Query 040487
Match_columns 327
No_of_seqs 216 out of 2857
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7E-32 1.5E-36 272.7 19.8 218 2-231 143-373 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-31 2.7E-36 270.8 20.7 284 1-286 166-485 (968)
3 KOG4194 Membrane glycoprotein 100.0 8E-29 1.7E-33 221.3 7.3 280 2-295 81-410 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.1E-28 4.6E-33 218.7 5.9 283 1-287 104-427 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2.4E-27 5.3E-32 213.7 -3.4 294 3-314 11-352 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 3.7E-26 8.1E-31 206.1 -1.7 274 4-294 83-380 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.9E-25 4.2E-30 191.8 -4.8 99 188-288 433-540 (565)
8 PLN03210 Resistant to P. syrin 99.9 5.1E-21 1.1E-25 195.2 21.4 271 1-294 591-887 (1153)
9 KOG0618 Serine/threonine phosp 99.8 4.1E-23 8.9E-28 193.6 -3.1 304 1-317 47-446 (1081)
10 PLN03210 Resistant to P. syrin 99.8 8.3E-20 1.8E-24 186.3 19.4 257 1-290 613-907 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 5.4E-24 1.2E-28 183.0 -10.1 252 3-287 49-308 (565)
12 PRK15370 E3 ubiquitin-protein 99.8 6.2E-19 1.3E-23 170.0 12.3 236 2-288 181-427 (754)
13 PRK15387 E3 ubiquitin-protein 99.8 1.5E-18 3.3E-23 166.5 14.7 246 2-293 204-462 (788)
14 cd00116 LRR_RI Leucine-rich re 99.8 2.2E-20 4.8E-25 165.9 0.5 247 3-266 2-291 (319)
15 PRK15370 E3 ubiquitin-protein 99.8 2.1E-18 4.6E-23 166.3 12.4 219 1-266 201-428 (754)
16 PRK15387 E3 ubiquitin-protein 99.8 6E-18 1.3E-22 162.5 13.6 218 1-271 224-463 (788)
17 KOG0618 Serine/threonine phosp 99.8 2.4E-20 5.1E-25 175.3 -3.8 243 1-288 243-488 (1081)
18 KOG4237 Extracellular matrix p 99.7 2.8E-19 6.1E-24 153.8 -0.0 183 2-186 70-353 (498)
19 KOG0617 Ras suppressor protein 99.7 6.4E-20 1.4E-24 141.0 -3.7 177 22-226 31-211 (264)
20 KOG4237 Extracellular matrix p 99.7 5E-19 1.1E-23 152.3 0.2 264 10-289 57-359 (498)
21 cd00116 LRR_RI Leucine-rich re 99.7 1.4E-18 3E-23 154.4 2.1 248 28-287 2-289 (319)
22 KOG0617 Ras suppressor protein 99.7 4.7E-19 1E-23 136.3 -5.9 158 3-177 37-194 (264)
23 KOG1909 Ran GTPase-activating 99.4 5E-15 1.1E-19 126.0 -5.5 239 22-286 28-308 (382)
24 KOG0532 Leucine-rich repeat (L 99.4 2.3E-14 5.1E-19 129.0 -2.6 196 4-231 55-251 (722)
25 KOG1909 Ran GTPase-activating 99.3 1.1E-13 2.4E-18 117.9 -1.6 246 1-266 32-311 (382)
26 COG4886 Leucine-rich repeat (L 99.2 2E-11 4.4E-16 111.8 7.7 180 22-231 114-294 (394)
27 COG4886 Leucine-rich repeat (L 99.2 2.3E-11 5E-16 111.4 6.4 179 1-210 118-297 (394)
28 KOG3207 Beta-tubulin folding c 99.2 3.5E-12 7.6E-17 111.8 -0.3 186 22-227 119-314 (505)
29 KOG0532 Leucine-rich repeat (L 99.1 1.5E-12 3.2E-17 117.6 -5.2 188 4-224 80-270 (722)
30 KOG1259 Nischarin, modulator o 99.1 2.1E-11 4.6E-16 102.4 1.7 129 108-267 285-413 (490)
31 PLN03150 hypothetical protein; 99.1 3E-10 6.5E-15 109.3 9.6 106 26-142 420-526 (623)
32 KOG4658 Apoptotic ATPase [Sign 99.1 9.4E-11 2E-15 115.5 6.2 146 3-163 527-676 (889)
33 PF14580 LRR_9: Leucine-rich r 99.1 1.5E-10 3.2E-15 92.4 5.6 125 22-162 17-147 (175)
34 PLN03150 hypothetical protein; 99.1 4.2E-10 9.2E-15 108.3 9.8 118 157-302 420-539 (623)
35 KOG3207 Beta-tubulin folding c 99.1 3.9E-11 8.4E-16 105.4 1.1 210 1-228 123-340 (505)
36 KOG1259 Nischarin, modulator o 99.0 7.2E-11 1.6E-15 99.2 1.6 126 130-287 283-410 (490)
37 PF14580 LRR_9: Leucine-rich r 99.0 3.8E-10 8.2E-15 90.1 4.5 124 1-139 21-148 (175)
38 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.5E-14 71.9 3.4 61 24-84 1-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.8 2.7E-09 5.8E-14 105.4 5.4 105 1-118 547-653 (889)
40 KOG0531 Protein phosphatase 1, 98.8 4.5E-10 9.7E-15 103.4 -1.8 76 192-268 234-320 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 3.1E-09 6.8E-14 69.8 2.4 59 1-60 3-61 (61)
42 COG5238 RNA1 Ran GTPase-activa 98.7 1.6E-09 3.5E-14 89.9 -1.4 94 130-229 156-257 (388)
43 KOG0531 Protein phosphatase 1, 98.7 1.5E-09 3.3E-14 99.8 -1.7 232 23-287 71-316 (414)
44 KOG2120 SCF ubiquitin ligase, 98.6 7E-10 1.5E-14 93.2 -5.5 178 24-224 185-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.6 3.3E-10 7.1E-15 105.4 -9.7 123 133-287 166-290 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.4 1.3E-08 2.9E-13 85.6 -3.4 172 73-264 186-374 (419)
47 KOG1859 Leucine-rich repeat pr 98.2 3.2E-08 7E-13 92.5 -5.4 120 109-245 166-289 (1096)
48 KOG2982 Uncharacterized conser 98.2 1.1E-06 2.4E-11 74.3 4.0 209 25-268 46-264 (418)
49 KOG2982 Uncharacterized conser 98.2 6.8E-07 1.5E-11 75.6 1.6 83 3-86 75-160 (418)
50 PRK15386 type III secretion pr 98.1 1.6E-05 3.5E-10 71.5 9.0 55 22-82 50-104 (426)
51 COG5238 RNA1 Ran GTPase-activa 98.1 1.7E-06 3.7E-11 72.3 2.1 127 153-286 155-313 (388)
52 KOG4579 Leucine-rich repeat (L 98.1 4.6E-07 9.9E-12 68.0 -1.2 103 3-120 31-136 (177)
53 PRK15386 type III secretion pr 98.0 5.4E-05 1.2E-09 68.2 10.0 132 1-165 54-187 (426)
54 PF12799 LRR_4: Leucine Rich r 97.9 9.6E-06 2.1E-10 49.0 3.0 36 25-61 2-37 (44)
55 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 48.9 2.8 37 191-228 2-38 (44)
56 KOG1644 U2-associated snRNP A' 97.8 3.5E-05 7.6E-10 61.8 5.1 103 49-164 43-149 (233)
57 KOG4579 Leucine-rich repeat (L 97.8 1.4E-06 3E-11 65.4 -2.8 73 98-173 68-140 (177)
58 KOG1644 U2-associated snRNP A' 97.7 7.9E-05 1.7E-09 59.8 6.0 126 3-142 23-151 (233)
59 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 5E-10 76.0 2.1 61 18-80 142-203 (699)
60 KOG3665 ZYG-1-like serine/thre 97.5 3.8E-05 8.2E-10 74.6 0.9 18 213-230 249-266 (699)
61 KOG4341 F-box protein containi 97.2 2.7E-05 5.8E-10 69.0 -3.1 270 1-284 140-460 (483)
62 KOG4341 F-box protein containi 97.0 2.3E-05 4.9E-10 69.4 -5.0 246 25-289 139-414 (483)
63 PF13306 LRR_5: Leucine rich r 97.0 0.0025 5.4E-08 48.3 6.6 63 16-80 4-66 (129)
64 KOG2739 Leucine-rich acidic nu 96.9 0.0005 1.1E-08 57.5 2.1 106 22-139 41-151 (260)
65 KOG2739 Leucine-rich acidic nu 96.7 0.0013 2.8E-08 55.1 2.6 85 130-227 42-129 (260)
66 PF13306 LRR_5: Leucine rich r 96.6 0.0066 1.4E-07 45.9 6.3 41 41-82 5-45 (129)
67 KOG2123 Uncharacterized conser 96.6 0.0002 4.3E-09 60.4 -2.6 77 191-269 20-104 (388)
68 KOG4308 LRR-containing protein 96.5 1E-05 2.2E-10 75.2 -12.0 161 3-169 91-276 (478)
69 KOG2123 Uncharacterized conser 96.4 0.00014 2.9E-09 61.4 -4.8 58 23-84 18-75 (388)
70 KOG4308 LRR-containing protein 96.2 1.4E-05 3E-10 74.3 -12.9 194 50-267 89-304 (478)
71 KOG1947 Leucine rich repeat pr 96.1 0.0017 3.7E-08 60.9 0.4 127 2-138 191-328 (482)
72 KOG1947 Leucine rich repeat pr 95.9 0.0013 2.9E-08 61.6 -1.5 111 22-142 186-306 (482)
73 PF00560 LRR_1: Leucine Rich R 95.4 0.0079 1.7E-07 30.1 1.0 18 50-68 2-19 (22)
74 PF00560 LRR_1: Leucine Rich R 94.9 0.011 2.3E-07 29.7 0.6 19 26-45 2-20 (22)
75 PF13504 LRR_7: Leucine rich r 93.5 0.038 8.3E-07 25.7 0.9 13 254-266 2-14 (17)
76 KOG3864 Uncharacterized conser 92.1 0.023 5E-07 46.0 -1.5 19 214-232 151-170 (221)
77 PF13516 LRR_6: Leucine Rich r 90.6 0.066 1.4E-06 27.3 -0.2 13 215-227 3-15 (24)
78 KOG3864 Uncharacterized conser 89.2 0.027 5.9E-07 45.5 -3.5 34 108-141 102-135 (221)
79 smart00369 LRR_TYP Leucine-ric 83.3 1.3 2.7E-05 22.8 2.1 13 132-144 3-15 (26)
80 smart00370 LRR Leucine-rich re 83.3 1.3 2.7E-05 22.8 2.1 13 132-144 3-15 (26)
81 KOG0473 Leucine-rich repeat pr 82.8 0.031 6.7E-07 46.3 -6.2 85 22-120 40-124 (326)
82 KOG3763 mRNA export factor TAP 79.7 0.9 1.9E-05 42.6 1.2 68 188-270 216-287 (585)
83 KOG4242 Predicted myosin-I-bin 79.2 13 0.00028 34.6 8.2 76 191-266 355-453 (553)
84 smart00365 LRR_SD22 Leucine-ri 77.8 1.9 4E-05 22.5 1.6 14 253-266 2-15 (26)
85 KOG0473 Leucine-rich repeat pr 77.8 0.074 1.6E-06 44.2 -5.6 88 43-144 37-124 (326)
86 smart00368 LRR_RI Leucine rich 76.1 1.4 2.9E-05 23.4 0.8 14 215-228 3-16 (28)
87 smart00364 LRR_BAC Leucine-ric 70.5 3 6.6E-05 21.7 1.2 14 253-266 2-15 (26)
88 KOG3763 mRNA export factor TAP 68.5 2.9 6.2E-05 39.4 1.6 65 211-290 215-284 (585)
89 smart00367 LRR_CC Leucine-rich 54.8 9 0.00019 19.6 1.4 12 253-264 2-13 (26)
90 KOG4242 Predicted myosin-I-bin 48.2 1.1E+02 0.0024 28.7 7.9 36 192-228 415-454 (553)
91 TIGR00864 PCC polycystin catio 26.6 45 0.00098 38.2 2.3 32 5-37 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7e-32 Score=272.69 Aligned_cols=218 Identities=37% Similarity=0.556 Sum_probs=105.6
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CEEECcCCcccccCChHHh-cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 3344444444434444443 444444444444444444444444444444444444444444444444444444444444
Q ss_pred CccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEE
Q 040487 82 NYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 82 n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 161 (327)
| .+.+.+|..++.++ +|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 222 n----------~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 222 N----------NLSGEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred C----------ccCCcCChhHhcCC-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 4 44444555555554 555555555555545555555555555555555555544555555555555555
Q ss_pred ccCCccccccCccccCccccchhhc-------------cCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCC
Q 040487 162 LFGNNLQGSIPYDLCNLKRLYSLLL-------------QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSG 228 (327)
Q Consensus 162 l~~n~~~~~~~~~l~~~~~L~~l~l-------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 228 (327)
+++|.+.+.+|..+..+++|+.+.+ ..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 5555555445554444444444433 123445555555555544444444444445555554444444
Q ss_pred CCc
Q 040487 229 SLL 231 (327)
Q Consensus 229 ~~~ 231 (327)
..|
T Consensus 371 ~~p 373 (968)
T PLN00113 371 EIP 373 (968)
T ss_pred eCC
Confidence 333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.3e-31 Score=270.84 Aligned_cols=284 Identities=32% Similarity=0.435 Sum_probs=170.3
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+.++++|++|+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 56788888887777777777 78888888888888777777777778888888888887777777777777788888777
Q ss_pred CCccccc--------------cCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCC
Q 040487 81 QNYLMTK--------------PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGT 146 (327)
Q Consensus 81 ~n~l~~~--------------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 146 (327)
+|.+++. +++.+.+.+.+|..+..+. +|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 7765432 4455555556666666665 666666666666666666666666666666666666655
Q ss_pred CchhccCCCCCCEEEccCCccccccCccccCccccchhhcc-------------CCCCCCEEEcCCCcccccCCccccCc
Q 040487 147 IPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQ-------------GLVSLRELYLDSNKLSSSIPSSFWNL 213 (327)
Q Consensus 147 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~-------------~~~~L~~L~l~~n~l~~~~~~~l~~l 213 (327)
.|..+..+++|+.|++++|.+++.+|..+..++.|+.++++ .+++|+.|++++|.+.+.+|..+..+
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 66666666666666666666665566655555555555441 12344555555555554455444555
Q ss_pred cCCcEEecCCCcCCCCCchhhh---cccccccccC------ccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceeccc
Q 040487 214 EYILQIDLSSNSLSGSLLPHIQ---KLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCF 284 (327)
Q Consensus 214 ~~L~~L~ls~n~l~~~~~~~l~---~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~ 284 (327)
++|+.|++++|.+++..|..+. .|+.+++++| +..+..+++|+.|++++|++.+.+|.....++|+.++++
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls 483 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECc
Confidence 5555555555555444443322 2333344443 222333444444444444444444333333334444444
Q ss_pred CC
Q 040487 285 GN 286 (327)
Q Consensus 285 ~n 286 (327)
+|
T Consensus 484 ~n 485 (968)
T PLN00113 484 RN 485 (968)
T ss_pred CC
Confidence 44
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=8e-29 Score=221.34 Aligned_cols=280 Identities=24% Similarity=0.275 Sum_probs=180.5
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
+.||+++|++. .+-..++.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.+...-.+++..++.||.|||+.
T Consensus 81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 46999999998 555555559999999999999999 7887666677899999999999877778899999999999999
Q ss_pred CccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEE
Q 040487 82 NYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 82 n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 161 (327)
|.++.. |..-+....++++|+++.|.++..-...|..+.+|..|.+++|+++...+..|..+++|+.|+
T Consensus 159 N~is~i-----------~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 159 NLISEI-----------PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred chhhcc-----------cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 988763 211111112677777777777655555666666677777777776644444555666677776
Q ss_pred ccCCccccccCccccCccccchhhc-------------------------------------cCCCCCCEEEcCCCcccc
Q 040487 162 LFGNNLQGSIPYDLCNLKRLYSLLL-------------------------------------QGLVSLRELYLDSNKLSS 204 (327)
Q Consensus 162 l~~n~~~~~~~~~l~~~~~L~~l~l-------------------------------------~~~~~L~~L~l~~n~l~~ 204 (327)
+..|.|.-.---.|..+++|+.+.+ .+++.|+.|++++|.|..
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence 6666664211234555555555443 234556666666666665
Q ss_pred cCCccccCccCCcEEecCCCcCCCCCchh---hhcccccccccC------ccccCCCCCCCeEeCcCCcceeeCCCC---
Q 040487 205 SIPSSFWNLEYILQIDLSSNSLSGSLLPH---IQKLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPIK--- 272 (327)
Q Consensus 205 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~---l~~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~--- 272 (327)
.-++.+.-+++|++|+|++|.++...+++ +..|+.|.|++| ...|..+.+|++|||.+|.+...+-..
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 55555566666677777776666544333 334555555555 344555666666666666655433222
Q ss_pred -CCCCCcceecccCCCCCCCCCCC
Q 040487 273 -GPFRNFSTQSCFGNYALGSPPIL 295 (327)
Q Consensus 273 -~~~~~L~~l~l~~n~~l~~~p~~ 295 (327)
..+++|+.|.+.|| .++.||+-
T Consensus 388 f~gl~~LrkL~l~gN-qlk~I~kr 410 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGN-QLKSIPKR 410 (873)
T ss_pred hccchhhhheeecCc-eeeecchh
Confidence 33556666666666 45555544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.1e-28 Score=218.67 Aligned_cols=283 Identities=24% Similarity=0.279 Sum_probs=214.2
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|+++++.+|.++ .+|.... ...+|+.|+|.+|.|+..-...+..++.||.|||+.|.+...--..|..-.++++|+|+
T Consensus 104 Lq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 104 LQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred ceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 456666666666 6665554 55566666666666665555556666666666666666653222345555566666666
Q ss_pred CCccccc--------------cCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCC
Q 040487 81 QNYLMTK--------------PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGT 146 (327)
Q Consensus 81 ~n~l~~~--------------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 146 (327)
+|.++.. .++.|+++-.-+..|..++ +|+.|++..|.+...---.|..+++|+.|.+..|++...
T Consensus 182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 182 SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred cccccccccccccccchheeeecccCcccccCHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 6665543 3344444443344556577 999999999988744345678889999999999999877
Q ss_pred CchhccCCCCCCEEEccCCccccccCccccCccccchhhc-------------cCCCCCCEEEcCCCcccccCCccccCc
Q 040487 147 IPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLL-------------QGLVSLRELYLDSNKLSSSIPSSFWNL 213 (327)
Q Consensus 147 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l-------------~~~~~L~~L~l~~n~l~~~~~~~l~~l 213 (327)
-.++|..+.+++.|+++.|.++..-..++..+..|+.|.+ +.+++|++|+|++|.++...+..|..+
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH
Confidence 7778899999999999999998777778888889988887 347899999999999997777889999
Q ss_pred cCCcEEecCCCcCCC---CCchhhhcccccccccC---------ccccCCCCCCCeEeCcCCcceeeCCCC--CCCCCcc
Q 040487 214 EYILQIDLSSNSLSG---SLLPHIQKLKQQSLRKN---------SQVIGALPHLKQLNLSYNRLEGEIPIK--GPFRNFS 279 (327)
Q Consensus 214 ~~L~~L~ls~n~l~~---~~~~~l~~L~~l~l~~~---------~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~L~ 279 (327)
..|+.|+|++|.++. ..+..+.+|++|+|++| ...+.++++|+.|++.||++. .+|.. ..+++|+
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALE 419 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccc
Confidence 999999999998865 44667788999999988 467788999999999999998 67654 7799999
Q ss_pred eecccCCC
Q 040487 280 TQSCFGNY 287 (327)
Q Consensus 280 ~l~l~~n~ 287 (327)
.|++.+|+
T Consensus 420 ~LdL~~Na 427 (873)
T KOG4194|consen 420 HLDLGDNA 427 (873)
T ss_pred eecCCCCc
Confidence 99999996
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.4e-27 Score=213.68 Aligned_cols=294 Identities=21% Similarity=0.289 Sum_probs=187.6
Q ss_pred EEEccCCCCc-ccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 3 VINLIQNQLS-GHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 3 ~L~l~~~~~~-~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
-.|+++|.++ +.+|..+- .|..+++|.+.+.++. .+|..++.+.+|++|.++.|++. .+...++.++.|+.+++..
T Consensus 11 GvDfsgNDFsg~~FP~~v~-qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHDVE-QMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred cccccCCcCCCCcCchhHH-HhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhc
Confidence 3678889887 57888887 8888888888888887 78888888888888888888776 3334455666666666655
Q ss_pred CccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEE
Q 040487 82 NYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 82 n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 161 (327)
|++.. .-+|..++.+. .|..|+++.|.+. ..|..+...+++.+|++++|+|.....+.|.++..|-.||
T Consensus 88 N~LKn---------sGiP~diF~l~-dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 88 NNLKN---------SGIPTDIFRLK-DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred ccccc---------CCCCchhcccc-cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 55432 11455555554 5555555555554 3454555555555555555555532223334444455555
Q ss_pred ccCCccccccCccccCccccchhhc--------------------------------------cCCCCCCEEEcCCCccc
Q 040487 162 LFGNNLQGSIPYDLCNLKRLYSLLL--------------------------------------QGLVSLRELYLDSNKLS 203 (327)
Q Consensus 162 l~~n~~~~~~~~~l~~~~~L~~l~l--------------------------------------~~~~~L~~L~l~~n~l~ 203 (327)
+++|.+. .+|+....+..|+.|.+ ..+.+|+.+|++.|.+.
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 5555443 34443333333333322 33567888899999998
Q ss_pred ccCCccccCccCCcEEecCCCcCCCCC--chhhhcccccccccC-----ccccCCCCCCCeEeCcCCccee-eCCCC-CC
Q 040487 204 SSIPSSFWNLEYILQIDLSSNSLSGSL--LPHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEG-EIPIK-GP 274 (327)
Q Consensus 204 ~~~~~~l~~l~~L~~L~ls~n~l~~~~--~~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~-~~~~~-~~ 274 (327)
.+|+++..+++|+.|++|+|.++... -....++++|++++| |+++..++.|+.|.+.+|+++= -+|++ ++
T Consensus 236 -~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 88999999999999999999887532 234566777777777 7777777777777777776541 24444 66
Q ss_pred CCCcceecccCCCCCCCCCCCCCCCCCCCCCCCccccEEE
Q 040487 275 FRNFSTQSCFGNYALGSPPILQVPPYKEDNGEGTEKAIVL 314 (327)
Q Consensus 275 ~~~L~~l~l~~n~~l~~~p~~~~~~c~~~~~~~~~~~~~~ 314 (327)
+.+|+++...+| .+.-+|.. +-.|............+.
T Consensus 315 L~~Levf~aanN-~LElVPEg-lcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 315 LIQLEVFHAANN-KLELVPEG-LCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred hhhhHHHHhhcc-ccccCchh-hhhhHHHHHhccccccee
Confidence 777777777666 46666665 555666555544444433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3.7e-26 Score=206.10 Aligned_cols=274 Identities=28% Similarity=0.360 Sum_probs=170.2
Q ss_pred EEccCCCCc-ccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 4 INLIQNQLS-GHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 4 L~l~~~~~~-~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
+++..|++. .-+|..++ .+..|.+||+++|++. ..|..+....++-+|+|++|++.++.-+.|-+++.|-.||+++|
T Consensus 83 v~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 334444443 23555555 5666666666666665 55555555555666666666655322233455566666666666
Q ss_pred ccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCccc-CCCchhccCCCCCCEEE
Q 040487 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLI-GTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~ 161 (327)
++.. +|..+..+. .|++|.+++|.+...--..+-.+++|++|.+++.+-+ ..+|..+..+.+|..+|
T Consensus 161 rLe~-----------LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 161 RLEM-----------LPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred hhhh-----------cCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 5544 666666666 7777777777654221112223334444444443221 23344444444444444
Q ss_pred ccCCccccccCccccCccccchhhcc------------CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCC-
Q 040487 162 LFGNNLQGSIPYDLCNLKRLYSLLLQ------------GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSG- 228 (327)
Q Consensus 162 l~~n~~~~~~~~~l~~~~~L~~l~l~------------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~- 228 (327)
++.|.+. .+|+.+.++..|+.|+++ .+.+|+.|+++.|+++ .+|.++..++.|+.|.+.+|+++-
T Consensus 229 lS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 229 LSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred ccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccccc
Confidence 4444444 444444444444444432 2447899999999999 899999999999999999998874
Q ss_pred CCchhhhcccc---cccccC-----ccccCCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCCCCCCCCC
Q 040487 229 SLLPHIQKLKQ---QSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNYALGSPPI 294 (327)
Q Consensus 229 ~~~~~l~~L~~---l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~~l~~~p~ 294 (327)
.+|..+.+|.. +...+| |..+..|+.|+.|.++.|++.+ +|.. .-++.|+.|++..||++-..|+
T Consensus 307 GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCCC
Confidence 46666666544 445665 8999999999999999999984 5554 7788999999999988854443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.9e-25 Score=191.83 Aligned_cols=99 Identities=25% Similarity=0.281 Sum_probs=73.9
Q ss_pred CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccc---cccccC------ccccCCCCCCCeE
Q 040487 188 GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQ---QSLRKN------SQVIGALPHLKQL 258 (327)
Q Consensus 188 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~---l~l~~~------~~~l~~~~~L~~L 258 (327)
.+++|.-|++++|.+. .+|..++.+-.|+.++++.|++. ..|..+-.++. +-.+++ ++.+..|.+|..|
T Consensus 433 ~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 3667777788777776 67777777777888888888765 34555443333 223433 5668999999999
Q ss_pred eCcCCcceeeCCCCCCCCCcceecccCCCC
Q 040487 259 NLSYNRLEGEIPIKGPFRNFSTQSCFGNYA 288 (327)
Q Consensus 259 ~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~ 288 (327)
|+.+|.+...+|..+.|++++.+.++|||+
T Consensus 511 DL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 511 DLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccCCCchhhCChhhccccceeEEEecCCcc
Confidence 999999996555569999999999999984
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=5.1e-21 Score=195.16 Aligned_cols=271 Identities=23% Similarity=0.276 Sum_probs=180.0
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|+.|++.++.+. .+|..+ ...+|+.|+++++.+. .++..+..+++|+.|+++++...+.+|. +..+++|+.|+++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 345555555554 556554 3566666666666665 4555556666777777766554334543 5666677777766
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.. ...+|..+..+. +|+.|++++|.....+|..+ ++++|+.|++++|.....+|. ...+|+.|
T Consensus 666 ~c~~----------L~~lp~si~~L~-~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L 730 (1153)
T PLN03210 666 DCSS----------LVELPSSIQYLN-KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWL 730 (1153)
T ss_pred CCCC----------ccccchhhhccC-CCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCee
Confidence 5532 234677777777 88888888876555666554 677888888888765444443 24578888
Q ss_pred EccCCccccccCccccCccccchhhccC--------------------CCCCCEEEcCCCcccccCCccccCccCCcEEe
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQG--------------------LVSLRELYLDSNKLSSSIPSSFWNLEYILQID 220 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~~--------------------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 220 (327)
++++|.+. .+|..+ .+++|+.|.+.. +++|+.|++++|...+.+|..+..+++|+.|+
T Consensus 731 ~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 731 DLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred ecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 88888876 566543 355555555433 45789999999876668888888999999999
Q ss_pred cCCCcCCCCCchh--hhcccccccccCcc--cc-CCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCCCCCCCCC
Q 040487 221 LSSNSLSGSLLPH--IQKLKQQSLRKNSQ--VI-GALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNYALGSPPI 294 (327)
Q Consensus 221 ls~n~l~~~~~~~--l~~L~~l~l~~~~~--~l-~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~~l~~~p~ 294 (327)
+++|...+.+|.. +++|+.|++++|.. .+ ...++|+.|++++|.+.. +|.. ..+++|+.+++.+|+.+..+|.
T Consensus 809 Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 809 IENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 9988544444443 56778888887721 11 223578888888888874 4433 6678888888888877755554
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=4.1e-23 Score=193.59 Aligned_cols=304 Identities=28% Similarity=0.355 Sum_probs=194.8
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|+.||+++|++. .+|..+. .+.+|+.|+++.|.+. .+|.+..++.+|+++.|..|.+. ..|..+..+++|+.|+++
T Consensus 47 L~~l~lsnn~~~-~fp~~it-~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQIT-LLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eEEeeccccccc-cCCchhh-hHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 577889999887 7888887 7888888888888887 66777778888888888877776 677778888888888888
Q ss_pred CCccccc--------------------------------cCCCCCCcccCchhhhhccccccEEEccCCcccccCCccc-
Q 040487 81 QNYLMTK--------------------------------PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEI- 127 (327)
Q Consensus 81 ~n~l~~~--------------------------------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 127 (327)
+|.+... ++..+.+.+.++.++..+. . .+++.+|.+....-..+
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~-~--~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLT-H--QLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhh-e--eeecccchhhhhhhhhcc
Confidence 8876654 2222233333333333332 1 35555554431000000
Q ss_pred --------------------------------------cCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCcccc
Q 040487 128 --------------------------------------GNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQG 169 (327)
Q Consensus 128 --------------------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 169 (327)
....+|++++++.|+++ .+|+++..+.+|+.+++.+|.++
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~- 277 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV- 277 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-
Confidence 01124555555555555 34466666666666666666664
Q ss_pred ccCccccCccccchhhc------------cCCCCCCEEEcCCCcccccCCccc-cCcc-CCcEEecCCCcCCCCC---ch
Q 040487 170 SIPYDLCNLKRLYSLLL------------QGLVSLRELYLDSNKLSSSIPSSF-WNLE-YILQIDLSSNSLSGSL---LP 232 (327)
Q Consensus 170 ~~~~~l~~~~~L~~l~l------------~~~~~L~~L~l~~n~l~~~~~~~l-~~l~-~L~~L~ls~n~l~~~~---~~ 232 (327)
.+|..+....+|+.+.+ ...+.|++|+|..|++. .+|..+ .... .++.++.+.|.+.... -.
T Consensus 278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~ 356 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEEN 356 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccch
Confidence 55555555555555443 23555666666666666 444432 2222 2455555555544211 12
Q ss_pred hhhcccccccccC------ccccCCCCCCCeEeCcCCcceeeCCCC--CCCCCcceecccCCCCCCCCCCCCCCCCCCCC
Q 040487 233 HIQKLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPIK--GPFRNFSTQSCFGNYALGSPPILQVPPYKEDN 304 (327)
Q Consensus 233 ~l~~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~L~~l~l~~n~~l~~~p~~~~~~c~~~~ 304 (327)
.++.|+.|++.+| ...+.++++|+.|+|++|+++ .+|.. .+++.|+.|+++|| ++.++|+. ++.|...+
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGN-kL~~Lp~t-va~~~~L~ 433 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGN-KLTTLPDT-VANLGRLH 433 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccc-hhhhhhHH-HHhhhhhH
Confidence 3445667777776 456678899999999999998 67776 77888999999999 79999976 78898877
Q ss_pred CCCccccEEEEEE
Q 040487 305 GEGTEKAIVLVLK 317 (327)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (327)
-..+-...+.+.|
T Consensus 434 tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFP 446 (1081)
T ss_pred HHhhcCCceeech
Confidence 7776665555443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=8.3e-20 Score=186.33 Aligned_cols=257 Identities=21% Similarity=0.240 Sum_probs=184.8
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++.++.+. .+|..+. .+++|++|+++++.....+|. ++.+++|++|++++|.....+|..+.++++|+.|+++
T Consensus 613 L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 613 LVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 578999999988 7888876 899999999998865546664 7889999999999988767889999999999999998
Q ss_pred CCc-cccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhc--------
Q 040487 81 QNY-LMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTV-------- 151 (327)
Q Consensus 81 ~n~-l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------- 151 (327)
+|. ++. +|..+ .+. +|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+
T Consensus 690 ~c~~L~~-----------Lp~~i-~l~-sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L 752 (1153)
T PLN03210 690 RCENLEI-----------LPTGI-NLK-SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDEL 752 (1153)
T ss_pred CCCCcCc-----------cCCcC-CCC-CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccc
Confidence 864 322 33332 333 6777777777554444432 345666666666654 333321
Q ss_pred ----------------------cCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCcc
Q 040487 152 ----------------------GGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSS 209 (327)
Q Consensus 152 ----------------------~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~ 209 (327)
...++|+.|++++|.....+|.++.. +++|+.|++++|..-+.+|..
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-----------L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-----------LHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC-----------CCCCCEEECCCCCCcCeeCCC
Confidence 12245666666666554455555544 456888888887533366765
Q ss_pred ccCccCCcEEecCCCcCCCCCchhhhcccccccccC-----ccccCCCCCCCeEeCcCCc-ceeeCCCC-CCCCCcceec
Q 040487 210 FWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNR-LEGEIPIK-GPFRNFSTQS 282 (327)
Q Consensus 210 l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~-l~~~~~~~-~~~~~L~~l~ 282 (327)
+ .+++|+.|++++|......|....+++.|+++++ |..+..+++|+.|++++|+ +. .+|.. ..++.|+.++
T Consensus 822 ~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 822 I-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVD 899 (1153)
T ss_pred C-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeee
Confidence 4 6889999999998655566666678888888877 7788899999999999964 55 44443 6788899999
Q ss_pred ccCCCCCC
Q 040487 283 CFGNYALG 290 (327)
Q Consensus 283 l~~n~~l~ 290 (327)
+.+|..+.
T Consensus 900 l~~C~~L~ 907 (1153)
T PLN03210 900 FSDCGALT 907 (1153)
T ss_pred cCCCcccc
Confidence 99998774
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=5.4e-24 Score=182.98 Aligned_cols=252 Identities=29% Similarity=0.385 Sum_probs=143.8
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
.+.+++|.+. .+-..+. .+..+.++++.+|++. ..|.+++.+..++.++.+.|++. ++|+.++.+..|+.++++.|
T Consensus 49 ~lils~N~l~-~l~~dl~-nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 49 KLILSHNDLE-VLREDLK-NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhccCchh-hccHhhh-cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc
Confidence 3455555555 3444444 5566666666666665 45555666666666666666665 55555666666666666655
Q ss_pred ccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEc
Q 040487 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDL 162 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 162 (327)
.+.. ++++++.+- .++.++..+|.+. ..|.++..+.++..+++.+|++.. .|+..-.++.|+.+|.
T Consensus 125 ~~~e-----------l~~~i~~~~-~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 125 ELKE-----------LPDSIGRLL-DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDC 190 (565)
T ss_pred ceee-----------cCchHHHHh-hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhccc
Confidence 5544 444555444 5555555555554 344455555555555555555552 2222223555555555
Q ss_pred cCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCch---hhhcccc
Q 040487 163 FGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLP---HIQKLKQ 239 (327)
Q Consensus 163 ~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~---~l~~L~~ 239 (327)
..|-+. .+|+.++.+. +|+.|++.+|++. .+| .|.++..|+++.++.|.+.....+ .+..+..
T Consensus 191 ~~N~L~-tlP~~lg~l~-----------~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 191 NSNLLE-TLPPELGGLE-----------SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred chhhhh-cCChhhcchh-----------hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 555554 5555554433 3445555555554 444 445555555555555554321111 2233444
Q ss_pred cccccC-----ccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCC
Q 040487 240 QSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNY 287 (327)
Q Consensus 240 l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~ 287 (327)
|++++| |+.+..+.+|+.||+++|.+++..+..+.+ .|+.+.+.|||
T Consensus 257 LDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 257 LDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 555555 566667788999999999998766666777 89999999997
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=6.2e-19 Score=169.96 Aligned_cols=236 Identities=20% Similarity=0.313 Sum_probs=149.3
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
.+|++++++++ .+|..+. +.|+.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++++
T Consensus 181 ~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 181 TELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred eEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 46888888887 6887664 57889999999888 5666543 58899999988887 5666543 4788888888
Q ss_pred CccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEE
Q 040487 82 NYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 82 n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 161 (327)
|.+.. +|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++. +|..+ .++|+.|+
T Consensus 251 N~L~~-----------LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~ 310 (754)
T PRK15370 251 NRITE-----------LPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLN 310 (754)
T ss_pred CccCc-----------CChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHH
Confidence 87755 554443 27888888888887 4565443 478888888888773 44433 24677788
Q ss_pred ccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchh-hhccccc
Q 040487 162 LFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPH-IQKLKQQ 240 (327)
Q Consensus 162 l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~-l~~L~~l 240 (327)
+++|.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++. +|.. .++|+.|
T Consensus 311 Ls~N~Lt-~LP~~l~-------------~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp~~L~~L 372 (754)
T PRK15370 311 VQSNSLT-ALPETLP-------------PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV-LPETLPPTITTL 372 (754)
T ss_pred hcCCccc-cCCcccc-------------ccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc-CChhhcCCcCEE
Confidence 8888777 4554332 24556666666665 3443332 456666666666553 2222 2345555
Q ss_pred ccccC-----ccccCCCCCCCeEeCcCCcceeeCCCC-----CCCCCcceecccCCCC
Q 040487 241 SLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIK-----GPFRNFSTQSCFGNYA 288 (327)
Q Consensus 241 ~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~-----~~~~~L~~l~l~~n~~ 288 (327)
++++| |..+. +.|+.|++++|++. .+|.. ..++.+..+++.+|+.
T Consensus 373 dLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 373 DVSRNALTNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred ECCCCcCCCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 55555 22221 24666777777766 33332 2235566677777753
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.5e-18 Score=166.53 Aligned_cols=246 Identities=26% Similarity=0.288 Sum_probs=143.9
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 36899999998 7998776 47999999999998 5664 2578999999999988 45642 46788888888
Q ss_pred Cccccc----------cCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhc
Q 040487 82 NYLMTK----------PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTV 151 (327)
Q Consensus 82 n~l~~~----------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 151 (327)
|.++.+ ++++|.+.. +|.. +++|+.|++++|.+.. +|.. ..+|+.|++++|.+.. +|.
T Consensus 272 N~L~~Lp~lp~~L~~L~Ls~N~Lt~-LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~-- 339 (788)
T PRK15387 272 NPLTHLPALPSGLCKLWIFGNQLTS-LPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT-- 339 (788)
T ss_pred CchhhhhhchhhcCEEECcCCcccc-cccc----ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc--
Confidence 877542 223333321 2221 1255555555555552 2321 1234455555555542 332
Q ss_pred cCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 152 GGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 152 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
...+|+.|++++|.++ .+|... ++|+.|++++|.++ .+|.. ..+|+.|++++|.+++ +|
T Consensus 340 -lp~~Lq~LdLS~N~Ls-~LP~lp--------------~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP 398 (788)
T PRK15387 340 -LPSGLQELSVSDNQLA-SLPTLP--------------SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP 398 (788)
T ss_pred -cccccceEecCCCccC-CCCCCC--------------cccceehhhccccc-cCccc---ccccceEEecCCcccC-CC
Confidence 1235666777776666 344321 13555556666655 34432 2356666666666653 33
Q ss_pred hhhhcccccccccCc-cccC-CCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCCCCCCCC
Q 040487 232 PHIQKLKQQSLRKNS-QVIG-ALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNYALGSPP 293 (327)
Q Consensus 232 ~~l~~L~~l~l~~~~-~~l~-~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~~l~~~p 293 (327)
....+|+.|++++|. ..+. ...+|+.|++++|+++ .+|.. ..++.|+.+++++|+.-+.+|
T Consensus 399 ~l~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 399 VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CcccCCCEEEccCCcCCCCCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 344556666666661 1111 1235667777777776 45543 556677777777775334433
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2.2e-20 Score=165.94 Aligned_cols=247 Identities=21% Similarity=0.204 Sum_probs=149.8
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCccccc----CCcccccCCCCCEEEccCccccc------cCcccccCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGT----IPNSIINASKLITLNLGYNYFSG------LIPNTFGNLR 72 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~ 72 (327)
.|+|+++.+++.-...++..+..|++|+++++.+++. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776433333333677788888888887532 34445567778888888877652 2344566788
Q ss_pred CCcEEeCCCCccccccCCCCCCcccCchhhhhcc--ccccEEEccCCcccc----cCCccccCC-CCCcEEEccCCcccC
Q 040487 73 FLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFS--ASLQEFNAYGCELKG----SIPQEIGNL-SGLIVLNLFNNDLIG 145 (327)
Q Consensus 73 ~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~ 145 (327)
+|+.|++++|.+.. ..+..+..+. ++|++|++++|.+.. .+...+..+ ++|++|++++|.+++
T Consensus 82 ~L~~L~l~~~~~~~----------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 82 GLQELDLSDNALGP----------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred ceeEEEccCCCCCh----------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence 88888887776642 1333343333 138888888887762 223344555 788888888888773
Q ss_pred C----CchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCccccc----CCccccCccCCc
Q 040487 146 T----IPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSS----IPSSFWNLEYIL 217 (327)
Q Consensus 146 ~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~ 217 (327)
. +...+..+++|+.|++++|.+++.....+.. .+..+++|++|++++|.+++. +...+..+++|+
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAE-------GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH-------HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 2 2334556678888888888876422111110 112235688888888877643 233445677888
Q ss_pred EEecCCCcCCCCCchhh--------hcccccccccC----------ccccCCCCCCCeEeCcCCcce
Q 040487 218 QIDLSSNSLSGSLLPHI--------QKLKQQSLRKN----------SQVIGALPHLKQLNLSYNRLE 266 (327)
Q Consensus 218 ~L~ls~n~l~~~~~~~l--------~~L~~l~l~~~----------~~~l~~~~~L~~L~l~~n~l~ 266 (327)
+|++++|.+++..+..+ ++|+.+++++| ...+..+++|+.+++++|.+.
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 88888888775332222 23444444444 123334456666666666655
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=2.1e-18 Score=166.25 Aligned_cols=219 Identities=24% Similarity=0.389 Sum_probs=168.8
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 201 L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 201 ITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 578999999998 7898775 58999999999998 5676553 47999999999998 6777654 589999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.++. +|..+. .+|+.|++++|.++. +|..+. .+|+.|++++|.+.. +|..+ .++|+.|
T Consensus 271 ~N~L~~-----------LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L 330 (754)
T PRK15370 271 HNKISC-----------LPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTL 330 (754)
T ss_pred CCccCc-----------cccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceec
Confidence 998865 444332 389999999999884 554432 478899999999884 55433 3689999
Q ss_pred EccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhccccc
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQ 240 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l 240 (327)
++++|.++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.++...+.....|+.|
T Consensus 331 ~Ls~N~Lt-~LP~~l~-------------~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~~sL~~L 393 (754)
T PRK15370 331 EAGENALT-SLPASLP-------------PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLPAALQIM 393 (754)
T ss_pred cccCCccc-cCChhhc-------------CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHHHHHHHH
Confidence 99999988 4665442 36899999999998 566654 3689999999999985433333468888
Q ss_pred ccccC-----cc----ccCCCCCCCeEeCcCCcce
Q 040487 241 SLRKN-----SQ----VIGALPHLKQLNLSYNRLE 266 (327)
Q Consensus 241 ~l~~~-----~~----~l~~~~~L~~L~l~~n~l~ 266 (327)
++++| |. ....++.+..+++.+|++.
T Consensus 394 dLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 394 QASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 88887 33 3345688999999999987
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=6e-18 Score=162.47 Aligned_cols=218 Identities=28% Similarity=0.342 Sum_probs=154.4
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCccccc-----------
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFG----------- 69 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~----------- 69 (327)
|+.|++.+|+++ .+|. ..++|++|++++|+++ .+|.. .++|++|++++|.+. .+|..+.
T Consensus 224 L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~ 293 (788)
T PRK15387 224 ITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQ 293 (788)
T ss_pred CCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCCc
Confidence 467888888887 5774 2578888888888888 45532 345666666666554 2332111
Q ss_pred ------CCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcc
Q 040487 70 ------NLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDL 143 (327)
Q Consensus 70 ------~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 143 (327)
..++|+.|++++|+++. +|. .+.+|+.|++++|.++ .+|.. ..+|+.|++++|.+
T Consensus 294 Lt~LP~~p~~L~~LdLS~N~L~~-----------Lp~----lp~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~L 354 (788)
T PRK15387 294 LTSLPVLPPGLQELSVSDNQLAS-----------LPA----LPSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQL 354 (788)
T ss_pred cccccccccccceeECCCCcccc-----------CCC----CcccccccccccCccc-ccccc---ccccceEecCCCcc
Confidence 12455566655555543 332 2237889999999987 35532 25799999999999
Q ss_pred cCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCC
Q 040487 144 IGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSS 223 (327)
Q Consensus 144 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 223 (327)
.. +|.. ..+|+.|++++|.++ .+|... .+|+.|++++|.++ .+|.. .++|+.|++++
T Consensus 355 s~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~--------------~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 355 AS-LPTL---PSELYKLWAYNNRLT-SLPALP--------------SGLKELIVSGNRLT-SLPVL---PSELKELMVSG 411 (788)
T ss_pred CC-CCCC---Ccccceehhhccccc-cCcccc--------------cccceEEecCCccc-CCCCc---ccCCCEEEccC
Confidence 84 5542 457888999999988 455421 25889999999998 45643 35789999999
Q ss_pred CcCCCCCchhhhcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCC
Q 040487 224 NSLSGSLLPHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPI 271 (327)
Q Consensus 224 n~l~~~~~~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~ 271 (327)
|.+++ +|....+|+.|++++| |..+..+++|+.|++++|++++..+.
T Consensus 412 N~Lss-IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 412 NRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CcCCC-CCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 99985 5666677888998887 77888999999999999999976543
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=2.4e-20 Score=175.26 Aligned_cols=243 Identities=31% Similarity=0.377 Sum_probs=128.5
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++++++.+++. .+|..+. .+.+|+.++..+|.++ .+|..+....+|+.|.+.+|.+. -+|+...+++.|++|++.
T Consensus 243 l~~~dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 243 LQYLDISHNNLS-NLPEWIG-ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ceeeecchhhhh-cchHHHH-hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 456666666666 5665555 6666666666666665 56666666666666666666665 455556667777777777
Q ss_pred CCccccccCCCCCCcccCchhhhhc-cccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNF-SASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQG 159 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 159 (327)
.|.+.. +|+.+... ...++.|+.+.+.+.......=..++.|+.|++.+|.+++...+.+..+++|+.
T Consensus 319 ~N~L~~-----------lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 319 SNNLPS-----------LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred hccccc-----------cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 666644 33322221 112444444444443111111112344555666666665555555555666666
Q ss_pred EEccCCccccccCcc-ccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhccc
Q 040487 160 LDLFGNNLQGSIPYD-LCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLK 238 (327)
Q Consensus 160 L~l~~n~~~~~~~~~-l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~ 238 (327)
|++++|+++ ++|.+ +.+ ++.|++|+++||+++ .+|..+..+..|+.|...+|.+.. .|
T Consensus 388 LhLsyNrL~-~fpas~~~k-----------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP------- 446 (1081)
T KOG0618|consen 388 LHLSYNRLN-SFPASKLRK-----------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP------- 446 (1081)
T ss_pred eeecccccc-cCCHHHHhc-----------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-------
Confidence 666666665 44432 222 224555555666555 455555555555555555555532 12
Q ss_pred ccccccCccccCCCCCCCeEeCcCCcceeeCCCCCCC-CCcceecccCCCC
Q 040487 239 QQSLRKNSQVIGALPHLKQLNLSYNRLEGEIPIKGPF-RNFSTQSCFGNYA 288 (327)
Q Consensus 239 ~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~l~l~~n~~ 288 (327)
.+..++.|+.+|++.|+++...-....- ++|+.|+++||.+
T Consensus 447 ---------e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ---------ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ---------hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 2334455666666666555322222111 4566666666654
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=2.8e-19 Score=153.76 Aligned_cols=183 Identities=26% Similarity=0.277 Sum_probs=143.1
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccC-ccccccCcccccC----------
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGY-NYFSGLIPNTFGN---------- 70 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~---------- 70 (327)
.+++|..|.|+ .+|+..++.+++|+.|||++|+|+.+.|++|.+++.|..|-+.+ |+++..--..|.+
T Consensus 70 veirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 46889999998 89888888999999999999999988999999999988777766 8777332233444
Q ss_pred --------------CCCCcEEeCCCCccccc-------------------------------------------------
Q 040487 71 --------------LRFLNWLSPVQNYLMTK------------------------------------------------- 87 (327)
Q Consensus 71 --------------l~~L~~L~l~~n~l~~~------------------------------------------------- 87 (327)
+++|..|.+..|.+...
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 34454555555443322
Q ss_pred --------------------------cCCCCCCcccCch-hhhhccccccEEEccCCcccccCCccccCCCCCcEEEccC
Q 040487 88 --------------------------PLAANPLRGFLPS-LVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFN 140 (327)
Q Consensus 88 --------------------------~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 140 (327)
..+.+..-...|. .|.+++ +|+++++++|.+++.-+.+|.....+++|.+..
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 1122222233333 466777 999999999999988888999999999999999
Q ss_pred CcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhc
Q 040487 141 NDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLL 186 (327)
Q Consensus 141 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l 186 (327)
|++...-..+|.++..|++|++++|+|+...|.+|.....|..+.+
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 9998666678899999999999999999889999999988888877
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=6.4e-20 Score=141.03 Aligned_cols=177 Identities=33% Similarity=0.465 Sum_probs=113.4
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
.+.+.+.|.+++|.++ .+|..+..+.+|++|++++|++. ++|..++.+++|++|++..|++.. +|.+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-----------lprg 97 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-----------LPRG 97 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-----------Cccc
Confidence 5566666777777776 55666677777777777777776 566667777777777766666533 6666
Q ss_pred hhhccccccEEEccCCcccc-cCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccc
Q 040487 102 VSNFSASLQEFNAYGCELKG-SIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKR 180 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 180 (327)
|+.++ .|+.|++.+|++.+ .+|..|..++.|+.|+++.|+++ .+|..++.+++|+.|.+..|.+- ++|..++.+.
T Consensus 98 fgs~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt- 173 (264)
T KOG0617|consen 98 FGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT- 173 (264)
T ss_pred cCCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHH-
Confidence 66666 67777777766653 35556666666777777777766 56666677777777777776665 5666665544
Q ss_pred cchhhccCCCCCCEEEcCCCcccccCCccccCcc---CCcEEecCCCcC
Q 040487 181 LYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLE---YILQIDLSSNSL 226 (327)
Q Consensus 181 L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~---~L~~L~ls~n~l 226 (327)
+|++|++++|.++ .+|..++.+. +=+.+.+.+|..
T Consensus 174 ----------~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 174 ----------RLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred ----------HHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence 4667777777776 5555444332 223344555543
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=5e-19 Score=152.25 Aligned_cols=264 Identities=24% Similarity=0.301 Sum_probs=188.0
Q ss_pred CCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC-Ccccccc
Q 040487 10 QLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ-NYLMTKP 88 (327)
Q Consensus 10 ~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~ 88 (327)
+++ ++|..+. +.-..|+|..|+|+..-+.+|+.+++||.|||++|.+..+.|++|.+++.|..|-+.+ |+++.
T Consensus 57 GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-- 130 (498)
T KOG4237|consen 57 GLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-- 130 (498)
T ss_pred Ccc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh--
Confidence 344 6776654 5677899999999977778899999999999999999988999999999999887766 77766
Q ss_pred CCCCCCcccCch-hhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCcc
Q 040487 89 LAANPLRGFLPS-LVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNL 167 (327)
Q Consensus 89 l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 167 (327)
+|. .|+.+. .++.|.+.-|.+.-...+.|..++++..|.+..|.+....-..|..+..++.+.+..|.+
T Consensus 131 ---------l~k~~F~gL~-slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 131 ---------LPKGAFGGLS-SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred ---------hhhhHhhhHH-HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 555 456666 888888888888766777888899999999999988744444778888888888877763
Q ss_pred ccc------------cCccccCccccchhhc-----c-----C-CCCCCEE--EcC-CCcccccCC-ccccCccCCcEEe
Q 040487 168 QGS------------IPYDLCNLKRLYSLLL-----Q-----G-LVSLREL--YLD-SNKLSSSIP-SSFWNLEYILQID 220 (327)
Q Consensus 168 ~~~------------~~~~l~~~~~L~~l~l-----~-----~-~~~L~~L--~l~-~n~l~~~~~-~~l~~l~~L~~L~ 220 (327)
... .|..++...-.....+ . . ...++.+ .++ .+...+.-| ..|..+++|+.|+
T Consensus 201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 211 1111111111111111 0 0 0011111 112 222222333 4578889999999
Q ss_pred cCCCcCCCCCchhh---hcccccccccC------ccccCCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCCCC
Q 040487 221 LSSNSLSGSLLPHI---QKLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNYAL 289 (327)
Q Consensus 221 ls~n~l~~~~~~~l---~~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~~l 289 (327)
+++|.+++.-..+| ..+++|.|.+| ..+|.++..|+.|+|.+|+|+..-|.. ....+|.++++-+||+.
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999887666555 45777888888 567889999999999999999765554 56778999999999865
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.4e-18 Score=154.42 Aligned_cols=248 Identities=21% Similarity=0.146 Sum_probs=165.5
Q ss_pred EEEcccCcccc-cCCcccccCCCCCEEEccCcccccc----CcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhh
Q 040487 28 RLTLSHNKLSG-TIPNSIINASKLITLNLGYNYFSGL----IPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLV 102 (327)
Q Consensus 28 ~L~l~~~~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~ 102 (327)
.|+|.++.+++ .....+..+..|++++++++.++.. ++..+...+.+++++++++.+... ......++..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~l 77 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI----PRGLQSLLQGL 77 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc----chHHHHHHHHH
Confidence 46777777763 3344456778899999999988533 445566778899999988876420 11112345566
Q ss_pred hhccccccEEEccCCcccccCCccccCCCC---CcEEEccCCcccCC----CchhccCC-CCCCEEEccCCccccccCcc
Q 040487 103 SNFSASLQEFNAYGCELKGSIPQEIGNLSG---LIVLNLFNNDLIGT----IPKTVGGL-QQLQGLDLFGNNLQGSIPYD 174 (327)
Q Consensus 103 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~~~~~~~~~ 174 (327)
..++ +|+.|++++|.+....+..+..+.+ |++|++++|.+.+. +...+..+ ++|+.|++++|.+++.....
T Consensus 78 ~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 78 TKGC-GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HhcC-ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 7766 9999999999987544444444444 99999999988732 22344566 89999999999987432222
Q ss_pred ccCccccchhhccCCCCCCEEEcCCCccccc----CCccccCccCCcEEecCCCcCCCCCch-------hhhcccccccc
Q 040487 175 LCNLKRLYSLLLQGLVSLRELYLDSNKLSSS----IPSSFWNLEYILQIDLSSNSLSGSLLP-------HIQKLKQQSLR 243 (327)
Q Consensus 175 l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~-------~l~~L~~l~l~ 243 (327)
+.. .+..++.|++|++++|.+++. ++..+...++|+.|++++|.+++..+. .+++|+.|+++
T Consensus 157 ~~~-------~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 157 LAK-------ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHH-------HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 111 123456799999999998853 233445567999999999998754332 23457788888
Q ss_pred cCc------ccc-----CCCCCCCeEeCcCCccee--e--CC-CCCCCCCcceecccCCC
Q 040487 244 KNS------QVI-----GALPHLKQLNLSYNRLEG--E--IP-IKGPFRNFSTQSCFGNY 287 (327)
Q Consensus 244 ~~~------~~l-----~~~~~L~~L~l~~n~l~~--~--~~-~~~~~~~L~~l~l~~n~ 287 (327)
+|+ ..+ ...+.|++|++++|.+++ . +. ....+++|+.+++++|.
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 771 111 123688888888888762 1 11 11345778888888884
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=4.7e-19 Score=136.28 Aligned_cols=158 Identities=33% Similarity=0.575 Sum_probs=92.5
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
.|-+++|+++ .+|..+. .+.+|++|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||+++|
T Consensus 37 rLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 37 RLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccc
Confidence 3455666665 5565665 6666666666666666 55556666666666666666655 55666666666666666655
Q ss_pred ccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEc
Q 040487 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDL 162 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 162 (327)
.+.+ ..+|..|+.+. .|+.|++++|.+. .+|..++++++|+.|.+..|++. .+|..++.+..|++|.+
T Consensus 113 nl~e---------~~lpgnff~m~-tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 113 NLNE---------NSLPGNFFYMT-TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred cccc---------ccCCcchhHHH-HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 5543 12444455554 5666666666655 55556666666666666666554 45555566666666666
Q ss_pred cCCccccccCccccC
Q 040487 163 FGNNLQGSIPYDLCN 177 (327)
Q Consensus 163 ~~n~~~~~~~~~l~~ 177 (327)
.+|.++ .+|..++.
T Consensus 181 qgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 181 QGNRLT-VLPPELAN 194 (264)
T ss_pred ccceee-ecChhhhh
Confidence 666665 55544443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.39 E-value=5e-15 Score=126.00 Aligned_cols=239 Identities=20% Similarity=0.205 Sum_probs=139.2
Q ss_pred CCCCCCEEEcccCccccc----CCcccccCCCCCEEEccCc---cccccCcc-------cccCCCCCcEEeCCCCccccc
Q 040487 22 TLPNLERLTLSHNKLSGT----IPNSIINASKLITLNLGYN---YFSGLIPN-------TFGNLRFLNWLSPVQNYLMTK 87 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~L~~n---~l~~~~~~-------~l~~l~~L~~L~l~~n~l~~~ 87 (327)
.+..++.+++++|.+... +...+.+.++|+..++++= +...++|+ ++.+.++|++|+||.|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 566677778887777633 2233445667777777642 22223333 344556777888777765321
Q ss_pred cCCCCCCcccCchhhhhccccccEEEccCCcccccC-------------CccccCCCCCcEEEccCCcccCCC----chh
Q 040487 88 PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSI-------------PQEIGNLSGLIVLNLFNNDLIGTI----PKT 150 (327)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~~n~~~~~~----~~~ 150 (327)
.+.+ +-..+.... .|+.|+|.+|++...- ..-.+.-+.|+++...+|++.... ...
T Consensus 108 -----g~~~-l~~ll~s~~-~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 108 -----GIRG-LEELLSSCT-DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred -----chHH-HHHHHHhcc-CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 1110 112233333 7788888888765211 112334567888888888877432 334
Q ss_pred ccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCccccc----CCccccCccCCcEEecCCCcC
Q 040487 151 VGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSS----IPSSFWNLEYILQIDLSSNSL 226 (327)
Q Consensus 151 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l 226 (327)
|...+.|+.+.++.|.|....-. +-...+.+|+.|+.||+.+|.++.. +...+..++.|+.+++++|.+
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~-------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVT-------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHhccccceEEEecccccCchhH-------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 66678888888888877522111 1122345677888888888888743 344566778888888888888
Q ss_pred CCCCchhhhc-ccccccccCccccCCCCCCCeEeCcCCcceee------CCCCCCCCCcceecccCC
Q 040487 227 SGSLLPHIQK-LKQQSLRKNSQVIGALPHLKQLNLSYNRLEGE------IPIKGPFRNFSTQSCFGN 286 (327)
Q Consensus 227 ~~~~~~~l~~-L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~------~~~~~~~~~L~~l~l~~n 286 (327)
.......+.+ ++ ...|+|+.+.+.+|.++.. .+. ...+.|..|++++|
T Consensus 254 ~~~Ga~a~~~al~-----------~~~p~L~vl~l~gNeIt~da~~~la~~~-~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 254 ENEGAIAFVDALK-----------ESAPSLEVLELAGNEITRDAALALAACM-AEKPDLEKLNLNGN 308 (382)
T ss_pred ccccHHHHHHHHh-----------ccCCCCceeccCcchhHHHHHHHHHHHH-hcchhhHHhcCCcc
Confidence 7654433321 11 1345666666666665532 111 22455666666666
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=2.3e-14 Score=129.00 Aligned_cols=196 Identities=28% Similarity=0.434 Sum_probs=164.3
Q ss_pred EEccCCCCcccCChhhh-cCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 4 INLIQNQLSGHLPSTMG-CTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 4 L~l~~~~~~~~lp~~~~-~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
|.|++-+++ ++|..-+ ..+.--...|++.|++. .+|..++.+..|+.+.++.|.+. .+|..+.++..|++|+++.|
T Consensus 55 l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 55 LLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred cccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence 455666665 5665433 13344467899999988 78888888888999999999888 68888999999999999999
Q ss_pred ccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEc
Q 040487 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDL 162 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 162 (327)
++.. +|..+..++ |+.|-+++|+++ .+|+.++....|..|+.+.|++. .+|..++.+.+|+.|++
T Consensus 132 qlS~-----------lp~~lC~lp--Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 132 QLSH-----------LPDGLCDLP--LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhc-----------CChhhhcCc--ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence 9866 888888775 999999999998 67888888899999999999987 67778889999999999
Q ss_pred cCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 163 FGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 163 ~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
..|.+. .+|..++.++ |..||++.|++. .+|-.|..+..|++|-|.+|.+.+...
T Consensus 197 rRn~l~-~lp~El~~Lp------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 197 RRNHLE-DLPEELCSLP------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hhhhhh-hCCHHHhCCc------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence 999987 7888887765 899999999998 889999999999999999999975443
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.32 E-value=1.1e-13 Score=117.92 Aligned_cols=246 Identities=20% Similarity=0.208 Sum_probs=169.3
Q ss_pred CeEEEccCCCCcccCChhhh---cCCCCCCEEEcccC---cccccCC-------cccccCCCCCEEEccCccccccCccc
Q 040487 1 MIVINLIQNQLSGHLPSTMG---CTLPNLERLTLSHN---KLSGTIP-------NSIINASKLITLNLGYNYFSGLIPNT 67 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~---~~l~~L~~L~l~~~---~l~~~~~-------~~l~~l~~L~~L~L~~n~l~~~~~~~ 67 (327)
++++++++|.+..+-...+. ...+.|+..++++= +....+| .++..+++|++|+||+|.+....++.
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence 36799999998754333332 26677888888763 2222334 34457889999999999998665544
Q ss_pred ----ccCCCCCcEEeCCCCccccccCCCCCCcccCc----hhhhhccccccEEEccCCccccc----CCccccCCCCCcE
Q 040487 68 ----FGNLRFLNWLSPVQNYLMTKPLAANPLRGFLP----SLVSNFSASLQEFNAYGCELKGS----IPQEIGNLSGLIV 135 (327)
Q Consensus 68 ----l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~ 135 (327)
+..+..|++|.|.+|++.. ..+..+.+.+. ......+++|+.+...+|.+... +...+...+.|+.
T Consensus 112 l~~ll~s~~~L~eL~L~N~Glg~--~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 112 LEELLSSCTDLEELYLNNCGLGP--EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHhccCHHHHhhhcCCCCh--hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 4578999999999998865 22222221100 01111234899999999987632 3445667789999
Q ss_pred EEccCCcccCC----CchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccc-
Q 040487 136 LNLFNNDLIGT----IPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSF- 210 (327)
Q Consensus 136 L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l- 210 (327)
+.++.|.|... +..++..+++|+.||+..|-++......+.. .+..++.|+.|++++|.+......++
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak-------aL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK-------ALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH-------HhcccchheeecccccccccccHHHHH
Confidence 99999988632 2345778999999999999987543333322 12335679999999999986554443
Q ss_pred ----cCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCcce
Q 040487 211 ----WNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLE 266 (327)
Q Consensus 211 ----~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~ 266 (327)
...|+|+.+.+.+|.++......+. .++...|.|+.|++++|++.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la-----------~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALA-----------ACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHH-----------HHHhcchhhHHhcCCccccc
Confidence 3478999999999999865433332 33445789999999999994
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=2e-11 Score=111.76 Aligned_cols=180 Identities=37% Similarity=0.506 Sum_probs=102.8
Q ss_pred CCCCCCEEEcccCcccccCCcccccCC-CCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCch
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINAS-KLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPS 100 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~ 100 (327)
.++.++.+++.++.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|+++. +|.
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-----------l~~ 180 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-----------LPK 180 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-----------hhh
Confidence 4455666666666666 4444444443 6666666666665 344455666666666666666654 444
Q ss_pred hhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccc
Q 040487 101 LVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKR 180 (327)
Q Consensus 101 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 180 (327)
.....+ .|+.|++++|.+. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..
T Consensus 181 ~~~~~~-~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~--- 253 (394)
T COG4886 181 LLSNLS-NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN--- 253 (394)
T ss_pred hhhhhh-hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc---
Confidence 333443 6666666666665 34433334444666666666433 23444555666666666666554 22223322
Q ss_pred cchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 181 LYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 181 L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
+++++.|++++|.++. ++. ++.+.+++.|++++|.++...+
T Consensus 254 --------l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 254 --------LSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred --------ccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 3357777777777763 333 6666777777777776665433
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=2.3e-11 Score=111.37 Aligned_cols=179 Identities=34% Similarity=0.517 Sum_probs=144.7
Q ss_pred CeEEEccCCCCcccCChhhhcCCC-CCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLP-NLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 79 (327)
++.|++.++.++ .+|.... .+. +|+.|++++|++. .++..+..+++|+.|++++|++. .+|...+..+.|+.|++
T Consensus 118 l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred eeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 467899999998 7888776 564 9999999999999 66667889999999999999998 66766668999999999
Q ss_pred CCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCE
Q 040487 80 VQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQG 159 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 159 (327)
++|++.. +|....... .|+++.+++|... ..+..+.++.++..+.+.+|++. ..+..+..+++++.
T Consensus 194 s~N~i~~-----------l~~~~~~~~-~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~ 259 (394)
T COG4886 194 SGNKISD-----------LPPEIELLS-ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259 (394)
T ss_pred cCCcccc-----------Cchhhhhhh-hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccce
Confidence 9999877 666554444 7999999999654 45667888899999999999877 34667788899999
Q ss_pred EEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccc
Q 040487 160 LDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSF 210 (327)
Q Consensus 160 L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l 210 (327)
|++++|.++ .++. ++. ..+++.|++++|.+....+...
T Consensus 260 L~~s~n~i~-~i~~-~~~-----------~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 260 LDLSNNQIS-SISS-LGS-----------LTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred ecccccccc-cccc-ccc-----------cCccCEEeccCccccccchhhh
Confidence 999999998 4443 444 3468999999999886655543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.5e-12 Score=111.80 Aligned_cols=186 Identities=22% Similarity=0.215 Sum_probs=92.0
Q ss_pred CCCCCCEEEcccCcccccCC-cccccCCCCCEEEccCccccccCc--ccccCCCCCcEEeCCCCccccccCCCCCCcccC
Q 040487 22 TLPNLERLTLSHNKLSGTIP-NSIINASKLITLNLGYNYFSGLIP--NTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFL 98 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~ 98 (327)
++.+|+.+.+.++.+..... .....|++++.|||+.|-+....+ .....+++|+.|+++.|.+.-. .......
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~--~~s~~~~-- 194 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF--ISSNTTL-- 194 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC--ccccchh--
Confidence 55667777777766652111 244567777777777765543222 3345667777777777765331 1111111
Q ss_pred chhhhhccccccEEEccCCccccc-CCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccC
Q 040487 99 PSLVSNFSASLQEFNAYGCELKGS-IPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCN 177 (327)
Q Consensus 99 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 177 (327)
.+ +.++.|.++.|+++.. +......+++|..|++..|.....-......++.|+.|++++|.+- ..+.
T Consensus 195 -----~l-~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~---- 263 (505)
T KOG3207|consen 195 -----LL-SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQ---- 263 (505)
T ss_pred -----hh-hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccc----
Confidence 11 2666666766666522 2223444566666666666422111222234556666666666554 2210
Q ss_pred ccccchhhccCCCCCCEEEcCCCccccc-CCcc-----ccCccCCcEEecCCCcCC
Q 040487 178 LKRLYSLLLQGLVSLRELYLDSNKLSSS-IPSS-----FWNLEYILQIDLSSNSLS 227 (327)
Q Consensus 178 ~~~L~~l~l~~~~~L~~L~l~~n~l~~~-~~~~-----l~~l~~L~~L~ls~n~l~ 227 (327)
.+ .++.++.|+.|+++.+.+.+. .|+. ...+++|+.|+++.|++.
T Consensus 264 ~~-----~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 264 GY-----KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cc-----ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 00 012234455555555555432 1211 123555666666666553
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=1.5e-12 Score=117.61 Aligned_cols=188 Identities=29% Similarity=0.439 Sum_probs=121.1
Q ss_pred EEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCc
Q 040487 4 INLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNY 83 (327)
Q Consensus 4 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 83 (327)
.|++.|++. ++|..+. .+..|..+.+.+|.+- .+|.+++.+..|.+++++.|++. .+|..++.++ |+.|.+++|+
T Consensus 80 aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 467777776 7777766 6667777777777766 56677777777777777777776 5666665554 6777777777
Q ss_pred cccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEcc
Q 040487 84 LMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLF 163 (327)
Q Consensus 84 l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 163 (327)
++. +|..++... +|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+.. -.|.+||++
T Consensus 155 l~~-----------lp~~ig~~~-tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfS 219 (722)
T KOG0532|consen 155 LTS-----------LPEEIGLLP-TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFS 219 (722)
T ss_pred ccc-----------CCcccccch-hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeeecc
Confidence 655 666666444 6777777777766 45556677777777777777766 34554543 346667777
Q ss_pred CCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCcccc---CccCCcEEecCCC
Q 040487 164 GNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFW---NLEYILQIDLSSN 224 (327)
Q Consensus 164 ~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~ls~n 224 (327)
.|+++ .+|..|.+|. .|++|-|.+|.+. ..|..+. ...-.++|+...|
T Consensus 220 cNkis-~iPv~fr~m~-----------~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMR-----------HLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCcee-ecchhhhhhh-----------hheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 77776 6776666654 4666666666666 3333221 2233455555555
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=2.1e-11 Score=102.35 Aligned_cols=129 Identities=31% Similarity=0.350 Sum_probs=72.9
Q ss_pred cccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhcc
Q 040487 108 SLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQ 187 (327)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~ 187 (327)
.|+++++++|.++ .+.++..-.++++.|++++|.+.. . +.+..+++|+.||+++|.++ .+..+=.+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K---------- 350 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLK---------- 350 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhh----------
Confidence 4666666666666 344455556667777777776652 2 22556667777777776665 22211111
Q ss_pred CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCccee
Q 040487 188 GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEG 267 (327)
Q Consensus 188 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~ 267 (327)
+-+++.|.+++|.+.+ -..+..+.+|..||+++|++...- . ...++++|.|+.+.+.+|++.+
T Consensus 351 -LGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ld--------e------V~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 351 -LGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELD--------E------VNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred -hcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHH--------H------hcccccccHHHHHhhcCCCccc
Confidence 1245666666666642 123455666677777777654210 0 0345666777777777777664
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.10 E-value=3e-10 Score=109.33 Aligned_cols=106 Identities=29% Similarity=0.465 Sum_probs=77.2
Q ss_pred CCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhc
Q 040487 26 LERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNF 105 (327)
Q Consensus 26 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~ 105 (327)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+ .+.+|..++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l----------sg~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF----------NGSIPESLGQL 489 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC----------CCCCchHHhcC
Confidence 66777777777777777777777888888887777777777777777888887666655 34467777777
Q ss_pred cccccEEEccCCcccccCCccccCC-CCCcEEEccCCc
Q 040487 106 SASLQEFNAYGCELKGSIPQEIGNL-SGLIVLNLFNND 142 (327)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~ 142 (327)
+ +|+.|++++|.+.+.+|..+... .++..+++.+|.
T Consensus 490 ~-~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 490 T-SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred C-CCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 6 78888888877777777666543 355667777665
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=9.4e-11 Score=115.54 Aligned_cols=146 Identities=25% Similarity=0.299 Sum_probs=104.6
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCc--ccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNK--LSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
.+.+-++.+. .++... ..++|++|-+.+|. +.......|..++.|++|||++|.-.+.+|+.++.+.+||+|+++
T Consensus 527 r~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 527 RMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred EEEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 4455555555 555555 56789999888886 443333447789999999999887777899999999999999988
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCccc--CCCchhccCCCCCC
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLI--GTIPKTVGGLQQLQ 158 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~ 158 (327)
++.+.. +|..+.++. +|.+|++..+.....++.....+++|++|.+...... ...-..+..+.+|+
T Consensus 604 ~t~I~~-----------LP~~l~~Lk-~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 604 DTGISH-----------LPSGLGNLK-KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred CCCccc-----------cchHHHHHH-hhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 888755 899999998 9999999988776556666667899999988655422 11222334455555
Q ss_pred EEEcc
Q 040487 159 GLDLF 163 (327)
Q Consensus 159 ~L~l~ 163 (327)
.+...
T Consensus 672 ~ls~~ 676 (889)
T KOG4658|consen 672 NLSIT 676 (889)
T ss_pred hheee
Confidence 55543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.5e-10 Score=92.43 Aligned_cols=125 Identities=24% Similarity=0.229 Sum_probs=38.7
Q ss_pred CCCCCCEEEcccCcccccCCcccc-cCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCch
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSII-NASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPS 100 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~ 100 (327)
+..+++.|+|++|.|+. +. .++ .+.+|++|++++|.++.. +.+..+++|++|++++|.++. +..
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-----------i~~ 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-----------ISE 81 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S------------CH
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-----------ccc
Confidence 44567888888888773 32 344 467788888888888743 356777888888877777755 433
Q ss_pred hhh-hccccccEEEccCCcccccC-CccccCCCCCcEEEccCCcccCCC---chhccCCCCCCEEEc
Q 040487 101 LVS-NFSASLQEFNAYGCELKGSI-PQEIGNLSGLIVLNLFNNDLIGTI---PKTVGGLQQLQGLDL 162 (327)
Q Consensus 101 ~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l 162 (327)
.+. .++ +|+.|++++|.+...- -..+..+++|++|++.+|.++... ...+..+|+|+.||-
T Consensus 82 ~l~~~lp-~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 82 GLDKNLP-NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHH-T-T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred chHHhCC-cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 333 344 7777777777765321 123455666666666666665221 012334555555553
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.09 E-value=4.2e-10 Score=108.30 Aligned_cols=118 Identities=31% Similarity=0.475 Sum_probs=90.5
Q ss_pred CCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhc
Q 040487 157 LQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQK 236 (327)
Q Consensus 157 L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 236 (327)
++.|++++|.+.+.+|..+..++ +|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~-----------~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-- 486 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLR-----------HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-- 486 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCC-----------CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH--
Confidence 56777888887777777666543 57888888888887888778888888888888888887777544
Q ss_pred ccccccccCccccCCCCCCCeEeCcCCcceeeCCCC--CCCCCcceecccCCCCCCCCCCCCCCCCCC
Q 040487 237 LKQQSLRKNSQVIGALPHLKQLNLSYNRLEGEIPIK--GPFRNFSTQSCFGNYALGSPPILQVPPYKE 302 (327)
Q Consensus 237 L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~L~~l~l~~n~~l~~~p~~~~~~c~~ 302 (327)
+.+++|+.|++++|++++.+|.. ....++..+++.+|+.++..|. +..|..
T Consensus 487 -------------~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~--l~~C~~ 539 (623)
T PLN03150 487 -------------GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG--LRACGP 539 (623)
T ss_pred -------------hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC--CCCCcc
Confidence 46789999999999999998875 2234677899999988866664 357854
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.9e-11 Score=105.35 Aligned_cols=210 Identities=24% Similarity=0.197 Sum_probs=141.8
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccc--cCCcccccCCCCCEEEccCccccccCcc-cccCCCCCcEE
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSG--TIPNSIINASKLITLNLGYNYFSGLIPN-TFGNLRFLNWL 77 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L 77 (327)
|+++.+.++.+....-......|++++.||+++|-+.. .+-.....+|+|+.|+++.|++...... .-..++.|+.|
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL 202 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence 45667778877632222455699999999999997662 2233345799999999999998632221 23367899999
Q ss_pred eCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCc--hhccCCC
Q 040487 78 SPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIP--KTVGGLQ 155 (327)
Q Consensus 78 ~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~ 155 (327)
.++.|+++..+ +-......| +++.|++..|...........-+..|++|++++|.+-+ .+ ...+.++
T Consensus 203 ~l~~CGls~k~---------V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~ 271 (505)
T KOG3207|consen 203 VLNSCGLSWKD---------VQWILLTFP-SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLP 271 (505)
T ss_pred EeccCCCCHHH---------HHHHHHhCC-cHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccccccccccc
Confidence 99999875411 222233344 99999999995322323334556789999999998763 33 3456789
Q ss_pred CCCEEEccCCccccc-cCccccCccccchhhc-cCCCCCCEEEcCCCccccc-CCccccCccCCcEEecCCCcCCC
Q 040487 156 QLQGLDLFGNNLQGS-IPYDLCNLKRLYSLLL-QGLVSLRELYLDSNKLSSS-IPSSFWNLEYILQIDLSSNSLSG 228 (327)
Q Consensus 156 ~L~~L~l~~n~~~~~-~~~~l~~~~~L~~l~l-~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~ 228 (327)
.|..|+++.|.+.+. .|+. +.+.. ..+++|+.|++..|++.+. ....+..+++|+.|.+..|.++.
T Consensus 272 ~L~~Lnls~tgi~si~~~d~-------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDV-------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhccccCcchhcCCCc-------cchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 999999999988732 1111 11111 3467899999999999742 12245567888999988888764
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=7.2e-11 Score=99.21 Aligned_cols=126 Identities=25% Similarity=0.256 Sum_probs=79.7
Q ss_pred CCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCcc
Q 040487 130 LSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSS 209 (327)
Q Consensus 130 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~ 209 (327)
.+.|+++|+++|.|. .+.+.+.-.|.++.|++++|.++ ++- .+. .+++|+.||+++|.++ ....+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa-----------~L~~L~~LDLS~N~Ls-~~~Gw 347 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLA-----------ELPQLQLLDLSGNLLA-ECVGW 347 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhh-----------hcccceEeecccchhH-hhhhh
Confidence 445666677776665 44555555666677777776665 111 122 2345666777776666 34444
Q ss_pred ccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCcceee--CCCCCCCCCcceecccCCC
Q 040487 210 FWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEGE--IPIKGPFRNFSTQSCFGNY 287 (327)
Q Consensus 210 l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~~L~~l~l~~n~ 287 (327)
-..+.+++.|.+++|.+.+ -+.+..+=+|+.||+++|++... ....+++|.|+.+.+.+||
T Consensus 348 h~KLGNIKtL~La~N~iE~-----------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIET-----------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhcCEeeeehhhhhHhh-----------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 4455666666666665532 13344566899999999998742 2233789999999999997
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=3.8e-10 Score=90.08 Aligned_cols=124 Identities=27% Similarity=0.275 Sum_probs=52.4
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccc-cCCCCCcEEeC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTF-GNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l 79 (327)
+++|+|.+|.|. .+. .+...+.+|+.|++++|.++. +. .+..+++|++|++++|+++. +.+.+ ..+++|++|++
T Consensus 21 ~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 21 LRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred cccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEEC
Confidence 467999999997 453 454468899999999999994 43 57789999999999999985 44344 46899999999
Q ss_pred CCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccC---CccccCCCCCcEEEcc
Q 040487 80 VQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSI---PQEIGNLSGLIVLNLF 139 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~ 139 (327)
++|++.... --..+..++ +|+.|++.+|+++... ...+..+|+|+.||-.
T Consensus 96 ~~N~I~~l~---------~l~~L~~l~-~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLN---------ELEPLSSLP-KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCC---------CCGGGGG-T-T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChH---------HhHHHHcCC-CcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999986621 113455666 9999999999998431 1235668999998764
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.2e-09 Score=71.90 Aligned_cols=61 Identities=43% Similarity=0.610 Sum_probs=44.7
Q ss_pred CCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCcc
Q 040487 24 PNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYL 84 (327)
Q Consensus 24 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 84 (327)
|+|++|++++|.++...+..|.++++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777877777755556777777888888887777765556777777788877777753
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=2.7e-09 Score=105.40 Aligned_cols=105 Identities=25% Similarity=0.290 Sum_probs=83.4
Q ss_pred CeEEEccCCC--CcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEe
Q 040487 1 MIVINLIQNQ--LSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLS 78 (327)
Q Consensus 1 L~~L~l~~~~--~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 78 (327)
|+.|-+.+|. +. .++..++..+|.|++||+++|.-.+.+|+.++++-+||+|+++++.+. .+|..+.++.+|.+|+
T Consensus 547 L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred cceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 3455666665 44 677777778999999999998776789999999999999999999998 8999999999999999
Q ss_pred CCCCccccccCCCCCCcccCchhhhhccccccEEEccCCc
Q 040487 79 PVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCE 118 (327)
Q Consensus 79 l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 118 (327)
+..+.... .+|.....+. +|++|.+....
T Consensus 625 l~~~~~l~----------~~~~i~~~L~-~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLE----------SIPGILLELQ-SLRVLRLPRSA 653 (889)
T ss_pred cccccccc----------cccchhhhcc-cccEEEeeccc
Confidence 88765422 1345555576 89998876654
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=4.5e-10 Score=103.35 Aligned_cols=76 Identities=37% Similarity=0.499 Sum_probs=41.9
Q ss_pred CCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC-chhhhcccccccccC----------ccccCCCCCCCeEeC
Q 040487 192 LRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL-LPHIQKLKQQSLRKN----------SQVIGALPHLKQLNL 260 (327)
Q Consensus 192 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~l~~L~~l~l~~~----------~~~l~~~~~L~~L~l 260 (327)
|+.+++++|.+. ..+..+..+..+..+++..|.+.... ......+..+....+ .......+.++.+.+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTL 312 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccccccccccc
Confidence 677778888776 33345566777777888777765421 222222222222222 112455666677777
Q ss_pred cCCcceee
Q 040487 261 SYNRLEGE 268 (327)
Q Consensus 261 ~~n~l~~~ 268 (327)
.+|.+...
T Consensus 313 ~~~~~~~~ 320 (414)
T KOG0531|consen 313 ELNPIRKI 320 (414)
T ss_pred ccCccccc
Confidence 76666543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=3.1e-09 Score=69.83 Aligned_cols=59 Identities=34% Similarity=0.519 Sum_probs=53.4
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccc
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYF 60 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l 60 (327)
|++|++++|++. .+|...+..+++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus 3 L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999998 78877766999999999999999977788999999999999999975
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.70 E-value=1.6e-09 Score=89.94 Aligned_cols=94 Identities=18% Similarity=0.110 Sum_probs=48.9
Q ss_pred CCCCcEEEccCCcccCCCc----hhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCccccc
Q 040487 130 LSGLIVLNLFNNDLIGTIP----KTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSS 205 (327)
Q Consensus 130 l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~ 205 (327)
-+.|+++.+..|++..-.. ..+..-..|+++.+..|.|..... ..|-.+.+..+.+|+.||+++|.++-.
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv------~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV------TMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh------HHHHHHHHHHhCcceeeeccccchhhh
Confidence 3556666666666652111 112223566677777666652211 112222334456677777777766622
Q ss_pred ----CCccccCccCCcEEecCCCcCCCC
Q 040487 206 ----IPSSFWNLEYILQIDLSSNSLSGS 229 (327)
Q Consensus 206 ----~~~~l~~l~~L~~L~ls~n~l~~~ 229 (327)
+..++..++.|+.|++..|-++..
T Consensus 230 gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 230 GSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred hHHHHHHHhcccchhhhccccchhhccc
Confidence 223344556667777777766543
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=1.5e-09 Score=99.82 Aligned_cols=232 Identities=26% Similarity=0.240 Sum_probs=119.4
Q ss_pred CCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhh
Q 040487 23 LPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLV 102 (327)
Q Consensus 23 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~ 102 (327)
+..++.++++.|.+.. .-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.++.. ..+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i------------~~l 136 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL------------EGL 136 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc------------cch
Confidence 4455555566665552 22335556666666666666653 222255666666666666666441 112
Q ss_pred hhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCc-hhccCCCCCCEEEccCCccccccCccccCcccc
Q 040487 103 SNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIP-KTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRL 181 (327)
Q Consensus 103 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 181 (327)
..++ .|+.|++.+|.+... ..+..+++|+.+++++|.+...-+ . ...+..++.+.+.+|.+...- .+..
T Consensus 137 ~~l~-~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~---- 206 (414)
T KOG0531|consen 137 STLT-LLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDL---- 206 (414)
T ss_pred hhcc-chhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHH----
Confidence 3333 466666666666521 234445666666666666653222 1 345556666666666554111 1111
Q ss_pred chhhccCCCCCCEEEcCCCcccccCCccccCcc--CCcEEecCCCcCCCC--CchhhhcccccccccC----ccccCCCC
Q 040487 182 YSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLE--YILQIDLSSNSLSGS--LLPHIQKLKQQSLRKN----SQVIGALP 253 (327)
Q Consensus 182 ~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~ls~n~l~~~--~~~~l~~L~~l~l~~~----~~~l~~~~ 253 (327)
+..+..+++..|.++..-+ +..+. .|+.+.+++|.+... ....+..++.+++.++ ...+...+
T Consensus 207 -------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~ 277 (414)
T KOG0531|consen 207 -------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLP 277 (414)
T ss_pred -------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccc
Confidence 1123334566666652211 11122 267777888877642 3445555666666555 23334455
Q ss_pred CCCeEeCcCCcceeeCC---C--CCCCCCcceecccCCC
Q 040487 254 HLKQLNLSYNRLEGEIP---I--KGPFRNFSTQSCFGNY 287 (327)
Q Consensus 254 ~L~~L~l~~n~l~~~~~---~--~~~~~~L~~l~l~~n~ 287 (327)
.+..+....+++..... . ....+.+....+.+|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 278 KLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred hHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 56666666666552211 1 2344556666676665
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7e-10 Score=93.19 Aligned_cols=178 Identities=22% Similarity=0.153 Sum_probs=120.6
Q ss_pred CCCCEEEcccCccccc-CCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCc-cccccCCCCCCcccCchh
Q 040487 24 PNLERLTLSHNKLSGT-IPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNY-LMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 24 ~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~l~~~~~~~~~~~~ 101 (327)
..|+++|+++..++.. +-..+..|.+|+.|.+.++++.+.+...+.+-.+|+.|+++++. +++ +. ..-.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-----n~----~~ll 255 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-----NA----LQLL 255 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-----hH----HHHH
Confidence 3589999999888733 33445688899999999999988777788889999999998763 322 11 2223
Q ss_pred hhhccccccEEEccCCcccccCCccccC--CCCCcEEEccCCcc--cCCCch-hccCCCCCCEEEccCCcc-ccccCccc
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGN--LSGLIVLNLFNNDL--IGTIPK-TVGGLQQLQGLDLFGNNL-QGSIPYDL 175 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~n~~--~~~~~~-~~~~~~~L~~L~l~~n~~-~~~~~~~l 175 (327)
+..+. .|+.|+++.|......-..+.. -++|+.|+++|+.- ....-. ....+++|..||+++|.. +..+...+
T Consensus 256 ~~scs-~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 256 LSSCS-RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred HHhhh-hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 44454 8999999999876432222111 25688888887642 111222 234689999999998754 32333344
Q ss_pred cCccccchhhccCCCCCCEEEcCCCcccccCCcc---ccCccCCcEEecCCC
Q 040487 176 CNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSS---FWNLEYILQIDLSSN 224 (327)
Q Consensus 176 ~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~ls~n 224 (327)
.+ ++.|++|.++.|.. .+|.. +...|.|.+|++.++
T Consensus 335 ~k-----------f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 335 FK-----------FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred Hh-----------cchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 44 44688999988863 44543 467899999999876
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=3.3e-10 Score=105.41 Aligned_cols=123 Identities=24% Similarity=0.231 Sum_probs=55.8
Q ss_pred CcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccC
Q 040487 133 LIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWN 212 (327)
Q Consensus 133 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 212 (327)
|...++++|.+. ....++.-++.++.|++++|+++.. . .+ ..++.|++|||++|.++ .+|..-..
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~L-----------r~l~~LkhLDlsyN~L~-~vp~l~~~ 230 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NL-----------RRLPKLKHLDLSYNCLR-HVPQLSMV 230 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HH-----------Hhcccccccccccchhc-cccccchh
Confidence 444555555554 3334444455555555555555411 0 11 22334555555555555 33332111
Q ss_pred ccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCcceeeC--CCCCCCCCcceecccCCC
Q 040487 213 LEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEGEI--PIKGPFRNFSTQSCFGNY 287 (327)
Q Consensus 213 l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L~~l~l~~n~ 287 (327)
-..|..|++.+|.++.. ..+.++.+|+.||+++|-+.+.- .....+..|+.|++.|||
T Consensus 231 gc~L~~L~lrnN~l~tL-----------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 231 GCKLQLLNLRNNALTTL-----------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhheeeeecccHHHhh-----------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 12255555555554421 12234455555555555544311 111334445555555554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-08 Score=85.63 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=88.7
Q ss_pred CCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCc-ccCC-Cchh
Q 040487 73 FLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNND-LIGT-IPKT 150 (327)
Q Consensus 73 ~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~ 150 (327)
.|++||+++..++. ..+...+..+. +|+.|.+.++.+.+.+...+++-.+|+.++++.+. ++.. ..-.
T Consensus 186 Rlq~lDLS~s~it~---------stl~~iLs~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV---------STLHGILSQCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhHHhhcchhheeH---------HHHHHHHHHHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH
Confidence 46667766665543 11222233333 67777777777766666666777777777777653 3211 1223
Q ss_pred ccCCCCCCEEEccCCccccccCcc-ccCccccchhhccCCCCCCEEEcCCCc--cc-ccCCccccCccCCcEEecCCC-c
Q 040487 151 VGGLQQLQGLDLFGNNLQGSIPYD-LCNLKRLYSLLLQGLVSLRELYLDSNK--LS-SSIPSSFWNLEYILQIDLSSN-S 225 (327)
Q Consensus 151 ~~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~l~l~~~~~L~~L~l~~n~--l~-~~~~~~l~~l~~L~~L~ls~n-~ 225 (327)
+..++.|..|++++|....+.... .... -+.|+.|+++|+. +. ..+.....++++|..||+|.| .
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hi----------se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHI----------SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhh----------chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 456777777777777665332211 1111 1245555555542 11 112222345666666666665 3
Q ss_pred CCCCCchhh---hcccccccccC----c---cccCCCCCCCeEeCcCCc
Q 040487 226 LSGSLLPHI---QKLKQQSLRKN----S---QVIGALPHLKQLNLSYNR 264 (327)
Q Consensus 226 l~~~~~~~l---~~L~~l~l~~~----~---~~l~~~~~L~~L~l~~n~ 264 (327)
++......+ +.|+++.+++| | -.+...|+|.+||+.|+-
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 333333322 22334444444 2 123566777777777663
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=3.2e-08 Score=92.52 Aligned_cols=120 Identities=29% Similarity=0.288 Sum_probs=52.4
Q ss_pred ccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccC
Q 040487 109 LQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQG 188 (327)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~ 188 (327)
|...+.++|.++ .+..++.-++.++.|++++|++... +.+..++.|+.||+++|.++ .+|. + ...+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~-l---------~~~g 231 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ-L---------SMVG 231 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc-c---------chhh
Confidence 444444444444 2223334444555555555555421 24445555555555555554 2221 0 1111
Q ss_pred CCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCC---C-chhhhcccccccccC
Q 040487 189 LVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGS---L-LPHIQKLKQQSLRKN 245 (327)
Q Consensus 189 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~---~-~~~l~~L~~l~l~~~ 245 (327)
|. |..|.+.+|.++ .+. .+.++.+|+.||+++|-+.+. . ...+..|+.|+|.+|
T Consensus 232 c~-L~~L~lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 232 CK-LQLLNLRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hh-heeeeecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 22 555555555554 211 234455555555555544431 1 123344455555444
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.1e-06 Score=74.29 Aligned_cols=209 Identities=17% Similarity=0.161 Sum_probs=103.2
Q ss_pred CCCEEEcccCcccccC-Cccc-ccCCCCCEEEccCcccccc--CcccccCCCCCcEEeCCCCccccccCCCCCCcccCch
Q 040487 25 NLERLTLSHNKLSGTI-PNSI-INASKLITLNLGYNYFSGL--IPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPS 100 (327)
Q Consensus 25 ~L~~L~l~~~~l~~~~-~~~l-~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~ 100 (327)
.++.+.+.++.+.... ...| ..++.++.+||.+|.+.+. +...+.+++.|+.|+++.|.+... -+..|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-------I~~lp- 117 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-------IKSLP- 117 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-------cccCc-
Confidence 3445555555554221 1112 2456677777777776632 223345677777777777765330 11122
Q ss_pred hhhhccccccEEEccCCccccc-CCccccCCCCCcEEEccCCcccCCCch--hc-cCCCCCCEEEccCCccccccCcccc
Q 040487 101 LVSNFSASLQEFNAYGCELKGS-IPQEIGNLSGLIVLNLFNNDLIGTIPK--TV-GGLQQLQGLDLFGNNLQGSIPYDLC 176 (327)
Q Consensus 101 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~-~~~~~L~~L~l~~n~~~~~~~~~l~ 176 (327)
.... +|+.|.+.+..+... ....+..++.+++|+++.|.+....-+ .. ..-+.++++.+..|...- +
T Consensus 118 --~p~~-nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-----w- 188 (418)
T KOG2982|consen 118 --LPLK-NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-----W- 188 (418)
T ss_pred --cccc-ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH-----H-
Confidence 1122 666666666655422 223344556666666666643311100 00 011233333333332210 0
Q ss_pred Cccccchhhc-cCCCCCCEEEcCCCcccccCC-ccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCC
Q 040487 177 NLKRLYSLLL-QGLVSLRELYLDSNKLSSSIP-SSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPH 254 (327)
Q Consensus 177 ~~~~L~~l~l-~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~ 254 (327)
+..-.+ .-+|++..+.+..|.+++.-. .....++.+-.|+++.+++.+ +.++ +.+..++.
T Consensus 189 ----~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ids--wasv------------D~Ln~f~~ 250 (418)
T KOG2982|consen 189 ----LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDS--WASV------------DALNGFPQ 250 (418)
T ss_pred ----HHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccccc--HHHH------------HHHcCCch
Confidence 000001 236678888888887764322 234556777788888887753 2222 23445677
Q ss_pred CCeEeCcCCcceee
Q 040487 255 LKQLNLSYNRLEGE 268 (327)
Q Consensus 255 L~~L~l~~n~l~~~ 268 (327)
|+.|.++++++.+.
T Consensus 251 l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 251 LVDLRVSENPLSDP 264 (418)
T ss_pred hheeeccCCccccc
Confidence 77777777776644
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=6.8e-07 Score=75.55 Aligned_cols=83 Identities=25% Similarity=0.217 Sum_probs=34.8
Q ss_pred EEEccCCCCcc--cCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCcccccc-CcccccCCCCCcEEeC
Q 040487 3 VINLIQNQLSG--HLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGL-IPNTFGNLRFLNWLSP 79 (327)
Q Consensus 3 ~L~l~~~~~~~--~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l 79 (327)
++||.+|.+++ ++. .+.+++|.|++|+|+.|++...+-..-....+|++|-|.+..+.-. .-..+..++++++|++
T Consensus 75 elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 75 ELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 34555555442 121 2223555555555555555422111002333555555544433211 1122344555555555
Q ss_pred CCCcccc
Q 040487 80 VQNYLMT 86 (327)
Q Consensus 80 ~~n~l~~ 86 (327)
+.|.+..
T Consensus 154 S~N~~rq 160 (418)
T KOG2982|consen 154 SDNSLRQ 160 (418)
T ss_pred ccchhhh
Confidence 5554433
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=1.6e-05 Score=71.50 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=31.2
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
.+++++.|++++|.++ .+|. + -++|++|.+++|.-...+|..+ ..+|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3566777777777666 4452 1 2247777776654433555433 246666666655
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=1.7e-06 Score=72.29 Aligned_cols=127 Identities=18% Similarity=0.195 Sum_probs=75.1
Q ss_pred CCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCc-----cccCccCCcEEecCCCcCC
Q 040487 153 GLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPS-----SFWNLEYILQIDLSSNSLS 227 (327)
Q Consensus 153 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~-----~l~~l~~L~~L~ls~n~l~ 227 (327)
.-|.|+++....|.+. ..+.... ...+..-.+|+.+.+.+|.|...... .+..+.+|+.||+..|-++
T Consensus 155 ~kp~Le~vicgrNRle-ngs~~~~------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 155 DKPKLEVVICGRNRLE-NGSKELS------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCCCceEEEeccchhc-cCcHHHH------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 4578888888888875 3332211 11122225789999999998743222 2356789999999999887
Q ss_pred CCCchh----h---hcccccccccC------c----ccc--CCCCCCCeEeCcCCcceeeCCCC--------CCCCCcce
Q 040487 228 GSLLPH----I---QKLKQQSLRKN------S----QVI--GALPHLKQLNLSYNRLEGEIPIK--------GPFRNFST 280 (327)
Q Consensus 228 ~~~~~~----l---~~L~~l~l~~~------~----~~l--~~~~~L~~L~l~~n~l~~~~~~~--------~~~~~L~~ 280 (327)
-..-.. + +.|+.|++.+| . ..+ ...|+|..|-..+|.+.+.+... ..+|-|..
T Consensus 228 ~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~ 307 (388)
T COG5238 228 LEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVD 307 (388)
T ss_pred hhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHH
Confidence 432221 1 23566666666 0 111 24567777777777655432211 44555666
Q ss_pred ecccCC
Q 040487 281 QSCFGN 286 (327)
Q Consensus 281 l~l~~n 286 (327)
+.+.||
T Consensus 308 le~ngN 313 (388)
T COG5238 308 LERNGN 313 (388)
T ss_pred HHHccC
Confidence 666666
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=4.6e-07 Score=67.96 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=73.5
Q ss_pred EEEccCCCCcccCChhhh--cCCCCCCEEEcccCcccccCCcccc-cCCCCCEEEccCccccccCcccccCCCCCcEEeC
Q 040487 3 VINLIQNQLSGHLPSTMG--CTLPNLERLTLSHNKLSGTIPNSII-NASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~--~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 79 (327)
.++|+.|.+. .+++... .....|..++|++|.+. ..|..|. ..+.++.+++++|.+. .+|..+..++.|+.|++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 4677777765 4554432 14556777888888888 5666665 4557888888888887 67877888888888888
Q ss_pred CCCccccccCCCCCCcccCchhhhhccccccEEEccCCccc
Q 040487 80 VQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELK 120 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (327)
+.|.+.. .|..+..+. ++-.|+..++...
T Consensus 108 ~~N~l~~-----------~p~vi~~L~-~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLNA-----------EPRVIAPLI-KLDMLDSPENARA 136 (177)
T ss_pred ccCcccc-----------chHHHHHHH-hHHHhcCCCCccc
Confidence 8888755 666666665 7777777776655
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=5.4e-05 Score=68.21 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=82.4
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
++.|++++|.++ .+| .+ -.+|++|.+++|.-...+|..+ .++|++|++++|.-...+|. .|+.|++.
T Consensus 54 l~~L~Is~c~L~-sLP-~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 54 SGRLYIKDCDIE-SLP-VL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred CCEEEeCCCCCc-ccC-CC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence 468999999888 788 22 2469999999875444667655 35899999999843335554 46777766
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCccc--ccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCC
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELK--GSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQ 158 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 158 (327)
.+.... +..+|++|+.|.+.++... ...+.. -.++|++|++++|... ..|+.+ ..+|+
T Consensus 121 ~n~~~~---------------L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L--P~SLk 180 (426)
T PRK15386 121 GSATDS---------------IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL--PESLQ 180 (426)
T ss_pred CCCCcc---------------cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc--cccCc
Confidence 554322 2334456777777543211 011111 1257888888887755 344333 25788
Q ss_pred EEEccCC
Q 040487 159 GLDLFGN 165 (327)
Q Consensus 159 ~L~l~~n 165 (327)
.|.++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 8888765
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=9.6e-06 Score=48.99 Aligned_cols=36 Identities=44% Similarity=0.610 Sum_probs=17.3
Q ss_pred CCCEEEcccCcccccCCcccccCCCCCEEEccCcccc
Q 040487 25 NLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFS 61 (327)
Q Consensus 25 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~ 61 (327)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33334555555555555555544
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1e-05 Score=48.87 Aligned_cols=37 Identities=32% Similarity=0.564 Sum_probs=24.5
Q ss_pred CCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCC
Q 040487 191 SLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSG 228 (327)
Q Consensus 191 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 228 (327)
+|++|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5777777777777 445556777777777777777763
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=3.5e-05 Score=61.79 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=63.8
Q ss_pred CCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccC-Cccc
Q 040487 49 KLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSI-PQEI 127 (327)
Q Consensus 49 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~ 127 (327)
....+||++|.+... +.|..++.|.+|.+.+|.++. +...+..+.++|+.|.+.+|++...- -..+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~-----------I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITR-----------IDPDLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCccee-----------eccchhhhccccceEEecCcchhhhhhcchh
Confidence 456677777776522 446667777777777777665 44445555446777777777765221 1235
Q ss_pred cCCCCCcEEEccCCcccCCC--c-hhccCCCCCCEEEccC
Q 040487 128 GNLSGLIVLNLFNNDLIGTI--P-KTVGGLQQLQGLDLFG 164 (327)
Q Consensus 128 ~~l~~L~~L~l~~n~~~~~~--~-~~~~~~~~L~~L~l~~ 164 (327)
+.+++|++|.+-+|.++..- . -.+..+|+|++||+..
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66777888877777766211 1 1345678888888765
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=1.4e-06 Score=65.44 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=37.5
Q ss_pred CchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCc
Q 040487 98 LPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPY 173 (327)
Q Consensus 98 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 173 (327)
+|..+...++.+++|++++|.+. .+|..++.++.|+.++++.|.+. ..|..+..+.++..|+..+|.+. +++.
T Consensus 68 fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 68 FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence 44444443335555555555555 34444555556666666655554 33444444555555555555554 3443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=7.9e-05 Score=59.80 Aligned_cols=126 Identities=18% Similarity=0.222 Sum_probs=74.5
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
.+++.+.++. .-..++........+|+++|.+. .+ +.|..++.|.+|.+.+|+++.+.|.--..+++|..|.+++|
T Consensus 23 e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 23 ELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccc--chhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 3455555443 11123334455667777777776 22 34566777888888888877555554445667788887777
Q ss_pred ccccccCCCCCCcccCchhhhhccccccEEEccCCcccccC---CccccCCCCCcEEEccCCc
Q 040487 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSI---PQEIGNLSGLIVLNLFNND 142 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~n~ 142 (327)
.+..+ .. + ..+..++ +|++|.+-+|.++..- ...+.++++|+.||+++-.
T Consensus 99 si~~l-------~d-l-~pLa~~p-~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 99 SIQEL-------GD-L-DPLASCP-KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chhhh-------hh-c-chhccCC-ccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 76552 11 1 1234444 7788877777766321 2345667778887776543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2.3e-05 Score=76.03 Aligned_cols=61 Identities=23% Similarity=0.325 Sum_probs=28.5
Q ss_pred hhhcCCCCCCEEEcccCccccc-CCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 18 TMGCTLPNLERLTLSHNKLSGT-IPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 18 ~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
.++..+|.|++|.+.+-.+... ......++|+|..||++++.++.. .+++++++|++|.+.
T Consensus 142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMR 203 (699)
T ss_pred HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhcc
Confidence 3444555555555555444311 112223455555555555555422 344555555555543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=3.8e-05 Score=74.58 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=10.3
Q ss_pred ccCCcEEecCCCcCCCCC
Q 040487 213 LEYILQIDLSSNSLSGSL 230 (327)
Q Consensus 213 l~~L~~L~ls~n~l~~~~ 230 (327)
+|+|+.||.|++.+....
T Consensus 249 LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEI 266 (699)
T ss_pred CccccEEecCCcchhHHH
Confidence 566666666665555433
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.19 E-value=2.7e-05 Score=68.96 Aligned_cols=270 Identities=17% Similarity=0.123 Sum_probs=135.0
Q ss_pred CeEEEccCCCCccc-CChhhhcCCCCCCEEEcccCc-ccccCCccc-ccCCCCCEEEccCcc-ccccCcc-cccCCCCCc
Q 040487 1 MIVINLIQNQLSGH-LPSTMGCTLPNLERLTLSHNK-LSGTIPNSI-INASKLITLNLGYNY-FSGLIPN-TFGNLRFLN 75 (327)
Q Consensus 1 L~~L~l~~~~~~~~-lp~~~~~~l~~L~~L~l~~~~-l~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~ 75 (327)
|+.|.+.|++-.+. -...+...+|+++.|.+.+|. +++..-..+ ..+++|++|++..|. ++...-. -...+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 45677777754422 223455578888888888885 332221222 367888888888854 3322222 223678888
Q ss_pred EEeCCCCccccccCCCCCCccc-----------------Cc-hhhhhcc---ccccEEEccCCccc-ccC-CccccCCCC
Q 040487 76 WLSPVQNYLMTKPLAANPLRGF-----------------LP-SLVSNFS---ASLQEFNAYGCELK-GSI-PQEIGNLSG 132 (327)
Q Consensus 76 ~L~l~~n~l~~~~l~~~~~~~~-----------------~~-~~~~~~~---~~L~~L~l~~~~~~-~~~-~~~~~~l~~ 132 (327)
+|+++.+.-.. .+++... .+ ..+..+. ..+..+++..|... ... -..-..+..
T Consensus 220 ~lNlSwc~qi~----~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 220 YLNLSWCPQIS----GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HhhhccCchhh----cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 88888765421 1111100 00 0111110 12334444444322 110 011233567
Q ss_pred CcEEEccCCcc-cCCCchhc-cCCCCCCEEEccCCcc-ccccCccccCccccchhhccCCCCCCEEEcCCCccccc--CC
Q 040487 133 LIVLNLFNNDL-IGTIPKTV-GGLQQLQGLDLFGNNL-QGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSS--IP 207 (327)
Q Consensus 133 L~~L~l~~n~~-~~~~~~~~-~~~~~L~~L~l~~n~~-~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~--~~ 207 (327)
|+++..+++.. .+..-.++ ....+|+.+.++.|+- +......++ .+++.|+.+++..+..... +.
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----------rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----------RNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----------cCChhhhhhcccccceehhhhHh
Confidence 88888887643 33223333 3568999999998763 222212222 2345677777766643311 22
Q ss_pred ccccCccCCcEEecCCCc-CCCCCch-------hhhcccccccccCc-------cccCCCCCCCeEeCcCCcceeeCCC-
Q 040487 208 SSFWNLEYILQIDLSSNS-LSGSLLP-------HIQKLKQQSLRKNS-------QVIGALPHLKQLNLSYNRLEGEIPI- 271 (327)
Q Consensus 208 ~~l~~l~~L~~L~ls~n~-l~~~~~~-------~l~~L~~l~l~~~~-------~~l~~~~~L~~L~l~~n~l~~~~~~- 271 (327)
..-..++.|+.+.+++|. +++.... ....+..+.++++| ..+..+++|+.+++-+++--..-+.
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 223456777777777774 3333211 12223444444442 2345566777777766642211111
Q ss_pred --CCCCCCcceeccc
Q 040487 272 --KGPFRNFSTQSCF 284 (327)
Q Consensus 272 --~~~~~~L~~l~l~ 284 (327)
..++|++++..+.
T Consensus 446 ~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 446 RFATHLPNIKVHAYF 460 (483)
T ss_pred HHHhhCccceehhhc
Confidence 1556666555543
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.04 E-value=2.3e-05 Score=69.38 Aligned_cols=246 Identities=15% Similarity=0.062 Sum_probs=116.4
Q ss_pred CCCEEEcccCcccccC--CcccccCCCCCEEEccCccccccC-c-ccccCCCCCcEEeCCCCccccccCCCCCCcccCch
Q 040487 25 NLERLTLSHNKLSGTI--PNSIINASKLITLNLGYNYFSGLI-P-NTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPS 100 (327)
Q Consensus 25 ~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~ 100 (327)
.|+.|.++++.-.+.- -..-..++++++|.+.+|...+.. - ..-..+++|++|++..|.... ...-.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT---------~~~Lk 209 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT---------DVSLK 209 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH---------HHHHH
Confidence 5788888887544221 122347899999999888743221 1 112367899999988854311 11112
Q ss_pred hhhhccccccEEEccCCccccc--CCccccCCCCCcEEEccCCccc-C-CCchhccCCCCCCEEEccCCc-cccccCccc
Q 040487 101 LVSNFSASLQEFNAYGCELKGS--IPQEIGNLSGLIVLNLFNNDLI-G-TIPKTVGGLQQLQGLDLFGNN-LQGSIPYDL 175 (327)
Q Consensus 101 ~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~~~-~-~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l 175 (327)
.+..-.++|++++++.|.-... +.....+...++.+...+|.=. . .+...-.....+..+++..|. ++++- +
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~---~ 286 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED---L 286 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH---H
Confidence 2333334899999998864321 1223344555666666654311 0 000111233445556655542 22111 0
Q ss_pred cCccccchhhccCCCCCCEEEcCCCc-ccccCCccc-cCccCCcEEecCCCc-CCCCCchhh----hcccccccccC---
Q 040487 176 CNLKRLYSLLLQGLVSLRELYLDSNK-LSSSIPSSF-WNLEYILQIDLSSNS-LSGSLLPHI----QKLKQQSLRKN--- 245 (327)
Q Consensus 176 ~~~~~L~~l~l~~~~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~ls~n~-l~~~~~~~l----~~L~~l~l~~~--- 245 (327)
... -.++..|++++.+++. +++..-.++ .+.++|+.+-++.++ ++...+..+ ..|+.+++.++
T Consensus 287 ~~i-------~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 287 WLI-------ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred HHH-------hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 000 0123345555555442 222222222 234555555555553 333222222 22444443333
Q ss_pred -----ccccCCCCCCCeEeCcCCcceeeC-----CC-CCCCCCcceecccCCCCC
Q 040487 246 -----SQVIGALPHLKQLNLSYNRLEGEI-----PI-KGPFRNFSTQSCFGNYAL 289 (327)
Q Consensus 246 -----~~~l~~~~~L~~L~l~~n~l~~~~-----~~-~~~~~~L~~l~l~~n~~l 289 (327)
...-.+++.|+.+.+++|.+.... .. ......+..+.++++|.+
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 111235666777777766432211 11 133455666666666554
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.01 E-value=0.0025 Score=48.26 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=28.9
Q ss_pred ChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 16 PSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 16 p~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+...+..+.+|+.+.+.. .+......+|..+.+|+.+.+.++ +......+|.++.+++.+++.
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444666777777664 344344555666666777776653 443333456666666666653
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.0005 Score=57.48 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=66.5
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCc--cccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCc
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYN--YFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLP 99 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~ 99 (327)
.+..|+.+++.+..++. . ..|-.+++|+.|.++.| ++...++--...+++|++|++++|++.. ++. +
T Consensus 41 ~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lst------l- 109 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LST------L- 109 (260)
T ss_pred cccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccc------c-
Confidence 67778888888777762 2 23456788888888888 5555554445566888888888887743 111 1
Q ss_pred hhhhhccccccEEEccCCcccccC---CccccCCCCCcEEEcc
Q 040487 100 SLVSNFSASLQEFNAYGCELKGSI---PQEIGNLSGLIVLNLF 139 (327)
Q Consensus 100 ~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~ 139 (327)
..+.++. +|..|++++|..+... ...|.-+++|++|+-.
T Consensus 110 ~pl~~l~-nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 110 RPLKELE-NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred chhhhhc-chhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 1233444 6888888888766311 1234446777776543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0013 Score=55.07 Aligned_cols=85 Identities=24% Similarity=0.285 Sum_probs=37.9
Q ss_pred CCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCc--cccccCccccCccccchhhccCCCCCCEEEcCCCccccc-C
Q 040487 130 LSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNN--LQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSS-I 206 (327)
Q Consensus 130 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~-~ 206 (327)
+..|+.+++.+..++. + ..+..+++|+.|.++.|. +.+.++...- .+|+|+++++++|+++.. -
T Consensus 42 ~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-----------~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAE-----------KAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred ccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhh-----------hCCceeEEeecCCccccccc
Confidence 3445555555444431 1 123345566666666662 2222221111 124566666666665520 0
Q ss_pred CccccCccCCcEEecCCCcCC
Q 040487 207 PSSFWNLEYILQIDLSSNSLS 227 (327)
Q Consensus 207 ~~~l~~l~~L~~L~ls~n~l~ 227 (327)
-..+..+++|..|++.+|..+
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcchhhhhcccCCcc
Confidence 011234455555566555444
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.62 E-value=0.0066 Score=45.87 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=22.4
Q ss_pred CcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 41 PNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 41 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
..+|.++.+|+.+.+.. .+......+|.++++|+.+++..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc
Confidence 34577788888888874 455444566778878888886553
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0002 Score=60.45 Aligned_cols=77 Identities=27% Similarity=0.276 Sum_probs=46.7
Q ss_pred CCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc-hhhhcccccccccC-------ccccCCCCCCCeEeCcC
Q 040487 191 SLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL-PHIQKLKQQSLRKN-------SQVIGALPHLKQLNLSY 262 (327)
Q Consensus 191 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~L~~l~l~~~-------~~~l~~~~~L~~L~l~~ 262 (327)
+.+.|+..+|.+.++ .....++.|++|.||-|+++...| ....+|++|+|+.| -..+.++|+|+.|+|..
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 456666666666642 123456677777777777665332 34555666666555 23456777788888877
Q ss_pred CcceeeC
Q 040487 263 NRLEGEI 269 (327)
Q Consensus 263 n~l~~~~ 269 (327)
|+-.+.-
T Consensus 98 NPCc~~a 104 (388)
T KOG2123|consen 98 NPCCGEA 104 (388)
T ss_pred CCccccc
Confidence 7766543
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.49 E-value=1e-05 Score=75.18 Aligned_cols=161 Identities=22% Similarity=0.206 Sum_probs=81.9
Q ss_pred EEEccCCCCcccCChhhh---cCCCCCCEEEcccCcccccCCccc----ccC-CCCCEEEccCcccccc----CcccccC
Q 040487 3 VINLIQNQLSGHLPSTMG---CTLPNLERLTLSHNKLSGTIPNSI----INA-SKLITLNLGYNYFSGL----IPNTFGN 70 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~---~~l~~L~~L~l~~~~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~l~~ 70 (327)
.+.+.+|.+.+.....+. ...+.|+.|++++|.+.+.....+ ... ..+++|++..|.++.+ +...+..
T Consensus 91 ~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~ 170 (478)
T KOG4308|consen 91 HLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK 170 (478)
T ss_pred HhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc
Confidence 355666666543332222 245667777777777763322222 121 3456666766766543 3344555
Q ss_pred CCCCcEEeCCCCccccccCCCCCCcccCchhhhh---ccccccEEEccCCccccc----CCccccCCCC-CcEEEccCCc
Q 040487 71 LRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSN---FSASLQEFNAYGCELKGS----IPQEIGNLSG-LIVLNLFNND 142 (327)
Q Consensus 71 l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~----~~~~~~~l~~-L~~L~l~~n~ 142 (327)
...++.++++.|.+... +. ..++..+.. ...++++|.+.+|.++.. ....+...+. +..+++..|.
T Consensus 171 ~~~l~~l~l~~n~l~~~--g~----~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIEL--GL----LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred ccchhHHHHHhcccchh--hh----HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 67777777777766321 00 112333332 223677777777766522 1122333333 5556666666
Q ss_pred ccCCC----chhccCC-CCCCEEEccCCcccc
Q 040487 143 LIGTI----PKTVGGL-QQLQGLDLFGNNLQG 169 (327)
Q Consensus 143 ~~~~~----~~~~~~~-~~L~~L~l~~n~~~~ 169 (327)
+.+.. ...+..+ +.++.++++.|.++.
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 55321 1222333 455666666666653
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.00014 Score=61.38 Aligned_cols=58 Identities=22% Similarity=0.157 Sum_probs=29.3
Q ss_pred CCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCcc
Q 040487 23 LPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYL 84 (327)
Q Consensus 23 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 84 (327)
+.+.+.|++.+|.++++ .....|+.|++|.|+-|+++.. ..+..+++|++|.|..|.+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccc
Confidence 34445555555555522 1223555555555555555532 2244555555555555544
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.18 E-value=1.4e-05 Score=74.25 Aligned_cols=194 Identities=26% Similarity=0.264 Sum_probs=104.9
Q ss_pred CCEEEccCccccccC----cccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCccccc---
Q 040487 50 LITLNLGYNYFSGLI----PNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGS--- 122 (327)
Q Consensus 50 L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--- 122 (327)
+.++.|.+|.+.... ..++.....|..|++++|.+...+ ...+-..+......+++|++..|.++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g------~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~ 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEG------ARLLCEGLRLPQCLLQTLELVSCSLTSEGAA 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHh------HHHHHhhcccchHHHHHHHhhcccccccchH
Confidence 666677777665332 234555677777777777664321 0011112222212566677777766632
Q ss_pred -CCccccCCCCCcEEEccCCcccC----CCchhcc----CCCCCCEEEccCCccccccCccccCccccchhhccCCCC-C
Q 040487 123 -IPQEIGNLSGLIVLNLFNNDLIG----TIPKTVG----GLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVS-L 192 (327)
Q Consensus 123 -~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~-L 192 (327)
+...+.....++.++++.|.+.. .++..+. ...++++|.+++|.++..... .....+...+. +
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~-------~l~~~l~~~~~~~ 235 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA-------LLDEVLASGESLL 235 (478)
T ss_pred HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH-------HHHHHHhccchhh
Confidence 33445556667777777776531 1122222 356777777877776622111 11112222333 5
Q ss_pred CEEEcCCCccccc----CCccccCc-cCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCccee
Q 040487 193 RELYLDSNKLSSS----IPSSFWNL-EYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEG 267 (327)
Q Consensus 193 ~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~ 267 (327)
.++++..|.+.+. +...+... +.++.++++.|.+++.....+. ..+..++.++.+.++.|++..
T Consensus 236 ~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~-----------~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 236 RELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA-----------EVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH-----------HHHhhhHHHHHhhcccCcccc
Confidence 5677777777653 22233334 5667888888888776555554 334455667777777666653
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.10 E-value=0.0017 Score=60.86 Aligned_cols=127 Identities=20% Similarity=0.099 Sum_probs=68.3
Q ss_pred eEEEccCCCCcccC-ChhhhcCCCCCCEEEcccC-cccccC----CcccccCCCCCEEEccCcc-ccccCccccc-CCCC
Q 040487 2 IVINLIQNQLSGHL-PSTMGCTLPNLERLTLSHN-KLSGTI----PNSIINASKLITLNLGYNY-FSGLIPNTFG-NLRF 73 (327)
Q Consensus 2 ~~L~l~~~~~~~~l-p~~~~~~l~~L~~L~l~~~-~l~~~~----~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~ 73 (327)
+.+.+.++.-.... -..+...++.|+.|+++++ ...... ......+.+|+.++++++. +++..-..+. .+++
T Consensus 191 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~ 270 (482)
T KOG1947|consen 191 KRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPN 270 (482)
T ss_pred hHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCC
Confidence 34455555322221 1233347889999999873 221111 1223456888999998887 5533323333 3788
Q ss_pred CcEEeCCCCc-cccccCCCCCCcccCchhhhhccccccEEEccCCccccc--CCccccCCCCCcEEEc
Q 040487 74 LNWLSPVQNY-LMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGS--IPQEIGNLSGLIVLNL 138 (327)
Q Consensus 74 L~~L~l~~n~-l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l 138 (327)
|++|.+.++. ++. .--..+....+.|++|++++|..... +......+++++.+.+
T Consensus 271 L~~L~l~~c~~lt~----------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 271 LETLSLSNCSNLTD----------EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred cceEccCCCCccch----------hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 9999877766 333 11122333333799999988865411 2222333555555443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.86 E-value=0.0013 Score=61.65 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCCCCCEEEcccCc-cccc-CCcccccCCCCCEEEccCc-cccccCc----ccccCCCCCcEEeCCCCc-cccccCCCCC
Q 040487 22 TLPNLERLTLSHNK-LSGT-IPNSIINASKLITLNLGYN-YFSGLIP----NTFGNLRFLNWLSPVQNY-LMTKPLAANP 93 (327)
Q Consensus 22 ~l~~L~~L~l~~~~-l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~~----~~l~~l~~L~~L~l~~n~-l~~~~l~~~~ 93 (327)
.++.|+.+.+.++. ++.. .-.....++.|+.|+++++ ......+ .....+.+|++|+++.+. +++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd------- 258 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD------- 258 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-------
Confidence 35666666666552 2211 1123345666666666652 1111111 122344566666655554 221
Q ss_pred CcccCchhhhhccccccEEEccCCc-cccc-CCccccCCCCCcEEEccCCc
Q 040487 94 LRGFLPSLVSNFSASLQEFNAYGCE-LKGS-IPQEIGNLSGLIVLNLFNND 142 (327)
Q Consensus 94 ~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~n~ 142 (327)
..-..+....++|+.|.+.+|. ++.. +......+++|++|+++++.
T Consensus 259 ---~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 259 ---IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred ---hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 1111222212256666655555 2321 11222334556666666554
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.0079 Score=30.15 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=8.2
Q ss_pred CCEEEccCccccccCcccc
Q 040487 50 LITLNLGYNYFSGLIPNTF 68 (327)
Q Consensus 50 L~~L~L~~n~l~~~~~~~l 68 (327)
|++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 344333
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.87 E-value=0.011 Score=29.67 Aligned_cols=19 Identities=53% Similarity=0.704 Sum_probs=10.8
Q ss_pred CCEEEcccCcccccCCcccc
Q 040487 26 LERLTLSHNKLSGTIPNSII 45 (327)
Q Consensus 26 L~~L~l~~~~l~~~~~~~l~ 45 (327)
|++|++++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566666666666 4554443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.51 E-value=0.038 Score=25.68 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=5.8
Q ss_pred CCCeEeCcCCcce
Q 040487 254 HLKQLNLSYNRLE 266 (327)
Q Consensus 254 ~L~~L~l~~n~l~ 266 (327)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=0.023 Score=45.98 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=9.2
Q ss_pred cCCcEEecCCC-cCCCCCch
Q 040487 214 EYILQIDLSSN-SLSGSLLP 232 (327)
Q Consensus 214 ~~L~~L~ls~n-~l~~~~~~ 232 (327)
++|+.|++++| +||+....
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred cchheeeccCCCeechhHHH
Confidence 45555555555 34444333
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.62 E-value=0.066 Score=27.29 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=4.6
Q ss_pred CCcEEecCCCcCC
Q 040487 215 YILQIDLSSNSLS 227 (327)
Q Consensus 215 ~L~~L~ls~n~l~ 227 (327)
+|+.|++++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.23 E-value=0.027 Score=45.55 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=14.9
Q ss_pred cccEEEccCCcccccCCccccCCCCCcEEEccCC
Q 040487 108 SLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNN 141 (327)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 141 (327)
.++.++.+++.+..+--+.+..+++++.|.+.+|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3444555555444332233344444444444444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.33 E-value=1.3 Score=22.85 Aligned_cols=13 Identities=46% Similarity=0.468 Sum_probs=5.8
Q ss_pred CCcEEEccCCccc
Q 040487 132 GLIVLNLFNNDLI 144 (327)
Q Consensus 132 ~L~~L~l~~n~~~ 144 (327)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.33 E-value=1.3 Score=22.85 Aligned_cols=13 Identities=46% Similarity=0.468 Sum_probs=5.8
Q ss_pred CCcEEEccCCccc
Q 040487 132 GLIVLNLFNNDLI 144 (327)
Q Consensus 132 ~L~~L~l~~n~~~ 144 (327)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.84 E-value=0.031 Score=46.34 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=60.4
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
.+...+.||++.|++. .+-..|+.++.|..++++.|++. ..|..+..+..++.++++.|.... .|..
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-----------~p~s 106 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-----------QPKS 106 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-----------CCcc
Confidence 6677888888888776 34445666777777888877776 667777777777777777776654 5666
Q ss_pred hhhccccccEEEccCCccc
Q 040487 102 VSNFSASLQEFNAYGCELK 120 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~ 120 (327)
++..+ .+++++.-.+.+.
T Consensus 107 ~~k~~-~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEP-HPKKNEQKKTEFF 124 (326)
T ss_pred ccccC-CcchhhhccCcch
Confidence 66666 7777777766654
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.73 E-value=0.9 Score=42.57 Aligned_cols=68 Identities=26% Similarity=0.234 Sum_probs=38.8
Q ss_pred CCCCCCEEEcCCCccccc--CCccccCccCCcEEecCCC--cCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCC
Q 040487 188 GLVSLRELYLDSNKLSSS--IPSSFWNLEYILQIDLSSN--SLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYN 263 (327)
Q Consensus 188 ~~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~ls~n--~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n 263 (327)
..+.+..+++++|++... +...-...|+|..|+|++| .+.. -.++.+++ ...|++|.+.||
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k-------------~l~Leel~l~GN 280 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLK-------------GLPLEELVLEGN 280 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhc-------------CCCHHHeeecCC
Confidence 355677777777766521 2222234677777777777 2221 11222222 245888888888
Q ss_pred cceeeCC
Q 040487 264 RLEGEIP 270 (327)
Q Consensus 264 ~l~~~~~ 270 (327)
++.+.+.
T Consensus 281 Plc~tf~ 287 (585)
T KOG3763|consen 281 PLCTTFS 287 (585)
T ss_pred ccccchh
Confidence 8876543
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=79.22 E-value=13 Score=34.56 Aligned_cols=76 Identities=13% Similarity=0.007 Sum_probs=43.1
Q ss_pred CCCEEEcCCCcccccCCc--cccCccCCcEEecCCCcCCC-----CC--chhh-----hcccccccccC---------cc
Q 040487 191 SLRELYLDSNKLSSSIPS--SFWNLEYILQIDLSSNSLSG-----SL--LPHI-----QKLKQQSLRKN---------SQ 247 (327)
Q Consensus 191 ~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~ls~n~l~~-----~~--~~~l-----~~L~~l~l~~~---------~~ 247 (327)
.+++|.+.+|.+.++.-. .+..-+..+.+++.+..-.. .. +... .-+..+.++.+ ..
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 478888888887765433 23445667777776543211 10 0000 11333445554 23
Q ss_pred ccCCCCCCCeEeCcCCcce
Q 040487 248 VIGALPHLKQLNLSYNRLE 266 (327)
Q Consensus 248 ~l~~~~~L~~L~l~~n~l~ 266 (327)
.+..-+.+.+|++++|...
T Consensus 435 ~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred hhccCcccccccccCCCcc
Confidence 4456678999999999776
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.82 E-value=1.9 Score=22.52 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=11.3
Q ss_pred CCCCeEeCcCCcce
Q 040487 253 PHLKQLNLSYNRLE 266 (327)
Q Consensus 253 ~~L~~L~l~~n~l~ 266 (327)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57888888888886
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.76 E-value=0.074 Score=44.18 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=64.7
Q ss_pred ccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCccccc
Q 040487 43 SIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGS 122 (327)
Q Consensus 43 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 122 (327)
.+......+.||++.|++. .....|+.++.|..|+++.|.+.- .|.+++... .+..+....|... .
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-----------~~~d~~q~~-e~~~~~~~~n~~~-~ 102 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-----------LPKDAKQQR-ETVNAASHKNNHS-Q 102 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-----------ChhhHHHHH-HHHHHHhhccchh-h
Confidence 3445667788888888876 344557778888888888877633 777777665 6666777667665 6
Q ss_pred CCccccCCCCCcEEEccCCccc
Q 040487 123 IPQEIGNLSGLIVLNLFNNDLI 144 (327)
Q Consensus 123 ~~~~~~~l~~L~~L~l~~n~~~ 144 (327)
.|.++...+.+++++..++.+.
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred CCccccccCCcchhhhccCcch
Confidence 7888888888888888888754
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.11 E-value=1.4 Score=23.38 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=7.0
Q ss_pred CCcEEecCCCcCCC
Q 040487 215 YILQIDLSSNSLSG 228 (327)
Q Consensus 215 ~L~~L~ls~n~l~~ 228 (327)
+|++|+|++|.++.
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 44555555555543
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.46 E-value=3 Score=21.72 Aligned_cols=14 Identities=57% Similarity=0.854 Sum_probs=9.0
Q ss_pred CCCCeEeCcCCcce
Q 040487 253 PHLKQLNLSYNRLE 266 (327)
Q Consensus 253 ~~L~~L~l~~n~l~ 266 (327)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 35666666666666
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.51 E-value=2.9 Score=39.37 Aligned_cols=65 Identities=26% Similarity=0.170 Sum_probs=42.9
Q ss_pred cCccCCcEEecCCCcCCCC-CchhhhcccccccccCccccCCCCCCCeEeCcCC--cceeeCCCC--CCCCCcceecccC
Q 040487 211 WNLEYILQIDLSSNSLSGS-LLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYN--RLEGEIPIK--GPFRNFSTQSCFG 285 (327)
Q Consensus 211 ~~l~~L~~L~ls~n~l~~~-~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n--~l~~~~~~~--~~~~~L~~l~l~~ 285 (327)
...+.+..+++++|++-.. ....+ -+..|+|+.|+|++| .+.. .+.. .+...|+++.+.|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~ssl--------------sq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~G 279 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSL--------------SQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEG 279 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHH--------------HHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecC
Confidence 3567788888999887531 11112 245689999999999 4442 2222 3344689999999
Q ss_pred CCCCC
Q 040487 286 NYALG 290 (327)
Q Consensus 286 n~~l~ 290 (327)
||-..
T Consensus 280 NPlc~ 284 (585)
T KOG3763|consen 280 NPLCT 284 (585)
T ss_pred Ccccc
Confidence 98443
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=54.83 E-value=9 Score=19.61 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=7.3
Q ss_pred CCCCeEeCcCCc
Q 040487 253 PHLKQLNLSYNR 264 (327)
Q Consensus 253 ~~L~~L~l~~n~ 264 (327)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666663
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=48.15 E-value=1.1e+02 Score=28.74 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCEEEcCCCcccccCCc----cccCccCCcEEecCCCcCCC
Q 040487 192 LRELYLDSNKLSSSIPS----SFWNLEYILQIDLSSNSLSG 228 (327)
Q Consensus 192 L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~ls~n~l~~ 228 (327)
++.+.++.+.++ ..+. .+..-+.+..|++++|....
T Consensus 415 l~el~ls~~~lk-a~l~s~in~l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 415 LAELSLSPGPLK-AGLESAINKLLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred ccCcccCCCccc-ccHHHHHHhhccCcccccccccCCCccc
Confidence 566677777665 2222 23345678888888887654
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.63 E-value=45 Score=38.18 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=28.7
Q ss_pred EccCCCCcccCChhhhcCCCCCCEEEcccCccc
Q 040487 5 NLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLS 37 (327)
Q Consensus 5 ~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~ 37 (327)
||++|+|. .+|...+..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 68999998 788888889999999999999776
Done!