BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040487
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 41/189 (21%)
Query: 3 VINLIQNQLSGHLPSTM------------------GCTLPNL--------ERLTLSHNKL 36
V++L N+ SG LP ++ G LPNL + L L +N
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 37 SGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLN----WLSPVQN---------- 82
+G IP ++ N S+L++L+L +NY SG IP++ G+L L WL+ ++
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNND 142
L T L N L G +PS +SN +L + L G IP+ IG L L +L L NN
Sbjct: 464 TLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 143 LIGTIPKTV 151
G IP +
Sbjct: 523 FSGNIPAEL 531
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 81/203 (39%), Gaps = 62/203 (30%)
Query: 9 NQLSGHLPSTMG-CTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNT 67
N L+G +PS + CT NL ++LS+N+L+G IP I L L L N FSG IP
Sbjct: 473 NDLTGEIPSGLSNCT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 68 FGNLRFLNWLS----------PVQNYLMTKPLAANPLRGFLPSLVSN--------FSASL 109
G+ R L WL P + + +AAN + G + N + +L
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 110 QEFNAYGCE-----------------------------------------LKGSIPQEIG 128
EF E L G IP+EIG
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 129 NLSGLIVLNLFNNDLIGTIPKTV 151
++ L +LNL +ND+ G+IP V
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEV 673
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 111/302 (36%), Gaps = 55/302 (18%)
Query: 4 INLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIP---------------------- 41
++L +N+ +G +P + L L LS N G +P
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 42 ---NSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRG-F 97
++++ L L+L +N FSG +P + NL L+T L++N G
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL---------SASLLTLDLSSNNFSGPI 381
Query: 98 LPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVXXXXXX 157
LP+L N +LQE G IP + N S L+ L+L N L GTIP ++
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 158 XXXXXXXXXXXXSIPYDLCNLKRXXXXXXXXXXXXXXXYLDSNKLSSSIPSSFWNLEYIL 217
IP +L +K LD N L+ IPS N +
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVK-----------TLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 218 QIDXXXXXXXXXXXPHIQKLKQQSLRK--NSQVIGALP-------HLKQLNLSYNRLEGE 268
I I +L+ ++ K N+ G +P L L+L+ N G
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 269 IP 270
IP
Sbjct: 551 IP 552
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 29 LTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKP 88
L +S+N LSG IP I + L LNLG+N SG IP+ G+LR LN L
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD---------- 683
Query: 89 LAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQ 125
L++N L G +P +S + L E + L G IP+
Sbjct: 684 LSSNKLDGRIPQAMSALTM-LTEIDLSNNNLSGPIPE 719
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYF 60
M+ +++ N LSG++P +G ++P L L L HN +SG+IP+ + + L L+L N
Sbjct: 631 MMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 61 SGLIPNTFGNLRFLNWLSPVQNYL 84
G IP L L + N L
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNL 713
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYF 60
+ ++NL N +SG +P +G L L L LS NKL G IP ++ + L ++L N
Sbjct: 655 LFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 61 SGLIP-----NTFGNLRFLN 75
SG IP TF +FLN
Sbjct: 714 SGPIPEMGQFETFPPAKFLN 733
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 4 INLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGL 63
+++ N S +P C+ L+ L +S NKLSG +I ++L LN+ N F G
Sbjct: 202 LDVSSNNFSTGIPFLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 64 IPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSI 123
IP L+ L +LS LA N G +P +S +L + G G++
Sbjct: 260 IPPL--PLKSLQYLS----------LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Query: 124 PQEIGNLSGLIVLNLFNNDLIGTIP 148
P G+ S L L L +N+ G +P
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELP 332
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 41/189 (21%)
Query: 3 VINLIQNQLSGHLPSTM------------------GCTLPNL--------ERLTLSHNKL 36
V++L N+ SG LP ++ G LPNL + L L +N
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 37 SGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLN----WLSPVQN---------- 82
+G IP ++ N S+L++L+L +NY SG IP++ G+L L WL+ ++
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNND 142
L T L N L G +PS +SN +L + L G IP+ IG L L +L L NN
Sbjct: 467 TLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 143 LIGTIPKTV 151
G IP +
Sbjct: 526 FSGNIPAEL 534
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 81/203 (39%), Gaps = 62/203 (30%)
Query: 9 NQLSGHLPSTMG-CTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNT 67
N L+G +PS + CT NL ++LS+N+L+G IP I L L L N FSG IP
Sbjct: 476 NDLTGEIPSGLSNCT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 68 FGNLRFLNWLS----------PVQNYLMTKPLAANPLRGFLPSLVSN--------FSASL 109
G+ R L WL P + + +AAN + G + N + +L
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 110 QEFNAYGCE-----------------------------------------LKGSIPQEIG 128
EF E L G IP+EIG
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 129 NLSGLIVLNLFNNDLIGTIPKTV 151
++ L +LNL +ND+ G+IP V
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEV 676
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 111/302 (36%), Gaps = 55/302 (18%)
Query: 4 INLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIP---------------------- 41
++L +N+ +G +P + L L LS N G +P
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 42 ---NSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRG-F 97
++++ L L+L +N FSG +P + NL L+T L++N G
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL---------SASLLTLDLSSNNFSGPI 384
Query: 98 LPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVXXXXXX 157
LP+L N +LQE G IP + N S L+ L+L N L GTIP ++
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 158 XXXXXXXXXXXXSIPYDLCNLKRXXXXXXXXXXXXXXXYLDSNKLSSSIPSSFWNLEYIL 217
IP +L +K LD N L+ IPS N +
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVK-----------TLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 218 QIDXXXXXXXXXXXPHIQKLKQQSLRK--NSQVIGALP-------HLKQLNLSYNRLEGE 268
I I +L+ ++ K N+ G +P L L+L+ N G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 269 IP 270
IP
Sbjct: 554 IP 555
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 29 LTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKP 88
L +S+N LSG IP I + L LNLG+N SG IP+ G+LR LN L
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD---------- 686
Query: 89 LAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQ 125
L++N L G +P +S + L E + L G IP+
Sbjct: 687 LSSNKLDGRIPQAMSALTM-LTEIDLSNNNLSGPIPE 722
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYF 60
M+ +++ N LSG++P +G ++P L L L HN +SG+IP+ + + L L+L N
Sbjct: 634 MMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 61 SGLIPNTFGNLRFLNWLSPVQNYL 84
G IP L L + N L
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNL 716
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYF 60
+ ++NL N +SG +P +G L L L LS NKL G IP ++ + L ++L N
Sbjct: 658 LFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 61 SGLIP-----NTFGNLRFLN 75
SG IP TF +FLN
Sbjct: 717 SGPIPEMGQFETFPPAKFLN 736
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 4 INLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGL 63
+++ N S +P C+ L+ L +S NKLSG +I ++L LN+ N F G
Sbjct: 205 LDVSSNNFSTGIPFLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 64 IPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSI 123
IP L+ L +LS LA N G +P +S +L + G G++
Sbjct: 263 IPPL--PLKSLQYLS----------LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 124 PQEIGNLSGLIVLNLFNNDLIGTIP 148
P G+ S L L L +N+ G +P
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELP 335
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 12/137 (8%)
Query: 9 NQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTF 68
N L G +P + L L L ++H +SG IP+ + L+TL+ YN SG +P +
Sbjct: 87 NNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 69 GNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIG 128
+L L ++ N + G +P +FS L G IP
Sbjct: 146 SSLPNLVGIT----------FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 129 NLSGLIVLNLFNNDLIG 145
NL+ L ++L N L G
Sbjct: 196 NLN-LAFVDLSRNMLEG 211
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 13/149 (8%)
Query: 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYF 60
++ I N++SG +P + G +T+S N+L+G IP + N + L ++L N
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209
Query: 61 SGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELK 120
G FG+ + + LA N L L + S +L + +
Sbjct: 210 EGDASVLFGSDKNTQKIH----------LAKNSLAFDLGKV--GLSKNLNGLDLRNNRIY 257
Query: 121 GSIPQEIGNLSGLIVLNLFNNDLIGTIPK 149
G++PQ + L L LN+ N+L G IP+
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 94/263 (35%), Gaps = 53/263 (20%)
Query: 64 IPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSI 123
IP++ NL +LN+L Y+ N L G +P ++ + L + G+I
Sbjct: 68 IPSSLANLPYLNFL-----YIG----GINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAI 117
Query: 124 PQEIGNLSGLIVLNLFNNDLIGTIPKTVXXXXXXXXXXXXXXXXXXSIPYDLCNLKRXXX 183
P + + L+ L+ N L GT+P ++ +IP + +
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177
Query: 184 XXXXXXXXXXXXYLDSNKLSSSIPSSFWNLEY--------ILQIDXXXXXXXXXXXPHIQ 235
+ N+L+ IP +F NL +L+ D I
Sbjct: 178 SMT----------ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 236 KLKQQSLR-----------------KNSQVIGALPH-------LKQLNLSYNRLEGEIPI 271
L + SL +N+++ G LP L LN+S+N L GEIP
Sbjct: 228 -LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 272 KGPFRNFSTQSCFGNYALGSPPI 294
G + F + N L P+
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPL 309
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 25 NLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYL 84
NL L L +N++ GT+P + L +LN+ +N G IP GNL+ + V Y
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD----VSAYA 299
Query: 85 MTKPLAANPL 94
K L +PL
Sbjct: 300 NNKCLCGSPL 309
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 6 LIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINA-SKLITLNLGYNYFSGLI 64
L++NQL LP + L NL L L+HN+L ++P + + + L L+L YN L
Sbjct: 116 LVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 65 PNTFGNLRFLNWLSPVQNYLMTKP 88
F L L L QN L + P
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVP 197
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 6 LIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINA-SKLITLNLGYNYFSGLI 64
L NQL LP+ + L NL+ L L N+L ++P+ + + + L LNL +N L
Sbjct: 92 LTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 65 PNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIP 124
F L L L N L + LP V + L++ Y +LK S+P
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQS-----------LPEGVFDKLTQLKDLRLYQNQLK-SVP 197
Query: 125 QEI-GNLSGLIVLNLFNNDLIGTIP 148
+ L+ L + L +N T P
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 15 LPSTMGCTLPNLERLTLSHNKLSG---TIPNSIINASKLITLNLGYNYFSGLIPNTFGNL 71
LP+ + L NLE L ++ NKL + + ++N L L L N L P F +L
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQLKSLPPRVFDSL 132
Query: 72 RFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLS 131
L +LS N L + LP V + SL+E Y +LK L+
Sbjct: 133 TKLTYLSLGYNELQS-----------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 132 GLIVLNLFNNDL 143
L L L NN L
Sbjct: 182 ELKTLKLDNNQL 193
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 25 NLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYL 84
+L + LS+N++S S N ++L+TL L YN + P TF L+ L LS N +
Sbjct: 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Query: 85 MTKPLAA 91
P A
Sbjct: 115 SVVPEGA 121
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 23 LPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82
LP+L +L L N+L+G PN+ AS + L LG N + F L L L+ N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 83 YL 84
+
Sbjct: 113 QI 114
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYF 60
++ + L +NQL+G P+ +++ L L NK+ + +L TLNL N
Sbjct: 56 LVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 61 SGLIPNTFGNLRFLNWLSPVQN-------------YLMTKPLAANPLRGFLPSLVSN 104
S ++P +F +L L L+ N +L K L R PS V +
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD 171
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 23 LPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82
+LE+LTL+ N+++ N+ + L+ LNL N+ + F NL L L N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 83 YL 84
++
Sbjct: 358 HI 359
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 26 LERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGL-IPNTFGNLRFLNWL 77
LE L LSHNKL + +N L L+L +N F L I FGN+ L +L
Sbjct: 71 LEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFL 120
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 6 LIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINA-SKLITLNLGYNYFSGLI 64
L++NQL LP + L NL L L HN+L ++P + + + L L+L N L
Sbjct: 116 LVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 65 PNTFGNLRFLNWLSPVQNYLMTKP 88
F L L LS N L + P
Sbjct: 174 EGVFDKLTQLKQLSLNDNQLKSVP 197
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 25 NLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYL 84
NL+R L+ ++ GT+P L TL+L +N L P L L L N L
Sbjct: 61 NLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 85 MTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDL 143
+ PL A LRG LQE G ELK P + L L+L NNDL
Sbjct: 113 TSLPLGA--LRGL---------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYF 60
++V+NL N L+G S C P ++ L L +N++ +IP + + L LN+ N
Sbjct: 430 ILVLNLSSNMLTG---SVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQL 485
Query: 61 SGLIPNTFGNLRFLNWL 77
+ F L L ++
Sbjct: 486 KSVPDGVFDRLTSLQYI 502
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%)
Query: 24 PNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNY 83
+ E+L L L+ + +KL LNL YN L F +L L L N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 84 LMTKPLA 90
L + PL
Sbjct: 95 LASLPLG 101
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%)
Query: 24 PNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNY 83
+ E+L L L+ + +KL LNL YN L F +L L L N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 84 LMTKPLA 90
L + PL
Sbjct: 95 LASLPLG 101
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81
L LE L LS N+L P S + L L L + + + N F +L+ L L+
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 82 NYLMTKP 88
N LM+ P
Sbjct: 236 NNLMSLP 242
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 23 LPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82
L LE L LS N+L P S + L L L + + + N F +L+ L L+ N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 83 YLMTKP 88
LM+ P
Sbjct: 237 NLMSLP 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,515,721
Number of Sequences: 62578
Number of extensions: 324832
Number of successful extensions: 787
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 114
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)