Consensus 828 eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak--~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK--NREEYVQIAVRLAT 903 (966)
T ss_pred HHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh--hHHHHHHHHHHhhc
Confidence 22 22222222444 47889999999999999999865443333 44555 688875544 56665555557777
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 040486 419 EAEGQEIRVRIMILKEKLNLC 439 (460)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~ 439 (460)
| +...+++..+++++
T Consensus 904 d------~~~L~~lr~~l~~~ 918 (966)
T KOG4626|consen 904 D------KEYLKKLRAKLRKA 918 (966)
T ss_pred C------HHHHHHHHHHHHHH
Confidence 7 34444455555543
No 137
>PRK14098 glycogen synthase; Provisional
Probab=96.27 E-value=0.041 Score=55.54 Aligned_cols=115 Identities=10% Similarity=-0.000 Sum_probs=71.5
Q ss_pred hcCCCCccccccChh---hhhccCCCccccccc---Cc-hhHHHHHhhCCceecccccc--chhhhHHHHhhhhcceeee
Q 040486 330 TLDGRGHMVKWAPQQ---EVLAHPATGGFWTHC---GW-NSTLESICEGVPMICQPCFG--DQMVNARYVSDVWKVGLHL 400 (460)
Q Consensus 330 ~~~~~~~v~~~vp~~---~~l~~~~~~~~I~Hg---G~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~ 400 (460)
+.++++.+.+.++.. .+++.+|+ ++.-+ |. .+.+||+++|+|.|+....+ |... ...++. +.|...
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~ 433 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIF 433 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEe
Confidence 345667777888764 58899999 77543 22 37889999999888866533 2111 112233 677777
Q ss_pred CCccCHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 401 ERKLERGEVERTIRRVM---TEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 401 ~~~~~~~~l~~~i~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+. -+.+.|.++|.+++ +| +. ..++++++ ++.+.-|-++.+++.++.+++
T Consensus 434 ~~-~d~~~la~ai~~~l~~~~~---~~---~~~~~~~~---~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 434 HD-YTPEALVAKLGEALALYHD---EE---RWEELVLE---AMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred CC-CCHHHHHHHHHHHHHHHcC---HH---HHHHHHHH---HhcCCCChHHHHHHHHHHHHH
Confidence 65 67899999999876 34 22 22222222 222555666677777766654
No 138
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.15 E-value=0.32 Score=46.51 Aligned_cols=106 Identities=15% Similarity=0.059 Sum_probs=73.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHH
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNV 91 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (460)
+|||+++-..+.||+.=.+++.+.|+++ +.++++++++.+.+.....+.+.-+..-.. ...+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~------~~~~---------- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDK------KKKG---------- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccc------cccc----------
Confidence 5899999988999999999999999998 599999999877766554444443321010 0000
Q ss_pred hcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEE
Q 040486 92 QCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVL 142 (460)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~ 142 (460)
.-...+..+...+.+ .++|+||.=...+-...++...++|.-.-
T Consensus 65 ~~~~~~~~l~~~lr~-------~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 65 LGLKERLALLRTLRK-------ERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred cchHHHHHHHHHhhc-------cCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 001112234455544 46999998887777778888889987773
No 139
>PHA01630 putative group 1 glycosyl transferase
Probab=95.98 E-value=0.26 Score=46.96 Aligned_cols=113 Identities=7% Similarity=0.056 Sum_probs=64.7
Q ss_pred cccChhh---hhccCCCccccc---ccC-chhHHHHHhhCCceecccccc--chhh---hHHHHhhh----------hcc
Q 040486 339 KWAPQQE---VLAHPATGGFWT---HCG-WNSTLESICEGVPMICQPCFG--DQMV---NARYVSDV----------WKV 396 (460)
Q Consensus 339 ~~vp~~~---~l~~~~~~~~I~---HgG-~gs~~eal~~GvP~v~~P~~~--DQ~~---na~~v~~~----------~G~ 396 (460)
.++|+.+ +++.+|+ +|. ..| -.++.||+++|+|+|+.-..+ |.-. |+..++.. .++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 3477544 6888998 653 233 458999999999999966533 3211 11111100 023
Q ss_pred eeeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 397 GLHLERKLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 397 g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
|..++. +.+++.+++.+++.|...+.++++.+.-+.... +.-+-++.++++.+.+++
T Consensus 274 G~~v~~--~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 274 GYFLDP--DIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhc
Confidence 443333 667788888888876211233433333333333 455677777888877765
No 140
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.91 E-value=0.074 Score=44.91 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=57.2
Q ss_pred hCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCC---CcccccccHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCe
Q 040486 40 SKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLS---ETEASTADLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPI 116 (460)
Q Consensus 40 ~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kp 116 (460)
++||+|+|++........ +|++...+...-. .......+....+... ....+.+.+|.+.. ..|
T Consensus 1 q~gh~v~fl~~~~~~~~~---~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg-----~av~~a~~~L~~~G-----f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP---PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRG-----QAVARAARQLRAQG-----FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC---CCcEEEEeCCCCCCCCCCCcccccHHHHHHHH-----HHHHHHHHHHHHcC-----CCC
Confidence 479999999954333332 4888888854111 1111122222222222 12234455666553 789
Q ss_pred eEEEecCCchhHHHHHHHc-CCceEEEec
Q 040486 117 ACLITDATWYFTQAVAESL-KLSRIVLRT 144 (460)
Q Consensus 117 D~VI~D~~~~~~~~~A~~l-giP~v~~~~ 144 (460)
|+||.....-.++.+-+.+ ++|.+.+.=
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 9999999888888999999 999998653
No 141
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.89 E-value=0.091 Score=39.45 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=53.5
Q ss_pred ccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhc-ceeeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHH-HH
Q 040486 358 HCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWK-VGLHLERKLERGEVERTIRRVMTEAEGQEIRVRIMILK-EK 435 (460)
Q Consensus 358 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~-~~ 435 (460)
+|-...+.|++++|+|+|.-+. ......+.+ | -++.. . +.+++.++|..+++| +..+++.++-+ +.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~--~-~~~el~~~i~~ll~~---~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY--N-DPEELAEKIEYLLEN---PEERRRIAKNARER 76 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE--C-CHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
Confidence 5556789999999999998443 333333333 3 33333 2 899999999999999 54444433333 33
Q ss_pred HHHHHhcCCChHHHHHHHHH
Q 040486 436 LNLCLIQGGSSYQSLESLIS 455 (460)
Q Consensus 436 ~~~~~~~~g~~~~~~~~~~~ 455 (460)
++ +.-+..+.++++++
T Consensus 77 v~----~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 77 VL----KRHTWEHRAEQILE 92 (92)
T ss_pred HH----HhCCHHHHHHHHHC
Confidence 33 56667777777653
No 142
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.88 E-value=0.11 Score=45.28 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=62.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeeEEecCCCC-CCc---ccccccHHHHH
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN----YPHFTFCSIEDSL-SET---EASTADLVALL 86 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~~~~~~-~~~---~~~~~~~~~~~ 86 (460)
||||+.-=-+. +..-+..|+++|.+.||+|+++.|...+.-... ...++......+. +.+ ..-...+.+-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 78888865444 555688899999888899999999866543221 1234443332111 111 11223333322
Q ss_pred HHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecC----------C---chhHHHHHHHcCCceEEEecc
Q 040486 87 SLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDA----------T---WYFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 145 (460)
... +..+... .+||+||+.. + +..++.-|..+|||.+.++..
T Consensus 80 ~~a-----------l~~~~~~------~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 80 KLA-----------LDGLLPD------KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp HHH-----------HHCTSTT------SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHH-----------HHhhhcc------CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 222 2222221 2599999743 1 234456677889999998876
No 143
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.73 E-value=0.68 Score=43.57 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=41.5
Q ss_pred ChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhh----hHHHHhhhhcceeeeCC
Q 040486 342 PQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMV----NARYVSDVWKVGLHLER 402 (460)
Q Consensus 342 p~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~----na~~v~~~~G~g~~~~~ 402 (460)
|+.+.|..++. ++||---.+=+.||+..|+|+.++|... +.. ..+.+++. |+-...+.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECCC
Confidence 67789999987 4555556788999999999999999876 222 23455553 77666544
No 144
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.69 E-value=0.019 Score=47.83 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhcchhHHHHHHHHhccc
Q 040486 30 PMLQLANILYSKGFSITIIHTNFNSPNP-SNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQCVVPFRNCLAKLLSNV 108 (460)
Q Consensus 30 p~l~La~~L~~~Gh~Vt~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 108 (460)
-+..|+++|.++||+|+++++....... ....++.+..++-........... .+ ..+...+ .. ..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~~~l-~~-~~- 71 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLR---FL--------RRLRRLL-AA-RR- 71 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCC---HH--------HHHHHHC-HH-CT-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHH---HH--------HHHHHHH-hh-hc-
Confidence 4678999999999999999986444322 122578888776221111000111 11 1112222 11 11
Q ss_pred ccccCCCeeEEEecCCc-hhHHHHHH-HcCCceEEEec
Q 040486 109 EEEEKEPIACLITDATW-YFTQAVAE-SLKLSRIVLRT 144 (460)
Q Consensus 109 ~~~~~~kpD~VI~D~~~-~~~~~~A~-~lgiP~v~~~~ 144 (460)
.+||+|.+.... .....+++ ..++|++....
T Consensus 72 -----~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 72 -----ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp --------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred -----cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 689999988733 22333444 88999988544
No 145
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=95.43 E-value=0.52 Score=42.67 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=64.2
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeeEEecCCC-CCCcccccccHHHH
Q 040486 11 QKKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN----YPHFTFCSIEDS-LSETEASTADLVAL 85 (460)
Q Consensus 11 ~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~~~~~-~~~~~~~~~~~~~~ 85 (460)
+..+|||++.-=-+. |.--+..|+++|.+.| +|+++.|...+.-... ...+++..+... -.....-...+.+-
T Consensus 2 ~~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDC 79 (257)
T PRK13932 2 QDKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDC 79 (257)
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHH
Confidence 345799998763322 2234778899998888 7999999765543221 123555544311 00111122333222
Q ss_pred HHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecC----------C---chhHHHHHHHcCCceEEEecc
Q 040486 86 LSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDA----------T---WYFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 145 (460)
... .+..+.. .+||+||+.. + +..|+.-|..+|||.+.++..
T Consensus 80 V~l-----------al~~~~~-------~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 80 IKV-----------ALSHILP-------EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred HHH-----------HHHhhcC-------CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 211 1233332 4799999753 1 244556677789999998753
No 146
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.16 E-value=1 Score=43.01 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=68.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeeEE-ecCCCCCCcccccccHHHHHHHHHHh
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTNFNSPNPSNYPHFTFC-SIEDSLSETEASTADLVALLSLLNVQ 92 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
||+++-..+.|++.-..++.++|+++ +.+|++++.+.+.+..+..+.+.-+ .++.. . .... +
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~--~---~~~~----~------ 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLG--H---GALE----L------ 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCc--c---cchh----h------
Confidence 68999999999999999999999997 9999999987665555544444432 22211 0 0000 0
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEE
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIV 141 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~ 141 (460)
.....++.++.+ .++|++|.-........++...|+|.-+
T Consensus 66 --~~~~~~~~~lr~-------~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 --TERRRLGRSLRE-------ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred --hHHHHHHHHHhh-------cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 011233445544 5799999877666666778888888654
No 147
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=94.98 E-value=0.71 Score=43.86 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=42.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCee
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTNFNSPNPSNYPHFT 64 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~ 64 (460)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.....+.+.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd 52 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVD 52 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCcc
Confidence 799999999999999999999999997 99999999976665554434444
No 148
>PLN02939 transferase, transferring glycosyl groups
Probab=93.86 E-value=1.4 Score=47.28 Aligned_cols=113 Identities=11% Similarity=0.103 Sum_probs=67.8
Q ss_pred CCCccccccChh---hhhccCCCccccccc---C-chhHHHHHhhCCceecccccc--chhhh--HHHH-hhhhcceeee
Q 040486 333 GRGHMVKWAPQQ---EVLAHPATGGFWTHC---G-WNSTLESICEGVPMICQPCFG--DQMVN--ARYV-SDVWKVGLHL 400 (460)
Q Consensus 333 ~~~~v~~~vp~~---~~l~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~--DQ~~n--a~~v-~~~~G~g~~~ 400 (460)
+++.+..+.+.. .+++.+|+ ||.-+ | -.+.+||+++|+|.|+....+ |--.+ ...+ ++. +-|...
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEe
Confidence 456777777764 58999999 88532 2 348999999999998866543 22111 1111 222 567666
Q ss_pred CCccCHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 401 ERKLERGEVERTIRRVMT----EAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 401 ~~~~~~~~l~~~i~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+. .+.+.|..+|.+++. | +..+++.. +. ++.+.-+-...+++.++.++
T Consensus 914 ~~-~D~eaLa~AL~rAL~~~~~d---pe~~~~L~---~~---am~~dFSWe~~A~qYeeLY~ 965 (977)
T PLN02939 914 LT-PDEQGLNSALERAFNYYKRK---PEVWKQLV---QK---DMNIDFSWDSSASQYEELYQ 965 (977)
T ss_pred cC-CCHHHHHHHHHHHHHHhccC---HHHHHHHH---HH---HHHhcCCHHHHHHHHHHHHH
Confidence 55 578889988888765 4 33333222 21 12244555566666665544
No 149
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=93.56 E-value=1.9 Score=38.93 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=60.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeeEEecCC--CCCCcccccccHHHHHHH
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN----YPHFTFCSIED--SLSETEASTADLVALLSL 88 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~ 88 (460)
||||+.-=-+ =|.--+..|+++|.+.| +|+++.|...+.-... ...+++..++. +. ....-...+.+-...
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~-~~~~v~GTPaDcv~~ 77 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGA-HIYAVDGTPTDCVIL 77 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCc-cEEEEcCcHHHHHHH
Confidence 6777654222 12334778899999988 8999999765543221 12455555431 11 011112233222222
Q ss_pred HHHhcchhHHHHHHHHhcccccccCCCeeEEEecC----------C---chhHHHHHHHcCCceEEEecc
Q 040486 89 LNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDA----------T---WYFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 145 (460)
. +..+.. .+||+||+.. + +..|..-|..+|||.+.++..
T Consensus 78 g-----------l~~l~~-------~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 78 G-----------INELMP-------EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred H-----------HHHhcc-------CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 1 223322 4799998653 1 244556677789999998753
No 150
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=93.43 E-value=2.2 Score=38.61 Aligned_cols=111 Identities=13% Similarity=0.167 Sum_probs=59.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeeEEecC-CCCC-CcccccccHHHHHHH
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN----YPHFTFCSIE-DSLS-ETEASTADLVALLSL 88 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 88 (460)
||||+.-=-+. |.--+..|+++|.+ +|+|+++.|...+.-... ...++...+. ++.. ....-...+.+-...
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~l 78 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRV 78 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHH
Confidence 67777753222 22237888999965 689999999765543221 1224433332 1000 011112222222211
Q ss_pred HHHhcchhHHHHHHHHhcccccccCCCeeEEEecC----------C---chhHHHHHHHcCCceEEEecc
Q 040486 89 LNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDA----------T---WYFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 145 (460)
-+..+.. .+||+||+.. + +..|+.-|..+|||.+.++..
T Consensus 79 -----------al~~l~~-------~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~ 130 (253)
T PRK13933 79 -----------ALDKLVP-------DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSAD 130 (253)
T ss_pred -----------HHHHhcC-------CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEec
Confidence 1223332 4799999743 2 244556677789999998753
No 151
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.25 E-value=0.65 Score=39.08 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=24.5
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 040486 24 LQGHINPMLQLANILYSKGFSITIIHTNFNSPN 56 (460)
Q Consensus 24 ~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~ 56 (460)
..|--.-+..|+++|+++||+|+++++......
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~ 43 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPI 43 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccc
Confidence 346667789999999999999999988644433
No 152
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=7.2 Score=35.89 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=53.2
Q ss_pred cccChhhhhccCCCcccccccCchhHHH-HHhhCCceeccccccchhh--hHHHHhhhhcceeeeCCccCHHHHHHHHHH
Q 040486 339 KWAPQQEVLAHPATGGFWTHCGWNSTLE-SICEGVPMICQPCFGDQMV--NARYVSDVWKVGLHLERKLERGEVERTIRR 415 (460)
Q Consensus 339 ~~vp~~~~l~~~~~~~~I~HgG~gs~~e-al~~GvP~v~~P~~~DQ~~--na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ 415 (460)
.|-...++|+++++ .|-- +||-.| ++=-|+|+|.+|-.+-|+. .|.|-.+.+|..+.+-. -.+..-..+..+
T Consensus 301 sqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q~ 375 (412)
T COG4370 301 SQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQE 375 (412)
T ss_pred eHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHHH
Confidence 33344455555555 3322 344444 4667999999999999864 56666665677777655 333444445556
Q ss_pred HhccchHHHHHHHHHH
Q 040486 416 VMTEAEGQEIRVRIMI 431 (460)
Q Consensus 416 ll~~~~~~~~~~~a~~ 431 (460)
++.| +.+-++++.
T Consensus 376 ll~d---p~r~~air~ 388 (412)
T COG4370 376 LLGD---PQRLTAIRH 388 (412)
T ss_pred HhcC---hHHHHHHHh
Confidence 9999 777776663
No 153
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=92.79 E-value=3 Score=37.80 Aligned_cols=108 Identities=14% Similarity=0.104 Sum_probs=60.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeeEEecCCCCCCcccccccHHHHHHHHH
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN----YPHFTFCSIEDSLSETEASTADLVALLSLLN 90 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
||||+.-=-+. |..-+..|+++|.+. |+|+++.|...+.-... ...+++..+.++ ...-...+.+-...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~---~~~v~GTPaDcV~~-- 73 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG---FYAVDGTPTDCVHL-- 73 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC---eEEECCcHHHHHHH--
Confidence 67777653222 334478889999988 79999999765543221 123444444211 11112222222211
Q ss_pred HhcchhHHHHHHHHhcccccccCCCeeEEEecC----------C---chhHHHHHHHcCCceEEEecc
Q 040486 91 VQCVVPFRNCLAKLLSNVEEEEKEPIACLITDA----------T---WYFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 145 (460)
-+..+.. .+||+||+.. + +..|+.-|..+|||.+.++..
T Consensus 74 ---------gl~~l~~-------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 74 ---------ALNGLLD-------PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred ---------HHHhhcc-------CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 2233332 3699998753 1 244556677789999998753
No 154
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=92.78 E-value=2.9 Score=38.07 Aligned_cols=108 Identities=7% Similarity=0.044 Sum_probs=59.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeeEEecCC-CCCCcccccccHHHHHHHH
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN----YPHFTFCSIED-SLSETEASTADLVALLSLL 89 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (460)
|||++.-=-+. |..-+..|+++|.+.| +|+++.|...+.-... ...++...+.. +. ....-...+.+-....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~-~~y~v~GTPaDCV~la 77 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGF-KVYATSGTPSDTIYLA 77 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccccCCCCcEEEEeccCCc-ceEEeCCCHHHHHHHH
Confidence 67777653333 3455788999998888 7999998765533221 12344444431 11 1111223332222111
Q ss_pred HHhcchhHHHHHHHHhcccccccCCCeeEEEecC-----------Cc---hhHHHHHHHcCCceEEEec
Q 040486 90 NVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDA-----------TW---YFTQAVAESLKLSRIVLRT 144 (460)
Q Consensus 90 ~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~-----------~~---~~~~~~A~~lgiP~v~~~~ 144 (460)
+..+ . .+||+||+.. ++ ..|..-|..+|||.+.++.
T Consensus 78 -----------l~~l-~-------~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 78 -----------TYGL-G-------RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred -----------HHhc-c-------CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 2222 1 4799998632 22 3345566778999999876
No 155
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=92.73 E-value=3.1 Score=37.69 Aligned_cols=110 Identities=7% Similarity=0.054 Sum_probs=59.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeeEEecC--CCCCCcccccccHHHHHHH
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN----YPHFTFCSIE--DSLSETEASTADLVALLSL 88 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~ 88 (460)
||||+.-=-+. |.--+.+|+++|.+ +|+|+++.|...+.-... ...++...+. ++. ....-...+.+-...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~-~~y~v~GTPaDcV~l 77 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAITIRVPLWAKKVFISERF-VAYATTGTPADCVKL 77 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCceEEEeecCCCc-cEEEECCcHHHHHHH
Confidence 67777753333 33447788888864 689999999765543221 1123333332 111 011122233222222
Q ss_pred HHHhcchhHHHHHHHHhcccccccCCCeeEEEecC----------Cc---hhHHHHHHHcCCceEEEecc
Q 040486 89 LNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDA----------TW---YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~----------~~---~~~~~~A~~lgiP~v~~~~~ 145 (460)
. +..+.. .+||+||+.. ++ ..|..-|..+|||.+.++..
T Consensus 78 a-----------l~~~~~-------~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 129 (253)
T PRK13935 78 G-----------YDVIMD-------KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSA 129 (253)
T ss_pred H-----------HHhhcc-------CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcc
Confidence 1 222322 4799999743 22 34455667789999998763
No 156
>PRK14099 glycogen synthase; Provisional
Probab=92.51 E-value=1.8 Score=43.75 Aligned_cols=110 Identities=13% Similarity=0.159 Sum_probs=59.9
Q ss_pred cccccChh-hhh-ccCCCccccc---ccCc-hhHHHHHhhCCceecccccc--chhhhHHH---HhhhhcceeeeCCccC
Q 040486 337 MVKWAPQQ-EVL-AHPATGGFWT---HCGW-NSTLESICEGVPMICQPCFG--DQMVNARY---VSDVWKVGLHLERKLE 405 (460)
Q Consensus 337 v~~~vp~~-~~l-~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~---v~~~~G~g~~~~~~~~ 405 (460)
+.++-... .++ +.+|+ ||. +=|. .+.+||+++|+|.|+....+ |--..... .+.. +.|..++. -+
T Consensus 355 ~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~-~d 430 (485)
T PRK14099 355 VIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP-VT 430 (485)
T ss_pred EeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC-CC
Confidence 44663332 233 45787 775 3444 47789999997766654322 21111100 0111 46777766 67
Q ss_pred HHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 406 RGEVERTIRR---VMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 406 ~~~l~~~i~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
.++|.++|.+ +++| +..+++ |++... .+.-|-++.+++.++.+++
T Consensus 431 ~~~La~ai~~a~~l~~d---~~~~~~---l~~~~~---~~~fSw~~~a~~y~~lY~~ 478 (485)
T PRK14099 431 ADALAAALRKTAALFAD---PVAWRR---LQRNGM---TTDVSWRNPAQHYAALYRS 478 (485)
T ss_pred HHHHHHHHHHHHHHhcC---HHHHHH---HHHHhh---hhcCChHHHHHHHHHHHHH
Confidence 8999999987 6667 433332 222222 1345555666666665543
No 157
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.50 E-value=0.85 Score=45.56 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=69.8
Q ss_pred cccChh---hhhccCCCccccc---ccCch-hHHHHHhhCCc----eeccccccchhhhHHHHhhhhcceeeeCCccCHH
Q 040486 339 KWAPQQ---EVLAHPATGGFWT---HCGWN-STLESICEGVP----MICQPCFGDQMVNARYVSDVWKVGLHLERKLERG 407 (460)
Q Consensus 339 ~~vp~~---~~l~~~~~~~~I~---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 407 (460)
+.+++. ++++.+|+ ++. +=|.| +..||+++|+| +|+--+.+- +.. ++-|..+++ .+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~----l~~gllVnP-~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQE----LNGALLVNP-YDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHH----hCCcEEECC-CCHH
Confidence 445665 46788998 775 34654 88899999999 665444332 222 233555555 6899
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 408 EVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
.++++|.++|++.. ..-+++.+++.+.+. .-+...-++.+++.|.+
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhC
Confidence 99999999998421 345566666666654 36777788888887754
No 158
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=91.28 E-value=4.6 Score=36.37 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=59.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeeEEecCCCCCCcccccccHHHHHHHHH
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSN----YPHFTFCSIEDSLSETEASTADLVALLSLLN 90 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
|||++.-=-+ =|.--+.+|+++|. .+++|++++|+.++.-... ...++...+.. ....-...+.+..
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~~~av~GTPaDCV---- 71 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---GAYAVNGTPADCV---- 71 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEecc---ceEEecCChHHHH----
Confidence 5666664222 24444677888888 9999999999866644321 11233222221 0111112222111
Q ss_pred HhcchhHHHHHHHHhcccccccCCCeeEEEecC----------C---chhHHHHHHHcCCceEEEecc
Q 040486 91 VQCVVPFRNCLAKLLSNVEEEEKEPIACLITDA----------T---WYFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 145 (460)
.--+..+.++ .+||+||+.. + +..|+.=|..+|||.|.++..
T Consensus 72 -------~lal~~l~~~------~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 72 -------ILGLNELLKE------PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred -------HHHHHHhccC------CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 1123444432 3499998643 1 244555677899999998765
No 159
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.82 E-value=0.68 Score=39.29 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=57.7
Q ss_pred cCCCccCHHHHHHHHHHH-HhC-CCeEEEEeCCCCCCCC------CCC-CCeeEEecCCCCCCcccccccHHHHHHHHHH
Q 040486 21 PLPLQGHINPMLQLANIL-YSK-GFSITIIHTNFNSPNP------SNY-PHFTFCSIEDSLSETEASTADLVALLSLLNV 91 (460)
Q Consensus 21 ~~~~~GH~~p~l~La~~L-~~~-Gh~Vt~~~~~~~~~~~------~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (460)
-.++-||..=++.|.+.+ .++ .++..+++........ ... ..-.+...|....-......+....+..
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~--- 80 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRA--- 80 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHH---
Confidence 346889999999999999 444 4555555554332221 000 0112333332110000011111111111
Q ss_pred hcchhHHHHHHHHhcccccccCCCeeEEEecCCc--hhHHHHHHHc------CCceEEEecc
Q 040486 92 QCVVPFRNCLAKLLSNVEEEEKEPIACLITDATW--YFTQAVAESL------KLSRIVLRTN 145 (460)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~--~~~~~~A~~l------giP~v~~~~~ 145 (460)
+-..+.-+.+ .|||+||++.-. .....+|..+ |.+.|.+-+.
T Consensus 81 -----~~~~~~il~r-------~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 81 -----FLQSLRILRR-------ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred -----HHHHHHHHHH-------hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 1122233333 589999999844 5557789999 9999997654
No 160
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.00 E-value=4.3 Score=37.91 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=53.5
Q ss_pred CCCccccccCh---hhhhccCCCcccccc---cCch-hHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccC
Q 040486 333 GRGHMVKWAPQ---QEVLAHPATGGFWTH---CGWN-STLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLE 405 (460)
Q Consensus 333 ~~~~v~~~vp~---~~~l~~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 405 (460)
.++.+.+++++ ..++..+++ ++.- .|.| ++.||+++|+|+|. .+.......+.+. +.|. +.....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~----~~~~~~~e~~~~~-~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIA----SDVGGIPEVVEDG-ETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEE----CCCCChHHHhcCC-CceE-ecCCCC
Confidence 44566788882 346777777 6665 3554 46999999999966 4444444555552 3466 433236
Q ss_pred HHHHHHHHHHHhcc
Q 040486 406 RGEVERTIRRVMTE 419 (460)
Q Consensus 406 ~~~l~~~i~~ll~~ 419 (460)
.+.+..++..++++
T Consensus 329 ~~~~~~~i~~~~~~ 342 (381)
T COG0438 329 VEELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999998
No 161
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=87.83 E-value=2.2 Score=43.39 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=47.3
Q ss_pred ChhhhhccCCCccccc---ccCc-hhHHHHHhhCCceecccccc-chhhhHHHHhhhhcceeeeCC------ccCHHHHH
Q 040486 342 PQQEVLAHPATGGFWT---HCGW-NSTLESICEGVPMICQPCFG-DQMVNARYVSDVWKVGLHLER------KLERGEVE 410 (460)
Q Consensus 342 p~~~~l~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G~g~~~~~------~~~~~~l~ 410 (460)
+..++++.|++ +|. +=|+ -++.||+++|+|+|.....+ ..... ..+.+....|+.+.. ..+.+.|.
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 35677888998 665 4454 49999999999999966532 11111 122221014666642 34567888
Q ss_pred HHHHHHhcc
Q 040486 411 RTIRRVMTE 419 (460)
Q Consensus 411 ~~i~~ll~~ 419 (460)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 888888865
No 162
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=87.46 E-value=1 Score=35.55 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=26.3
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQG---HINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~G---H~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|||+|+.-|-.+ .-...+.++.+-.+|||+|.++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 789888765443 3456899999999999999999885
No 163
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=87.35 E-value=4.8 Score=37.34 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=79.6
Q ss_pred EEEEccccccCCHHHHHHHHHHHHc---CCCCEEEEEcCCccCCCccCCCCchhHHhhcC-CCCcc-ccccCh---hhhh
Q 040486 276 IYVSFGSIAAINETEFLEVAWGLAN---SKVPFLWVVRPGLVRGAEWIEPLPQGFLETLD-GRGHM-VKWAPQ---QEVL 347 (460)
Q Consensus 276 v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~v-~~~vp~---~~~l 347 (460)
+-|=.|-.+..+... -++++++.+ .+.+++.-++.+..+. +....+-..-.+..+ +++.+ .+++|- .++|
T Consensus 147 ~tIlvGNSgd~SN~H-ie~L~~l~~~~~~~v~ii~PlsYp~gn~-~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL 224 (322)
T PRK02797 147 MTILVGNSGDRSNRH-IEALRALHQQFGDNVKIIVPMGYPANNQ-AYIEEVRQAGLALFGAENFQILTEKLPFDDYLALL 224 (322)
T ss_pred eEEEEeCCCCCcccH-HHHHHHHHHHhCCCeEEEEECCcCCCCH-HHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHH
Confidence 333455555433333 344555543 2457777777642111 001111111122233 45554 477774 5799
Q ss_pred ccCCCcccccc--cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhc
Q 040486 348 AHPATGGFWTH--CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMT 418 (460)
Q Consensus 348 ~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~ 418 (460)
+.||++.|+|+ =|.||+.-.+..|+|+++- -+-+.|....+. |+-+-.+. .++...+.++=+++..
T Consensus 225 ~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e~--gv~Vlf~~d~L~~~~v~e~~rql~~ 293 (322)
T PRK02797 225 RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTEQ--GLPVLFTGDDLDEDIVREAQRQLAS 293 (322)
T ss_pred HhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHhC--CCeEEecCCcccHHHHHHHHHHHHh
Confidence 99999888886 5899999999999999883 344445544443 77765555 7888888877665543
No 164
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=86.17 E-value=2.4 Score=42.60 Aligned_cols=103 Identities=19% Similarity=0.180 Sum_probs=62.0
Q ss_pred ccccChhh---hhccCCCccccc---ccCch-hHHHHHhhCCc----eeccccccchhhhHHHHhhhhcceeeeCCccCH
Q 040486 338 VKWAPQQE---VLAHPATGGFWT---HCGWN-STLESICEGVP----MICQPCFGDQMVNARYVSDVWKVGLHLERKLER 406 (460)
Q Consensus 338 ~~~vp~~~---~l~~~~~~~~I~---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 406 (460)
.+++++.+ +++.+|+ +|. +-|.| ++.||+++|+| +|+--..+ .+.. . .-|..+++ .+.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~~---~-~~g~lv~p-~d~ 414 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAEE---L-SGALLVNP-YDI 414 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chhh---c-CCCEEECC-CCH
Confidence 36777654 6888998 663 44654 77999999999 54432222 1111 1 23555555 688
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 407 GEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 407 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
++++++|.+++++.. ...+++.++..+.+ ..-+...-++++++.|
T Consensus 415 ~~la~ai~~~l~~~~-~e~~~~~~~~~~~v-----~~~~~~~w~~~~l~~l 459 (460)
T cd03788 415 DEVADAIHRALTMPL-EERRERHRKLREYV-----RTHDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHH-----HhCCHHHHHHHHHHhh
Confidence 999999999998621 12222333333333 2456777777777665
No 165
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=85.38 E-value=1.2 Score=35.84 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=31.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
|||++...|+.+-.. ...+.++|.++|++|+++.++..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcH
Confidence 689988888877777 99999999999999999988743
No 166
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=84.78 E-value=30 Score=31.34 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=55.0
Q ss_pred EEEEEcccccc--CCHHHH----HHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCC-----Ccc-----c
Q 040486 275 VIYVSFGSIAA--INETEF----LEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGR-----GHM-----V 338 (460)
Q Consensus 275 ~v~vs~Gs~~~--~~~~~~----~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~-----~~v-----~ 338 (460)
|..+-.|+... ..++.. ..+...+++.|.+++.++... -|+.+....+.| +.+ .
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR----------Tp~~~~s~l~~~l~s~~~i~w~~~d~ 233 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR----------TPDTVKSILKNNLNSSPGIVWNNEDT 233 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC----------CcHHHHHHHHhccccCceeEeCCCCC
Confidence 44444555444 223332 335566777788888887643 334333322322 222 2
Q ss_pred cccChhhhhccCCCccccccc-CchhHHHHHhhCCceec
Q 040486 339 KWAPQQEVLAHPATGGFWTHC-GWNSTLESICEGVPMIC 376 (460)
Q Consensus 339 ~~vp~~~~l~~~~~~~~I~Hg-G~gs~~eal~~GvP~v~ 376 (460)
++=|+.+.|+.++. +|.-. ..+-..||++.|+|+.+
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~ 270 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFI 270 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEE
Confidence 45589999999987 55544 46788999999999966
No 167
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=84.56 E-value=2.4 Score=43.05 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=56.2
Q ss_pred CCCccccccC--h-hhhhccCCCccccccc---CchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCH
Q 040486 333 GRGHMVKWAP--Q-QEVLAHPATGGFWTHC---GWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLER 406 (460)
Q Consensus 333 ~~~~v~~~vp--~-~~~l~~~~~~~~I~Hg---G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 406 (460)
.++.+.++.. + ..++..+.+ +|.=+ |.+|..||+.+|+|+| .......|++. .=|.-+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe---CCH
Confidence 3556678777 3 367778888 77655 6789999999999999 44445667763 666665 367
Q ss_pred HHHHHHHHHHhcc
Q 040486 407 GEVERTIRRVMTE 419 (460)
Q Consensus 407 ~~l~~~i~~ll~~ 419 (460)
.+|.+++..+|.+
T Consensus 476 ~~l~~al~~~L~~ 488 (519)
T TIGR03713 476 SELLKALDYYLDN 488 (519)
T ss_pred HHHHHHHHHHHhC
Confidence 8999999999998
No 168
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.67 E-value=12 Score=34.10 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=23.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|||+++. +.|. ...|++.|.++||+|+..+..
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t 32 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTT 32 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEcc
Confidence 5777664 3333 678999999999999986654
No 169
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=83.65 E-value=2.6 Score=34.32 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=38.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
+++.+|++.+.++-+|-.-..-++..|..+|++|+++.....
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp 42 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTS 42 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 467899999999999999999999999999999999988643
No 170
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=82.97 E-value=7 Score=30.71 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=32.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.|+++.+.+..-|-.-...++..|.++||+|.++...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 3788999999999999999999999999999998553
No 171
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=82.79 E-value=2.3 Score=42.26 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=58.3
Q ss_pred hHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Q 040486 363 STLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLI 441 (460)
Q Consensus 363 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 441 (460)
++.||+++|+|++. .++..-+..+++ .-.|..+++ .-....+++++.++.+| +.++.+..+=+.+-.+
T Consensus 381 v~IEAMa~glPvvA----t~~GGP~EiV~~-~~tG~l~dp~~e~~~~~a~~~~kl~~~---p~l~~~~~~~G~~rV~--- 449 (495)
T KOG0853|consen 381 VPIEAMACGLPVVA----TNNGGPAEIVVH-GVTGLLIDPGQEAVAELADALLKLRRD---PELWARMGKNGLKRVK--- 449 (495)
T ss_pred eeHHHHhcCCCEEE----ecCCCceEEEEc-CCcceeeCCchHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH---
Confidence 78999999999988 466666777787 377888887 33444799999999999 8887666554433332
Q ss_pred cCCChHHHHHHHHHHH
Q 040486 442 QGGSSYQSLESLISYI 457 (460)
Q Consensus 442 ~~g~~~~~~~~~~~~~ 457 (460)
+--+-..+.+++.+.+
T Consensus 450 e~fs~~~~~~ri~~~~ 465 (495)
T KOG0853|consen 450 EMFSWQHYSERIASVL 465 (495)
T ss_pred HHHhHHHHHHHHHHHh
Confidence 2233355556655544
No 172
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=81.96 E-value=17 Score=30.02 Aligned_cols=136 Identities=16% Similarity=0.190 Sum_probs=71.6
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcc
Q 040486 275 VIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGG 354 (460)
Q Consensus 275 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~ 354 (460)
.|-|-+||.+ .....+++...|+..+..+-..+.. ....|+.+. .++...+- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~s--------aHR~p~~l~----------~~~~~~~~-~~~~v-- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVAS--------AHRTPERLL----------EFVKEYEA-RGADV-- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE----------TTTSHHHHH----------HHHHHTTT-TTESE--
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEe--------ccCCHHHHH----------HHHHHhcc-CCCEE--
Confidence 4666678766 4577788888998888655444433 223555442 12111111 23455
Q ss_pred cccccCch----hHHHHHhhCCceeccccccchhh----hHHHHhhhhcceeeeCC---ccCHHHHHHHHHHHhccchHH
Q 040486 355 FWTHCGWN----STLESICEGVPMICQPCFGDQMV----NARYVSDVWKVGLHLER---KLERGEVERTIRRVMTEAEGQ 423 (460)
Q Consensus 355 ~I~HgG~g----s~~eal~~GvP~v~~P~~~DQ~~----na~~v~~~~G~g~~~~~---~~~~~~l~~~i~~ll~~~~~~ 423 (460)
||.=+|.. ++..++. -.|+|.+|....+.. ....++---|+++..-. ..+...++..|-. +.| +
T Consensus 59 iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa-~~d---~ 133 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILA-LKD---P 133 (150)
T ss_dssp EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHH-TT----H
T ss_pred EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHh-cCC---H
Confidence 88877743 3444443 789999999876442 22333321155443322 3444445444433 356 7
Q ss_pred HHHHHHHHHHHHHHH
Q 040486 424 EIRVRIMILKEKLNL 438 (460)
Q Consensus 424 ~~~~~a~~~~~~~~~ 438 (460)
.++++.+..++++++
T Consensus 134 ~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 134 ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 899999988888774
No 173
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=81.87 E-value=4.9 Score=39.90 Aligned_cols=131 Identities=8% Similarity=0.062 Sum_probs=79.1
Q ss_pred CCeEEEEEccccccCCHHHHHHHHHHHHcCC-CCEEEEEcCCccCCCccCCCCchhHH--hhcCCCCccc-cccC-h-hh
Q 040486 272 PKSVIYVSFGSIAAINETEFLEVAWGLANSK-VPFLWVVRPGLVRGAEWIEPLPQGFL--ETLDGRGHMV-KWAP-Q-QE 345 (460)
Q Consensus 272 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~~--~~~~~~~~v~-~~vp-~-~~ 345 (460)
...++++| ....+..+....++++ ..+=+..... ..+.+. ++. +|+++. ++.+ . .+
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----------~s~kL~~L~~y-~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----------MSSKLMSLDKY-DNVKLYPNITTQKIQE 343 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----------ccHHHHHHHhc-CCcEEECCcChHHHHH
Confidence 44566666 2556666666666654 4443322211 112221 222 444554 6777 3 47
Q ss_pred hhccCCCcccccccC--chhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchHH
Q 040486 346 VLAHPATGGFWTHCG--WNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEGQ 423 (460)
Q Consensus 346 ~l~~~~~~~~I~HgG--~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~ 423 (460)
++..|++-+-|+||+ ..++.||+.+|+|++..=...... ..+.+ |-... .-+.+++.++|.++|++ +
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~-~~~~~~m~~~i~~lL~d---~ 412 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFE-HNEVDQLISKLKDLLND---P 412 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----Cceec-CCCHHHHHHHHHHHhcC---H
Confidence 999999999999987 479999999999999854432111 11221 22222 25689999999999999 6
Q ss_pred H-HHHHHHH
Q 040486 424 E-IRVRIMI 431 (460)
Q Consensus 424 ~-~~~~a~~ 431 (460)
. ++++..+
T Consensus 413 ~~~~~~~~~ 421 (438)
T TIGR02919 413 NQFRELLEQ 421 (438)
T ss_pred HHHHHHHHH
Confidence 4 4444433
No 174
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=81.51 E-value=6.3 Score=42.44 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=62.5
Q ss_pred hhhccCCCcccccc---cCch-hHHHHHhhCCc---eeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHh
Q 040486 345 EVLAHPATGGFWTH---CGWN-STLESICEGVP---MICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVM 417 (460)
Q Consensus 345 ~~l~~~~~~~~I~H---gG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll 417 (460)
++++.+|+ ||.- -|+| +..|++++|+| ++++. |--..+..+ . .-|+.+.+ .+.+.++++|.++|
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~~l-~--~~allVnP-~D~~~lA~AI~~aL 441 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQSL-G--AGALLVNP-WNITEVSSAIKEAL 441 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchhhh-c--CCeEEECC-CCHHHHHHHHHHHH
Confidence 57888998 7754 4876 77899999999 33333 222222211 1 24677776 78999999999999
Q ss_pred c-cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 418 T-EAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 418 ~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+ +. ..-+++.+++.+.+. .-+...-++.+++.++
T Consensus 442 ~m~~--~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 442 NMSD--EERETRHRHNFQYVK-----THSAQKWADDFMSELN 476 (797)
T ss_pred hCCH--HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHH
Confidence 8 41 233445555555554 3445566666666554
No 175
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=80.76 E-value=28 Score=31.82 Aligned_cols=109 Identities=10% Similarity=0.044 Sum_probs=57.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC---CCeEEEEeCCCCCCCCC----CCCCeeEEecCCCCCCcccccccHHHHHH
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSK---GFSITIIHTNFNSPNPS----NYPHFTFCSIEDSLSETEASTADLVALLS 87 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~---Gh~Vt~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (460)
||||+.-=-+. |.--+..|+++|.+. |++|+++.|+..+.-.. -...++...+.++ ...-...+.+-..
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~---~yav~GTPaDCV~ 76 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPR---RFAAEGSPADCVL 76 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCC---eEEEcCchHHHHH
Confidence 56666542111 223356677777663 47999999986554322 1124555554321 1122233322222
Q ss_pred HHHHhcchhHHHHHHHHhcccccccCCCeeEEEecC----------Cc---hhHHHHHHHcCCceEEEec
Q 040486 88 LLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDA----------TW---YFTQAVAESLKLSRIVLRT 144 (460)
Q Consensus 88 ~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~----------~~---~~~~~~A~~lgiP~v~~~~ 144 (460)
.. +..+.+. .+||+||+.. ++ ..|+.-|..+|||.+.++.
T Consensus 77 la-----------l~~~~~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 77 AA-----------LYDVMKD------APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HH-----------HHHhcCC------CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 21 2222210 2699999743 22 3445566778999999875
No 176
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.19 E-value=13 Score=31.00 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=44.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEE-EEeCCCCCCCCCCCCCeeEEecCC
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSIT-IIHTNFNSPNPSNYPHFTFCSIED 70 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt-~~~~~~~~~~~~~~~g~~~~~~~~ 70 (460)
..+|||++.-.|+.|-..-.+.+++.|.+.|+.|- |++++ -.+--.. .||+.+.+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E-VR~gGkR-~GF~Ivdl~t 60 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE-VREGGKR-IGFKIVDLAT 60 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee-eecCCeE-eeeEEEEccC
Confidence 35799999999999999999999999999999998 44443 2222222 4788887763
No 177
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=77.84 E-value=23 Score=35.10 Aligned_cols=93 Identities=10% Similarity=0.078 Sum_probs=54.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--CCCCeeEEecCCCCCCcccccccHHHHHHHHHHh
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPS--NYPHFTFCSIEDSLSETEASTADLVALLSLLNVQ 92 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
.|+.++..+.. .+.+++.|.+-|-+|..+++........ .+..+ +.+.......
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~------~~~~~~v~~~------------- 341 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRWL------EMLGVEVKYR------------- 341 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHHH------HhcCCCceec-------------
Confidence 47777776555 8899999999999999997763211111 00000 0000000000
Q ss_pred cchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEe
Q 040486 93 CVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLR 143 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~ 143 (460)
..+.+.++.+.+ .+||++|.... +..+|+++|||++.+.
T Consensus 342 --~dl~~~~~~l~~-------~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 --ASLEDDMEAVLE-------FEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred --cCHHHHHHHHhh-------CCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 122222344432 48999999843 5568999999999964
No 178
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=77.63 E-value=2.8 Score=35.59 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=24.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|||+++. +.|++- -.|+++..+|||+||-++-.
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 7888774 334433 35789999999999998775
No 179
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=77.41 E-value=3.6 Score=35.68 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
+.+||++.-.|+.|=+.-...+++.|.++||+|.++.++.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 4578888877776666557999999999999999999863
No 180
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=76.64 E-value=4.1 Score=32.12 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=32.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
||++.+.++-.|.....-++..|..+|++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 588889999999999999999999999999888754
No 181
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=76.58 E-value=16 Score=34.52 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=81.7
Q ss_pred EEEEccccccCCHHHHHHHHHHHHc---CCCCEEEEEcCCccCCCccCCCCchhHHhhcC-CCCcc-ccccCh---hhhh
Q 040486 276 IYVSFGSIAAINETEFLEVAWGLAN---SKVPFLWVVRPGLVRGAEWIEPLPQGFLETLD-GRGHM-VKWAPQ---QEVL 347 (460)
Q Consensus 276 v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~v-~~~vp~---~~~l 347 (460)
+.|=.|-.+..+... -++++++.+ .+.+++.-++.+..+. +....+-..-.+..+ +++.+ .+++|- .++|
T Consensus 186 ltILvGNSgd~sNnH-ieaL~~L~~~~~~~~kIivPLsYg~~n~-~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 186 LTILVGNSGDPSNNH-IEALEALKQQFGDDVKIIVPLSYGANNQ-AYIQQVIQAGKELFGAENFQILTEFMPFDEYLALL 263 (360)
T ss_pred eEEEEcCCCCCCccH-HHHHHHHHHhcCCCeEEEEECCCCCchH-HHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHH
Confidence 444456555433333 233444443 3467777776653110 001111111112223 35554 478885 5699
Q ss_pred ccCCCcccccc--cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhc
Q 040486 348 AHPATGGFWTH--CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMT 418 (460)
Q Consensus 348 ~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~ 418 (460)
+.|+++.|.|. =|.|++.-.+..|+|+++ .-+-+.+ +-+.+ .|+-+--.. +++...|+++=+++.+
T Consensus 264 ~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L---~~~np~~-~~l~~-~~ipVlf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICLLLQLGKKVFL---SRDNPFW-QDLKE-QGIPVLFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred HhCCEEEEeechhhhHhHHHHHHHcCCeEEE---ecCChHH-HHHHh-CCCeEEeccccCCHHHHHHHHHHHhh
Confidence 99999887775 589999999999999987 2233333 44555 377766655 8999999999988865
No 182
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=76.04 E-value=4.5 Score=34.85 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEec
Q 040486 31 MLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSI 68 (460)
Q Consensus 31 ~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~ 68 (460)
-..||+++..+|++|+++..+...+. . .+++.+.+
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~~~~~--p-~~~~~i~v 66 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPSSLPP--P-PGVKVIRV 66 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TTS-------TTEEEEE-
T ss_pred HHHHHHHHHHCCCEEEEEecCccccc--c-ccceEEEe
Confidence 57899999999999999998732221 1 36666655
No 183
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=74.14 E-value=9.4 Score=27.60 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=32.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
..-++++..|...|...+-.+|+.|++.|..|...-.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4778888889999999999999999999999987643
No 184
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=73.89 E-value=15 Score=33.69 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=33.1
Q ss_pred ccccccChhhhhccCCCcccccccCchhHHHHHhhCCceecccc
Q 040486 336 HMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPC 379 (460)
Q Consensus 336 ~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 379 (460)
.+.+-++-.+++.+++. +||-.+. +-.||+.+|+|++++..
T Consensus 186 ~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 186 IIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 34566788899999998 8877664 77899999999999543
No 185
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=73.75 E-value=4.3 Score=39.35 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=62.3
Q ss_pred CCccc-cccChhhhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeC----C--ccCH
Q 040486 334 RGHMV-KWAPQQEVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLE----R--KLER 406 (460)
Q Consensus 334 ~~~v~-~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~----~--~~~~ 406 (460)
+++.. +..+-.++|..+|+ +||--.. .+.|.+..++|++....-.|..... . |.-.... . -.+.
T Consensus 253 ~i~~~~~~~~~~~ll~~aDi--LITDySS-i~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~~ 323 (369)
T PF04464_consen 253 NIIFVSDNEDIYDLLAAADI--LITDYSS-IIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYNF 323 (369)
T ss_dssp TEEE-TT-S-HHHHHHT-SE--EEESS-T-HHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EESSH
T ss_pred cEEECCCCCCHHHHHHhcCE--EEEechh-HHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeCCH
Confidence 33443 44567799999999 9998744 8899999999999866555544221 1 3332221 1 3578
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 040486 407 GEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESL 453 (460)
Q Consensus 407 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~ 453 (460)
++|.++|..++++. ..++++.+++.+++-. ...|.++++.++.+
T Consensus 324 ~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 324 EELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNYI 367 (369)
T ss_dssp HHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHHH
T ss_pred HHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHHH
Confidence 99999999988762 3456666677777642 22444555444444
No 186
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=73.40 E-value=88 Score=29.94 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=50.2
Q ss_pred CHHHHHHHH-HHHHcC-CCCEEEEEcCCccCCCccCCCCchhHHh--hcCCCCccccccChh---hhhccCCCccccccc
Q 040486 287 NETEFLEVA-WGLANS-KVPFLWVVRPGLVRGAEWIEPLPQGFLE--TLDGRGHMVKWAPQQ---EVLAHPATGGFWTHC 359 (460)
Q Consensus 287 ~~~~~~~~~-~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~--~~~~~~~v~~~vp~~---~~l~~~~~~~~I~Hg 359 (460)
..+.+.+++ ..+.+. ..+|++.-.++. . ..-+..+| .+.+++.+.+-+|++ ++|...++ |++-+
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGPk--~-----i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntS 279 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGPK--R-----IDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTS 279 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCcc--c-----chHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccH
Confidence 445555544 445544 466665443331 1 11123333 334777788999986 57888888 88654
Q ss_pred C----chhHHHHHhhCCceecc
Q 040486 360 G----WNSTLESICEGVPMICQ 377 (460)
Q Consensus 360 G----~gs~~eal~~GvP~v~~ 377 (460)
= .-++.||+.+|.|+|..
T Consensus 280 lTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 280 LTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHHHhCCCEEEEe
Confidence 3 23688999999999863
No 187
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=72.83 E-value=32 Score=33.96 Aligned_cols=28 Identities=7% Similarity=-0.097 Sum_probs=23.0
Q ss_pred CCeeEEEecCCchhHHHHHHHcCCceEEEec
Q 040486 114 EPIACLITDATWYFTQAVAESLKLSRIVLRT 144 (460)
Q Consensus 114 ~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~ 144 (460)
.+||++|... .+..+|+++|||++.+..
T Consensus 349 ~~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 349 YRPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cCCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 4799999883 466799999999999653
No 188
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=71.54 E-value=42 Score=31.80 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=33.0
Q ss_pred CcEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 040486 14 GRRLILFP-LPLQGHINPMLQLANILYSKGFSITIIHTNFNSP 55 (460)
Q Consensus 14 ~~~vl~~~-~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~ 55 (460)
++||+|++ =|+-|-..-..++|-.|++.|..|.+++++....
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 36777775 4566888888889999999999988898875543
No 189
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=71.40 E-value=44 Score=28.89 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=61.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC--C---CCC-CCCCCCCeeEEecCCCCCCcccccccHHHHH
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN--F---NSP-NPSNYPHFTFCSIEDSLSETEASTADLVALL 86 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~--~---~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
..-.|.+++..+.|-....+.+|-..+.+|+.|.++=-- . ... .....+++++.....++..... +..+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~---~~~e~- 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQ---DRERD- 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCC---CcHHH-
Confidence 457889999999999999999999999999999987221 1 111 1222357888888765332211 11111
Q ss_pred HHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCc
Q 040486 87 SLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATW 125 (460)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~ 125 (460)
...+...+....+.+.. .+.|+||.|-..
T Consensus 97 ---~~~~~~~~~~a~~~l~~-------~~ydlvVLDEi~ 125 (191)
T PRK05986 97 ---IAAAREGWEEAKRMLAD-------ESYDLVVLDELT 125 (191)
T ss_pred ---HHHHHHHHHHHHHHHhC-------CCCCEEEEehhh
Confidence 12222334444444443 479999999865
No 190
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=71.17 E-value=34 Score=28.64 Aligned_cols=97 Identities=11% Similarity=0.140 Sum_probs=56.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE---eCC--CCCC-CCCCCCCeeEEecCCCCCCcccccccHHHHHHHH
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITII---HTN--FNSP-NPSNYPHFTFCSIEDSLSETEASTADLVALLSLL 89 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~---~~~--~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (460)
-|.+++..+.|-....+.+|-..+.+|+.|.|+ -.. .... .....+++.+.....+..... .+..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~---~~~~~~~--- 77 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTT---ENDEEDI--- 77 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCC---CChHHHH---
Confidence 467788889999999999999999999999994 332 1111 122335788888765433211 1111111
Q ss_pred HHhcchhHHHHHHHHhcccccccCCCeeEEEecCCch
Q 040486 90 NVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWY 126 (460)
Q Consensus 90 ~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~ 126 (460)
......+...-+.+.. .++|+||.|....
T Consensus 78 -~~a~~~~~~a~~~~~~-------~~~dLlVLDEi~~ 106 (159)
T cd00561 78 -AAAAEGWAFAKEAIAS-------GEYDLVILDEINY 106 (159)
T ss_pred -HHHHHHHHHHHHHHhc-------CCCCEEEEechHh
Confidence 1122333333333332 4699999998653
No 191
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=69.35 E-value=13 Score=33.26 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=21.8
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 19 LFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 19 ~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+++..+.|-+ -..||++|.++||+|++++..
T Consensus 19 ~itN~SSG~i--G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQL--GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchHH--HHHHHHHHHhCCCEEEEEECc
Confidence 3444444433 467889999999999999753
No 192
>PRK14099 glycogen synthase; Provisional
Probab=69.19 E-value=8.7 Score=38.86 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=30.4
Q ss_pred CCCcEEEEEcC--------CCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 12 KKGRRLILFPL--------PLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 12 ~~~~~vl~~~~--------~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
|++|||++++. |+.|++ .-+|.++|+++||+|.++.|-+.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~g~~v~v~~P~y~ 48 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADV--AGALPAALKAHGVEVRTLVPGYP 48 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHCCCcEEEEeCCCc
Confidence 46799999863 333444 56778999999999999999653
No 193
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.12 E-value=32 Score=30.65 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=59.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcc---------cccccH--
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETE---------ASTADL-- 82 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~-- 82 (460)
...+.|+|+.-. .-..++.++++||+|.+-.|=.........+| .+..+...+. ....+.
T Consensus 54 eVTlA~~P~~~~-----~~~~~~~A~~~G~evlih~PmeP~~~~~~e~g----tL~~~~s~~e~~~rl~~a~~~v~~~~G 124 (250)
T COG2861 54 EVTLAFAPFAPH-----AREWAQKARNAGHEVLIHMPMEPFSYPKIEPG----TLRPGMSAEEILRRLRKAMNKVPDAVG 124 (250)
T ss_pred cceEEecCCCch-----hHHHHHHHHhcCCEEEEeccCCcccCCCCCCC----CcccCCCHHHHHHHHHHHHhhCcccee
Confidence 355566665422 34678888899999999877422222111122 1211111111 000011
Q ss_pred -HHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCch---hHHHHHHHcCCceEE
Q 040486 83 -VALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWY---FTQAVAESLKLSRIV 141 (460)
Q Consensus 83 -~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~---~~~~~A~~lgiP~v~ 141 (460)
...+......-...++.+++.|. +-++.+.|..+. -+..+|...|||++.
T Consensus 125 lnNhmGs~~tsn~~aM~~~m~~Lk---------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 125 LNNHMGSRFTSNEDAMEKLMEALK---------ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred ehhhhhhhhcCcHHHHHHHHHHHH---------HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 11223333333445555667775 469999998763 346789999999988
No 194
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=68.48 E-value=7 Score=33.64 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=32.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
.||++.-.|+.|-+.-.+.+.++|.++|++|+++.++.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 46888877888888888899999999999999998863
No 195
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=68.34 E-value=58 Score=32.40 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCeeEEEecCCchhHHHHHHHcCCceEEEe
Q 040486 114 EPIACLITDATWYFTQAVAESLKLSRIVLR 143 (460)
Q Consensus 114 ~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~ 143 (460)
.+||++|.... ...+|+++|||++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 47999999863 5688999999998865
No 196
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=68.26 E-value=7.4 Score=33.44 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
++||++...|+.|=+. ...+.+.|.++|++|.++.++..
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhH
Confidence 4688888877777665 79999999999999999988643
No 197
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=68.20 E-value=33 Score=29.12 Aligned_cols=97 Identities=9% Similarity=0.046 Sum_probs=58.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE---eCC--CCCC-CCCCCCCeeEEecCCCCCCcccccccHHHHHH
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITII---HTN--FNSP-NPSNYPHFTFCSIEDSLSETEASTADLVALLS 87 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~---~~~--~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (460)
+--|.+++..+.|-....+.+|-..+.+|+.|.++ =.. +... ..... ++++.....++........ +..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~-~~~~~~~g~g~~~~~~~~~---~~~- 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH-GVEFQVMGTGFTWETQNRE---ADT- 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc-CcEEEECCCCCeecCCCcH---HHH-
Confidence 35677788889999999999999999999999765 221 1111 12232 7888888765432221111 111
Q ss_pred HHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCc
Q 040486 88 LLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATW 125 (460)
Q Consensus 88 ~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~ 125 (460)
..+...+...-+.+.. .+.|+||.|...
T Consensus 80 ---~~~~~~~~~a~~~l~~-------~~~DlvVLDEi~ 107 (173)
T TIGR00708 80 ---AIAKAAWQHAKEMLAD-------PELDLVLLDELT 107 (173)
T ss_pred ---HHHHHHHHHHHHHHhc-------CCCCEEEehhhH
Confidence 1122333334444443 479999999855
No 198
>PRK05920 aromatic acid decarboxylase; Validated
Probab=67.43 E-value=8.1 Score=33.81 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
++||++.-.|+.+= .-.+.+.+.|.+.||+|.++.++.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChh
Confidence 57888877776655 689999999999999999999864
No 199
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=67.00 E-value=8.3 Score=33.17 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYS-KGFSITIIHTNF 52 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~-~Gh~Vt~~~~~~ 52 (460)
++||++.-.|+.| ..-...+++.|.+ .||+|.++.++.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 4688888878777 6669999999999 599999999974
No 200
>PRK09620 hypothetical protein; Provisional
Probab=66.92 E-value=30 Score=30.98 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCccCHH------------HHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHIN------------PMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~------------p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.+||++...|+.=.+. --..||++|.++|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4566666555433322 2478899999999999999764
No 201
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=66.06 E-value=16 Score=36.54 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=39.9
Q ss_pred CCcEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEec
Q 040486 13 KGRRLILFPLPLQGHINP------------MLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSI 68 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p------------~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~ 68 (460)
+.+||++...|++=.+.| -..||+++..+|++||+++.+.... ...+++++.+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---~p~~v~~i~V 319 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---DPQGVKVIHV 319 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---CCCCceEEEe
Confidence 568999988888777766 4789999999999999999764322 1136666655
No 202
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=62.78 E-value=20 Score=38.36 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=64.7
Q ss_pred ccccChh---hhhccCCCcccccc---cCc-hhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHH
Q 040486 338 VKWAPQQ---EVLAHPATGGFWTH---CGW-NSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVE 410 (460)
Q Consensus 338 ~~~vp~~---~~l~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~ 410 (460)
.+++++. ++++.+|+ |+.- -|. .++.|++++|+|-..+|+..+--.-+. + +.-|+.+++ .+.+.++
T Consensus 347 ~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-~d~~~la 419 (726)
T PRK14501 347 YRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-NDIEGIA 419 (726)
T ss_pred eCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-CCHHHHH
Confidence 3667765 47788888 6654 355 488999999775322333222111111 2 223566666 6899999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 411 RTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 411 ~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
++|.++|++.. +..+++.+++.+.++ .-+..+-++++++.+++
T Consensus 420 ~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 420 AAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Confidence 99999998411 234444444544443 34566667777666553
No 203
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=62.49 E-value=32 Score=34.17 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhc
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQC 93 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
..||+++..+ .-.+.+++.|.+.|-+|..+......+...+ .+++..-....... ...
T Consensus 299 gk~v~i~~~~-----~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~v~ 356 (428)
T cd01965 299 GKRVAIAGDP-----DLLLGLSRFLLEMGAEPVAAVTGTDNPPFEK--RMELLASLEGIPAE---------------VVF 356 (428)
T ss_pred CCEEEEEcCh-----HHHHHHHHHHHHcCCcceEEEEcCCCchhHH--HHHHhhhhcCCCce---------------EEE
Confidence 5788777432 3467889999999999987766432222110 01000000000000 001
Q ss_pred chhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEec
Q 040486 94 VVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRT 144 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~ 144 (460)
...+.++.+.+.+ .+||+||.+.. ...+|+++|+|++.++.
T Consensus 357 ~~d~~el~~~i~~-------~~pdliig~~~---~~~~a~~~~ip~i~~~~ 397 (428)
T cd01965 357 VGDLWDLESLAKE-------EPVDLLIGNSH---GRYLARDLGIPLVRVGF 397 (428)
T ss_pred CCCHHHHHHHhhc-------cCCCEEEECch---hHHHHHhcCCCEEEecC
Confidence 1122233333332 47999999963 45788999999998543
No 204
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=61.04 E-value=15 Score=29.90 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
+.+.||++.+.+.-||=.-.--+++.|++.|.+|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 468999999999999999999999999999999988654
No 205
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=60.86 E-value=31 Score=25.47 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhcchhHHHHHHHHhccccc
Q 040486 31 MLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQCVVPFRNCLAKLLSNVEE 110 (460)
Q Consensus 31 ~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 110 (460)
++++++.|.+.|+++. ++.. ......+ .|++....-.....+ . ...++.+..
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~g-Ta~~L~~-~Gi~~~~~~~ki~~~-----~----------------~~i~~~i~~---- 53 (90)
T smart00851 2 LVELAKRLAELGFELV-ATGG-TAKFLRE-AGLPVKTLHPKVHGG-----I----------------LAILDLIKN---- 53 (90)
T ss_pred HHHHHHHHHHCCCEEE-EccH-HHHHHHH-CCCcceeccCCCCCC-----C----------------HHHHHHhcC----
Confidence 4689999999999983 4443 2232222 466653211111000 0 013333433
Q ss_pred ccCCCeeEEEecCC---------chhHHHHHHHcCCceE
Q 040486 111 EEKEPIACLITDAT---------WYFTQAVAESLKLSRI 140 (460)
Q Consensus 111 ~~~~kpD~VI~D~~---------~~~~~~~A~~lgiP~v 140 (460)
.+.|+||.... ...-.-+|...+||++
T Consensus 54 ---g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 54 ---GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred ---CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 57999998643 1233557888899976
No 206
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.76 E-value=21 Score=34.30 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPN 56 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~ 56 (460)
+.-|+|+-.-+.|-...+-.+|..+.++|..+.++|.+.++.-
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG 143 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc
Confidence 3455677777889999999999999999999999999877643
No 207
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=59.17 E-value=42 Score=30.54 Aligned_cols=36 Identities=14% Similarity=0.001 Sum_probs=30.9
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 18 ILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 18 l~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
++..-|+.|.......+|..++++|+.|.++..+..
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 444567889999999999999999999999988653
No 208
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=59.16 E-value=7.6 Score=32.40 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
||.++-.|..|+ ++|..|+++||+|++.+.+
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEecc
Confidence 577777776665 7899999999999999886
No 209
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=58.81 E-value=5.7 Score=29.91 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhcchhHHHHHHHHhccccc
Q 040486 31 MLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQCVVPFRNCLAKLLSNVEE 110 (460)
Q Consensus 31 ~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 110 (460)
++++|+.|.+.|+++ ++|+.......+ .|++...+-+..........+. +.++.+..
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~-~Gi~~~~v~~~~~~~~~~~g~~----------------~i~~~i~~---- 58 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKE-HGIEVTEVVNKIGEGESPDGRV----------------QIMDLIKN---- 58 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHH-TT--EEECCEEHSTG-GGTHCH----------------HHHHHHHT----
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHH-cCCCceeeeeecccCccCCchh----------------HHHHHHHc----
Confidence 578999999999665 344322232222 4777655532111110001111 33444443
Q ss_pred ccCCCeeEEEecCCchh------H---HHHHHHcCCceE
Q 040486 111 EEKEPIACLITDATWYF------T---QAVAESLKLSRI 140 (460)
Q Consensus 111 ~~~~kpD~VI~D~~~~~------~---~~~A~~lgiP~v 140 (460)
.+.|+||..+.... + .-+|...+||++
T Consensus 59 ---~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 59 ---GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 57999998774421 2 447888899876
No 210
>PRK14098 glycogen synthase; Provisional
Probab=57.65 E-value=22 Score=36.07 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=29.5
Q ss_pred CCcEEEEEcC--------CCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 13 KGRRLILFPL--------PLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 13 ~~~~vl~~~~--------~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
.+|||++++. |+.|++ .-+|.++|+++||+|.++.|-+.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~g~~v~v~~P~y~ 50 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADF--MASFPQALEEEGFEARIMMPKYG 50 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHH--HHHHHHHHHHCCCeEEEEcCCCC
Confidence 3499999863 333444 56788999999999999999653
No 211
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.09 E-value=15 Score=33.78 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=22.9
Q ss_pred cCCCcccccccCchhHHHHHh------hCCceeccc
Q 040486 349 HPATGGFWTHCGWNSTLESIC------EGVPMICQP 378 (460)
Q Consensus 349 ~~~~~~~I~HgG~gs~~eal~------~GvP~v~~P 378 (460)
.+++ +|+-||=||+..++. .++|++.+-
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 4577 999999999999986 478887744
No 212
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=56.72 E-value=59 Score=28.43 Aligned_cols=146 Identities=11% Similarity=0.061 Sum_probs=75.6
Q ss_pred ccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcC-CCCccccccChh
Q 040486 266 WLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLD-GRGHMVKWAPQQ 344 (460)
Q Consensus 266 ~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~v~~~vp~~ 344 (460)
|++- .+++++.|+.|.++ ...+..|.+.+.++.+.. .. +.+.+.+..+ +++.......+.
T Consensus 5 ~l~l-~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~----------~~~~l~~l~~~~~i~~~~~~~~~ 65 (202)
T PRK06718 5 MIDL-SNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE----------LTENLVKLVEEGKIRWKQKEFEP 65 (202)
T ss_pred EEEc-CCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC----------CCHHHHHHHhCCCEEEEecCCCh
Confidence 3443 35778888877655 345666666777765543 21 2222222222 122223333345
Q ss_pred hhhccCCCcccccccCchhHHHHHh----hCCceeccccccchhh-----hHHHHhhhhcceeeeCC----ccCHHHHHH
Q 040486 345 EVLAHPATGGFWTHCGWNSTLESIC----EGVPMICQPCFGDQMV-----NARYVSDVWKVGLHLER----KLERGEVER 411 (460)
Q Consensus 345 ~~l~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~-----na~~v~~~~G~g~~~~~----~~~~~~l~~ 411 (460)
.-+..+++ +|.--+...+.+.++ .++++-+ .|.+. .-..+.+. ++-+.+.. ..-+..|++
T Consensus 66 ~~l~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~ 138 (202)
T PRK06718 66 SDIVDAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRD 138 (202)
T ss_pred hhcCCceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHH
Confidence 56777888 888877766666655 3444332 34322 23344443 45444543 223355666
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHH
Q 040486 412 TIRRVMTEAEGQEIRVRIMILKEKLNL 438 (460)
Q Consensus 412 ~i~~ll~~~~~~~~~~~a~~~~~~~~~ 438 (460)
.|.+++.. +...+-+.+.++++.+++
T Consensus 139 ~ie~~~~~-~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 139 ELEALYDE-SYESYIDFLYECRQKIKE 164 (202)
T ss_pred HHHHHcch-hHHHHHHHHHHHHHHHHH
Confidence 66665522 224555666666666654
No 213
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=56.17 E-value=1.4e+02 Score=27.40 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLS 73 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~ 73 (460)
.+|||+++.+++...-. .++++|.++|.++.++..............+....+|-++.
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs 59 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFS 59 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCC
Confidence 46899999988775433 55799999999999987643222212224677888887643
No 214
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.09 E-value=1.5e+02 Score=27.43 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=34.6
Q ss_pred ccccccChh---hhhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHH
Q 040486 336 HMVKWAPQQ---EVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNAR 388 (460)
Q Consensus 336 ~v~~~vp~~---~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 388 (460)
.+..|+||+ ++|..||+-++ -|--|+..|..+|+|.+= ++.-|-.|+.
T Consensus 241 vklPFvpqddyd~LL~lcD~n~V---RGEDSFVRAq~agkPflW--HIYpQdentH 291 (370)
T COG4394 241 VKLPFVPQDDYDELLWLCDFNLV---RGEDSFVRAQLAGKPFLW--HIYPQDENTH 291 (370)
T ss_pred EEecCCcHhHHHHHHHhccccee---ecchHHHHHHHcCCCcEE--EecCCccccH
Confidence 456899985 59999997322 477899999999999863 3344555553
No 215
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.04 E-value=15 Score=34.64 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=33.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEe
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCS 67 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~ 67 (460)
+++|||+++-.|+.|= .+|..|.++||+|++++... .+.... .|+....
T Consensus 3 ~~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~~~-~g~~~~~ 51 (313)
T PRK06249 3 SETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAVRE-NGLQVDS 51 (313)
T ss_pred CcCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHHHh-CCeEEEe
Confidence 3468999998887774 46788999999999998753 222222 3665543
No 216
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=55.82 E-value=24 Score=30.33 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=38.5
Q ss_pred CcEEEEEc---CC-CccCHHHHH-HHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCeeEEecC
Q 040486 14 GRRLILFP---LP-LQGHINPML-QLANILYSKGFSITIIHTNFNSP-NPSNYPHFTFCSIE 69 (460)
Q Consensus 14 ~~~vl~~~---~~-~~GH~~p~l-~La~~L~~~Gh~Vt~~~~~~~~~-~~~~~~g~~~~~~~ 69 (460)
|.||+++- .| .+|=+--++ .|+..|+++||+||+.|.....+ ....+.|++...+|
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 35677763 33 356666654 57888888999999998865443 34456788888876
No 217
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=55.81 E-value=97 Score=28.11 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+++|+++..-+-| ..||+.|.++|+.|++.+..
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat 34 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAG 34 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEcc
Confidence 4677777644334 57899999999988875543
No 218
>PRK06849 hypothetical protein; Provisional
Probab=55.53 E-value=24 Score=34.50 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
++|+|+++... ....+.+|+.|.++||+|.++...
T Consensus 3 ~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGAR----APAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56888887532 236899999999999999999775
No 219
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=54.91 E-value=20 Score=33.39 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=35.1
Q ss_pred hccCCCcccccccCchhHHHHHhh----CCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 347 LAHPATGGFWTHCGWNSTLESICE----GVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 347 l~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
-..+++ +|+-||-||+.+++.. ++|++.+-.. .+|... +.+.+++.+.+.+++++
T Consensus 61 ~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 61 GARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT--DIPLDDMQETLPPMLAG 119 (291)
T ss_pred ccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc--cCCHHHHHHHHHHHHcC
Confidence 345677 9999999999999774 6677764321 111111 35566666677666654
No 220
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=54.13 E-value=1e+02 Score=26.94 Aligned_cols=143 Identities=12% Similarity=0.128 Sum_probs=70.7
Q ss_pred CCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcC-CCCccccccChhhhhccC
Q 040486 272 PKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLD-GRGHMVKWAPQQEVLAHP 350 (460)
Q Consensus 272 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~v~~~vp~~~~l~~~ 350 (460)
+++++.|+.|..+ ..-+..|.+.|.++.+.... ..+.+.+-.. +++....--.+...+..+
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~-----------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEE-----------LESELTLLAEQGGITWLARCFDADILEGA 70 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCC-----------CCHHHHHHHHcCCEEEEeCCCCHHHhCCc
Confidence 5678888777644 33456666778877654322 1122221111 122322111234456777
Q ss_pred CCcccccccCchhHHH-----HHhhCCce--eccccccchhhhHHHHhhhhcceeeeCC----ccCHHHHHHHHHHHhcc
Q 040486 351 ATGGFWTHCGWNSTLE-----SICEGVPM--ICQPCFGDQMVNARYVSDVWKVGLHLER----KLERGEVERTIRRVMTE 419 (460)
Q Consensus 351 ~~~~~I~HgG~gs~~e-----al~~GvP~--v~~P~~~DQ~~na~~v~~~~G~g~~~~~----~~~~~~l~~~i~~ll~~ 419 (460)
++ +|..-|...+.+ |-..|+|+ +--|-.+| +..-..+.+. ++-+.+.. ..-...|++.|.+++.+
T Consensus 71 ~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~ 146 (205)
T TIGR01470 71 FL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPP 146 (205)
T ss_pred EE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcch
Confidence 87 888888764444 34567777 32333333 2223334442 44444433 23335566666666643
Q ss_pred chHHHHHHHHHHHHHHHH
Q 040486 420 AEGQEIRVRIMILKEKLN 437 (460)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~ 437 (460)
. ...+-+...+++..++
T Consensus 147 ~-~~~~~~~~~~~R~~~k 163 (205)
T TIGR01470 147 S-LGDLATLAATWRDAVK 163 (205)
T ss_pred h-HHHHHHHHHHHHHHHH
Confidence 1 1344445555555554
No 221
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=53.55 E-value=15 Score=31.57 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=27.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
||++.-.|+.|-+.. ..+++.|.++|++|.++.++.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~ 36 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDW 36 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECcc
Confidence 455555566665554 889999999999999999973
No 222
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=53.44 E-value=55 Score=31.82 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=27.8
Q ss_pred CCcEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFP-LPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~-~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
..++|+++- .|..|. .+|+.|.++||+|+++...
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 458899986 777775 5789999999999998753
No 223
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=53.25 E-value=11 Score=32.40 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=46.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCC-CCCCCCCC-C-CCeeEEecCCCCCCcccccccHHHHHHHHH
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTN-FNSPNPSN-Y-PHFTFCSIEDSLSETEASTADLVALLSLLN 90 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~-~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
+++-+=..+.|-++...+|+++|.++ |+.|.+-++. ...+...+ + ..+....+|-+++
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~----------------- 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFP----------------- 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSH-----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCH-----------------
Confidence 33434345789999999999999997 8888886653 22221111 0 1233332332211
Q ss_pred HhcchhHHHHHHHHhcccccccCCCeeEEEecCCc--hhHHHHHHHcCCceEEEecc
Q 040486 91 VQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATW--YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~--~~~~~~A~~lgiP~v~~~~~ 145 (460)
...+..++.+ +||++|.-..- +.-...|++.|||.+.+..-
T Consensus 85 ----~~~~rfl~~~----------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 85 ----WAVRRFLDHW----------RPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp ----HHHHHHHHHH------------SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred ----HHHHHHHHHh----------CCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 1123344554 58988766544 33355788889999997543
No 224
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=53.03 E-value=34 Score=27.41 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=25.0
Q ss_pred cEEEEE-cCCCccCH--HHHHHHHHHHHhCCCeE-EEEeCC
Q 040486 15 RRLILF-PLPLQGHI--NPMLQLANILYSKGFSI-TIIHTN 51 (460)
Q Consensus 15 ~~vl~~-~~~~~GH~--~p~l~La~~L~~~Gh~V-t~~~~~ 51 (460)
||++|+ ..+-+|+- .-.+.+|+++.+.||+| +++-..
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 667655 44444544 45788899999999984 665543
No 225
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=52.97 E-value=86 Score=31.19 Aligned_cols=88 Identities=23% Similarity=0.280 Sum_probs=53.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhc
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQC 93 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
..||+++..+ .....+++.|.+-|-+|..+......+.... ++ .+.....|..
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~--------~~----~~~~~~~D~~---------- 363 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK--------LP----VETVVIGDLE---------- 363 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh--------CC----cCcEEeCCHH----------
Confidence 5778777533 4678899999999999988877543221110 11 1110111111
Q ss_pred chhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEe
Q 040486 94 VVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLR 143 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~ 143 (460)
+ ++++.+. .++|++|.+. ....+|+++|||++.+.
T Consensus 364 -----~-l~~~i~~------~~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 -----D-LEDLACA------AGADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred -----H-HHHHHhh------cCCCEEEECc---chHHHHHHcCCCEEEec
Confidence 1 1222222 4699999886 34679999999999854
No 226
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=52.72 E-value=29 Score=31.23 Aligned_cols=99 Identities=9% Similarity=0.063 Sum_probs=52.6
Q ss_pred CCCeEEEEEcccccc---CCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCC-ccccc--cCh-
Q 040486 271 TPKSVIYVSFGSIAA---INETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRG-HMVKW--APQ- 343 (460)
Q Consensus 271 ~~~~~v~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~v~~~--vp~- 343 (460)
.+++.|.+..|+... .+.+.+.++++.+.+.++++++..+.... . ...-+.+.+..++++ .+.+- +.+
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-E----KEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-H----HHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-H----HHHHHHHHHhcccceEeecCCCCHHHH
Confidence 345667777777554 67888999999998888676554433210 0 001111111111111 12222 233
Q ss_pred hhhhccCCCcccccccCchhHHHHHhhCCceecc
Q 040486 344 QEVLAHPATGGFWTHCGWNSTLESICEGVPMICQ 377 (460)
Q Consensus 344 ~~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 377 (460)
..+++++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 468899998 7754 567899999999999987
No 227
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=52.68 E-value=30 Score=30.10 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=37.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
.++.||++.+.++-.|-....-++..|..+|.+|++++....
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp 123 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVP 123 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCC
Confidence 345799999999999999999999999999999999987644
No 228
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=52.60 E-value=28 Score=30.36 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
++.||++.+.++-.|-....-++..|..+|++|+++...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 367999999999999999999999999999999988764
No 229
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=51.92 E-value=2.1e+02 Score=30.52 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=59.0
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHH-hc
Q 040486 16 RLILFP-LPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNV-QC 93 (460)
Q Consensus 16 ~vl~~~-~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 93 (460)
.|.+.+ ....|-..-.+.|++.|.++|.+|.++=|-. . + ++ .. ......... ..
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~-~-------~----p~----~~--------~~~~~~~~~~~~ 59 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIA-Q-------P----PL----TM--------SEVEALLASGQL 59 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcc-c-------C----CC----CH--------HHHHHHHhccCC
Confidence 355553 3356888999999999999999999985421 1 1 00 00 000000100 11
Q ss_pred chhHHHHHHHHhcccccccCCCeeEEEecCCch---------hHHHHHHHcCCceEEEeccc
Q 040486 94 VVPFRNCLAKLLSNVEEEEKEPIACLITDATWY---------FTQAVAESLKLSRIVLRTNS 146 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~---------~~~~~A~~lgiP~v~~~~~~ 146 (460)
...+..+++.+.... .+.|+||.|...+ ....+|+.++.|.+.+....
T Consensus 60 ~~~~~~I~~~~~~l~-----~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 60 DELLEEIVARYHALA-----KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred hHHHHHHHHHHHHhc-----cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 122222333332211 4689999776532 24668999999999988653
No 230
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=51.82 E-value=1.1e+02 Score=27.30 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=29.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCe-EEEEeC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFS-ITIIHT 50 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~-Vt~~~~ 50 (460)
.=|+|+-.|..|--.....|.++|+++||. +..+..
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 347788899999999999999999999976 333333
No 231
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.45 E-value=22 Score=33.02 Aligned_cols=56 Identities=9% Similarity=-0.023 Sum_probs=35.7
Q ss_pred hhhccCCCcccccccCchhHHHHHh----hCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhcc
Q 040486 345 EVLAHPATGGFWTHCGWNSTLESIC----EGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 345 ~~l~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
++...+++ +|+-||-||+..++. .++|++.+- .|..--- +.+.+++.+++.+++++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGFLt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIH-----------------AGHLGFLTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEe-----------------CCCcccCCcCCHHHHHHHHHHHHcC
Confidence 33445788 999999999998766 367887633 2211111 45566666677666654
No 232
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=51.15 E-value=84 Score=31.45 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=28.0
Q ss_pred cEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 15 RRLILF-PLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl~~-~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
.+|++. +....|-..-...|++.|+++|++|..+-+
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 345555 344568888899999999999999998855
No 233
>PLN02470 acetolactate synthase
Probab=50.97 E-value=46 Score=34.64 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=53.9
Q ss_pred EccccccCC--HHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCcccccc-Chhhhh-------c
Q 040486 279 SFGSIAAIN--ETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWA-PQQEVL-------A 348 (460)
Q Consensus 279 s~Gs~~~~~--~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~v-p~~~~l-------~ 348 (460)
+|||....+ ....+.+++.|++.|.+.|+.+.+.... .+-+.+.+ .+++.++.-- -+.+.+ .
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~------~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM------EIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH------HHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHH
Confidence 567766633 2335678999999999999888776421 12222211 1112221110 111111 1
Q ss_pred cCCCcccccccCch------hHHHHHhhCCceecccc
Q 040486 349 HPATGGFWTHCGWN------STLESICEGVPMICQPC 379 (460)
Q Consensus 349 ~~~~~~~I~HgG~g------s~~eal~~GvP~v~~P~ 379 (460)
+..++++++|.|-| .+++|...++|+|++.-
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 22345588998854 78899999999999853
No 234
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=50.63 E-value=2.4e+02 Score=29.37 Aligned_cols=37 Identities=5% Similarity=-0.058 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
.+.++|+++-.+ .-...++.+..+.|++|.++.....
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLED 56 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 456899998776 3446667777888999999977543
No 235
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=50.48 E-value=25 Score=30.79 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+|++++.-.|-.| -.||+.|++.||+|++.+..
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecCC
Confidence 4666665444333 57899999999999999775
No 236
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=50.24 E-value=64 Score=29.32 Aligned_cols=36 Identities=17% Similarity=0.396 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE-EeCCCCCCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITI-IHTNFNSPN 56 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~-~~~~~~~~~ 56 (460)
|||+++..-+-| ..|++.|.++|+ |++ +++++....
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~ 37 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGEL 37 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhh
Confidence 788887654434 579999999999 554 344443333
No 237
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=50.19 E-value=48 Score=28.78 Aligned_cols=32 Identities=13% Similarity=-0.048 Sum_probs=24.8
Q ss_pred CCeeEEEecC-Cc-hhHHHHHHHcCCceEEEecc
Q 040486 114 EPIACLITDA-TW-YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 114 ~kpD~VI~D~-~~-~~~~~~A~~lgiP~v~~~~~ 145 (460)
..||+||.-. .. ..+..=|..+|||.+.+..+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 5799887554 22 66677899999999998766
No 238
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=49.91 E-value=31 Score=30.48 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=35.1
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 040486 14 GRRLILFPLP--LQGHINPMLQLANILYSKGFSITIIHTNFNSP 55 (460)
Q Consensus 14 ~~~vl~~~~~--~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~ 55 (460)
+.+|.++++| +-|-......|+.+|+++|+.|.++-.+....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLR 44 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLR 44 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCch
Confidence 3578888876 66999999999999999999999998875443
No 239
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=49.88 E-value=28 Score=27.52 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=33.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
||++.+.++-.|-.-..-++.-|..+|++|.+..+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 688889999999999999999999999999999875
No 240
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=49.82 E-value=2e+02 Score=26.26 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPL--PLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~--~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+..|++.++. |+-|--.-.+.||.+|++.|++|.++-..
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3456655544 45577777888999999999999998553
No 241
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=49.75 E-value=51 Score=32.69 Aligned_cols=34 Identities=9% Similarity=-0.041 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
++||||++-.+++-| +|+++|.+-++...+++.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 459999999988877 6899999988655555444
No 242
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=49.60 E-value=82 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=27.7
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 21 PLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 21 ~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
+-|+-|--.-.+.||..|+++|+.|.++-.+.
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 45677888999999999999999999997653
No 243
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.57 E-value=25 Score=32.82 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=38.4
Q ss_pred hhhccCCCcccccccCchhHHHHHhh----CCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhcc
Q 040486 345 EVLAHPATGGFWTHCGWNSTLESICE----GVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 345 ~~l~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
++...+++ +|+=||=||+..++.. ++|++.+- .|..--- +.+.+++.+++.+++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGFLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGIN-----------------TGRLGFLATVSKEEIEETIDELLNG 120 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEe-----------------cCCCCcccccCHHHHHHHHHHHHcC
Confidence 33445788 9999999999998773 67887733 3321111 45677777888887765
No 244
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=49.11 E-value=32 Score=32.07 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=34.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
|||+++-=|+-|-..-.+.||.+|+++|++|.++--+.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 78999999999999999999999999999999986653
No 245
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.36 E-value=25 Score=32.90 Aligned_cols=56 Identities=16% Similarity=0.023 Sum_probs=37.4
Q ss_pred hhhccCCCcccccccCchhHHHHHh----hCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhcc
Q 040486 345 EVLAHPATGGFWTHCGWNSTLESIC----EGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 345 ~~l~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
++...+|+ +|+=||=||+..+.. .++|++.+- .|...-- +.+.+++.+++.+++++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGFL~~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGIN-----------------QGHLGFLTQIPREYMTDKLLPVLEG 124 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEe-----------------cCCCeEeeccCHHHHHHHHHHHHcC
Confidence 33345788 999999999999975 367887743 2211111 45667777777777765
No 246
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=48.26 E-value=21 Score=29.95 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
||||.|+-.|..| ..+|+.|.++||+|++.-.
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 5889999887666 5789999999999998753
No 247
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.97 E-value=27 Score=32.84 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=36.5
Q ss_pred hccCCCcccccccCchhHHHHHhh----CCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhcc
Q 040486 347 LAHPATGGFWTHCGWNSTLESICE----GVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 347 l~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
...+++ +|+=||=||+..+... ++|++.+-. |...-- +.+.+++.+++.+++++
T Consensus 66 ~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~-----------------G~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 66 DSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT-----------------GHLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred ccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC-----------------CCCcccccCCHHHHHHHHHHHHcC
Confidence 345677 9999999999999774 778877432 211111 45667777777777665
No 248
>PLN02939 transferase, transferring glycosyl groups
Probab=47.90 E-value=43 Score=36.56 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCCcEEEEEcC-----CCccCHH-HHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 12 KKGRRLILFPL-----PLQGHIN-PMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 12 ~~~~~vl~~~~-----~~~GH~~-p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
..+|||+|++. .-.|-+. -.-.|.++|++.||+|.+++|-+.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 45799999862 2223333 355789999999999999999754
No 249
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=47.88 E-value=26 Score=29.93 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=28.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
||++.-.|+.|=. -...+.+.|.++|++|.++.++.
T Consensus 2 ~I~lgvtGs~~a~-~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGSIAAY-KAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCHHHHH-HHHHHHHHHHHCCCEEEEEEChH
Confidence 6777766665544 55699999999999999998864
No 250
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=47.42 E-value=23 Score=33.11 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=25.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
|||+++-.|..| ..+|..|.++||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 688888877766 5678889999999999986
No 251
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.27 E-value=27 Score=32.54 Aligned_cols=56 Identities=13% Similarity=0.018 Sum_probs=38.0
Q ss_pred hhhccCCCcccccccCchhHHHHHh----hCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhcc
Q 040486 345 EVLAHPATGGFWTHCGWNSTLESIC----EGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 345 ~~l~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
++...+++ +|+=||=||+..++. .++|++.+ +.|..--- +++.+++.+++.+++++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgi-----------------n~G~lGFl~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGI-----------------NRGNLGFLTDLDPDNALQQLSDVLEG 119 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEE-----------------ECCCCCcccccCHHHHHHHHHHHHcC
Confidence 33445777 999999999999975 36777663 22321111 45678888888888775
No 252
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.86 E-value=60 Score=30.81 Aligned_cols=59 Identities=24% Similarity=0.216 Sum_probs=48.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC--CCCCCCeeEEecCC
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPN--PSNYPHFTFCSIED 70 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~--~~~~~g~~~~~~~~ 70 (460)
.++.|++++..|..||--.|--=|..|++.|.+|.+++.-...+. .-++++++++.++.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~ 70 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPN 70 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCC
Confidence 457899999999999999999999999999999999987544332 22358999998874
No 253
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=46.62 E-value=1.8e+02 Score=24.58 Aligned_cols=86 Identities=9% Similarity=0.169 Sum_probs=43.7
Q ss_pred cEEEEcChhHhhHHHHHHhhhcCCCCccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHH
Q 040486 213 SGCIWNSLQDLELASLTKFHQDFPIPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFL 292 (460)
Q Consensus 213 ~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~ 292 (460)
...++-+.++.-....+.+...| +.+..+|-....... ...+++.+.+... +..+|+|++|+ +.+-.
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f~~------~~~~~i~~~I~~~-~pdiv~vglG~-----PkQE~ 116 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYFDE------EEEEAIINRINAS-GPDIVFVGLGA-----PKQER 116 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCCh------hhHHHHHHHHHHc-CCCEEEEECCC-----CHHHH
Confidence 45566665554444444455544 334455433322111 1234466667663 45699999997 22223
Q ss_pred HHHHHHHcCCCCEEEEEcC
Q 040486 293 EVAWGLANSKVPFLWVVRP 311 (460)
Q Consensus 293 ~~~~al~~~~~~~i~~~~~ 311 (460)
-+.+-...++..++..++.
T Consensus 117 ~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 117 WIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred HHHHHHHHCCCCEEEEECc
Confidence 3444445567775555544
No 254
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=45.81 E-value=2.1e+02 Score=28.44 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCeeEEEecCCchhHHHHHHHcCCceEEEe
Q 040486 114 EPIACLITDATWYFTQAVAESLKLSRIVLR 143 (460)
Q Consensus 114 ~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~ 143 (460)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 46999999974 4688999999999754
No 255
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=45.75 E-value=94 Score=30.79 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNS 54 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~ 54 (460)
+..|+|+-.++.|-..-+..||..|.++|+.|.+++.+.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 34566777789999999999999999999999999987655
No 256
>PRK10867 signal recognition particle protein; Provisional
Probab=45.67 E-value=1.1e+02 Score=30.41 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSK-GFSITIIHTNFNSP 55 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~-Gh~Vt~~~~~~~~~ 55 (460)
+.-|+++..++.|-..-...||..|+++ |+.|.+++.+.+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 4455677777889999999999999999 99999999986654
No 257
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=45.58 E-value=1.3e+02 Score=25.96 Aligned_cols=99 Identities=13% Similarity=0.190 Sum_probs=55.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC---C--CCCCC-CCCC-CCeeEEecCCCCCCcccccccHHHHH
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT---N--FNSPN-PSNY-PHFTFCSIEDSLSETEASTADLVALL 86 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~---~--~~~~~-~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
+--|.+++..+.|-....+.+|-.-.-+|..|.++-- . ..... .... .++.|+..++++....... .+
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~---~~-- 102 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDR---EA-- 102 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCc---HH--
Confidence 3446677777888777766666666666777766521 1 11111 1111 3688887776654332111 11
Q ss_pred HHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCch
Q 040486 87 SLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWY 126 (460)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~ 126 (460)
.. ..+...+....+.+.+ .+.|+||.|.+++
T Consensus 103 -d~-~aa~~~w~~a~~~l~~-------~~ydlviLDEl~~ 133 (198)
T COG2109 103 -DI-AAAKAGWEHAKEALAD-------GKYDLVILDELNY 133 (198)
T ss_pred -HH-HHHHHHHHHHHHHHhC-------CCCCEEEEehhhH
Confidence 11 3334445555555554 5799999998764
No 258
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=44.73 E-value=2.6e+02 Score=27.56 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
..|++++..+.+ .+.+++.|.+-|-+|..+...
T Consensus 287 gkrv~i~~~~~~-----~~~la~~l~elGm~v~~~~~~ 319 (410)
T cd01968 287 GKKAALYTGGVK-----SWSLVSALQDLGMEVVATGTQ 319 (410)
T ss_pred CCEEEEEcCCch-----HHHHHHHHHHCCCEEEEEecc
Confidence 567777654332 367888888999999888664
No 259
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=44.36 E-value=88 Score=30.76 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=38.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPN 56 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~ 56 (460)
.+..|+++-.=+.|-...+-.||+.|.++|+.|.+++.+.+++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA 142 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA 142 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence 45667787777889999999999999999999999999876654
No 260
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=44.31 E-value=1.3e+02 Score=28.59 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=33.5
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 040486 18 ILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPN 56 (460)
Q Consensus 18 l~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~ 56 (460)
.=++.|+.|-.--.+.|++.|.++|++|.+++-.+....
T Consensus 41 GNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~ 79 (326)
T PF02606_consen 41 GNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRKS 79 (326)
T ss_pred cccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCCC
Confidence 345788999999999999999999999999998765543
No 261
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=43.99 E-value=34 Score=32.21 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=32.2
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 040486 15 RRLILFP-LPLQGHINPMLQLANILYSKGFSITIIHTNFNS 54 (460)
Q Consensus 15 ~~vl~~~-~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~ 54 (460)
||++|+. -|+-|-..-..++|-.++++|++|.+++++...
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 5677664 567799999999999999999999999998654
No 262
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=43.89 E-value=39 Score=30.90 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=33.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|+|++..=|+-|-..-...||.+|+++|++|.++=-+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 7788888788899999999999999999999988554
No 263
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.80 E-value=33 Score=32.31 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
++|||.|+-.|..| ..+|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46899999877766 47899999999999988764
No 264
>PRK09739 hypothetical protein; Provisional
Probab=43.62 E-value=59 Score=28.23 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=24.1
Q ss_pred CCCcEEEEEc-CCCcc-CHHH-HHHHHHHHHhCCCeEEEEeC
Q 040486 12 KKGRRLILFP-LPLQG-HINP-MLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 12 ~~~~~vl~~~-~~~~G-H~~p-~l~La~~L~~~Gh~Vt~~~~ 50 (460)
+++|||+++. +|-.+ .-.- .-.+++.|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 3578998774 44332 2222 33456677778999998743
No 265
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=43.58 E-value=57 Score=27.44 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHh-CCCeEEEEeC
Q 040486 27 HINPMLQLANILYS-KGFSITIIHT 50 (460)
Q Consensus 27 H~~p~l~La~~L~~-~Gh~Vt~~~~ 50 (460)
|....-+|+++|.+ +|+++.+..-
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 77788899999988 4555544433
No 266
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=43.32 E-value=36 Score=28.37 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+..+|+++-.|..| ...++.|.+.|++|++++++
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 45788888765444 77899999999999999754
No 267
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=43.26 E-value=42 Score=30.74 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=32.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|+|+++.=|+-|-..-++.||.+|+++|++|.++=-+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 6788887778888899999999999999999998554
No 268
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.78 E-value=25 Score=32.43 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=36.1
Q ss_pred hhhhccCCCcccccccCchhHHHHHh----hCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhc
Q 040486 344 QEVLAHPATGGFWTHCGWNSTLESIC----EGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMT 418 (460)
Q Consensus 344 ~~~l~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~ 418 (460)
.++...+++ +|+=||=||+..++. .++|++.+-.. .+|... +.+.+++.+.+.++++
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT--DIDPKNAYEQLEACLE 97 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc--cCCHHHHHHHHHHHHh
Confidence 444456788 999999999998755 36788764321 112111 3456666666666666
No 269
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=42.78 E-value=2.3e+02 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
..+++++..+ .-.+.+++.|.+-|-+|..+.+.
T Consensus 326 Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~ 358 (456)
T TIGR01283 326 GKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQ 358 (456)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeee
Confidence 5677776543 34468888899999999988664
No 270
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=42.69 E-value=21 Score=32.37 Aligned_cols=23 Identities=17% Similarity=0.363 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCC
Q 040486 30 PMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 30 p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
-.-.|+++|+++||+|++++|-+
T Consensus 21 v~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHhcCCeEEEEEccc
Confidence 35678999999999999999974
No 271
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=42.64 E-value=26 Score=34.96 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|||+++-.|. .-|+-|.+|+++||+||++-..
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEecc
Confidence 6788876554 4488899999999999999664
No 272
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.63 E-value=31 Score=32.43 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=37.3
Q ss_pred hhccCCCcccccccCchhHHHHHhh----CCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 346 VLAHPATGGFWTHCGWNSTLESICE----GVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 346 ~l~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
+...+++ +|+=||-||+..++.. ++|++.+... .+|.-. +...+++.+++.+++++
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA--EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec--cCCHHHHHHHHHHHHcC
Confidence 3345778 9999999999998764 7888875431 112111 34567777777777765
No 273
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=42.63 E-value=50 Score=25.75 Aligned_cols=92 Identities=12% Similarity=0.072 Sum_probs=50.7
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCC--CCCCcccccccHHHHHHHHHHhcchh
Q 040486 19 LFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIED--SLSETEASTADLVALLSLLNVQCVVP 96 (460)
Q Consensus 19 ~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (460)
|++.... +-.-++++++.|.+.|.++. .+. ........ .|+.+..+.. +.... . . .
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~-aT~-gTa~~L~~-~gi~~~~v~~~~~~~~~--~--~-------------~- 61 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY-ATE-GTADFLLE-NGIPVTPVAWPSEEPQN--D--K-------------P- 61 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE-Ecc-HHHHHHHH-cCCCceEeeeccCCCCC--C--c-------------h-
Confidence 4444333 55568899999999999984 333 22222222 3665554421 11000 0 0 1
Q ss_pred HHHHHHHHhcccccccCCCeeEEEecCC---------chhHHHHHHHcCCceEE
Q 040486 97 FRNCLAKLLSNVEEEEKEPIACLITDAT---------WYFTQAVAESLKLSRIV 141 (460)
Q Consensus 97 l~~~l~~l~~~~~~~~~~kpD~VI~D~~---------~~~~~~~A~~lgiP~v~ 141 (460)
.+++.+.. .++|+||..+. .+.-.-.|-.+|||++.
T Consensus 62 --~i~~~i~~-------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 62 --SLRELLAE-------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred --hHHHHHHc-------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 12222222 47999998543 24456688999999974
No 274
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=41.90 E-value=30 Score=32.34 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
|||+++-.|..| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 789999777776 4578889999999999976
No 275
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=41.47 E-value=37 Score=31.48 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=26.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+||.|+-.|.+| .++|+.|.++||+|++..-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 578888887776 58899999999999998653
No 276
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=41.44 E-value=45 Score=32.70 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=25.8
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEE
Q 040486 16 RLILF-PLPLQGHINPMLQLANILYSKGFSITI 47 (460)
Q Consensus 16 ~vl~~-~~~~~GH~~p~l~La~~L~~~Gh~Vt~ 47 (460)
+|++- |..+.|-..-++.|.++|++||+.|-=
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccc
Confidence 44444 455679999999999999999999974
No 277
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=41.29 E-value=38 Score=33.22 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=33.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
.+++||++.-.|+.+ ..-...+.+.|.++|++|.++.++..
T Consensus 4 l~~k~IllgvTGsia-a~k~~~lv~~L~~~g~~V~vv~T~~A 44 (399)
T PRK05579 4 LAGKRIVLGVSGGIA-AYKALELVRRLRKAGADVRVVMTEAA 44 (399)
T ss_pred CCCCeEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 356789888777664 44779999999999999999988743
No 278
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=41.20 E-value=1.6e+02 Score=25.52 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHH
Q 040486 287 NETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLE 366 (460)
Q Consensus 287 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~e 366 (460)
..++-+.+.+.+.+.+..+|...+. ..-|.+.|.++.+++++ ==||++ .=.++|..+..+
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvLAGy--------MrIL~~~fl~~~~grIl----------NIHPSL--LP~f~G~h~~~~ 123 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVLAGY--------MRILGPEFLSRFEGRIL----------NIHPSL--LPAFPGLHAHEQ 123 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcch--------HHHcCHHHHHHhhcceE----------ecCccc--ccCCCCchHHHH
Confidence 3455566888998888887665554 23366666555554322 237888 889999999999
Q ss_pred HHhhCCceeccccc--cchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 040486 367 SICEGVPMICQPCF--GDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEGQEIRVRIMILKE 434 (460)
Q Consensus 367 al~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~ 434 (460)
|+.+|+..-.+-++ .+..+-+-.+.+. .+-+...-|.|.|.+.|.+. +- .-|-+..+.+.+
T Consensus 124 A~~aG~k~sG~TVH~V~e~vD~GpII~Q~---~Vpv~~~Dt~etl~~RV~~~-Eh---~lyp~~v~~~~~ 186 (200)
T COG0299 124 ALEAGVKVSGCTVHFVTEGVDTGPIIAQA---AVPVLPGDTAETLEARVLEQ-EH---RLYPLAVKLLAE 186 (200)
T ss_pred HHHcCCCccCcEEEEEccCCCCCCeEEEE---eeeecCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHh
Confidence 99999998665543 2333334333331 12222245889999988774 33 466666665554
No 279
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=41.09 E-value=39 Score=30.36 Aligned_cols=40 Identities=8% Similarity=-0.037 Sum_probs=29.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTNFNSP 55 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~ 55 (460)
||++.-.|+.+=+.-.+.|++.|.++ ||+|.++.++....
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~ 42 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEE 42 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHh
Confidence 35555445445557899999999999 99999999864333
No 280
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=41.03 E-value=1.1e+02 Score=29.12 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=32.2
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 040486 19 LFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNS 54 (460)
Q Consensus 19 ~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~ 54 (460)
=++.|+.|-.--.+.||++|.++|..+.+++-.+..
T Consensus 54 NltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 54 NLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred cEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 457899999999999999999999999999887654
No 281
>PRK04940 hypothetical protein; Provisional
Probab=40.80 E-value=66 Score=27.51 Aligned_cols=31 Identities=6% Similarity=0.146 Sum_probs=26.3
Q ss_pred CeeEEEecCCc-hhHHHHHHHcCCceEEEecc
Q 040486 115 PIACLITDATW-YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 115 kpD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 145 (460)
+++++|...+. ++|.-+|+++|+|.|.+.|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46788877755 99999999999999998776
No 282
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=40.60 E-value=32 Score=32.80 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+|||+|+-.|..| ..+|..|.++||+|+++...
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 4899999887776 45788899999999998763
No 283
>PLN02929 NADH kinase
Probab=40.50 E-value=33 Score=32.08 Aligned_cols=66 Identities=9% Similarity=0.076 Sum_probs=42.5
Q ss_pred ccCCCcccccccCchhHHHHHh---hCCceecccccc------chhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhc
Q 040486 348 AHPATGGFWTHCGWNSTLESIC---EGVPMICQPCFG------DQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMT 418 (460)
Q Consensus 348 ~~~~~~~~I~HgG~gs~~eal~---~GvP~v~~P~~~------DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~ 418 (460)
..+|+ +|+-||-||+..+.. .++|++.+=... .+..+.-...+ -.|.-. ..+.+++.+++.++++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r--~lGfL~--~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARR--STGHLC--AATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccccc--Cccccc--cCCHHHHHHHHHHHHc
Confidence 34577 999999999999855 467887765431 12333322111 233222 4578899999999987
Q ss_pred c
Q 040486 419 E 419 (460)
Q Consensus 419 ~ 419 (460)
+
T Consensus 137 g 137 (301)
T PLN02929 137 G 137 (301)
T ss_pred C
Confidence 6
No 284
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=40.39 E-value=39 Score=28.75 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=27.7
Q ss_pred EEEEEcCCCccCHHH-HHHHHHHHHh-CCCeEEEEeCCCCC
Q 040486 16 RLILFPLPLQGHINP-MLQLANILYS-KGFSITIIHTNFNS 54 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p-~l~La~~L~~-~Gh~Vt~~~~~~~~ 54 (460)
||+..-.|+ ||... .+.+.++|.+ +||+|.++.++...
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~ 40 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGE 40 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHH
Confidence 345444444 77766 8899999985 59999999887433
No 285
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=40.36 E-value=59 Score=28.70 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
++.||++.+.++-.|-....-++..|..+|++|++++...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 126 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV 126 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 5689999999999999999999999999999999998753
No 286
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=40.25 E-value=35 Score=33.31 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
+.+||++.-.|+.|= .-.+.+.+.|.+.|++|.++.++.
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHh
Confidence 357888887776665 558999999999999999998864
No 287
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=40.21 E-value=1.7e+02 Score=25.16 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKG 42 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~G 42 (460)
+..+++++ .|+-||..=|+.|-++|.++=
T Consensus 37 ~s~~~lVv-lGSGGHT~EMlrLl~~l~~~y 65 (211)
T KOG3339|consen 37 KSLSTLVV-LGSGGHTGEMLRLLEALQDLY 65 (211)
T ss_pred CcceEEEE-EcCCCcHHHHHHHHHHHHhhc
Confidence 33466555 479999999999999997763
No 288
>PRK00784 cobyric acid synthase; Provisional
Probab=40.14 E-value=3.3e+02 Score=27.59 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=26.7
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 17 LILF-PLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 17 vl~~-~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
|++. +....|-..-...|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4444 334569999999999999999999997743
No 289
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=39.68 E-value=2e+02 Score=28.99 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
...|++++..+ .-.+.+++.|.+.|-+|..+.+.
T Consensus 323 ~Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~ 356 (475)
T PRK14478 323 EGKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVK 356 (475)
T ss_pred CCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEE
Confidence 35688776543 34557888899999999988765
No 290
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=39.58 E-value=62 Score=27.05 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=24.5
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHcCCC
Q 040486 275 VIYVSFGSIAAINETEFLEVAWGLANSKV 303 (460)
Q Consensus 275 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 303 (460)
.+|+|+||-.......++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 59999999888777888888888888764
No 291
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=39.51 E-value=63 Score=26.13 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
+.+|++-+.++-+|-.----++..|.++|++|.......
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v 39 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLS 39 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCC
Confidence 358999999999999999999999999999999987753
No 292
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=39.46 E-value=48 Score=30.20 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=33.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
....++|+-.++.|-..=..+++.+|.++|+.|+|++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 346788998888888888899999999999999999885
No 293
>PRK13768 GTPase; Provisional
Probab=39.34 E-value=87 Score=28.49 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=29.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
.+++...++.|-..-+..++..|...|+.|.++..+.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 3445556677888889999999999999999997653
No 294
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=39.20 E-value=47 Score=30.39 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=25.9
Q ss_pred CeEEEEEccccccCCHH-HHHHHHHHHHcC--CCCEEEEEcCCc
Q 040486 273 KSVIYVSFGSIAAINET-EFLEVAWGLANS--KVPFLWVVRPGL 313 (460)
Q Consensus 273 ~~~v~vs~Gs~~~~~~~-~~~~~~~al~~~--~~~~i~~~~~~~ 313 (460)
|.++.+||||......+ -+..+.+.+++. ++.+-|+++...
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~~ 44 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSRI 44 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-HH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHHH
Confidence 35899999998875443 677777777763 688889987653
No 295
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=39.14 E-value=37 Score=27.34 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.6
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 26 GHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 26 GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
-.+.-.+-++..|.++||+|++++++
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-H
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCH
Confidence 44556788999999999999999997
No 296
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.12 E-value=41 Score=30.96 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=35.7
Q ss_pred cCCCcccccccCchhHHHHHhh-CCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhcc
Q 040486 349 HPATGGFWTHCGWNSTLESICE-GVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 349 ~~~~~~~I~HgG~gs~~eal~~-GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
.+++ +|+=||-||+..++.. ..|++.+- .|..--- +.+.+++.+++.+++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN-----------------~G~lGFL~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGIN-----------------MGGLGFLTEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEE-----------------CCCCccCcccCHHHHHHHHHHHHcC
Confidence 5677 9999999999999873 45665532 2211111 46778888888888775
No 297
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=38.24 E-value=6.4 Score=20.93 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=13.9
Q ss_pred CchhHHHHHhhCCceec
Q 040486 360 GWNSTLESICEGVPMIC 376 (460)
Q Consensus 360 G~gs~~eal~~GvP~v~ 376 (460)
|.|++.-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67899999999998876
No 298
>PLN00016 RNA-binding protein; Provisional
Probab=38.15 E-value=40 Score=32.75 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=25.5
Q ss_pred CcEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFP--LPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~--~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+++|+++. .|+.|.+ -..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 46788772 2344444 456789999999999998764
No 299
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=37.78 E-value=1.3e+02 Score=30.51 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=73.0
Q ss_pred HhhcCCCCccccccCh---hhhhccCCCccccc-----ccCchhHHHHHhhCCceecccccc------chhhhHHHHhhh
Q 040486 328 LETLDGRGHMVKWAPQ---QEVLAHPATGGFWT-----HCGWNSTLESICEGVPMICQPCFG------DQMVNARYVSDV 393 (460)
Q Consensus 328 ~~~~~~~~~v~~~vp~---~~~l~~~~~~~~I~-----HgG~gs~~eal~~GvP~v~~P~~~------DQ~~na~~v~~~ 393 (460)
.++.++++.+.-|... ..+++-+|+ ++- -||. |-++|+++|.+-|+.+..+ |--.++ ....
T Consensus 344 a~~~~~~~~~~i~~~~~la~~i~agaD~--~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~ 418 (487)
T COG0297 344 ASRHPGRVLVVIGYDEPLAHLIYAGADV--ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV 418 (487)
T ss_pred HHhcCceEEEEeeecHHHHHHHHhcCCE--EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCc
Confidence 3445555566655443 346677776 443 2444 6789999999888888753 333333 5663
Q ss_pred hcceeeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 394 WKVGLHLERKLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 394 ~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
|.|...... +++.+..++++.+. -|+..-..++...+.++...-|-...+.+.++..+
T Consensus 419 -gtGf~f~~~-~~~~l~~al~rA~~-----~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~ 476 (487)
T COG0297 419 -GTGFLFLQT-NPDHLANALRRALV-----LYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYK 476 (487)
T ss_pred -eeEEEEecC-CHHHHHHHHHHHHH-----HhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHH
Confidence 888888775 99999999998874 24443333444444444444445555555555544
No 300
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=37.70 E-value=46 Score=32.87 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+.|||.|+-.|..| +++|..|+++||+|+.+-..
T Consensus 2 ~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 2 SFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 45889888665544 57899999999999988653
No 301
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=37.29 E-value=62 Score=27.68 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=24.3
Q ss_pred CCeeEEEecC--CchhHHHHHHHcCCceEEEe
Q 040486 114 EPIACLITDA--TWYFTQAVAESLKLSRIVLR 143 (460)
Q Consensus 114 ~kpD~VI~D~--~~~~~~~~A~~lgiP~v~~~ 143 (460)
.++|.|++=. ....|..+|.++|+|++.+.
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 3599998655 34788999999999999953
No 302
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=37.23 E-value=52 Score=28.02 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=25.1
Q ss_pred HHHHHhcccccccCCCeeEEEecCCchh--HHHHHHHcCCceEEEe
Q 040486 100 CLAKLLSNVEEEEKEPIACLITDATWYF--TQAVAESLKLSRIVLR 143 (460)
Q Consensus 100 ~l~~l~~~~~~~~~~kpD~VI~D~~~~~--~~~~A~~lgiP~v~~~ 143 (460)
.++.+.+ .+||+||....... ....-+..|||++.+.
T Consensus 61 n~E~ll~-------l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 61 NVELIVA-------LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CHHHHhc-------cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 4566665 57999998654322 3334567999998864
No 303
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=37.23 E-value=1.7e+02 Score=28.96 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=21.1
Q ss_pred CCeeEEEecCCchhHHHHHHHcCCceEEE
Q 040486 114 EPIACLITDATWYFTQAVAESLKLSRIVL 142 (460)
Q Consensus 114 ~kpD~VI~D~~~~~~~~~A~~lgiP~v~~ 142 (460)
.+||+||..... ..+|+++|||++.+
T Consensus 357 ~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 357 LKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred cCCCEEEecCcc---chhhhhcCCCEEec
Confidence 379999998643 35899999999985
No 304
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=37.20 E-value=19 Score=35.84 Aligned_cols=81 Identities=10% Similarity=-0.014 Sum_probs=45.6
Q ss_pred CCeeEEEecCCc--hhHHHHHHHcCCceEEEecccHHHHHHHHhcchhhccCCCCCCCCCCCccCCCCCCCCCCCCCCcc
Q 040486 114 EPIACLITDATW--YFTQAVAESLKLSRIVLRTNSVSSFLVFAAFPVLSQKGYFPIRDSQSEAPVPELPPLRVKDIPVVE 191 (460)
Q Consensus 114 ~kpD~VI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (460)
.+||+|+..... ..|..+++++|||.+.+..+-- ...+ . ..++.+..
T Consensus 400 ~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsLe----k~Ky----~-----------------------~s~~~w~e 448 (550)
T PF00862_consen 400 GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSLE----KTKY----E-----------------------DSDLYWKE 448 (550)
T ss_dssp S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-H----HHHH----H-----------------------TTTTTSHH
T ss_pred CCCcEEEeccCcchHHHHHHHhhcCCceehhhhccc----cccc----c-----------------------ccCCCHHH
Confidence 479999987532 6678899999999999776621 1111 0 01112222
Q ss_pred cccchhHHHHHHHHHhhcccccEEEEcChhHhhH
Q 040486 192 TCYRETLHRLVTEATNQMKVSSGCIWNSLQDLEL 225 (460)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 225 (460)
......+...+..-.-.+..++.++..|+.+...
T Consensus 449 ~e~~Yhfs~qftAd~iamn~adfIItST~QEI~g 482 (550)
T PF00862_consen 449 IEEKYHFSCQFTADLIAMNAADFIITSTYQEIAG 482 (550)
T ss_dssp HHHHH-HHHHHHHHHHHHHHSSEEEESSHHHHHB
T ss_pred HHhhccchhhhhHHHHHhhcCCEEEEcchHhhcC
Confidence 1233344555554445567889999999888763
No 305
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.11 E-value=54 Score=30.66 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=37.2
Q ss_pred ccCCCcccccccCchhHHHHHhh----CCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 348 AHPATGGFWTHCGWNSTLESICE----GVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 348 ~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+++ +|+=||-||+.+++.. ++|++.+... .+|. + .+.+.+++.+++.+++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGF-l-~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGF-L-TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------cccc-c-ccCCHHHHHHHHHHHHcC
Confidence 35677 9999999999999753 6687775441 1121 1 146678888888888765
No 306
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=37.07 E-value=2.4e+02 Score=23.31 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=23.8
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEE
Q 040486 22 LPLQGHINPMLQLANILYSKGFSITII 48 (460)
Q Consensus 22 ~~~~GH~~p~l~La~~L~~~Gh~Vt~~ 48 (460)
.+..|-..-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456688888999999999999999986
No 307
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=36.88 E-value=52 Score=31.10 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+|||.++-.|++| -+||..|++.||+|++.+.+
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 4789999989888 47899999999999999875
No 308
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=36.42 E-value=2.5e+02 Score=23.37 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=69.4
Q ss_pred EEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCccccc
Q 040486 278 VSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWT 357 (460)
Q Consensus 278 vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~ 357 (460)
|-+||.+ .....++....|+.++...-..+.. ....|+.+. .|+.+.+- ++..+ ||.
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~S--------aHRtp~~~~----------~~~~~a~~-~g~~v--iIa 59 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVS--------AHRTPELML----------EYAKEAEE-RGIKV--IIA 59 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEEC--------cccCHHHHH----------HHHHHHHH-CCCeE--EEE
Confidence 3456655 4566777888888887664333332 233555542 11111110 12344 888
Q ss_pred ccCchhHHHHH---hhCCceeccccccc--hhhhH-HHHhh--hhcc--eeeeCC-ccCHHHHHHHHHHHhccchHHHHH
Q 040486 358 HCGWNSTLESI---CEGVPMICQPCFGD--QMVNA-RYVSD--VWKV--GLHLER-KLERGEVERTIRRVMTEAEGQEIR 426 (460)
Q Consensus 358 HgG~gs~~eal---~~GvP~v~~P~~~D--Q~~na-~~v~~--~~G~--g~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~ 426 (460)
=+|.-.-.-.+ ..-+|+|.+|.... ....+ .-+.+ . |+ +...-. ..+...++..|-. +.| +.++
T Consensus 60 ~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~-gvpvatv~I~~~~nAa~~AaqIl~-~~d---~~l~ 134 (156)
T TIGR01162 60 GAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPS-GVPVATVAIGNAGNAALLAAQILG-IKD---PELA 134 (156)
T ss_pred eCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCC-CCeeEEEEcCChhHHHHHHHHHHc-CCC---HHHH
Confidence 77753222222 23569999998432 11111 11222 2 42 222222 4556666655533 366 7888
Q ss_pred HHHHHHHHHHHHH
Q 040486 427 VRIMILKEKLNLC 439 (460)
Q Consensus 427 ~~a~~~~~~~~~~ 439 (460)
++.+.+++..++.
T Consensus 135 ~kl~~~r~~~~~~ 147 (156)
T TIGR01162 135 EKLKEYRENQKEE 147 (156)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877753
No 309
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=36.35 E-value=2.6e+02 Score=23.54 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=41.2
Q ss_pred ccEEEEcChhHhhHHHHHHhhhcCCCCccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHH
Q 040486 212 SSGCIWNSLQDLELASLTKFHQDFPIPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEF 291 (460)
Q Consensus 212 ~~~~l~~~~~~l~~~~~~~~~~~~~~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~ 291 (460)
....++-+.++.-....+.++..+ +.+..+|........ ....++.+.+... ...+|+|++|+ +.+-
T Consensus 47 ~~v~llG~~~~~~~~~~~~l~~~y-p~l~i~g~~~g~~~~------~~~~~i~~~I~~~-~pdiv~vglG~-----PkQE 113 (171)
T cd06533 47 LRVFLLGAKPEVLEKAAERLRARY-PGLKIVGYHHGYFGP------EEEEEIIERINAS-GADILFVGLGA-----PKQE 113 (171)
T ss_pred CeEEEECCCHHHHHHHHHHHHHHC-CCcEEEEecCCCCCh------hhHHHHHHHHHHc-CCCEEEEECCC-----CHHH
Confidence 344455555544333333445533 334444422222111 1112255666653 45599999997 2221
Q ss_pred HHHHHHHHcCCCCEEEEEcC
Q 040486 292 LEVAWGLANSKVPFLWVVRP 311 (460)
Q Consensus 292 ~~~~~al~~~~~~~i~~~~~ 311 (460)
.-+.+-...++..++..+++
T Consensus 114 ~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 114 LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHCCCCEEEEece
Confidence 22333333446666666665
No 310
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=36.34 E-value=49 Score=31.39 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.|||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5899999887777 46788999999999998774
No 311
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=36.30 E-value=49 Score=29.04 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=31.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+=|++..+|+.|-.--.-.||++|.+++|+|...+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 4456667889999999999999999999999888764
No 312
>PRK07206 hypothetical protein; Provisional
Probab=36.19 E-value=1.3e+02 Score=29.53 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=23.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
++|+++-.... ...+++++.++|+++.+++..
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 45666654322 346899999999999988875
No 313
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.05 E-value=50 Score=30.13 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=34.4
Q ss_pred cCCCcccccccCchhHHHHHh-hCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhcc
Q 040486 349 HPATGGFWTHCGWNSTLESIC-EGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 349 ~~~~~~~I~HgG~gs~~eal~-~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
.+++ +|+=||-||+..|+. .++|++.+- .|..--. +.+.+++.+++.++++.
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin-----------------~G~lGfl~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFK-----------------AGRLGFLSSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEe-----------------CCCCccccccCHHHHHHHHHHHHcC
Confidence 4577 999999999999877 467766533 2211111 45667777777777664
No 314
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=35.95 E-value=47 Score=31.32 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
||||+|+-.|..| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 4799999777666 45788899999999998764
No 315
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=35.39 E-value=51 Score=32.49 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=25.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|||.|+-.|..| +.+|..|+++||+|+.+...
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 688888766655 68899999999999988653
No 316
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=35.38 E-value=51 Score=28.29 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecC--CCCCCc
Q 040486 29 NPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIE--DSLSET 75 (460)
Q Consensus 29 ~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~ 75 (460)
.-.+.+|+.|.+.|.++. . +......... .|+.+..+. .++|+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~-A-T~GTAk~L~e-~GI~v~~V~k~TgfpE~ 56 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-S-TGGTAKFLKE-AGIPVTDVSDITGFPEI 56 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-E-ccHHHHHHHH-cCCeEEEhhhccCCcHh
Confidence 447899999999999984 3 4333333333 477777765 355543
No 317
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.36 E-value=2.3e+02 Score=23.92 Aligned_cols=92 Identities=7% Similarity=0.062 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCC------CCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhcchhHHHHHHHH
Q 040486 31 MLQLANILYSKGFSITIIHTNFNS------PNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQCVVPFRNCLAKL 104 (460)
Q Consensus 31 ~l~La~~L~~~Gh~Vt~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 104 (460)
+-.|.+...++|..|.+++..... .....++|+.+....++.-.. .....+++.+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~-------------------~~~~~i~~~I 97 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDE-------------------EEEEAIINRI 97 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCh-------------------hhHHHHHHHH
Confidence 445566666689999999886322 112356788888654432200 1122345555
Q ss_pred hcccccccCCCeeEEEecCCc----hhHHHHHHHcCCceEEEecccHHH
Q 040486 105 LSNVEEEEKEPIACLITDATW----YFTQAVAESLKLSRIVLRTNSVSS 149 (460)
Q Consensus 105 ~~~~~~~~~~kpD~VI~D~~~----~~~~~~A~~lgiP~v~~~~~~~~~ 149 (460)
.+ .+||+|++...+ .|.....+.++.+ +.+..+.++.
T Consensus 98 ~~-------~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d 138 (172)
T PF03808_consen 98 NA-------SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFD 138 (172)
T ss_pred HH-------cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhh
Confidence 54 479999998866 5677778888888 5555554443
No 318
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=35.34 E-value=74 Score=29.73 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=32.0
Q ss_pred CCcEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 13 KGRRLI-LFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 13 ~~~~vl-~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
++||+. |+.=|+-|-..-...||-+|++.|++|.++-.+.
T Consensus 2 ~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 2 SKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 455554 5566677889999999999999999999996653
No 319
>PRK04148 hypothetical protein; Provisional
Probab=35.04 E-value=85 Score=25.39 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.+.+||+.+-.| .| ..+|..|++.||+|+.+=..
T Consensus 15 ~~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 15 GKNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred ccCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 345889988877 44 34688888999999988553
No 320
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=34.90 E-value=95 Score=24.28 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=33.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
||++..-++.|-......+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999988764
No 321
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=34.85 E-value=84 Score=27.18 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=24.8
Q ss_pred CCeeEEEecCC--chhHHHHHHHcCCceEEEec
Q 040486 114 EPIACLITDAT--WYFTQAVAESLKLSRIVLRT 144 (460)
Q Consensus 114 ~kpD~VI~D~~--~~~~~~~A~~lgiP~v~~~~ 144 (460)
.++|+|++-.. .+.|..+|..+|+|++.+.-
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 36999987553 37888999999999999654
No 322
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=34.85 E-value=78 Score=29.55 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCeEEEEeC
Q 040486 12 KKGRRLILFPLPLQG-H---INPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 12 ~~~~~vl~~~~~~~G-H---~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
|+++||+++..|..+ | +...-.++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 357899999876443 2 35577889999999999988743
No 323
>PRK05854 short chain dehydrogenase; Provisional
Probab=34.78 E-value=78 Score=29.77 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=29.6
Q ss_pred CCccccccCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 2 DVLGDSHIHQKKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 2 ~~~~~~~~~~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
.-..+..+...+ .|+++++.++. -+ -..+|++|+++|++|.+++-
T Consensus 2 ~~~~~~~~~~l~-gk~~lITGas~-GI--G~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 2 RKPLDITVPDLS-GKRAVVTGASD-GL--GLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred CCCccccCcccC-CCEEEEeCCCC-hH--HHHHHHHHHHCCCEEEEEeC
Confidence 344455555544 35666665543 22 47889999999999988865
No 324
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=34.73 E-value=62 Score=27.82 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=22.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|||.++ +.||+ -+.+|-.|+++||+|+-+-..
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 788877 34554 478899999999999998664
No 325
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=34.72 E-value=73 Score=28.66 Aligned_cols=41 Identities=12% Similarity=0.091 Sum_probs=27.5
Q ss_pred CCCCCcEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 10 HQKKGRRLILFP-LPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 10 ~~~~~~~vl~~~-~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
..+..++|+++. +| --=..-+-.....|+++||+|++++--
T Consensus 6 ~~~~~~~vL~v~aHP-DDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 6 PMLDPLRVLVVFAHP-DDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred ccccCCcEEEEecCC-cchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 345678888774 43 222344566677789999999998654
No 326
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=34.57 E-value=50 Score=29.47 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=25.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|+++++-.|-.| ..+|+.|.+.||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 567777665544 68999999999999999765
No 327
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=34.48 E-value=79 Score=27.42 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=29.3
Q ss_pred cEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFP--LPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~--~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+|++.++ -++-|-..-...||.+|+++|++|.++-.+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 6665554 446677888999999999999999998664
No 328
>PRK04946 hypothetical protein; Provisional
Probab=34.33 E-value=47 Score=28.44 Aligned_cols=57 Identities=16% Similarity=0.083 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccCh-hhhhccCCCcccccccCchhHH
Q 040486 291 FLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQ-QEVLAHPATGGFWTHCGWNSTL 365 (460)
Q Consensus 291 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~-~~~l~~~~~~~~I~HgG~gs~~ 365 (460)
+..++..+...+.+-+.++.+.+ .+++.+ .|..|+.| ..|++.++. --+|||.|.+.
T Consensus 112 L~~fl~~a~~~g~r~v~IIHGkG-----------~gvLk~-----~V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 112 LGALIAACRKEHVFCACVMHGHG-----------KHILKQ-----QTPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC-----------HhHHHH-----HHHHHHcCCchhheeecc--CcccCCceEEE
Confidence 44455555556777666665543 233222 35688876 478888887 88999998753
No 329
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=34.26 E-value=77 Score=27.57 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCccCHHHHHHH-HHHHHh-CCCeEEEEeC
Q 040486 14 GRRLILFPLPLQGHINPMLQL-ANILYS-KGFSITIIHT 50 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~L-a~~L~~-~Gh~Vt~~~~ 50 (460)
+|||+++-+..+||..-+... ++.+.+ .|++|.++.-
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 368888877778999998774 566666 8999988764
No 330
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.24 E-value=53 Score=30.11 Aligned_cols=54 Identities=9% Similarity=0.153 Sum_probs=34.7
Q ss_pred cCCCcccccccCchhHHHHHhh-----CCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 349 HPATGGFWTHCGWNSTLESICE-----GVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 349 ~~~~~~~I~HgG~gs~~eal~~-----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
.+++ +|+=||=||+..++.. .+|++.+-..+ .+|.. .+.+.+++.+++.+++++
T Consensus 39 ~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL--~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 39 NANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY--CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred CccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc--ccCCHHHHHHHHHHHHcC
Confidence 3577 9999999999999874 45665533300 11111 145667777788777765
No 331
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=34.16 E-value=1.8e+02 Score=24.67 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=42.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC-C-------CCCCCCeeEEecCCCCCCcccccccHHHH
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSP-N-------PSNYPHFTFCSIEDSLSETEASTADLVAL 85 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~-~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
+-.|-+++..+.|-....+.+|-.-+-+|.+|.++=- ... . ....+++.+.....++......... +
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQF--lKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~~--~- 77 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQF--LKGGRYSGELKALKKLPNVEIERFGKGFVWRMNEEEE--D- 77 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEES--S--SS--HHHHHHGGGT--EEEE--TT----GGGHHH--H-
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEE--ecCCCCcCHHHHHHhCCeEEEEEcCCcccccCCCcHH--H-
Confidence 3457788888888777666665555556666666522 211 0 1233568888776644332211111 1
Q ss_pred HHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCc
Q 040486 86 LSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATW 125 (460)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~ 125 (460)
...+...+....+.+.. .++|+||.|-..
T Consensus 78 ----~~~~~~~~~~a~~~i~~-------~~~dlvILDEi~ 106 (172)
T PF02572_consen 78 ----RAAAREGLEEAKEAISS-------GEYDLVILDEIN 106 (172)
T ss_dssp ----HHHHHHHHHHHHHHTT--------TT-SEEEEETHH
T ss_pred ----HHHHHHHHHHHHHHHhC-------CCCCEEEEcchH
Confidence 23333334444444433 479999999754
No 332
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=34.04 E-value=1.1e+02 Score=24.17 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=26.3
Q ss_pred cEEE-EEcCCCccCHHH--HHHHHHHHHhCC-CeEEEEeCC
Q 040486 15 RRLI-LFPLPLQGHINP--MLQLANILYSKG-FSITIIHTN 51 (460)
Q Consensus 15 ~~vl-~~~~~~~GH~~p--~l~La~~L~~~G-h~Vt~~~~~ 51 (460)
||+. +++.|-+|+-.. .+.+|++|.+.| ++|.++-..
T Consensus 1 m~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly~ 41 (126)
T COG1553 1 MKYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLYQ 41 (126)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 4554 557788886655 567799999996 677776554
No 333
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=33.84 E-value=60 Score=23.37 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=21.5
Q ss_pred CCeeEEEecCCc--hhHHHHHHHcCCceEEE
Q 040486 114 EPIACLITDATW--YFTQAVAESLKLSRIVL 142 (460)
Q Consensus 114 ~kpD~VI~D~~~--~~~~~~A~~lgiP~v~~ 142 (460)
.+.-.||++... ..+..+|+.+|||++.-
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg 59 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVG 59 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEES
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEe
Confidence 356777777643 66789999999999983
No 334
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.83 E-value=95 Score=24.71 Aligned_cols=35 Identities=29% Similarity=0.509 Sum_probs=27.8
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 17 LILFPLP-LQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 17 vl~~~~~-~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
++++-.| ..-.+...+-+...|.++|.+||+.+++
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCH
Confidence 3444455 4467777889999999999999999997
No 335
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=33.81 E-value=3.9e+02 Score=27.36 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCeeEEEecCCchhHHHHHHHcCCceEEEe
Q 040486 114 EPIACLITDATWYFTQAVAESLKLSRIVLR 143 (460)
Q Consensus 114 ~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~ 143 (460)
.+||++|.+. .+..+|+.+|||++.+.
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 4799999885 35678999999999864
No 336
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=33.81 E-value=66 Score=30.36 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=29.5
Q ss_pred cEEEEEcCC--Cc-cCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 15 RRLILFPLP--LQ-GHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 15 ~~vl~~~~~--~~-GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
|||+|+.-| +. -+......|..+..+|||+|.++.+..
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 688887643 22 455578899999999999999998863
No 337
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=33.80 E-value=95 Score=26.48 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=24.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEEEeC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFS--ITIIHT 50 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~--Vt~~~~ 50 (460)
|||+|+.+++. ..+..+.++|.+++|+ +.++.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 79999976555 4566678899999997 555444
No 338
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=33.33 E-value=64 Score=30.46 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=24.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|||+|+..+..+ ++..++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 789998665543 66778889999999877664
No 339
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=33.22 E-value=1e+02 Score=28.50 Aligned_cols=74 Identities=14% Similarity=0.266 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHH
Q 040486 286 INETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTL 365 (460)
Q Consensus 286 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~ 365 (460)
...+..+.+-+|+.....+.||...++.. -. ++.++++...+-+++.. ||=.+-..+++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-----------a~--------rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYG-----------AN--------RLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCC-----------HH--------HhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 45677788999999999999999988641 11 44555555555566666 77777777777
Q ss_pred HHHhh--CCceeccccc
Q 040486 366 ESICE--GVPMICQPCF 380 (460)
Q Consensus 366 eal~~--GvP~v~~P~~ 380 (460)
-+++. |++.+.=|..
T Consensus 105 ~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 105 LALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHhcCceEEECccc
Confidence 77654 6666555543
No 340
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=33.19 E-value=52 Score=20.75 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 040486 405 ERGEVERTIRRVMTEAEGQEIRVRIMILK 433 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~ 433 (460)
+++.|..||.++.+++ -++++.|++++
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHHC
Confidence 5788999999998663 46777776643
No 341
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.11 E-value=58 Score=32.69 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNS 54 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~ 54 (460)
.+||++...|+.+=+ -...|++.|.++|++|.++.++...
T Consensus 70 ~k~IllgVtGsIAay-ka~~lvr~L~k~G~~V~VvmT~sA~ 109 (475)
T PRK13982 70 SKRVTLIIGGGIAAY-KALDLIRRLKERGAHVRCVLTKAAQ 109 (475)
T ss_pred CCEEEEEEccHHHHH-HHHHHHHHHHhCcCEEEEEECcCHH
Confidence 578888877766544 7899999999999999999987443
No 342
>PRK07236 hypothetical protein; Provisional
Probab=32.93 E-value=81 Score=30.66 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=29.3
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 11 QKKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 11 ~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.+++++|+++-.| .--+.+|..|+++|++|+++-..
T Consensus 3 ~~~~~~ViIVGaG-----~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 3 HMSGPRAVVIGGS-----LGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCeEEEECCC-----HHHHHHHHHHHhCCCCEEEEecC
Confidence 4667899999765 44588999999999999999653
No 343
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=32.92 E-value=2.6e+02 Score=27.84 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
.|||+++-.|++.| +|+++|.+.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 38999988887776 578889888988877744
No 344
>PRK04296 thymidine kinase; Provisional
Probab=32.43 E-value=2.4e+02 Score=24.24 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=30.0
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 15 RRLILFPLP-LQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl~~~~~-~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
..|.+++.+ +.|=..-++.++..+..+|..|.++.+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 356666666 889999999999999999999998854
No 345
>PRK11914 diacylglycerol kinase; Reviewed
Probab=32.28 E-value=93 Score=29.15 Aligned_cols=68 Identities=9% Similarity=0.018 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHH
Q 040486 288 ETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLES 367 (460)
Q Consensus 288 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~ea 367 (460)
.+.+..+.+.+++.+..+........ .... ..+ ........++ +|--||=||+.|+
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~-----------~~~~----------~~a-~~~~~~~~d~--vvv~GGDGTi~ev 80 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDA-----------HDAR----------HLV-AAALAKGTDA--LVVVGGDGVISNA 80 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCH-----------HHHH----------HHH-HHHHhcCCCE--EEEECCchHHHHH
Confidence 45666788888888876544332211 1110 000 0112233466 9999999999998
Q ss_pred H----hhCCceecccc
Q 040486 368 I----CEGVPMICQPC 379 (460)
Q Consensus 368 l----~~GvP~v~~P~ 379 (460)
+ ..++|+-++|.
T Consensus 81 v~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 81 LQVLAGTDIPLGIIPA 96 (306)
T ss_pred hHHhccCCCcEEEEeC
Confidence 7 34789999996
No 346
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=32.16 E-value=51 Score=29.17 Aligned_cols=31 Identities=26% Similarity=0.143 Sum_probs=23.4
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 15 RRLILFP-LPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl~~~-~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
|||.|+- .|..| ..+++.|+++||+|++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 6788874 44444 4688999999999998754
No 347
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=32.04 E-value=2.1e+02 Score=28.42 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILY-SKGFSITIIHTNFNSP 55 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~-~~Gh~Vt~~~~~~~~~ 55 (460)
+-.|+++..++.|-..-...||..|. ++|..|.+++.+.+.+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 34456667778899999999999997 5899999999986554
No 348
>PRK13054 lipid kinase; Reviewed
Probab=31.98 E-value=1.9e+02 Score=26.97 Aligned_cols=81 Identities=14% Similarity=-0.021 Sum_probs=0.0
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCC
Q 040486 273 KSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPAT 352 (460)
Q Consensus 273 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~ 352 (460)
+.+.+|--|... ....+..++..+.+.+..+.+..... .++..+-. +.......++
T Consensus 4 ~~~~~i~N~~~~--~~~~~~~~~~~l~~~g~~~~v~~t~~-------~~~a~~~a---------------~~~~~~~~d~ 59 (300)
T PRK13054 4 PKSLLILNGKSA--GNEELREAVGLLREEGHTLHVRVTWE-------KGDAARYV---------------EEALALGVAT 59 (300)
T ss_pred ceEEEEECCCcc--chHHHHHHHHHHHHcCCEEEEEEecC-------CCcHHHHH---------------HHHHHcCCCE
Q ss_pred cccccccCchhHHHHHhh--------CCceecccc
Q 040486 353 GGFWTHCGWNSTLESICE--------GVPMICQPC 379 (460)
Q Consensus 353 ~~~I~HgG~gs~~eal~~--------GvP~v~~P~ 379 (460)
+|.-||=||++|++.. .+|+-++|.
T Consensus 60 --vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 60 --VIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred --EEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
No 349
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.95 E-value=86 Score=25.00 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=28.0
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHc-C-CCCEEEEEcC
Q 040486 273 KSVIYVSFGSIAAINETEFLEVAWGLAN-S-KVPFLWVVRP 311 (460)
Q Consensus 273 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~-~~~~i~~~~~ 311 (460)
+.+++++|||......+.+..+.+.+++ . ++.+-|.+..
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 3689999999887555667778877754 3 4577777753
No 350
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=31.88 E-value=63 Score=32.49 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=36.4
Q ss_pred ccCCCcccccccCchhHHHHHhh----CCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhcc
Q 040486 348 AHPATGGFWTHCGWNSTLESICE----GVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTE 419 (460)
Q Consensus 348 ~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+|+ +|+=||=||+..|... ++|++.+-. . -+|.. .+++.+++.+++.+++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~-------------G-~LGFL--t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSM-------------G-SLGFM--TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC-------------C-Cccee--cccCHHHHHHHHHHHHcC
Confidence 45777 9999999999999774 457665321 0 12321 145777888888888765
No 351
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=31.55 E-value=4.1e+02 Score=29.51 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
...|++++..+. -...+++.|.+-|-+|..+++.
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~ 352 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQ 352 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCC
Confidence 457888887553 3567888999999999876653
No 352
>PRK12342 hypothetical protein; Provisional
Probab=31.47 E-value=87 Score=28.55 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=24.4
Q ss_pred CeeEEEecCCc------hhHHHHHHHcCCceEEEecc
Q 040486 115 PIACLITDATW------YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 115 kpD~VI~D~~~------~~~~~~A~~lgiP~v~~~~~ 145 (460)
.||+|++...+ --+..+|+.||+|++.+...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 49999986644 23688999999999997654
No 353
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=31.44 E-value=1e+02 Score=26.04 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
....+|++++.++ ..--=.+.+|+.|.++|++|+++..
T Consensus 23 ~~~~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 23 PKGPRVLILCGPG-NNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CTT-EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEEEE
Confidence 3467888888654 2223378899999999999999443
No 354
>PRK13604 luxD acyl transferase; Provisional
Probab=31.27 E-value=1e+02 Score=29.00 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIH 49 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~ 49 (460)
++.+++++.+|..++-.-+..+|+.|.++|..|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3456777888877887779999999999999998774
No 355
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=31.23 E-value=76 Score=24.98 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
.+..+|+++++|+. +...+..++.|.+.|.+++++..
T Consensus 7 ~~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 7 REGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp ESSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eCCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 34568899998877 46679999999999999999865
No 356
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=31.21 E-value=78 Score=26.56 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=22.0
Q ss_pred cccccccCch------hHHHHHhhCCceecccc
Q 040486 353 GGFWTHCGWN------STLESICEGVPMICQPC 379 (460)
Q Consensus 353 ~~~I~HgG~g------s~~eal~~GvP~v~~P~ 379 (460)
+++++|+|-| .+.+|...++|+|++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3488888854 78899999999999864
No 357
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=31.18 E-value=1.5e+02 Score=27.79 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSP 55 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~ 55 (460)
+-.|.+.-.|+-|--.-.=.|.+.|.++||.|-++.-++..+
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 457778888999999999999999999999999998765443
No 358
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=31.18 E-value=69 Score=28.37 Aligned_cols=33 Identities=9% Similarity=0.000 Sum_probs=24.5
Q ss_pred CCeeEEEecCCc--hhHHHHHHHcCCceEEEeccc
Q 040486 114 EPIACLITDATW--YFTQAVAESLKLSRIVLRTNS 146 (460)
Q Consensus 114 ~kpD~VI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 146 (460)
.+||+||..... .....-....++|++.+....
T Consensus 59 l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 59 LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 479999988766 455667778899999987764
No 359
>PLN02778 3,5-epimerase/4-reductase
Probab=31.13 E-value=75 Score=29.66 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=24.7
Q ss_pred ccCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 040486 8 HIHQKKGRRLILFPLPLQGHINPMLQLANILYSKGFSITII 48 (460)
Q Consensus 8 ~~~~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~ 48 (460)
..++...|||+++- +.|.+- -.|++.|.++||+|++.
T Consensus 3 ~~~~~~~~kiLVtG--~tGfiG--~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 3 GTAGSATLKFLIYG--KTGWIG--GLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCCCCeEEEEC--CCCHHH--HHHHHHHHhCCCEEEEe
Confidence 34455568988764 334333 35788899999999753
No 360
>PRK11519 tyrosine kinase; Provisional
Probab=31.06 E-value=4.1e+02 Score=28.51 Aligned_cols=117 Identities=12% Similarity=0.100 Sum_probs=66.1
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC------CCCCeeEEec----------C---CCC
Q 040486 14 GRRLILFPL--PLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPS------NYPHFTFCSI----------E---DSL 72 (460)
Q Consensus 14 ~~~vl~~~~--~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~------~~~g~~~~~~----------~---~~~ 72 (460)
+.|++++++ |+-|--.-...||..|+..|++|.++-.+...+... ...|+.-.-. + +++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 456766654 566888889999999999999999996653322111 0012110000 0 000
Q ss_pred ---CCcccccccHHHHHHHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCc----hhHHHHHHHcCCceEEEecc
Q 040486 73 ---SETEASTADLVALLSLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATW----YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 73 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~----~~~~~~A~~lgiP~v~~~~~ 145 (460)
|.+ ....++.+++ ....+.++++.+. .++|.||.|.-- .-+..+|...+...+++...
T Consensus 605 ~~lp~g-~~~~~~~ell------~s~~~~~ll~~l~--------~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr~~ 669 (719)
T PRK11519 605 DLIPRG-QVPPNPSELL------MSERFAELVNWAS--------KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYA 669 (719)
T ss_pred EEEeCC-CCCCCHHHHh------hHHHHHHHHHHHH--------hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEeCC
Confidence 000 0112222222 1234566677776 479999999732 34567888888877775543
No 361
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=31.05 E-value=1.2e+02 Score=27.12 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=33.5
Q ss_pred EEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC
Q 040486 18 ILF-PLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNP 57 (460)
Q Consensus 18 l~~-~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~ 57 (460)
.|+ +=|+-|-.--.+.||.+|+++|-.|+++=.+++.+..
T Consensus 5 tf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 5 TFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 344 3468899999999999999999999999988777653
No 362
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=31.01 E-value=53 Score=28.89 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=21.5
Q ss_pred CCeeEEEecCCchh-------HHHHHHHcCCceEEEecc
Q 040486 114 EPIACLITDATWYF-------TQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 114 ~kpD~VI~D~~~~~-------~~~~A~~lgiP~v~~~~~ 145 (460)
..||+|+.|..... |..+...+++|+|.+.=+
T Consensus 92 ~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~ 130 (208)
T cd06559 92 TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEcc
Confidence 47999999986532 233445567888887543
No 363
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=30.60 E-value=3.2e+02 Score=22.78 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHH
Q 040486 286 INETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTL 365 (460)
Q Consensus 286 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~ 365 (460)
..++.+.++++..+..+.++++...+.. ..||.-+. ...+.-.| .-|-- .-.-+|..++.
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~AG~a-------a~Lpgvva----------~~t~~PVI-gvP~~--~~~l~G~daLl 96 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAGAGGA-------AHLPGMVA----------ALTPLPVI-GVPVP--SKALSGLDSLL 96 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCcc-------chhHHHHH----------hccCCCEE-EecCC--ccCCCCHHHHH
Confidence 4567777778777777888888877652 44665442 22211111 11100 01347888898
Q ss_pred HHHh--hCCceeccccccchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHH
Q 040486 366 ESIC--EGVPMICQPCFGDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRV 416 (460)
Q Consensus 366 eal~--~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~l 416 (460)
..+. .|+|+-.+ ..|...||....-. +- .++...|.+.+++.
T Consensus 97 S~vqmP~gvpvatv--~I~~~~nAa~~Aaq------Il-~~~d~~l~~kl~~~ 140 (156)
T TIGR01162 97 SIVQMPSGVPVATV--AIGNAGNAALLAAQ------IL-GIKDPELAEKLKEY 140 (156)
T ss_pred HHhcCCCCCeeEEE--EcCChhHHHHHHHH------HH-cCCCHHHHHHHHHH
Confidence 8888 79995443 45677888876654 11 35666777777544
No 364
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=30.56 E-value=64 Score=22.36 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 040486 31 MLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 31 ~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
-+..|..|+++|++|+++-..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 467899999999999999664
No 365
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=30.41 E-value=3.6e+02 Score=25.45 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCcc---C--HHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHH
Q 040486 14 GRRLILFPLPLQG---H--INPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSL 88 (460)
Q Consensus 14 ~~~vl~~~~~~~G---H--~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (460)
+..|++-|..+.| + ..-+.+|++.|.+.|.+|.+++++...+.... +.- ..+...
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~---i~~-~~~~~~---------------- 233 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNE---IEA-LLPGEL---------------- 233 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHH---HHH-hCCccc----------------
Confidence 3456666654333 2 23588999999988999988877532221110 000 000000
Q ss_pred HHHhc-chhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecc
Q 040486 89 LNVQC-VVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 89 ~~~~~-~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 145 (460)
...+ ...+.++..-+. +-|++|+.. .+...+|..+|+|+|.++..
T Consensus 234 -~~l~g~~sL~el~ali~---------~a~l~I~~D--SGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 234 -RNLAGETSLDEAVDLIA---------LAKAVVTND--SGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred -ccCCCCCCHHHHHHHHH---------hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 0000 112333333332 579999885 34678999999999997553
No 366
>CHL00194 ycf39 Ycf39; Provisional
Probab=30.36 E-value=83 Score=29.59 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=23.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|||+++ |+.|.+- ..|+++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG--~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLG--RQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHH--HHHHHHHHHCCCeEEEEEcC
Confidence 577665 4555443 45788999999999988753
No 367
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=30.32 E-value=97 Score=30.91 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=31.5
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 15 RRLILFPLP---LQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 15 ~~vl~~~~~---~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
+|.+|++.| +.|--....+|++.|.+||+.||..=-++
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDP 41 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDP 41 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEeccc
Confidence 577888877 55777889999999999999999985543
No 368
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=30.29 E-value=1.1e+02 Score=27.02 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=26.2
Q ss_pred cEEEEEcCC----CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 15 RRLILFPLP----LQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 15 ~~vl~~~~~----~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
+||+++..+ .-....=++.--..|.++|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 477776531 11234446666788999999999999853
No 369
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.25 E-value=48 Score=28.16 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=21.4
Q ss_pred ccCCCcccccccCchhHHHHHhhCCceecccccc
Q 040486 348 AHPATGGFWTHCGWNSTLESICEGVPMICQPCFG 381 (460)
Q Consensus 348 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 381 (460)
..+++ +|++||...+..... ++|+|-+|..+
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 34566 999999999988888 99999999854
No 370
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.17 E-value=1.8e+02 Score=27.62 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=56.9
Q ss_pred CcEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC-CCeeEEe-cCCCCCCcccccccHHHHH
Q 040486 14 GRRLILFPLPLQG-----HINPMLQLANILYSKGFSITIIHTNFNSPNPSNY-PHFTFCS-IEDSLSETEASTADLVALL 86 (460)
Q Consensus 14 ~~~vl~~~~~~~G-----H~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~ 86 (460)
+..|+|.|..+.| -..-+..|++.|.++|.+|.++.++...+..... .++.... + ...
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l--------~~k------- 239 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVIL--------AGK------- 239 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCcccc--------CCC-------
Confidence 3677777763332 3446899999999999888888876211111100 0111000 0 001
Q ss_pred HHHHHhcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEecc
Q 040486 87 SLLNVQCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 145 (460)
..|.++..-+. ..|++|+... +...+|..+|.|+|.++..
T Consensus 240 --------~sL~e~~~li~---------~a~l~I~~DS--g~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 240 --------TSLEELAALIA---------GADLVIGNDS--GPMHLAAALGTPTIALYGP 279 (334)
T ss_pred --------CCHHHHHHHHh---------cCCEEEccCC--hHHHHHHHcCCCEEEEECC
Confidence 11223222232 4799888753 4668999999999998754
No 371
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=30.17 E-value=1.3e+02 Score=26.95 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=35.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCCCCCCCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKG-FSITIIHTNFNSPNPS 58 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~G-h~Vt~~~~~~~~~~~~ 58 (460)
|||+++-=|+.|-..-..-|+..|.++| ++|.++-.+.+.....
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~ 45 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPE 45 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHH
Confidence 7899999999998887777788888876 9999998875444433
No 372
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=29.92 E-value=77 Score=27.71 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
+..+|+++-.|..| ...++.|.++|++||++++..
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCCC
Confidence 45688888766544 567899999999999998753
No 373
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=29.82 E-value=81 Score=26.38 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=21.4
Q ss_pred CcccccccCch------hHHHHHhhCCceecccc
Q 040486 352 TGGFWTHCGWN------STLESICEGVPMICQPC 379 (460)
Q Consensus 352 ~~~~I~HgG~g------s~~eal~~GvP~v~~P~ 379 (460)
.+++++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33477777744 67889999999999864
No 374
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.79 E-value=1e+02 Score=22.50 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=28.0
Q ss_pred cEEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 15 RRLILFPLPLQ--GHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl~~~~~~~--GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
-+|+++|.... .+..-...++..|.+.|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46888887643 4667789999999999999988543
No 375
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.72 E-value=62 Score=29.95 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred cCCCcccccccCchhHHHHH---hhCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhcc
Q 040486 349 HPATGGFWTHCGWNSTLESI---CEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 349 ~~~~~~~I~HgG~gs~~eal---~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
.+++ +|.-||-||+.+++ ..++|++. ...|..--. .++.+++.+++.+++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~g-----------------In~G~lGFl~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILG-----------------INMGTLGFLTEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEE-----------------EeCCCCCccccCCHHHHHHHHHHHHcC
No 376
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=29.67 E-value=1.1e+02 Score=24.22 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=27.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 18 ILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 18 l~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
+++..|..++-.-+..+++.|+++|..|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 556667777788899999999999999998844
No 377
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.62 E-value=62 Score=30.66 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=26.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|||.++-.|+.| ..+|..|.++||+|+++...
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 688888887776 46788999999999998763
No 378
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=29.59 E-value=1.2e+02 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=23.8
Q ss_pred CeeEEE-ecCCc-hhHHHHHHHcCCceEEEecc
Q 040486 115 PIACLI-TDATW-YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 115 kpD~VI-~D~~~-~~~~~~A~~lgiP~v~~~~~ 145 (460)
-||+++ .|+.. --|..=|..+|||+|.+.-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 399775 66644 55677899999999998765
No 379
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=29.54 E-value=96 Score=28.02 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=28.7
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 16 RLILF-PLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 16 ~vl~~-~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
.|+++ +-|+-|-..-...||..|++.|+.|..+=-
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 34444 567889999999999999999999999844
No 380
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=29.37 E-value=2.7e+02 Score=22.76 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=56.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHH
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSK--GFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNV 91 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (460)
+|+|++.. .-.+=.-++.+++.|.+. |+++ ++ ++.......+..|+.+..+-.+ +. ..+
T Consensus 4 ~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l-~A-T~gTa~~L~~~~Gi~v~~vi~~-~~----gg~---------- 64 (142)
T PRK05234 4 RKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL-YA-TGTTGGLIQEATGLDVTRLLSG-PL----GGD---------- 64 (142)
T ss_pred CcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE-EE-eChHHHHHHhccCCeeEEEEcC-CC----CCc----------
Confidence 56776665 455667789999999999 9995 34 4333333333237776655111 00 000
Q ss_pred hcchhHHHHHHHHhcccccccCCCeeEEEecC--Cch--------hHHHHHHHcCCceEEE
Q 040486 92 QCVVPFRNCLAKLLSNVEEEEKEPIACLITDA--TWY--------FTQAVAESLKLSRIVL 142 (460)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~--~~~--------~~~~~A~~lgiP~v~~ 142 (460)
.++.+.+.. .+.|+||..+ ... .-.-.|-..+||++.-
T Consensus 65 ------~~i~~~I~~-------g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 65 ------QQIGALIAE-------GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred ------hhHHHHHHc-------CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 012222332 4799998844 321 2234688899999983
No 381
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.35 E-value=64 Score=33.41 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=36.2
Q ss_pred cCCCcccccccCchhHHHHHhh----CCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHhcc
Q 040486 349 HPATGGFWTHCGWNSTLESICE----GVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVMTE 419 (460)
Q Consensus 349 ~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
.+++ +|+-||=||+..+... ++|++.+-. |..--- +.+.+++.+++.+++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~-----------------G~lGFL~~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINM-----------------GTVGFLTEFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC-----------------CCCCcCcccCHHHHHHHHHHHHcC
Confidence 4566 9999999999999774 678877433 211111 46677788888887765
No 382
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=29.30 E-value=1.7e+02 Score=27.34 Aligned_cols=110 Identities=13% Similarity=0.002 Sum_probs=58.6
Q ss_pred CCccccCCCCcCCCCCCcccccCccccccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCC
Q 040486 237 IPMFPIGPFHKFFSASSSSLLAHDQTSISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRG 316 (460)
Q Consensus 237 ~p~~~vG~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (460)
.|-+++|....++.. ......++.......+-+++-+-............+..+.++++++|..+++-++.....
T Consensus 96 ~pdrf~~~~~v~p~~----~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~- 170 (293)
T COG2159 96 YPDRFVGFARVDPRD----PEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG- 170 (293)
T ss_pred CCcceeeeeeeCCCc----hHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC-
Confidence 445666666665543 111223344444433333333323333333445557889999999999999977654311
Q ss_pred CccCCCCchhHHhhcCCCCccccccC---hhhhhccCCCcccccccC--chhHHHH
Q 040486 317 AEWIEPLPQGFLETLDGRGHMVKWAP---QQEVLAHPATGGFWTHCG--WNSTLES 367 (460)
Q Consensus 317 ~~~~~~lp~~~~~~~~~~~~v~~~vp---~~~~l~~~~~~~~I~HgG--~gs~~ea 367 (460)
-.. ......| ....-+.+++++++.|+| ..=..|+
T Consensus 171 --------~~~--------~~~~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 171 --------AGL--------EKGHSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred --------ccc--------ccCCCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 100 0001122 233456789999999999 4434444
No 383
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=29.26 E-value=97 Score=24.14 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=29.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 17 LILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 17 vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
++..+.++-.|-....-++..|.++|++|.+...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 4666677889999999999999999999999855
No 384
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=29.17 E-value=2.9e+02 Score=21.76 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=35.8
Q ss_pred cccccCCCCCCeEEEEEccccccC-CHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhH
Q 040486 263 SISWLDKQTPKSVIYVSFGSIAAI-NETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGF 327 (460)
Q Consensus 263 l~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~ 327 (460)
..+|+.. +-+.+|-|-.... .++.+..+++.+.+.+.-.+..-.+.. ...+|+.+
T Consensus 36 ~~~~l~~----gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~------~~~iP~~~ 91 (123)
T PF07905_consen 36 PSDWLRG----GELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRY------LDEIPEEI 91 (123)
T ss_pred HHHhCCC----CeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCc------cccCCHHH
Confidence 4678754 2377787877765 566678889999998876554433322 34577766
No 385
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=29.10 E-value=4.6e+02 Score=26.23 Aligned_cols=107 Identities=10% Similarity=0.128 Sum_probs=59.1
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCcccccccHHHHHHHHHHhcch
Q 040486 17 LILF-PLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDSLSETEASTADLVALLSLLNVQCVV 95 (460)
Q Consensus 17 vl~~-~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
|++. |....|-..-...|++.|+++|++|..+=+... ... +.+ +..-.+.+.. ..+. ++ .-..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d--~~D--~~~--~~~~~g~~~~---~ld~--~~-----~~~~ 65 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPD--YID--PMF--HTQATGRPSR---NLDS--FF-----MSEA 65 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCC--CCC--HHH--HHHHhCCchh---hCCc--cc-----CCHH
Confidence 4444 334568888999999999999999998844210 000 000 0000011100 0000 00 0122
Q ss_pred hHHHHHHHHhcccccccCCCeeEEEecCCc------------hhHHHHHHHcCCceEEEecccH
Q 040486 96 PFRNCLAKLLSNVEEEEKEPIACLITDATW------------YFTQAVAESLKLSRIVLRTNSV 147 (460)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~------------~~~~~~A~~lgiP~v~~~~~~~ 147 (460)
.+.+.+..+. .+.|++|+.... .....+|+.++.|++.+.....
T Consensus 66 ~i~~~~~~~~--------~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 66 QIQECFHRHS--------KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred HHHHHHHHhc--------ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 2333444443 368999966541 2367899999999999987653
No 386
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=29.04 E-value=1.2e+02 Score=24.48 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=30.5
Q ss_pred cEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 15 RRLI-LFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl-~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
+|+. ++.+|..--+.|..-++...+..|++|+++.+
T Consensus 3 ~k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 3 KKLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 4554 44677889999999999999999999999887
No 387
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=28.93 E-value=71 Score=29.10 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=27.0
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLP---LQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~---~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
||..|++.| +.|--.-...|++.|..+|+.|+..=-+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~D 40 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKID 40 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeec
Confidence 578888876 4466677899999999999999998554
No 388
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=28.47 E-value=1.2e+02 Score=25.44 Aligned_cols=38 Identities=11% Similarity=0.288 Sum_probs=30.9
Q ss_pred CcEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLI-LFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl-~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+|+|+ |+-+-..|-..=+-.|++.|.++|+.|..+=+.
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 35554 666667799999999999999999999998664
No 389
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=28.31 E-value=5.6e+02 Score=24.89 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred cccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhH--------------HhhcCCCCccccccChhh-
Q 040486 281 GSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGF--------------LETLDGRGHMVKWAPQQE- 345 (460)
Q Consensus 281 Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~--------------~~~~~~~~~v~~~vp~~~- 345 (460)
.|...-....+..+++++.+.+.++...+..+. ..+.+ ..+-.-.+.+.+|+||.+
T Consensus 187 vslF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~---------~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~y 257 (374)
T PF10093_consen 187 VSLFCYENAALASLLDAWAASPKPVHLLVPEGR---------ALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDY 257 (374)
T ss_pred EEEEeCCchHHHHHHHHHhcCCCCeEEEecCCc---------cHHHHHHHhccccccCccccccCCeEEEECCCCCHHHH
Q ss_pred --hhccCCCcccccccCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC--ccCHHHHHHHHHHHhccch
Q 040486 346 --VLAHPATGGFWTHCGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER--KLERGEVERTIRRVMTEAE 421 (460)
Q Consensus 346 --~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~--~~~~~~l~~~i~~ll~~~~ 421 (460)
+|-.|| +-.==|--|+.-|..+|+|.|=-..--|....-..++.= ++. .--+.....+++++...-.
T Consensus 258 D~LLw~cD---~NfVRGEDSfVRAqwAgkPFvWhIYpQ~d~aHl~KL~AF------L~~y~~~~~~~~~~a~~~~~~~wN 328 (374)
T PF10093_consen 258 DRLLWACD---FNFVRGEDSFVRAQWAGKPFVWHIYPQEDDAHLDKLDAF------LDRYCAGLPPEAAAALRAFWRAWN 328 (374)
T ss_pred HHHHHhCc---cceEecchHHHHHHHhCCCceEecCcCchhhHHHHHHHH------HHHHhhcCCHHHHHHHHHHHHHHh
Q ss_pred H--------HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040486 422 G--------QEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYILS 459 (460)
Q Consensus 422 ~--------~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+ ..+.+....+++..+.--+.--...+.+.++++++++
T Consensus 329 ~~~~~~~~w~~~~~~~~~~~~~a~~w~~~l~~~~dLa~~L~~F~~n 374 (374)
T PF10093_consen 329 GGQDAPDAWQDLLEHLPEWQQHARAWRQQLLAQGDLASNLVQFVEN 374 (374)
T ss_pred CCCCchhhHHHHHHHhHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
No 390
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=28.05 E-value=1.4e+02 Score=23.45 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=27.3
Q ss_pred cEEEEEcCCCccCHHHHH---HHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPML---QLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l---~La~~L~~~Gh~Vt~~~~~ 51 (460)
||+++++....|-...++ .|.++-.++||++.+=+-.
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg 42 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQG 42 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 889888877777766665 4566666789999986554
No 391
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=27.96 E-value=1.9e+02 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCC
Q 040486 32 LQLANILYSKGFSITIIHTNFNS 54 (460)
Q Consensus 32 l~La~~L~~~Gh~Vt~~~~~~~~ 54 (460)
.++|..++++|++|.+++.+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999987544
No 392
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=27.93 E-value=1.8e+02 Score=19.05 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040486 405 ERGEVERTIRRVMTEAE--GQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYI 457 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
|.++|..+|+++|.+.. --+.|+--+.+.+++.. +-.+...++++++...
T Consensus 1 td~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~---dL~~~K~~I~~~I~~~ 52 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTVTKKQVREQLEERFGV---DLSSRKKFIKELIDEF 52 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS-----SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHH
Confidence 46789999999987632 12334434444444422 2224445777666554
No 393
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=27.65 E-value=7e+02 Score=26.06 Aligned_cols=44 Identities=7% Similarity=0.068 Sum_probs=31.2
Q ss_pred HHHHHHHHhcccccccCCCeeEEE----ecCCchhHHHHHHHcCCceEEEeccc
Q 040486 97 FRNCLAKLLSNVEEEEKEPIACLI----TDATWYFTQAVAESLKLSRIVLRTNS 146 (460)
Q Consensus 97 l~~~l~~l~~~~~~~~~~kpD~VI----~D~~~~~~~~~A~~lgiP~v~~~~~~ 146 (460)
+.+.++..... ..+|.+| ||-..+.....|.++++|.|+++-.+
T Consensus 99 IAdsiE~~~~a------~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGp 146 (615)
T PRK12448 99 IADSVEYMVNA------HCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGP 146 (615)
T ss_pred HHHHHHHHhhC------CCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCC
Confidence 34445555443 4699887 45455777889999999999998764
No 394
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=27.49 E-value=1e+02 Score=30.28 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.7
Q ss_pred CCcEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFP--LPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~--~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
++|+|+.+. =|+-|-..-.+.||..|+.+|++|.++=.+
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 356665554 368899999999999999999999998554
No 395
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=27.45 E-value=2.6e+02 Score=27.34 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=57.1
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccc---cccChhhhh
Q 040486 271 TPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMV---KWAPQQEVL 347 (460)
Q Consensus 271 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~---~~vp~~~~l 347 (460)
.+||.|-+|+ ...+..-++.+.+.|++.+|.++..-..+. ...-.|++=..+.+. +.-.+. +-
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~----------GG~aME~Li~~G~~~~VlDlTttE-l~ 248 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGT----------GGRAMERLIREGQFDGVLDLTTTE-LA 248 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCC----------chHHHHHHHHcCCcEEEEECcHHH-HH
Confidence 3567777764 223456778888999999998865433221 011112222222222 333332 22
Q ss_pred ccCCCcccccccCchhHHHHHhhCCceeccccccc
Q 040486 348 AHPATGGFWTHCGWNSTLESICEGVPMICQPCFGD 382 (460)
Q Consensus 348 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~D 382 (460)
.+--- =|..+|-.-+..|...|+|+|+.|-..|
T Consensus 249 d~l~G--Gv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 249 DELFG--GVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred HHHhC--CCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 11111 3678899999999999999999998666
No 396
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=27.44 E-value=64 Score=28.76 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 27 HINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 27 H~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|...|...|++|.++|++|.++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5677899999999999999999775
No 397
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=27.27 E-value=2e+02 Score=26.62 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=21.2
Q ss_pred cCCCcccccccCchhHHHHHhh-----CCcee-cccc
Q 040486 349 HPATGGFWTHCGWNSTLESICE-----GVPMI-CQPC 379 (460)
Q Consensus 349 ~~~~~~~I~HgG~gs~~eal~~-----GvP~v-~~P~ 379 (460)
.+++ +|.-||=||+.|++.. ..|.+ ++|.
T Consensus 57 ~~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 57 GVDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 3566 9999999999996643 34444 4896
No 398
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=27.10 E-value=6.8e+02 Score=25.42 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=66.6
Q ss_pred ccccccChhh---hhccCCCccccc---ccCchhH-HHHHhhCC----ceeccccccchhhhHHHHhhhhcceeeeCCcc
Q 040486 336 HMVKWAPQQE---VLAHPATGGFWT---HCGWNST-LESICEGV----PMICQPCFGDQMVNARYVSDVWKVGLHLERKL 404 (460)
Q Consensus 336 ~v~~~vp~~~---~l~~~~~~~~I~---HgG~gs~-~eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 404 (460)
++.+.+|+.+ +++.+|+ ++. .-|+|-+ .|.++++. |+|.--+.+ |. +. +.-++.+.+ .
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP-~ 433 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP-Y 433 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC-C
Confidence 3446777654 6677888 543 4588855 59999877 554422221 21 33 444666766 7
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040486 405 ERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLISYIL 458 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+.+.++++|.++|+... .+=+++.+++.+.++ .-....=++.+++.|.
T Consensus 434 d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 434 DPVRMDETIYVALAMPK-AEQQARMREMFDAVN-----YYDVQRWADEFLAAVS 481 (487)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 89999999999998622 233555555555554 3455666777777664
No 399
>COG2733 Predicted membrane protein [Function unknown]
Probab=26.97 E-value=1.3e+02 Score=29.00 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=22.8
Q ss_pred Cce-eccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHH
Q 040486 372 VPM-ICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIR 414 (460)
Q Consensus 372 vP~-v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~ 414 (460)
+|+ +.+|++.==|.|=.++-+ |+|..+.. -++++.|.+.++
T Consensus 64 ~PlgipipHTAIIprNKdri~e--~l~~FV~~~fLs~e~i~~Kl~ 106 (415)
T COG2733 64 HPLGIPIPHTAIIPRNKDRIGE--NLGQFVQNNFLSPESINEKLR 106 (415)
T ss_pred cCCCCCCcchhhccccHHHHHH--HHHHHHHHcccChHHHHHHHH
Confidence 576 556766655666666655 45555543 455555544443
No 400
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=26.95 E-value=82 Score=25.83 Aligned_cols=57 Identities=7% Similarity=0.003 Sum_probs=45.4
Q ss_pred cCchhHHHHHhhCCceeccccccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHHHHh
Q 040486 359 CGWNSTLESICEGVPMICQPCFGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIRRVM 417 (460)
Q Consensus 359 gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~ll 417 (460)
|+=-|+.|-+----|+|+=.-..-++++...+.+ |+-....+ ..+.++|..+++.+-
T Consensus 35 ~~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl~~--gl~~A~~KRpVs~e~ie~~v~~ie 92 (156)
T COG1327 35 GERFTTFERAELRPLIVVKKDGRREPFDREKLRR--GLIRACEKRPVSSEQIEEAVSHIE 92 (156)
T ss_pred ccccchhheeeeccceEECcCCCcCCCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3345777877777777777778889999999987 78777877 899999999988774
No 401
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=26.92 E-value=4.5e+02 Score=26.46 Aligned_cols=34 Identities=6% Similarity=0.111 Sum_probs=25.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
.||++.-.|.. .+.+++++.+.|+++..+.++..
T Consensus 3 ~kvLi~~~gei-----a~~ii~a~~~~Gi~~v~v~~~~d 36 (472)
T PRK07178 3 KKILIANRGEI-----AVRIVRACAEMGIRSVAIYSEAD 36 (472)
T ss_pred cEEEEECCcHH-----HHHHHHHHHHcCCeEEEEeCCCc
Confidence 47777744432 57899999999999999887643
No 402
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.73 E-value=96 Score=28.02 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=24.5
Q ss_pred HHHHHhcccccccCCCeeEEEecCCchh--HHH-HHHHcCCceEEEecc
Q 040486 100 CLAKLLSNVEEEEKEPIACLITDATWYF--TQA-VAESLKLSRIVLRTN 145 (460)
Q Consensus 100 ~l~~l~~~~~~~~~~kpD~VI~D~~~~~--~~~-~A~~lgiP~v~~~~~ 145 (460)
.++++.+ .+||+||....... ... +.+.+|+|++.+...
T Consensus 66 n~E~i~~-------l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 66 NYEKIAA-------LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CHHHHHh-------cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 3455555 47999998754322 122 334589999887653
No 403
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.60 E-value=80 Score=29.28 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
.+||.++-.|..| ..+|..|+++||+|+++..
T Consensus 3 ~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~ 34 (287)
T PRK08293 3 IKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDI 34 (287)
T ss_pred ccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeC
Confidence 4689999877777 4578889999999999865
No 404
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.48 E-value=1e+02 Score=21.91 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 040486 29 NPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 29 ~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
...+.+|..|++.|.+||++...
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHHhCcEEEEEecc
Confidence 34689999999999999999875
No 405
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=26.36 E-value=65 Score=30.26 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.|||+++-.|+.|-+. |-.|.++||+|+++...
T Consensus 2 ~m~I~IiGaGaiG~~~-----a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLW-----ACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHH-----HHHHHhCCCCeEEEEec
Confidence 4899999999888654 55688899999999774
No 406
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=26.31 E-value=1e+02 Score=29.34 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=21.6
Q ss_pred hhhccCCCcccccccCchhHHHHHhhCCceeccccc
Q 040486 345 EVLAHPATGGFWTHCGWNSTLESICEGVPMICQPCF 380 (460)
Q Consensus 345 ~~l~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 380 (460)
+-|...+. .++|||+.... +..-|-.++|+-
T Consensus 264 ~~l~~~~~--~~~HgGYD~~~---an~D~N~v~PlD 294 (349)
T PF07355_consen 264 DDLSSDDY--MTIHGGYDPAY---ANEDPNRVFPLD 294 (349)
T ss_pred CCCCccce--EeeccccChhH---hccCCCeeeeHH
Confidence 33555566 99999997654 346788888863
No 407
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=26.27 E-value=8.4e+02 Score=26.24 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=30.4
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 14 GRRLILFPL--PLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 14 ~~~vl~~~~--~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
+.|++.++. |+-|-..-...||..|+..|+.|.++-.+.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 456666654 456777888999999999999999996653
No 408
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=26.22 E-value=4.5e+02 Score=24.38 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 040486 32 LQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 32 l~La~~L~~~Gh~Vt~~~~~ 51 (460)
-.|...|.+.||+||+++-.
T Consensus 12 ~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKGGHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcC
Confidence 46788899999999999875
No 409
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=26.13 E-value=44 Score=30.25 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=22.4
Q ss_pred CCCcccccccCchhHHHHHhh----CCceecccc
Q 040486 350 PATGGFWTHCGWNSTLESICE----GVPMICQPC 379 (460)
Q Consensus 350 ~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~ 379 (460)
+++ +|+-||=||+..++.. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 577 9999999999988664 678877553
No 410
>PRK06756 flavodoxin; Provisional
Probab=26.03 E-value=1.3e+02 Score=24.48 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCccCHHHHHH-HHHHHHhCCCeEEEEeC
Q 040486 14 GRRLILFPLPLQGHINPMLQ-LANILYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~-La~~L~~~Gh~Vt~~~~ 50 (460)
+|||+++=...+||..-+.. +++.|.+.|++|.++..
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 47887776667899888554 67888889999987643
No 411
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=25.98 E-value=1.7e+02 Score=30.38 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=22.1
Q ss_pred CcccccccCch------hHHHHHhhCCceeccc
Q 040486 352 TGGFWTHCGWN------STLESICEGVPMICQP 378 (460)
Q Consensus 352 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 378 (460)
.+++++|.|-| .+++|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34489998865 5789999999999984
No 412
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=25.94 E-value=84 Score=24.03 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 040486 29 NPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 29 ~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
.|.+.|+++|.++|.+|.+.=|
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 7899999999999999888755
No 413
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=25.91 E-value=1.6e+02 Score=25.69 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=30.7
Q ss_pred CCcEEEEEc--CCCccCHHHHHHHHHHHHh-CCCeEEEEeCCC
Q 040486 13 KGRRLILFP--LPLQGHINPMLQLANILYS-KGFSITIIHTNF 52 (460)
Q Consensus 13 ~~~~vl~~~--~~~~GH~~p~l~La~~L~~-~Gh~Vt~~~~~~ 52 (460)
+++|++.++ -|+-|--.-...||.+|++ .|++|.++-...
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 356766554 4677888888999999996 699999986653
No 414
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=25.76 E-value=88 Score=32.37 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=51.0
Q ss_pred EccccccCCH-HHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccCh--hhhh-------c
Q 040486 279 SFGSIAAINE-TEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQ--QEVL-------A 348 (460)
Q Consensus 279 s~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~--~~~l-------~ 348 (460)
|.||.+.... ...+.+++.|++.|.+.+..+.+... ..+-+.+.+ .+++.++. +.| .+.+ .
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~------~~l~dal~~--~~~i~~i~-~~hE~~A~~~Adgyar~ 73 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAI------LPLYDALSQ--STQIRHIL-ARHEQGAGFIAQGMART 73 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCccc------HHHHHHHhc--cCCceEEE-eccHHHHHHHHHHHHHH
Confidence 4455554332 44667889999999998888766531 112222211 11122211 111 1111 1
Q ss_pred cCCCcccccccCch------hHHHHHhhCCceeccc
Q 040486 349 HPATGGFWTHCGWN------STLESICEGVPMICQP 378 (460)
Q Consensus 349 ~~~~~~~I~HgG~g------s~~eal~~GvP~v~~P 378 (460)
....+++++|.|-| .++||...++|+|++.
T Consensus 74 tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 74 TGKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred cCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 12233488887744 7899999999999985
No 415
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=25.60 E-value=1e+02 Score=26.86 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 040486 12 KKGRRLILFPLPLQGHINPMLQLANILYSKGFSITII 48 (460)
Q Consensus 12 ~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~ 48 (460)
.+.++|+++-+|..| ..+|+.|.+.||+|++.
T Consensus 26 l~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 26 LEGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 345789888776444 67899999999999954
No 416
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.53 E-value=1.1e+02 Score=26.02 Aligned_cols=110 Identities=11% Similarity=0.101 Sum_probs=55.0
Q ss_pred cCHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCCCCCCCeeEEecCCC-C------------CC-----cccccccHHHHH
Q 040486 26 GHINPMLQLANIL-YSKGFSITIIHTNFNSPNPSNYPHFTFCSIEDS-L------------SE-----TEASTADLVALL 86 (460)
Q Consensus 26 GH~~p~l~La~~L-~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~-~------------~~-----~~~~~~~~~~~~ 86 (460)
+.+.-.+..|+.| .+.|.+|.+.-.. ......+.-++..+.++.. + .. .+.+.......+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~ 95 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESI 95 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHH
Confidence 5677788899999 7889999887654 2221111123444444310 0 00 000111101122
Q ss_pred HHHHH--------hcchhHHHHHHHHhcccccccCCCeeEEEecCCchhHHHHHHHcCCceEEEeccc
Q 040486 87 SLLNV--------QCVVPFRNCLAKLLSNVEEEEKEPIACLITDATWYFTQAVAESLKLSRIVLRTNS 146 (460)
Q Consensus 87 ~~~~~--------~~~~~l~~~l~~l~~~~~~~~~~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~ 146 (460)
..+.. .....+...++++.. ...|+||.+.. +..+|+.+|+|++.+.++.
T Consensus 96 ~~ll~~~i~~~~~~~~~e~~~~i~~~~~-------~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 96 EELLGVDIKIYPYDSEEEIEAAIKQAKA-------EGVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHHT-EEEEEEESSHHHHHHHHHHHHH-------TT--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred HHHhCCceEEEEECCHHHHHHHHHHHHH-------cCCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 22221 112345556777766 46999999963 4688999999999987753
No 417
>PRK13337 putative lipid kinase; Reviewed
Probab=25.19 E-value=2.3e+02 Score=26.51 Aligned_cols=28 Identities=11% Similarity=-0.089 Sum_probs=22.5
Q ss_pred CCCcccccccCchhHHHHHhh------CCceecccc
Q 040486 350 PATGGFWTHCGWNSTLESICE------GVPMICQPC 379 (460)
Q Consensus 350 ~~~~~~I~HgG~gs~~eal~~------GvP~v~~P~ 379 (460)
.++ +|.-||=||+.|++.. ..|+-++|.
T Consensus 58 ~d~--vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 58 FDL--VIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CCE--EEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 456 9999999999999862 347888996
No 418
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=25.14 E-value=1.1e+02 Score=30.51 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
.+||+++-.|-.| ++.++.|.++|++|++.-....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCC
Confidence 7999999999888 8999999999999999975433
No 419
>PRK05993 short chain dehydrogenase; Provisional
Probab=25.08 E-value=1.4e+02 Score=27.35 Aligned_cols=34 Identities=24% Similarity=0.113 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
+++.++++.++ |-+ -..+|+.|+++|++|..++-
T Consensus 3 ~~k~vlItGas-ggi--G~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 3 MKRSILITGCS-SGI--GAYCARALQSDGWRVFATCR 36 (277)
T ss_pred CCCEEEEeCCC-cHH--HHHHHHHHHHCCCEEEEEEC
Confidence 45666666443 322 35689999999999988765
No 420
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.04 E-value=1.7e+02 Score=20.94 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=27.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 040486 17 LILFPLPLQGHINPMLQLANILYSKGFSITIIH 49 (460)
Q Consensus 17 vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~ 49 (460)
+++...++.|--.-...++..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455566677888889999999999999998886
No 421
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=25.02 E-value=2.3e+02 Score=27.63 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
++|+|+++-.+. ....++.++.+.|++|.++....
T Consensus 11 ~~~~ilIiG~g~-----~~~~~~~a~~~~G~~v~~~~~~~ 45 (395)
T PRK09288 11 SATRVMLLGSGE-----LGKEVAIEAQRLGVEVIAVDRYA 45 (395)
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEeCCC
Confidence 568999985442 34566778888999999887753
No 422
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=25.00 E-value=4e+02 Score=22.11 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=78.3
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcc
Q 040486 275 VIYVSFGSIAAINETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGG 354 (460)
Q Consensus 275 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~ 354 (460)
.|-|-+||.+. -+..+..++.|+.++..+...+-.. +..|+.+ ..|+ .-.....+++
T Consensus 4 ~V~IIMGS~SD--~~~mk~Aa~~L~~fgi~ye~~VvSA--------HRTPe~m----------~~ya---~~a~~~g~~v 60 (162)
T COG0041 4 KVGIIMGSKSD--WDTMKKAAEILEEFGVPYEVRVVSA--------HRTPEKM----------FEYA---EEAEERGVKV 60 (162)
T ss_pred eEEEEecCcch--HHHHHHHHHHHHHcCCCeEEEEEec--------cCCHHHH----------HHHH---HHHHHCCCeE
Confidence 46777898763 4666778888888887654333221 2245433 1111 1122334555
Q ss_pred cccccCchh---HHHHHhhCCceecccccc---chhhhHHHHhhhhcceeeeCC-----ccCHHHHHHHHHHHhccchHH
Q 040486 355 FWTHCGWNS---TLESICEGVPMICQPCFG---DQMVNARYVSDVWKVGLHLER-----KLERGEVERTIRRVMTEAEGQ 423 (460)
Q Consensus 355 ~I~HgG~gs---~~eal~~GvP~v~~P~~~---DQ~~na~~v~~~~G~g~~~~~-----~~~~~~l~~~i~~ll~~~~~~ 423 (460)
+|.-.|.-. =+-|...=+|++.+|... +--+--.-+.+ +-.|+-+.. ..|..-|+..|-. +.| +
T Consensus 61 iIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPVaTvaIg~a~NAallAa~ILa-~~d---~ 135 (162)
T COG0041 61 IIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPVATVAIGNAANAALLAAQILA-IKD---P 135 (162)
T ss_pred EEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhc-CCCCCeeEEEeecchhhHHHHHHHHHc-CCC---H
Confidence 776555311 112344468999999963 33333344555 555543322 4455555555533 356 8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040486 424 EIRVRIMILKEKLNLCL 440 (460)
Q Consensus 424 ~~~~~a~~~~~~~~~~~ 440 (460)
.++++.+++++..++..
T Consensus 136 ~l~~kl~~~r~~~~~~V 152 (162)
T COG0041 136 ELAEKLAEFREAQTEEV 152 (162)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988643
No 423
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=24.96 E-value=50 Score=31.25 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=24.6
Q ss_pred CCeeEEEe-cCCc-hhHHHHHHHcCCceEEEecc
Q 040486 114 EPIACLIT-DATW-YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 114 ~kpD~VI~-D~~~-~~~~~~A~~lgiP~v~~~~~ 145 (460)
..||+||+ |... ..+..=|..+|||+|.+.-+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDT 184 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDT 184 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeC
Confidence 36998765 5433 66778899999999998766
No 424
>PRK08462 biotin carboxylase; Validated
Probab=24.72 E-value=6.7e+02 Score=24.89 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
++.||+++..|.. .+++++++.+.|++|..+.+...
T Consensus 3 ~~k~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~~d 38 (445)
T PRK08462 3 EIKRILIANRGEI-----ALRAIRTIQEMGKEAIAIYSTAD 38 (445)
T ss_pred CCCEEEEECCcHH-----HHHHHHHHHHcCCCEEEEechhh
Confidence 3568888765433 56888888888999988866543
No 425
>PRK13055 putative lipid kinase; Reviewed
Probab=24.61 E-value=2.2e+02 Score=27.13 Aligned_cols=29 Identities=14% Similarity=-0.018 Sum_probs=23.1
Q ss_pred cCCCcccccccCchhHHHHHhh------CCceecccc
Q 040486 349 HPATGGFWTHCGWNSTLESICE------GVPMICQPC 379 (460)
Q Consensus 349 ~~~~~~~I~HgG~gs~~eal~~------GvP~v~~P~ 379 (460)
..++ +|--||=||+.|++.. .+|+-++|.
T Consensus 59 ~~d~--vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 59 GFDL--IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred CCCE--EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 3466 9999999999998743 467888996
No 426
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=24.52 E-value=1.1e+02 Score=30.30 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCc--cC-HHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 14 GRRLILFPLPLQ--GH-INPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 14 ~~~vl~~~~~~~--GH-~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
..||+++|.-+. .+ .....+|++.|.++|.+|.|..+|-
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 578999984433 22 3468899999999999999999963
No 427
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=24.50 E-value=2.7e+02 Score=25.01 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=29.7
Q ss_pred cccccCCCCCCeEEEEEccccccCCHHHHHHHHHHHHcCCCCEEE
Q 040486 263 SISWLDKQTPKSVIYVSFGSIAAINETEFLEVAWGLANSKVPFLW 307 (460)
Q Consensus 263 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 307 (460)
+.+|+. ..+.++||-.-|.........+.+.++++++++.+..
T Consensus 24 ~~~~~~--~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~ 66 (233)
T PRK05282 24 IAELLA--GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTG 66 (233)
T ss_pred HHHHHc--CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 344555 3566999887665544566677788999999987543
No 428
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=24.47 E-value=85 Score=28.02 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=21.7
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 19 LFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 19 ~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
+++..+.|- --.++|++|+++|++|+++..
T Consensus 18 ~itN~SSGg--IG~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 18 SITNHSTGH--LGKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred eecCCcccH--HHHHHHHHHHHCCCEEEEEcC
Confidence 444444443 356889999999999999853
No 429
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=24.45 E-value=1.6e+02 Score=27.07 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.+++-++++..+.|= -.++|+.|+++||+|.+++-.
T Consensus 4 ~~~~~~lITGASsGI---G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 4 MKGKTALITGASSGI---GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCCcEEEEECCCchH---HHHHHHHHHHCCCEEEEEeCc
Confidence 345666676555442 368999999999999999764
No 430
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=24.34 E-value=1.6e+02 Score=27.40 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 040486 29 NPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 29 ~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
..-+.+++.|.++|++|..+..+
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc
Confidence 35688999999999999999876
No 431
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.25 E-value=1.8e+02 Score=24.06 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=45.6
Q ss_pred cccccchhhhHHHHhhhhcceeeeCC--ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 040486 377 QPCFGDQMVNARYVSDVWKVGLHLER--KLERGEVERTIRRVMTEAEGQEIRVRIMILKEKLNLCLIQGGSSYQSLESLI 454 (460)
Q Consensus 377 ~P~~~DQ~~na~~v~~~~G~g~~~~~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 454 (460)
.|..-.+-.+|+.+.+. ++. ....+.|.+.+.+|+.|. +.-+..+.+++..+.+ .+.+..+++.+++
T Consensus 78 yPWt~~~L~aa~el~ee------~eeLs~deke~~~~sl~dL~~d~--PkT~vA~~rfKk~~~K---~g~~v~~~~~dIl 146 (158)
T PF10083_consen 78 YPWTENALEAANELIEE------DEELSPDEKEQFKESLPDLTKDT--PKTKVAATRFKKILSK---AGSIVGDAIRDIL 146 (158)
T ss_pred CchHHHHHHHHHHHHHH------hhcCCHHHHHHHHhhhHHHhhcC--CccHHHHHHHHHHHHH---HhHHHHHHHHHHH
Confidence 56677777777766663 222 234577999999999863 7778888888888886 3444444555444
Q ss_pred H
Q 040486 455 S 455 (460)
Q Consensus 455 ~ 455 (460)
-
T Consensus 147 V 147 (158)
T PF10083_consen 147 V 147 (158)
T ss_pred H
Confidence 3
No 432
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.17 E-value=89 Score=26.29 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=28.0
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEec
Q 040486 23 PLQGHINPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSI 68 (460)
Q Consensus 23 ~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~ 68 (460)
|+.|++- ..++++|.++||+|+.++-....... ..+++....
T Consensus 5 GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~ 46 (183)
T PF13460_consen 5 GATGFVG--RALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQG 46 (183)
T ss_dssp TTTSHHH--HHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEES
T ss_pred CCCChHH--HHHHHHHHHCCCEEEEEecCchhccc--cccccccee
Confidence 5556554 45899999999999999875321111 256776644
No 433
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.12 E-value=1.3e+02 Score=25.58 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=24.7
Q ss_pred HHHHHhcccccccCCCeeEEEecCCchh-HHHHHHHcCCceEEEec
Q 040486 100 CLAKLLSNVEEEEKEPIACLITDATWYF-TQAVAESLKLSRIVLRT 144 (460)
Q Consensus 100 ~l~~l~~~~~~~~~~kpD~VI~D~~~~~-~~~~A~~lgiP~v~~~~ 144 (460)
.++.+.+ .+||+||....... ...--+..|+|++.+..
T Consensus 52 n~E~l~~-------l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 52 NVEKIVA-------LKPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred CHHHHhc-------cCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 3566655 47999998654322 33445678999888654
No 434
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=24.04 E-value=90 Score=29.10 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=24.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
|||.|+-.|..| .++|+.|.++||+|++...
T Consensus 1 m~Ig~IGlG~MG-----~~ma~~L~~~G~~v~v~~~ 31 (292)
T PRK15059 1 MKLGFIGLGIMG-----TPMAINLARAGHQLHVTTI 31 (292)
T ss_pred CeEEEEccCHHH-----HHHHHHHHHCCCeEEEEeC
Confidence 578887666555 6789999999999987643
No 435
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=24.02 E-value=60 Score=30.46 Aligned_cols=37 Identities=24% Similarity=0.174 Sum_probs=30.2
Q ss_pred hhccCCCcccccccCchhHHHHHh----hCCceeccccccc
Q 040486 346 VLAHPATGGFWTHCGWNSTLESIC----EGVPMICQPCFGD 382 (460)
Q Consensus 346 ~l~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~D 382 (460)
.|..-++..+|.=||-||...|.. .++|++.+|-+.|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 455667777999999999977753 7999999998776
No 436
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=24.02 E-value=1.1e+02 Score=29.22 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=23.1
Q ss_pred CeeEEEecCCchhHHHHHHHcCCceEEEec
Q 040486 115 PIACLITDATWYFTQAVAESLKLSRIVLRT 144 (460)
Q Consensus 115 kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~ 144 (460)
+-|++|+... +...+|..+|+|++.++.
T Consensus 261 ~a~l~I~nDT--Gp~HlAaA~g~P~valfG 288 (348)
T PRK10916 261 ACKAIVTNDS--GLMHVAAALNRPLVALYG 288 (348)
T ss_pred hCCEEEecCC--hHHHHHHHhCCCEEEEEC
Confidence 5799998863 467899999999999764
No 437
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=24.00 E-value=5.2e+02 Score=23.47 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=34.2
Q ss_pred hhhhhccCCCcccc--c--ccCchhHHHHHhhCCceecccccc--chhhhHHHHhhhhcceeeeCC
Q 040486 343 QQEVLAHPATGGFW--T--HCGWNSTLESICEGVPMICQPCFG--DQMVNARYVSDVWKVGLHLER 402 (460)
Q Consensus 343 ~~~~l~~~~~~~~I--~--HgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~ 402 (460)
..+++..+|+ +| | +...--+..|+.+|+|+++-|... +|...-.... + ++++.+..
T Consensus 54 l~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa-~-~~~v~~s~ 115 (257)
T PRK00048 54 LEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA-K-KIPVVIAP 115 (257)
T ss_pred HHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-c-CCCEEEEC
Confidence 3456666777 55 2 222456677899999999987643 3333333333 3 77777765
No 438
>PLN02293 adenine phosphoribosyltransferase
Probab=23.72 E-value=2.2e+02 Score=24.50 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCeeEEEecC--CchhHHHHHHHcCCceEEE
Q 040486 114 EPIACLITDA--TWYFTQAVAESLKLSRIVL 142 (460)
Q Consensus 114 ~kpD~VI~D~--~~~~~~~~A~~lgiP~v~~ 142 (460)
.++|+|++=. ....|..+|..+|+|++.+
T Consensus 61 ~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 61 MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 3589888654 2367889999999998874
No 439
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=23.66 E-value=1.2e+02 Score=25.30 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=22.7
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEE
Q 040486 14 GRRLILFPLP--LQGHINPMLQLANILYSKGFSITI 47 (460)
Q Consensus 14 ~~~vl~~~~~--~~GH~~p~l~La~~L~~~Gh~Vt~ 47 (460)
+.+|.++... ..-+..-...|++.|+++||.|..
T Consensus 1 ~~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 1 MVQIGVIGSSNKSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 3577777544 334445577888899999985554
No 440
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=23.62 E-value=61 Score=16.67 Aligned_cols=17 Identities=18% Similarity=0.735 Sum_probs=13.5
Q ss_pred ccccccCCCCCCeEEEE
Q 040486 262 TSISWLDKQTPKSVIYV 278 (460)
Q Consensus 262 ~l~~~l~~~~~~~~v~v 278 (460)
.+.+|.++++++..+|+
T Consensus 4 kCiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 4 KCINWFESRGEERFLYL 20 (22)
T ss_pred EEeehhhhCCceeEEEE
Confidence 37889998888888875
No 441
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=23.59 E-value=1.4e+02 Score=27.86 Aligned_cols=38 Identities=8% Similarity=-0.023 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCc-cCHH---HHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQ-GHIN---PMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~-GH~~---p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
++||++++.+.. =|-. -...+.++|.++||+|.++...
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 358988875533 3333 5688999999999999998654
No 442
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=23.47 E-value=1.9e+02 Score=25.90 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 11 QKKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 11 ~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
+..+|+|+++- +.| .--..+++.|.++||+|+.++-
T Consensus 14 ~~~~~~ilItG--asG--~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 14 NVKTKTVFVAG--ATG--RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cccCCeEEEEC--CCc--HHHHHHHHHHHhCCCEEEEEec
Confidence 34467777664 333 2345788899999999987754
No 443
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=23.45 E-value=1.5e+02 Score=27.03 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.|+|+.=|+-|-..-...||.+|+++|++|.++=-+
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 466776678899999999999999999999999654
No 444
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=23.44 E-value=1.7e+02 Score=27.46 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHH
Q 040486 286 INETEFLEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTL 365 (460)
Q Consensus 286 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~ 365 (460)
...+....+-+++.....+.||.+.++... . ++.++++...+-.++.. ||=.+-..+++
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~-----------~--------rlL~~lD~~~i~~~PK~--fiGySDiTaL~ 108 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDDS-----------N--------ELLPYLDYELIKKNPKI--FIGYSDITALH 108 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccCH-----------h--------hhhhhcCHHHHhhCCCE--EEeccHHHHHH
Confidence 356677779999999899999999886411 1 34455555555555554 66666666666
Q ss_pred HHHh--hCCceecccc
Q 040486 366 ESIC--EGVPMICQPC 379 (460)
Q Consensus 366 eal~--~GvP~v~~P~ 379 (460)
-+++ .|.+.+.=|.
T Consensus 109 ~al~~~~g~~t~hGp~ 124 (308)
T cd07062 109 LAIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHHhcCCeEEECcc
Confidence 6653 2555444444
No 445
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.43 E-value=2.3e+02 Score=21.22 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
...||++++..+.+--.-.-.+=+.+.++|.++.+-..
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 35789988877765333445556666678888776554
No 446
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=23.43 E-value=1.5e+02 Score=28.09 Aligned_cols=39 Identities=13% Similarity=0.337 Sum_probs=33.8
Q ss_pred EEEE--EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 040486 16 RLIL--FPLPLQGHINPMLQLANILYSKGFSITIIHTNFNS 54 (460)
Q Consensus 16 ~vl~--~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~ 54 (460)
-|.+ ++.|+.|-.--.+.|++.|.++|++|.+++-.+..
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 3445 68899999999999999999999999999887654
No 447
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=23.41 E-value=1e+02 Score=24.19 Aligned_cols=31 Identities=3% Similarity=0.178 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC
Q 040486 28 INPMLQLANILYSKGFSITIIHTNFNSPNPS 58 (460)
Q Consensus 28 ~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~ 58 (460)
+.|++.+.-.+.-+||++|++-|.+......
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhcccc
Confidence 5677888888888999999999986665433
No 448
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.38 E-value=4e+02 Score=24.81 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhC
Q 040486 292 LEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEG 371 (460)
Q Consensus 292 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~G 371 (460)
..+++.+++.+.++++..+... -+++.+.+..+.++ +==|+++ .=...|.+....|+.+|
T Consensus 159 ~~~~~~l~~~~~Dlivlagym~--------il~~~~l~~~~~~i----------iNiHpSl--LP~f~G~~~~~~ai~~G 218 (289)
T PRK13010 159 AQILDLIETSGAELVVLARYMQ--------VLSDDLSRKLSGRA----------INIHHSF--LPGFKGARPYHQAHARG 218 (289)
T ss_pred HHHHHHHHHhCCCEEEEehhhh--------hCCHHHHhhccCCc----------eeeCccc--CCCCCCCCHHHHHHHcC
Confidence 3466777777777777766532 26666644333221 2224444 44456889999999999
Q ss_pred Cceeccccc--cchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 040486 372 VPMICQPCF--GDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEGQEIRVRIMILK 433 (460)
Q Consensus 372 vP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~ 433 (460)
+....+-.+ .+..+.+..+.+. - +.+...-|.++|.+.+.++-. .-|-+..+.+.
T Consensus 219 ~k~tG~TvH~v~~~lD~GpII~Q~-~--v~V~~~dt~e~L~~r~~~~E~----~~l~~ai~~~~ 275 (289)
T PRK13010 219 VKLIGATAHFVTDDLDEGPIIEQD-V--ERVDHSYSPEDLVAKGRDVEC----LTLARAVKAFI 275 (289)
T ss_pred CCeEEEEEEEEcCCCCCCCceEEE-E--EEcCCCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 999776653 4555666666553 2 223335688999998887643 36666665554
No 449
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.33 E-value=2e+02 Score=21.98 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
++||+++|..+.+--.-.-..-++..++|-++++-..
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~ 37 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAY 37 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEe
Confidence 4789999988888776666667777778888887554
No 450
>PRK08309 short chain dehydrogenase; Provisional
Probab=23.29 E-value=1.2e+02 Score=25.90 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
|+++++ .++ | +. ..+++.|+++|++|++++-
T Consensus 1 m~vlVt-GGt-G-~g--g~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 1 MHALVI-GGT-G-ML--KRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CEEEEE-CcC-H-HH--HHHHHHHHHCcCEEEEEEC
Confidence 455444 344 5 32 4599999999999998764
No 451
>PRK06270 homoserine dehydrogenase; Provisional
Probab=23.27 E-value=6.3e+02 Score=24.15 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=35.3
Q ss_pred ChhhhhccCCCccccc------ccC---chhHHHHHhhCCceec---cccccchhhhHHHHhhhhcceeee
Q 040486 342 PQQEVLAHPATGGFWT------HCG---WNSTLESICEGVPMIC---QPCFGDQMVNARYVSDVWKVGLHL 400 (460)
Q Consensus 342 p~~~~l~~~~~~~~I~------HgG---~gs~~eal~~GvP~v~---~P~~~DQ~~na~~v~~~~G~g~~~ 400 (460)
...+++..++..++|- |+| ..-+.+||.+|+++|+ -|+...-....+..++. |.....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEE
Confidence 4456776544433554 443 4566899999999999 47754333344445553 666554
No 452
>PRK13059 putative lipid kinase; Reviewed
Probab=23.25 E-value=2.6e+02 Score=26.08 Aligned_cols=29 Identities=10% Similarity=0.008 Sum_probs=23.2
Q ss_pred cCCCcccccccCchhHHHHH---h---hCCceecccc
Q 040486 349 HPATGGFWTHCGWNSTLESI---C---EGVPMICQPC 379 (460)
Q Consensus 349 ~~~~~~~I~HgG~gs~~eal---~---~GvP~v~~P~ 379 (460)
..++ +|.-||=||+.|++ . .++|+-++|.
T Consensus 56 ~~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 56 SYKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 3466 99999999998885 2 3589999997
No 453
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=23.23 E-value=1.6e+02 Score=27.06 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=24.7
Q ss_pred CCeeEEEecCC--chhHHHHHHHcCCceEEEec
Q 040486 114 EPIACLITDAT--WYFTQAVAESLKLSRIVLRT 144 (460)
Q Consensus 114 ~kpD~VI~D~~--~~~~~~~A~~lgiP~v~~~~ 144 (460)
.++|+|++=.. .+.|..+|..+|+|++.+.-
T Consensus 127 ~~iD~VvgvetkGIpLA~avA~~L~vp~vivRK 159 (268)
T TIGR01743 127 REIDAVMTVATKGIPLAYAVASVLNVPLVIVRK 159 (268)
T ss_pred CCCCEEEEEccchHHHHHHHHHHHCCCEEEEEE
Confidence 46999987553 38888999999999999643
No 454
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.20 E-value=1.3e+02 Score=29.58 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=28.8
Q ss_pred CcEEEEEcCC-C--ccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLP-L--QGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~-~--~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
...+.|=|.+ + .||+.|+..|. .|.++||+|+++...
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred eEEEeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 4566777776 3 39999888774 688999999999774
No 455
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=23.17 E-value=1e+02 Score=31.03 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeeEEecC--CCCCCcc
Q 040486 29 NPMLQLANILYSKGFSITIIHTNFNSPNPSNYPHFTFCSIE--DSLSETE 76 (460)
Q Consensus 29 ~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ 76 (460)
.-.+.+|+.|.+.|.++. ++......... .|+.+..+. +++|+..
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e-~GI~v~~Vsk~TgfPEil 57 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAE-AGVPVTEVSDYTGFPEMM 57 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHH-CCCeEEEeecccCCchhh
Confidence 447899999999999994 34333333333 477777765 3555443
No 456
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.13 E-value=1.7e+02 Score=23.60 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+.||++-..+.-+|-.----++..|...|++|......
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 57899999999999999999999999999999987664
No 457
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=23.07 E-value=1.7e+02 Score=24.83 Aligned_cols=38 Identities=32% Similarity=0.522 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
...++++-.++.|-..=..++++++.++|+.|.|+..+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 46788887778888888999999999999999998764
No 458
>PRK07454 short chain dehydrogenase; Provisional
Probab=23.03 E-value=1.5e+02 Score=26.17 Aligned_cols=34 Identities=9% Similarity=0.011 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
+||.++++. +.|. =-..+++.|.++|++|+++.-
T Consensus 5 ~~k~vlItG-~sg~--iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALITG-ASSG--IGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEeC-CCch--HHHHHHHHHHHCCCEEEEEeC
Confidence 466666664 3443 346789999999999998765
No 459
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=22.98 E-value=1.7e+02 Score=27.38 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=31.0
Q ss_pred CCcEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILF-PLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~-~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+..+|+++ +--+.|-..-.+.|.++|.++|.++.|+.|.
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTG 150 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATG 150 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-S
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecC
Confidence 45677777 4557799999999999999999999999996
No 460
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=22.81 E-value=1.2e+02 Score=28.58 Aligned_cols=32 Identities=9% Similarity=-0.079 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKG--FSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~G--h~Vt~~~~~ 51 (460)
+|||+++..+.. + ++++.|.++| ++|..+.+.
T Consensus 1 ~~~vLv~g~~~~-~-----~~~~~l~~~~~g~~vi~~d~~ 34 (326)
T PRK12767 1 MMNILVTSAGRR-V-----QLVKALKKSLLKGRVIGADIS 34 (326)
T ss_pred CceEEEecCCcc-H-----HHHHHHHHhccCCEEEEECCC
Confidence 589999887433 2 7899999984 988888665
No 461
>PLN02686 cinnamoyl-CoA reductase
Probab=22.81 E-value=1.9e+02 Score=27.88 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 11 QKKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 11 ~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
.+++++| +++. +.| .--..|++.|.++||+|+++..
T Consensus 50 ~~~~k~V-LVTG-atG--fIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 50 DAEARLV-CVTG-GVS--FLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCCCCEE-EEEC-Cch--HHHHHHHHHHHHCCCEEEEEeC
Confidence 3444555 4443 334 3346778999999999987654
No 462
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=22.74 E-value=1.6e+02 Score=26.22 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.+++++++.++. .=-..+|++|+++|+.|+++...
T Consensus 4 ~~~~ilITGas~---GiG~aia~~l~~~G~~v~~~~~~ 38 (251)
T COG1028 4 SGKVALVTGASS---GIGRAIARALAREGARVVVAARR 38 (251)
T ss_pred CCCEEEEeCCCC---HHHHHHHHHHHHCCCeEEEEcCC
Confidence 467778887666 34678899999999999888765
No 463
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.73 E-value=1.7e+02 Score=28.72 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 040486 30 PMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 30 p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
--.++|++|.++|++|+++..+
T Consensus 216 ~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 216 MGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHHHCCCEEEEeCCC
Confidence 3578999999999999999764
No 464
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=22.69 E-value=1.5e+02 Score=25.88 Aligned_cols=39 Identities=26% Similarity=0.248 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.+.||.+=..++-|-...|+.=|+.|.++|.+|.+..-+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 357888889999999999999999999999999986554
No 465
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=22.68 E-value=1.1e+02 Score=30.20 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=27.4
Q ss_pred cCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 9 IHQKKGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 9 ~~~~~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.+.+++.||+++-.| +++ +..|+.|...+++||++.+.
T Consensus 5 ~~~~~~~~vVIvGgG-~aG----l~~a~~L~~~~~~ItlI~~~ 42 (424)
T PTZ00318 5 TARLKKPNVVVLGTG-WAG----AYFVRNLDPKKYNITVISPR 42 (424)
T ss_pred ccCCCCCeEEEECCC-HHH----HHHHHHhCcCCCeEEEEcCC
Confidence 344667899988754 444 34578887778999999775
No 466
>PRK06180 short chain dehydrogenase; Provisional
Probab=22.67 E-value=1.6e+02 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=23.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
++.++++. +.|.+ -..+++.|+++|++|+.+...
T Consensus 4 ~~~vlVtG-asggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 4 MKTWLITG-VSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCEEEEec-CCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 35555553 44544 567889999999999988653
No 467
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=22.63 E-value=1.5e+02 Score=28.65 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
++|||+++ |+.|.+ -..|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 46898877 444544 35789999999999998864
No 468
>PRK06924 short chain dehydrogenase; Provisional
Probab=22.62 E-value=1.5e+02 Score=26.48 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=22.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~ 50 (460)
||.++++. +.| .=-..++++|+++|++|++++-
T Consensus 1 ~k~vlItG-asg--giG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 1 MRYVIITG-TSQ--GLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred CcEEEEec-CCc--hHHHHHHHHHHhcCCEEEEEeC
Confidence 45555554 333 2346779999999999988764
No 469
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=22.60 E-value=1.4e+02 Score=26.21 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
+..+|+++-.|..| ..-++.|.+.|++||++++...
T Consensus 8 ~gk~vlVvGgG~va-----~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 8 EGRAVLVVGGGDVA-----LRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHHCCCEEEEEcCCCC
Confidence 34688888765444 6778999999999999988643
No 470
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=22.54 E-value=1.1e+02 Score=30.50 Aligned_cols=38 Identities=13% Similarity=0.285 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCc--c-CHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQ--G-HINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~--G-H~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
..||+++|.-+. . -.....+|++.|.++|.+|.|+.+|
T Consensus 307 A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHP 347 (463)
T PF02233_consen 307 AKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHP 347 (463)
T ss_dssp -SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred cCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 589999984322 2 3457889999999999999999997
No 471
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.51 E-value=2.4e+02 Score=26.02 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
+..|+|+..++-|-..-...||..|++.|+.|.+++.+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3445566666889999999999999999999999988754
No 472
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=22.44 E-value=5.8e+02 Score=24.80 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
..|+++.. +-...+.|++.|.+-|-+|..+...
T Consensus 271 g~~v~i~~-----~~~~~~~l~~~L~elG~~v~~v~~~ 303 (398)
T PF00148_consen 271 GKRVAIYG-----DPDRALGLARFLEELGMEVVAVGCD 303 (398)
T ss_dssp T-EEEEES-----SHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred CceEEEEc-----CchhHHHHHHHHHHcCCeEEEEEEc
Confidence 46777643 3366778999999999999988775
No 473
>PRK05246 glutathione synthetase; Provisional
Probab=22.40 E-value=1.3e+02 Score=28.28 Aligned_cols=39 Identities=5% Similarity=-0.057 Sum_probs=29.6
Q ss_pred CcEEEEEcCC--Cc-cCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 14 GRRLILFPLP--LQ-GHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 14 ~~~vl~~~~~--~~-GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
.|||+|+.-| +. -.......|+++-.++||+|.++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 3788888643 22 344567889999999999999998863
No 474
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=22.29 E-value=1.6e+02 Score=27.01 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=31.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.+|+|+-=|+-|-..-.+.||-+|+++|++|.++--+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 4567776678899999999999999999999998554
No 475
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.27 E-value=1e+02 Score=30.50 Aligned_cols=27 Identities=4% Similarity=-0.063 Sum_probs=22.1
Q ss_pred CCeeEEEecCCchhHHHHHHHcCCceEEEe
Q 040486 114 EPIACLITDATWYFTQAVAESLKLSRIVLR 143 (460)
Q Consensus 114 ~kpD~VI~D~~~~~~~~~A~~lgiP~v~~~ 143 (460)
.+||++|.... ...+|+++|||++.+.
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 47999999874 5568999999998754
No 476
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=22.22 E-value=98 Score=27.23 Aligned_cols=42 Identities=10% Similarity=-0.051 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSPNP 57 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~~~ 57 (460)
.+||++...|+.+= .-...|.+.|. +||+|.++.++...+.+
T Consensus 19 ~k~IllgVtGSIAA-yk~~~lvr~L~-~g~~V~VvmT~~A~~FI 60 (209)
T PLN02496 19 KPRILLAASGSVAA-IKFGNLCHCFS-EWAEVRAVVTKASLHFI 60 (209)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHhc-CCCeEEEEEChhHhhhc
Confidence 57888777766554 44567899997 59999999997544433
No 477
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=22.17 E-value=1.8e+02 Score=30.08 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.2
Q ss_pred cccccccCc------hhHHHHHhhCCceeccc
Q 040486 353 GGFWTHCGW------NSTLESICEGVPMICQP 378 (460)
Q Consensus 353 ~~~I~HgG~------gs~~eal~~GvP~v~~P 378 (460)
+++++|.|- +.+++|.+.++|+|++.
T Consensus 70 gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 70 GVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 348888884 47799999999999985
No 478
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.16 E-value=2.1e+02 Score=24.68 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=22.8
Q ss_pred eEEEecCCc-hhHHHHHHHcCCceEEEecc
Q 040486 117 ACLITDATW-YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 117 D~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 145 (460)
.++|...+. +++..+|+.+|+|.|.+.|.
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 466665544 88888999999999998776
No 479
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.15 E-value=2.8e+02 Score=26.50 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=23.1
Q ss_pred CeeEEEecCCchhHHHHHHHcCCceEEEec
Q 040486 115 PIACLITDATWYFTQAVAESLKLSRIVLRT 144 (460)
Q Consensus 115 kpD~VI~D~~~~~~~~~A~~lgiP~v~~~~ 144 (460)
+-|++|+.. .+...+|..+|+|+|.++.
T Consensus 262 ~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 579999886 4467899999999999764
No 480
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=22.14 E-value=1.5e+02 Score=27.85 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSP 55 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~ 55 (460)
+|||+|+..+.++ ...-++|.++||+|.-+.|....+
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~~~eivaV~Tqpdkp 37 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEAGHEIVAVVTQPDKP 37 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhCCCceEEEEeCCCCc
Confidence 5899999877543 556788888999999887765443
No 481
>CHL00067 rps2 ribosomal protein S2
Probab=22.14 E-value=62 Score=28.97 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=24.8
Q ss_pred CCeeEEEec-CCc-hhHHHHHHHcCCceEEEeccc
Q 040486 114 EPIACLITD-ATW-YFTQAVAESLKLSRIVLRTNS 146 (460)
Q Consensus 114 ~kpD~VI~D-~~~-~~~~~~A~~lgiP~v~~~~~~ 146 (460)
..||+||.. +.. ..+..=|..+|||.|.+..+.
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTN 194 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCC
Confidence 369987654 433 567788999999999987763
No 482
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=22.05 E-value=1.5e+02 Score=26.99 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=24.5
Q ss_pred CeeEEEecCCc------hhHHHHHHHcCCceEEEecc
Q 040486 115 PIACLITDATW------YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 115 kpD~VI~D~~~------~~~~~~A~~lgiP~v~~~~~ 145 (460)
.||+|++...+ --+..+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 49999986644 34578999999999997655
No 483
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=21.88 E-value=4.8e+02 Score=24.29 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCCCEEEEEcCCccCCCccCCCCchhHHhhcCCCCccccccChhhhhccCCCcccccccCchhHHHHHhhC
Q 040486 292 LEVAWGLANSKVPFLWVVRPGLVRGAEWIEPLPQGFLETLDGRGHMVKWAPQQEVLAHPATGGFWTHCGWNSTLESICEG 371 (460)
Q Consensus 292 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v~~~vp~~~~l~~~~~~~~I~HgG~gs~~eal~~G 371 (460)
..+++.+++.+.++++..+... -+|+.+.+..+. .-+==|+++ .=.+.|.+.+..|+.+|
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~~--------il~~~~l~~~~~----------~iiNiHpSL--LP~~rG~~~~~~ai~~G 214 (286)
T PRK13011 155 AQVLDVVEESGAELVVLARYMQ--------VLSPELCRKLAG----------RAINIHHSF--LPGFKGAKPYHQAYERG 214 (286)
T ss_pred HHHHHHHHHhCcCEEEEeChhh--------hCCHHHHhhccC----------CeEEecccc--CCCCCCCcHHHHHHHCC
Confidence 3456667776777777666532 266666433332 122235555 55567899999999999
Q ss_pred Cceeccccc--cchhhhHHHHhhhhcceeeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 040486 372 VPMICQPCF--GDQMVNARYVSDVWKVGLHLERKLERGEVERTIRRVMTEAEGQEIRVRIMILKE 434 (460)
Q Consensus 372 vP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~ 434 (460)
+....+-++ .+..+-+..+.+. -+.+...-|.++|.+.+.++ +- .-|-+..+.+.+
T Consensus 215 ~~~tG~TvH~v~~~~D~G~Ii~Q~---~v~I~~~dt~~~L~~r~~~~-E~---~~~~~ai~~~~~ 272 (286)
T PRK13011 215 VKLIGATAHYVTDDLDEGPIIEQD---VERVDHAYSPEDLVAKGRDV-EC---LTLARAVKAHIE 272 (286)
T ss_pred CCeEEEEEEEEcCCCcCCCcEEEE---EEEcCCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHh
Confidence 998776653 3444555555442 22333456899999998875 33 467666665553
No 484
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=21.85 E-value=1.1e+02 Score=28.23 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=23.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
|||.++-.|..| ..+|..|.++||+|+++...
T Consensus 1 m~I~IIG~G~mG-----~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 1 MKIGIVGLGLIG-----GSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred CeEEEEeecHHH-----HHHHHHHHHCCCEEEEEECC
Confidence 578887554433 56788899999999988653
No 485
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=21.77 E-value=1.4e+02 Score=30.96 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=45.4
Q ss_pred ChhhhhccCCCccccccc-Cch-hHHHHHhhCCceecccccc-chhhhHH--HHhhhhcceeeeCCccCHHHHHHHHHHH
Q 040486 342 PQQEVLAHPATGGFWTHC-GWN-STLESICEGVPMICQPCFG-DQMVNAR--YVSDVWKVGLHLERKLERGEVERTIRRV 416 (460)
Q Consensus 342 p~~~~l~~~~~~~~I~Hg-G~g-s~~eal~~GvP~v~~P~~~-DQ~~na~--~v~~~~G~g~~~~~~~~~~~l~~~i~~l 416 (460)
++.+++..|++++|-+== -|| |=+||++.|||.|..=+.+ -++.+-. .-.. .|+-+.-.+..+.++..+.+.+.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~-~GV~VvdR~~~n~~e~v~~la~~ 540 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEE-YGVYVVDRRDKNYDESVNQLADF 540 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGG-GTEEEE-SSSS-HHHHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcC-CcEEEEeCCCCCHHHHHHHHHHH
Confidence 455666677774443311 133 8899999999999855532 1111110 1122 25554433355555555444444
Q ss_pred h----c-cc-hHHHHHHHHHHHHHHH
Q 040486 417 M----T-EA-EGQEIRVRIMILKEKL 436 (460)
Q Consensus 417 l----~-~~-~~~~~~~~a~~~~~~~ 436 (460)
| . +. ++...|++++++++.+
T Consensus 541 l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 541 LYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 3 2 22 2456777777777654
No 486
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=21.76 E-value=89 Score=26.22 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=32.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCeeEEecC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNSP-NPSNYPHFTFCSIE 69 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~~-~~~~~~g~~~~~~~ 69 (460)
..+|+++-+|++||. -|.-|++.|++|++..-+.... ...+..||+...+.
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~ 55 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVA 55 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHH
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHH
Confidence 478999999999985 4778999999999987754311 11112577766554
No 487
>PRK03094 hypothetical protein; Provisional
Probab=21.73 E-value=86 Score=22.73 Aligned_cols=20 Identities=15% Similarity=0.454 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 040486 31 MLQLANILYSKGFSITIIHT 50 (460)
Q Consensus 31 ~l~La~~L~~~Gh~Vt~~~~ 50 (460)
+-.+.++|.++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 34689999999999987654
No 488
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=21.71 E-value=92 Score=30.36 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFN 53 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~ 53 (460)
++--|++++.|..|+=.-.-.++.+|+.+|+-|..+-+...
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDg 138 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDG 138 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCC
Confidence 66889999999999999999999999999999999988644
No 489
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=21.69 E-value=1.9e+02 Score=25.15 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=31.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 040486 16 RLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNFNS 54 (460)
Q Consensus 16 ~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~~~ 54 (460)
.|+|+-..+-|-..-...||..+..+|..|.+++.+.++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 456666678899999999999999999999999997554
No 490
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.64 E-value=59 Score=31.73 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=31.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
.=|++=--|+.|--.=+++++..|+++| .|.|++.+.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 3455556778899999999999999999 999999974
No 491
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=21.62 E-value=85 Score=22.77 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 040486 31 MLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 31 ~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
+-.+.++|.++||+|+=+...
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred chHHHHHHHHCCCEEEecCCc
Confidence 446889999999999988764
No 492
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.59 E-value=4.1e+02 Score=22.32 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=61.8
Q ss_pred Chhhh-hccCCCcccccccC---chhHHHHHhhCCceecccc--ccchhhhHHHHhhhhcceeeeCC-ccCHHHHHHHHH
Q 040486 342 PQQEV-LAHPATGGFWTHCG---WNSTLESICEGVPMICQPC--FGDQMVNARYVSDVWKVGLHLER-KLERGEVERTIR 414 (460)
Q Consensus 342 p~~~~-l~~~~~~~~I~HgG---~gs~~eal~~GvP~v~~P~--~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~ 414 (460)
.|.++ -.||++.+-+--.| .-|+.|-..+|.=.+. |. .-=+..|+++.++ .|.=..+-- ..+.+.|.++..
T Consensus 64 ~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~r-FgfPfI~aVkg~~k~~Il~a~~ 141 (176)
T COG3195 64 ERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLS-PEEFARFTELNAAYVER-FGFPFIIAVKGNTKDTILAAFE 141 (176)
T ss_pred HHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCC-HHHHHHHHHHHHHHHHh-cCCceEEeecCCCHHHHHHHHH
Confidence 45443 45888833333333 3577787888875543 11 0115689999999 698766654 577888888888
Q ss_pred HHhccchHHHHHHHHHHHHHHHH
Q 040486 415 RVMTEAEGQEIRVRIMILKEKLN 437 (460)
Q Consensus 415 ~ll~~~~~~~~~~~a~~~~~~~~ 437 (460)
+=|.|.+...+++.+.++.+...
T Consensus 142 ~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 142 RRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHhcccHHHHHHHHHHHHHHHHH
Confidence 77787666788888877766544
No 493
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=21.53 E-value=2.4e+02 Score=26.85 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=31.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
..|+++.-|+.|-..-...||..|+++|++|.++..+
T Consensus 32 ~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 32 QIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 4456667778888899999999999999999999665
No 494
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=21.50 E-value=1.7e+02 Score=24.51 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=27.4
Q ss_pred cEEEEEcCCCccCHHHHH-HHHHHHHhCCCeEEEEeC
Q 040486 15 RRLILFPLPLQGHINPML-QLANILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l-~La~~L~~~Gh~Vt~~~~ 50 (460)
||+|++=..-.|...-+. .||..|.++||+|.+.--
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 677777666667777654 469999999999998743
No 495
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.49 E-value=1.3e+02 Score=24.95 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=25.2
Q ss_pred CCeeEEEecCCc----------hhHHHHHHHcCCceEEEecc
Q 040486 114 EPIACLITDATW----------YFTQAVAESLKLSRIVLRTN 145 (460)
Q Consensus 114 ~kpD~VI~D~~~----------~~~~~~A~~lgiP~v~~~~~ 145 (460)
+.||+|++..-+ --+..+|+++|+|++-.+..
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 579999987754 23567899999999997665
No 496
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=21.45 E-value=2e+02 Score=24.88 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=24.0
Q ss_pred CCeeEEEecCC--chhHHHHHHHcCCceEEEec
Q 040486 114 EPIACLITDAT--WYFTQAVAESLKLSRIVLRT 144 (460)
Q Consensus 114 ~kpD~VI~D~~--~~~~~~~A~~lgiP~v~~~~ 144 (460)
.++|+|++=.. .+.|..+|..+|+|++.+.-
T Consensus 49 ~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK 81 (191)
T TIGR01744 49 DGITKIVTIEASGIAPAIMTGLKLGVPVVFARK 81 (191)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEe
Confidence 46999986442 37788899999999999643
No 497
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=21.45 E-value=1.6e+02 Score=28.64 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=32.5
Q ss_pred CCCcEEEEE--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 12 KKGRRLILF--PLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 12 ~~~~~vl~~--~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
.++++|+.+ .=|+-|-..-.+.||..|+.+|+.|.++=.+.
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 345676555 35578999999999999999999999996653
No 498
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=21.38 E-value=1.2e+02 Score=29.36 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 13 KGRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
.+++|+++-.|-.| +..|-.|+++|++|+++-..
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~ 36 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAG 36 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecC
Confidence 46889999877667 99999999999999998654
No 499
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=21.36 E-value=1.6e+02 Score=26.93 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=30.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 040486 15 RRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~ 51 (460)
..|.|+-=|+-|-..-.+.||-+|+++|++|.++--+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3566666678889999999999999999999999554
No 500
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=21.34 E-value=1.7e+02 Score=27.00 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 040486 14 GRRLILFPLPLQGHINPMLQLANILYSKGFSITIIHTNF 52 (460)
Q Consensus 14 ~~~vl~~~~~~~GH~~p~l~La~~L~~~Gh~Vt~~~~~~ 52 (460)
..+++++..|. =+.|++.++++|.++|++|+++-...
T Consensus 98 ~~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r 134 (281)
T PRK06222 98 FGTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGAR 134 (281)
T ss_pred CCeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 35788887543 48999999999999999999875543
Done!