Query 040487
Match_columns 327
No_of_seqs 216 out of 2857
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 14:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-36 7E-41 297.3 25.4 302 1-307 370-755 (768)
2 3rgz_A Protein brassinosteroid 100.0 8E-36 2.7E-40 293.2 19.7 81 214-294 632-722 (768)
3 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-34 6E-39 254.6 20.8 253 1-293 52-308 (313)
4 3v47_A TOLL-like receptor 5B a 100.0 1.7E-33 5.8E-38 260.7 20.4 281 1-293 32-412 (455)
5 2id5_A Lingo-1, leucine rich r 100.0 2.5E-32 8.5E-37 254.5 21.6 277 1-289 34-333 (477)
6 3v47_A TOLL-like receptor 5B a 100.0 7.5E-32 2.6E-36 249.7 20.0 261 1-272 56-414 (455)
7 4eco_A Uncharacterized protein 100.0 1.6E-32 5.4E-37 264.2 14.5 288 1-295 208-584 (636)
8 3t6q_A CD180 antigen; protein- 100.0 3.9E-31 1.3E-35 253.4 23.6 283 1-286 35-435 (606)
9 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-30 4.2E-35 245.5 23.7 138 152-290 321-482 (520)
10 3t6q_A CD180 antigen; protein- 100.0 7.6E-31 2.6E-35 251.4 22.0 278 3-286 16-386 (606)
11 4eco_A Uncharacterized protein 100.0 3.5E-31 1.2E-35 254.9 18.4 279 1-289 251-600 (636)
12 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-30 3.9E-35 250.1 20.8 120 1-122 34-168 (606)
13 2id5_A Lingo-1, leucine rich r 100.0 1.9E-30 6.4E-35 241.8 21.6 283 3-302 15-321 (477)
14 1ziw_A TOLL-like receptor 3; i 100.0 9.4E-30 3.2E-34 247.0 27.4 285 2-287 76-441 (680)
15 4ecn_A Leucine-rich repeat pro 100.0 2.9E-31 1E-35 261.0 16.3 267 1-285 450-785 (876)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-30 6.5E-35 246.6 21.3 138 152-290 350-511 (562)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1E-30 3.5E-35 247.6 19.2 284 1-289 28-485 (549)
18 3o6n_A APL1; leucine-rich repe 100.0 2.5E-30 8.4E-35 235.0 20.5 267 1-287 47-350 (390)
19 2z63_A TOLL-like receptor 4, v 100.0 5E-30 1.7E-34 243.9 22.1 119 1-121 30-163 (570)
20 3vq2_A TLR4, TOLL-like recepto 100.0 4.4E-30 1.5E-34 246.1 21.1 85 1-86 82-167 (606)
21 1xku_A Decorin; proteoglycan, 100.0 3.1E-29 1.1E-33 222.6 23.2 262 1-294 33-312 (330)
22 1ogq_A PGIP-2, polygalacturona 100.0 4.3E-30 1.5E-34 226.5 17.3 227 1-267 78-306 (313)
23 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-29 5.5E-34 224.7 20.9 270 1-303 35-322 (332)
24 2z63_A TOLL-like receptor 4, v 100.0 4.1E-29 1.4E-33 237.6 23.8 64 22-85 98-162 (570)
25 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-29 1.6E-33 242.1 24.6 274 1-287 27-364 (680)
26 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-29 4.6E-34 251.3 20.7 275 1-287 26-373 (844)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-29 9.5E-34 238.6 21.8 276 2-286 34-460 (562)
28 3oja_B Anopheles plasmodium-re 100.0 1.4E-29 4.9E-34 242.1 19.9 268 1-288 53-357 (597)
29 4ecn_A Leucine-rich repeat pro 100.0 1.8E-29 6.1E-34 248.3 19.6 277 1-287 493-838 (876)
30 4fmz_A Internalin; leucine ric 100.0 1.8E-28 6.2E-33 219.1 23.2 260 1-287 46-322 (347)
31 2z66_A Variable lymphocyte rec 100.0 2.5E-28 8.5E-33 214.5 21.3 245 2-288 10-260 (306)
32 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-28 4.9E-33 243.9 20.5 81 1-82 99-184 (844)
33 2z80_A TOLL-like receptor 2, v 100.0 5E-29 1.7E-33 223.3 14.7 263 3-293 35-318 (353)
34 4g8a_A TOLL-like receptor 4; l 100.0 5.5E-28 1.9E-32 232.2 22.2 134 1-147 54-189 (635)
35 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-28 7.6E-33 231.6 19.1 187 3-204 9-210 (549)
36 4fcg_A Uncharacterized protein 100.0 2.8E-28 9.5E-33 216.3 18.4 223 22-286 79-311 (328)
37 1o6v_A Internalin A; bacterial 100.0 9.3E-28 3.2E-32 223.0 22.8 268 1-287 70-386 (466)
38 4fcg_A Uncharacterized protein 100.0 3.8E-28 1.3E-32 215.4 18.2 223 1-266 83-314 (328)
39 2z66_A Variable lymphocyte rec 100.0 9E-28 3.1E-32 210.9 20.0 231 1-269 30-264 (306)
40 1xku_A Decorin; proteoglycan, 100.0 3.3E-27 1.1E-31 209.5 23.8 256 1-286 54-329 (330)
41 1ozn_A Reticulon 4 receptor; N 100.0 4.8E-28 1.7E-32 210.5 17.5 244 2-286 14-258 (285)
42 3zyi_A Leucine-rich repeat-con 100.0 2.7E-27 9.3E-32 219.0 22.6 242 3-287 58-301 (452)
43 3zyj_A Leucine-rich repeat-con 100.0 3.6E-27 1.2E-31 217.5 23.2 242 3-288 47-291 (440)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-27 7.2E-32 211.0 19.9 256 1-287 56-331 (332)
45 3bz5_A Internalin-J, INLJ; leu 100.0 5.3E-27 1.8E-31 217.0 22.5 265 1-303 44-341 (457)
46 2z7x_B TOLL-like receptor 1, v 100.0 7.3E-28 2.5E-32 226.6 16.9 140 128-270 321-485 (520)
47 3o6n_A APL1; leucine-rich repe 100.0 4.1E-27 1.4E-31 213.7 20.3 255 22-293 43-334 (390)
48 1o6v_A Internalin A; bacterial 100.0 1E-26 3.6E-31 215.9 22.2 288 1-309 48-383 (466)
49 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-27 1.2E-31 205.1 16.7 208 1-231 34-242 (285)
50 3zyi_A Leucine-rich repeat-con 99.9 2.4E-26 8.3E-31 212.6 22.0 228 1-268 77-305 (452)
51 3zyj_A Leucine-rich repeat-con 99.9 5.2E-26 1.8E-30 209.7 22.4 228 1-268 66-294 (440)
52 1wwl_A Monocyte differentiatio 99.9 5.7E-28 1.9E-32 212.9 8.6 244 1-287 45-307 (312)
53 4fmz_A Internalin; leucine ric 99.9 1E-25 3.4E-30 201.3 22.4 259 1-287 68-344 (347)
54 3oja_B Anopheles plasmodium-re 99.9 6.8E-26 2.3E-30 216.6 22.2 255 22-293 49-340 (597)
55 3bz5_A Internalin-J, INLJ; leu 99.9 2.6E-25 8.8E-30 205.7 24.9 252 1-287 66-350 (457)
56 2z80_A TOLL-like receptor 2, v 99.9 3.5E-27 1.2E-31 211.3 10.9 245 1-270 54-318 (353)
57 1jl5_A Outer protein YOPM; leu 99.9 2.7E-25 9.3E-30 205.3 22.6 258 2-287 94-407 (454)
58 3o53_A Protein LRIM1, AGAP0063 99.9 4.8E-26 1.6E-30 201.0 13.1 251 5-289 16-275 (317)
59 2z62_A TOLL-like receptor 4, v 99.9 1.1E-24 3.7E-29 188.5 20.0 228 4-270 12-241 (276)
60 4g8a_A TOLL-like receptor 4; l 99.9 2.4E-24 8.1E-29 206.9 23.9 163 127-290 393-581 (635)
61 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-26 7.3E-31 203.2 8.0 235 1-272 36-282 (317)
62 3oja_A Leucine-rich immune mol 99.9 6.9E-25 2.4E-29 204.5 17.0 219 14-266 21-250 (487)
63 1jl5_A Outer protein YOPM; leu 99.9 4E-25 1.4E-29 204.2 15.0 220 1-266 13-250 (454)
64 3oja_A Leucine-rich immune mol 99.9 3.2E-25 1.1E-29 206.7 12.6 224 1-261 36-270 (487)
65 1z7x_W Ribonuclease inhibitor; 99.9 2.4E-26 8.1E-31 213.0 4.1 285 1-287 30-409 (461)
66 2z62_A TOLL-like receptor 4, v 99.9 3.6E-24 1.2E-28 185.2 17.1 207 1-231 30-241 (276)
67 1z7x_W Ribonuclease inhibitor; 99.9 1.7E-26 5.8E-31 214.0 0.8 287 1-287 5-381 (461)
68 2o6q_A Variable lymphocyte rec 99.9 3.5E-23 1.2E-27 178.4 21.0 203 26-269 18-221 (270)
69 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-23 1.1E-27 197.7 22.5 243 1-288 42-296 (622)
70 1wwl_A Monocyte differentiatio 99.9 1.8E-24 6.1E-29 190.5 12.4 223 2-267 66-310 (312)
71 2o6q_A Variable lymphocyte rec 99.9 7.9E-23 2.7E-27 176.2 21.7 203 2-230 19-221 (270)
72 3goz_A Leucine-rich repeat-con 99.9 7.1E-25 2.4E-29 197.0 8.4 219 3-235 2-246 (362)
73 1p9a_G Platelet glycoprotein I 99.9 8.3E-23 2.8E-27 177.8 19.1 196 2-227 13-208 (290)
74 1p9a_G Platelet glycoprotein I 99.9 1.4E-22 4.7E-27 176.5 20.2 203 22-268 8-210 (290)
75 3rfs_A Internalin B, repeat mo 99.9 5.8E-23 2E-27 177.3 16.5 222 5-277 25-247 (272)
76 3rfs_A Internalin B, repeat mo 99.9 8.1E-23 2.8E-27 176.3 16.4 223 24-295 19-241 (272)
77 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-22 1E-26 190.9 20.9 226 1-271 63-302 (622)
78 3goz_A Leucine-rich repeat-con 99.9 5.2E-24 1.8E-28 191.4 7.2 246 1-268 24-299 (362)
79 2ast_B S-phase kinase-associat 99.9 1.6E-23 5.3E-28 186.1 9.7 250 2-295 50-312 (336)
80 4glp_A Monocyte differentiatio 99.9 4.4E-23 1.5E-27 181.4 11.5 224 2-267 67-308 (310)
81 2xwt_C Thyrotropin receptor; s 99.9 1.9E-22 6.5E-27 170.6 13.3 193 10-232 22-223 (239)
82 2ca6_A RAN GTPase-activating p 99.9 2E-24 6.8E-29 195.8 0.9 244 14-287 23-314 (386)
83 2ca6_A RAN GTPase-activating p 99.9 4.9E-24 1.7E-28 193.2 2.8 256 1-286 34-340 (386)
84 2xwt_C Thyrotropin receptor; s 99.9 6E-22 2.1E-26 167.5 14.4 196 1-224 33-236 (239)
85 4glp_A Monocyte differentiatio 99.9 2E-22 6.9E-27 177.1 11.7 230 23-287 63-305 (310)
86 1h6u_A Internalin H; cell adhe 99.9 1.7E-21 5.8E-26 171.1 17.2 193 22-267 39-231 (308)
87 1h6u_A Internalin H; cell adhe 99.9 2.9E-21 9.8E-26 169.6 17.7 190 1-229 43-232 (308)
88 2ast_B S-phase kinase-associat 99.9 7.3E-23 2.5E-27 181.8 7.4 231 1-272 72-312 (336)
89 3m19_A Variable lymphocyte rec 99.9 5.7E-21 2E-25 162.7 18.8 180 25-229 15-194 (251)
90 3m19_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 157.6 17.9 181 48-268 14-194 (251)
91 2o6s_A Variable lymphocyte rec 99.8 1.5E-20 5.1E-25 155.5 14.1 175 4-235 12-186 (208)
92 4ay9_X Follicle-stimulating ho 99.8 2.8E-20 9.6E-25 166.2 16.2 235 2-263 12-256 (350)
93 3cvr_A Invasion plasmid antige 99.8 6.2E-20 2.1E-24 173.1 16.9 194 1-238 61-254 (571)
94 4ay9_X Follicle-stimulating ho 99.8 2.8E-19 9.6E-24 159.7 17.3 234 27-285 12-255 (350)
95 3ogk_B Coronatine-insensitive 99.8 9E-22 3.1E-26 187.8 -0.7 187 99-287 286-524 (592)
96 2o6s_A Variable lymphocyte rec 99.8 6.4E-19 2.2E-23 145.7 14.2 137 108-277 53-190 (208)
97 3ogk_B Coronatine-insensitive 99.8 5.8E-21 2E-25 182.2 0.8 79 1-80 166-251 (592)
98 1h6t_A Internalin B; cell adhe 99.8 8.1E-19 2.8E-23 152.7 14.1 172 22-229 44-215 (291)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-18 7.6E-23 143.7 15.2 152 3-169 15-167 (220)
100 3cvr_A Invasion plasmid antige 99.8 3.2E-18 1.1E-22 161.4 17.0 182 25-271 60-248 (571)
101 2v9t_B SLIT homolog 2 protein 99.8 3E-18 1E-22 142.9 14.8 150 3-168 15-165 (220)
102 1h6t_A Internalin B; cell adhe 99.8 2.8E-18 9.7E-23 149.2 14.9 168 1-205 48-215 (291)
103 2p1m_B Transport inhibitor res 99.8 1.8E-20 6.3E-25 178.7 -0.1 78 210-288 428-518 (594)
104 1m9s_A Internalin B; cell inva 99.8 2.9E-18 9.8E-23 163.2 14.5 173 22-230 41-213 (605)
105 2xot_A Amphoterin-induced prot 99.8 2.4E-18 8.1E-23 154.4 12.6 159 50-227 41-202 (361)
106 3e6j_A Variable lymphocyte rec 99.8 1.4E-17 4.8E-22 139.7 15.0 150 3-168 23-172 (229)
107 4ezg_A Putative uncharacterize 99.8 1.4E-17 4.7E-22 136.5 14.6 153 22-204 42-195 (197)
108 1m9s_A Internalin B; cell inva 99.8 1.7E-17 5.8E-22 157.9 16.6 170 1-207 45-214 (605)
109 4ezg_A Putative uncharacterize 99.8 7.5E-18 2.6E-22 138.0 12.2 153 45-227 41-194 (197)
110 2v9t_B SLIT homolog 2 protein 99.7 2.3E-17 7.9E-22 137.5 15.0 152 51-227 14-165 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 3.4E-17 1.2E-21 136.5 15.4 113 108-231 58-170 (220)
112 3e6j_A Variable lymphocyte rec 99.7 7E-17 2.4E-21 135.4 16.7 155 26-230 21-175 (229)
113 2p1m_B Transport inhibitor res 99.7 7.6E-20 2.6E-24 174.5 -1.7 83 1-83 107-195 (594)
114 2xot_A Amphoterin-induced prot 99.7 1.8E-17 6.1E-22 148.7 13.0 179 2-204 21-203 (361)
115 1dce_A Protein (RAB geranylger 99.7 2.5E-20 8.6E-25 176.3 -6.3 204 45-282 346-566 (567)
116 1xeu_A Internalin C; cellular 99.7 6.9E-18 2.4E-22 144.6 9.1 125 22-168 39-163 (263)
117 1xeu_A Internalin C; cellular 99.7 6.7E-18 2.3E-22 144.7 8.1 172 23-231 18-189 (263)
118 1dce_A Protein (RAB geranylger 99.7 8E-20 2.7E-24 172.8 -9.6 186 22-231 347-550 (567)
119 4b8c_D Glucose-repressible alc 99.7 1.2E-17 4.3E-22 162.4 4.1 118 41-173 217-334 (727)
120 4b8c_D Glucose-repressible alc 99.7 2.3E-17 7.8E-22 160.6 4.3 144 16-175 217-361 (727)
121 2ell_A Acidic leucine-rich nuc 99.7 1E-15 3.6E-20 121.8 12.3 137 22-172 22-163 (168)
122 2ell_A Acidic leucine-rich nuc 99.7 2.9E-16 1E-20 125.1 8.9 129 1-144 26-160 (168)
123 2je0_A Acidic leucine-rich nuc 99.6 5.9E-16 2E-20 120.7 8.6 130 22-164 15-149 (149)
124 1w8a_A SLIT protein; signaling 99.6 2.7E-15 9.4E-20 122.2 12.4 130 3-171 12-142 (192)
125 1w8a_A SLIT protein; signaling 99.6 4.4E-15 1.5E-19 121.0 12.3 131 51-207 11-143 (192)
126 2je0_A Acidic leucine-rich nuc 99.6 2.2E-15 7.4E-20 117.5 9.4 110 47-169 16-127 (149)
127 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.9E-19 118.6 12.8 127 28-169 14-140 (193)
128 2o6r_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 113.9 12.7 63 108-170 77-139 (177)
129 2wfh_A SLIT homolog 2 protein 99.6 4.9E-14 1.7E-18 114.8 13.1 125 3-143 14-138 (193)
130 2o6r_A Variable lymphocyte rec 99.5 8.6E-14 2.9E-18 111.7 13.2 112 108-230 29-140 (177)
131 3sb4_A Hypothetical leucine ri 99.5 4.1E-14 1.4E-18 125.0 11.7 231 1-260 51-328 (329)
132 3sb4_A Hypothetical leucine ri 99.5 2.4E-14 8.3E-19 126.6 9.4 254 23-304 24-324 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.5 3E-14 1E-18 114.3 9.0 129 22-168 17-153 (176)
134 1ds9_A Outer arm dynein; leuci 99.5 3E-16 1E-20 128.5 -3.9 164 22-204 16-186 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.5 5.8E-14 2E-18 112.6 9.6 138 43-204 14-154 (176)
136 4fdw_A Leucine rich hypothetic 99.5 4.7E-12 1.6E-16 114.7 19.4 236 15-301 127-369 (401)
137 1ds9_A Outer arm dynein; leuci 99.5 1.1E-15 3.9E-20 125.1 -4.4 156 44-228 14-186 (198)
138 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 103.4 10.0 103 27-144 12-115 (170)
139 2r9u_A Variable lymphocyte rec 99.4 2.6E-12 8.9E-17 102.7 10.2 103 27-144 15-118 (174)
140 3un9_A NLR family member X1; l 99.4 3.4E-14 1.2E-18 127.5 -1.4 171 47-235 71-260 (372)
141 3un9_A NLR family member X1; l 99.4 3.1E-14 1.1E-18 127.8 -2.4 174 71-268 71-254 (372)
142 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 98.5 12.0 109 108-230 10-118 (170)
143 4fdw_A Leucine rich hypothetic 99.3 4.2E-11 1.4E-15 108.4 17.1 242 1-286 137-380 (401)
144 2r9u_A Variable lymphocyte rec 99.3 3E-11 1E-15 96.5 12.0 107 109-229 14-120 (174)
145 4fs7_A Uncharacterized protein 99.2 4.9E-10 1.7E-14 101.3 17.3 277 15-303 62-368 (394)
146 2ifg_A High affinity nerve gro 99.2 8.1E-11 2.8E-15 104.5 9.4 103 3-120 12-116 (347)
147 2ifg_A High affinity nerve gro 99.1 8.1E-10 2.8E-14 98.0 11.0 61 108-168 32-93 (347)
148 2ra8_A Uncharacterized protein 99.0 2.3E-10 7.8E-15 101.9 6.7 179 68-267 135-321 (362)
149 4fs7_A Uncharacterized protein 99.0 9.1E-09 3.1E-13 92.9 16.9 253 1-286 73-376 (394)
150 2ra8_A Uncharacterized protein 99.0 1.5E-10 5.3E-15 103.0 3.7 170 44-235 135-328 (362)
151 4gt6_A Cell surface protein; l 98.9 1.3E-07 4.4E-12 85.3 19.2 247 22-286 61-367 (394)
152 4gt6_A Cell surface protein; l 98.9 9.4E-08 3.2E-12 86.3 17.7 263 15-286 78-388 (394)
153 1io0_A Tropomodulin; LRR prote 98.8 8.7E-10 3E-14 88.8 1.0 123 126-266 31-164 (185)
154 1io0_A Tropomodulin; LRR prote 98.5 2.1E-08 7.1E-13 80.7 2.2 96 42-144 30-136 (185)
155 4h09_A Hypothetical leucine ri 98.5 2.9E-05 9.8E-10 69.4 20.6 56 22-80 44-99 (379)
156 3e4g_A ATP synthase subunit S, 98.3 1.1E-07 3.8E-12 75.0 1.8 94 14-119 52-151 (176)
157 3rw6_A Nuclear RNA export fact 98.1 3E-06 1E-10 71.7 5.5 88 21-114 167-258 (267)
158 3rw6_A Nuclear RNA export fact 98.1 5.8E-06 2E-10 70.0 6.6 104 24-138 141-258 (267)
159 4h09_A Hypothetical leucine ri 98.0 0.00031 1E-08 62.6 17.6 119 127-263 213-343 (379)
160 3e4g_A ATP synthase subunit S, 98.0 1E-06 3.6E-11 69.4 1.1 91 131-228 61-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 2.9E-06 1E-10 68.2 1.2 120 128-265 38-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 5.8E-05 2E-09 60.6 2.3 121 148-286 34-167 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0024 8.3E-08 47.6 5.9 55 28-84 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0072 2.4E-07 45.0 6.5 37 191-227 32-68 (130)
165 2lz0_A Uncharacterized protein 64.7 7.2 0.00025 26.9 3.8 44 36-80 8-51 (100)
166 2lz0_A Uncharacterized protein 53.9 17 0.00059 24.9 4.2 49 8-58 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-36 Score=297.33 Aligned_cols=302 Identities=32% Similarity=0.492 Sum_probs=226.9
Q ss_pred CeEEEccCCCCcccCChhhhcC--CCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEe
Q 040487 1 MIVINLIQNQLSGHLPSTMGCT--LPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLS 78 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~--l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 78 (327)
|++|++++|.+.+.+|..+. . +++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+.++++|++|+
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLC-QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp CSEEECCSSEEEEECCTTTT-CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CcEEEccCCCcCCCcChhhh-hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 34555555555555554444 2 55666666666666666666666777777777777777666666677777777777
Q ss_pred CCCCccccc--------------cCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCccc
Q 040487 79 PVQNYLMTK--------------PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLI 144 (327)
Q Consensus 79 l~~n~l~~~--------------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 144 (327)
+++|.+++. ++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..++.+++|++|++++|.+.
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC-CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 776665532 5566666777777777777 8888888888888777877888888888888888887
Q ss_pred CCCchhccCCCCCCEEEccCCccccccCccccCccccchh----------------------------------------
Q 040487 145 GTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSL---------------------------------------- 184 (327)
Q Consensus 145 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l---------------------------------------- 184 (327)
+..|..+..+++|+.|++++|.+++.+|..+.....+..+
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 7778888888888888888888887777766543322211
Q ss_pred -------------------hccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhh---ccccccc
Q 040487 185 -------------------LLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQ---KLKQQSL 242 (327)
Q Consensus 185 -------------------~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~---~L~~l~l 242 (327)
.+..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..+. +|+.|++
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 123357899999999999999999999999999999999999999998765 5778889
Q ss_pred ccC------ccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCCCCCCCCCCCCCCCCCCCCCC
Q 040487 243 RKN------SQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNYALGSPPILQVPPYKEDNGEG 307 (327)
Q Consensus 243 ~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~l~~~p~~~~~~c~~~~~~~ 307 (327)
++| |..+..+++|+.||+++|+++|.+|....+.++....+.||+.++..| ++.|.......
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~---l~~C~~~~~~~ 755 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---LPRCDPSNADG 755 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT---SCCCCSCC---
T ss_pred CCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC---CcCCCCCccCC
Confidence 998 788999999999999999999999999889999999999999994434 24787654433
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8e-36 Score=293.15 Aligned_cols=81 Identities=30% Similarity=0.375 Sum_probs=49.2
Q ss_pred cCCcEEecCCCcCCCCCchhhh---cccccccccC------ccccCCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecc
Q 040487 214 EYILQIDLSSNSLSGSLLPHIQ---KLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSC 283 (327)
Q Consensus 214 ~~L~~L~ls~n~l~~~~~~~l~---~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l 283 (327)
++|+.|++++|.+++.+|..+. .|+.|++++| |..++.+++|+.||+++|+++|.+|.. ..+++|+.+++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 4455666666666665555443 3445556665 566666666777777777776666654 55666777777
Q ss_pred cCCCCCCCCCC
Q 040487 284 FGNYALGSPPI 294 (327)
Q Consensus 284 ~~n~~l~~~p~ 294 (327)
++|+..|.+|.
T Consensus 712 s~N~l~g~iP~ 722 (768)
T 3rgz_A 712 SNNNLSGPIPE 722 (768)
T ss_dssp CSSEEEEECCS
T ss_pred cCCcccccCCC
Confidence 77643266664
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.8e-34 Score=254.60 Aligned_cols=253 Identities=28% Similarity=0.407 Sum_probs=215.4
Q ss_pred CeEEEccCCCCcc--cCChhhhcCCCCCCEEEccc-CcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEE
Q 040487 1 MIVINLIQNQLSG--HLPSTMGCTLPNLERLTLSH-NKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWL 77 (327)
Q Consensus 1 L~~L~l~~~~~~~--~lp~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 77 (327)
+++|++++|.+.+ .+|..+. .+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+.++++|++|
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4678999999987 7888888 899999999995 88888888889999999999999999988888889999999999
Q ss_pred eCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCC-CCcEEEccCCcccCCCchhccCCCC
Q 040487 78 SPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLS-GLIVLNLFNNDLIGTIPKTVGGLQQ 156 (327)
Q Consensus 78 ~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~ 156 (327)
++++|.++ +.+|..+..++ +|++|++++|.+.+.+|..+..++ +|++|++++|.+.+..|..+..+.
T Consensus 131 ~Ls~N~l~----------~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 131 DFSYNALS----------GTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp ECCSSEEE----------SCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred eCCCCccC----------CcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 98888774 34777888887 899999999999888888888887 899999999999888888888776
Q ss_pred CCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhc
Q 040487 157 LQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQK 236 (327)
Q Consensus 157 L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 236 (327)
|+.|++++|.+++..|..+..+ ++|+.|++++|.+++..+. +..+++|+.|++++|.+++.+|..+.
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~- 265 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSD-----------KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT- 265 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTT-----------SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG-
T ss_pred ccEEECcCCcccCcCCHHHhcC-----------CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh-
Confidence 9999999999887777666554 4688999999999866555 67788999999999999877775444
Q ss_pred ccccccccCccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCCCCCCCC
Q 040487 237 LKQQSLRKNSQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNYALGSPP 293 (327)
Q Consensus 237 L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~l~~~p 293 (327)
.+++|+.|++++|++++.+|....+++|+.+++.+|+.+...|
T Consensus 266 --------------~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 266 --------------QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp --------------GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred --------------cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 6789999999999999999998889999999999998774333
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-33 Score=260.74 Aligned_cols=281 Identities=24% Similarity=0.267 Sum_probs=173.2
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCccccc-CCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGT-IPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 79 (327)
|++|++++|.+.+..|..+. .+++|++|++++|.+.+. .+..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp CCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred cCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 57899999999866677777 899999999999988744 3567889999999999999998878889999999999999
Q ss_pred CCCccccccCCCCCCcccCchh--hhhccccccEEEccCCcccccCCcc-ccCCCCCcEEEccCCcccCCCchhccC---
Q 040487 80 VQNYLMTKPLAANPLRGFLPSL--VSNFSASLQEFNAYGCELKGSIPQE-IGNLSGLIVLNLFNNDLIGTIPKTVGG--- 153 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~--- 153 (327)
++|.+++ ..+.. +..++ +|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..
T Consensus 111 ~~n~l~~----------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 111 TQCNLDG----------AVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp TTSCCBT----------HHHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred CCCCCCc----------cccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 8888754 12222 44555 6777777777776555544 566777777777777766554443332
Q ss_pred -------------------------------CCCCCEEEccCCccccccCccccCc---cccchhhc-------------
Q 040487 154 -------------------------------LQQLQGLDLFGNNLQGSIPYDLCNL---KRLYSLLL------------- 186 (327)
Q Consensus 154 -------------------------------~~~L~~L~l~~n~~~~~~~~~l~~~---~~L~~l~l------------- 186 (327)
+++|+.|++++|.+++..|..+... .+|+.+.+
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 3567777777777665444433221 22222222
Q ss_pred ------------------------------------cCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC
Q 040487 187 ------------------------------------QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL 230 (327)
Q Consensus 187 ------------------------------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 230 (327)
..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence 22344555555555555444445555555555555555554433
Q ss_pred chh---hhcccccccccC------ccccCCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCCCCCCCC
Q 040487 231 LPH---IQKLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNYALGSPP 293 (327)
Q Consensus 231 ~~~---l~~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~~l~~~p 293 (327)
+.. +++|+.|++++| +..+..+++|++|++++|++++..+.. ..+++|+.+++++|+..+..|
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 332 234444555554 344455555555555555555322221 345555555555554334443
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=254.50 Aligned_cols=277 Identities=22% Similarity=0.204 Sum_probs=232.8
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|++++|++.+..|..+. .+++|++|++++|.+++..|.+|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp CSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 57899999999865566666 89999999999999987778889999999999999999885555668889999999988
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.++. ..+..+..++ +|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 113 ~n~i~~----------~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 113 ENKIVI----------LLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp TSCCCE----------ECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCcccc----------CChhHccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 887744 3556677777 99999999999988778889999999999999999997777788999999999
Q ss_pred EccCCccccccCccccCccccchhhccCC-------------CCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCC
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQGL-------------VSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLS 227 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~~~-------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 227 (327)
++++|.+.+..+..+..++.|+.+.++++ .+|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 99999999777778899999998888543 37999999999999544467889999999999999988
Q ss_pred CCCch---hhhcccccccccC------ccccCCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCCCC
Q 040487 228 GSLLP---HIQKLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNYAL 289 (327)
Q Consensus 228 ~~~~~---~l~~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~~l 289 (327)
+..+. .+++|+.|++++| +..+..+++|+.|++++|++++..+.. ..+++|+.+++++|+..
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 75544 4567888889888 678889999999999999998644332 66889999999999743
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.5e-32 Score=249.66 Aligned_cols=261 Identities=20% Similarity=0.182 Sum_probs=194.9
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCccc--ccCCCCCcEEe
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNT--FGNLRFLNWLS 78 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~ 78 (327)
|++|++++|.+.+.++...+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+.. +..+++|++|+
T Consensus 56 L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 135 (455)
T 3v47_A 56 LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135 (455)
T ss_dssp CCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEE
T ss_pred ccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEE
Confidence 6789999998876665554448999999999999998777888999999999999999988655554 88899999999
Q ss_pred CCCCccccccCCCCCCcccCchh-hhhccccccEEEccCCcccccCCcccc-----------------------------
Q 040487 79 PVQNYLMTKPLAANPLRGFLPSL-VSNFSASLQEFNAYGCELKGSIPQEIG----------------------------- 128 (327)
Q Consensus 79 l~~n~l~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~----------------------------- 128 (327)
+++|.+++. .|.. +..++ +|++|++++|.+.+..+..+.
T Consensus 136 L~~n~l~~~----------~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 136 LRDNNIKKI----------QPASFFLNMR-RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp CCSSBCCSC----------CCCGGGGGCT-TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred CCCCccCcc----------CcccccCCCC-cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence 888887542 2332 34444 566666666655544333332
Q ss_pred -----CCCCCcEEEccCCcccCCCchhcc---------------------------------------CCCCCCEEEccC
Q 040487 129 -----NLSGLIVLNLFNNDLIGTIPKTVG---------------------------------------GLQQLQGLDLFG 164 (327)
Q Consensus 129 -----~l~~L~~L~l~~n~~~~~~~~~~~---------------------------------------~~~~L~~L~l~~ 164 (327)
.+++|++|++++|.+.+..+..+. ..++|+.|++++
T Consensus 205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred cccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence 235667777777766543332221 124677777777
Q ss_pred CccccccCccccCccccchhhc-------------cCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 165 NNLQGSIPYDLCNLKRLYSLLL-------------QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 165 n~~~~~~~~~l~~~~~L~~l~l-------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
|.+++..|..+..++.|+.|.+ ..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 7777666777777777777655 346789999999999998888889999999999999999988766
Q ss_pred hh---hhcccccccccC------ccccCCCCCCCeEeCcCCcceeeCCCC
Q 040487 232 PH---IQKLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPIK 272 (327)
Q Consensus 232 ~~---l~~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~ 272 (327)
.. +++|+.|++++| +..+..+++|++|++++|++++.+|..
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 54 467888899988 345789999999999999999887643
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=1.6e-32 Score=264.21 Aligned_cols=288 Identities=18% Similarity=0.148 Sum_probs=186.2
Q ss_pred CeEEEccCCCCccc-----------------CChhhh-cCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCcc-cc
Q 040487 1 MIVINLIQNQLSGH-----------------LPSTMG-CTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNY-FS 61 (327)
Q Consensus 1 L~~L~l~~~~~~~~-----------------lp~~~~-~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~ 61 (327)
|++|++++|.+++. +|..+. ..+++|++|++++|.+.+.+|..|+++++|++|++++|+ ++
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 57888888888864 777653 258888888888888888888888888888888888887 77
Q ss_pred c-cCcccccCC------CCCcEEeCCCCccccc---------------cCCCCCCcccCchhhhhccccccEEEccCCcc
Q 040487 62 G-LIPNTFGNL------RFLNWLSPVQNYLMTK---------------PLAANPLRGFLPSLVSNFSASLQEFNAYGCEL 119 (327)
Q Consensus 62 ~-~~~~~l~~l------~~L~~L~l~~n~l~~~---------------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 119 (327)
+ .+|..+..+ ++|++|++++|.++.. ++++|.+.+.+| .+..++ +|++|++++|.+
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l 365 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQI 365 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEE
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCcc
Confidence 6 677777665 8888888888776531 344455555566 555555 667777777666
Q ss_pred cccCCccccCCCC-CcEEEccCCcccCCCchhccCCC--CCCEEEccCCccccccCcccc-------Cccccchhhcc--
Q 040487 120 KGSIPQEIGNLSG-LIVLNLFNNDLIGTIPKTVGGLQ--QLQGLDLFGNNLQGSIPYDLC-------NLKRLYSLLLQ-- 187 (327)
Q Consensus 120 ~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~l~-------~~~~L~~l~l~-- 187 (327)
. .+|..+..+++ |++|++++|.++ .+|..+.... +|+.|++++|.+++..|..+. .+++|+.|.++
T Consensus 366 ~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 366 T-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp E-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred c-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 6 55666666666 777777777766 5555555433 677777777777666666665 45555555542
Q ss_pred -----------CCCCCCEEEcCCCcccccCCcc-ccCc-------cCCcEEecCCCcCCCCCch-----hhhcccccccc
Q 040487 188 -----------GLVSLRELYLDSNKLSSSIPSS-FWNL-------EYILQIDLSSNSLSGSLLP-----HIQKLKQQSLR 243 (327)
Q Consensus 188 -----------~~~~L~~L~l~~n~l~~~~~~~-l~~l-------~~L~~L~ls~n~l~~~~~~-----~l~~L~~l~l~ 243 (327)
.+++|++|++++|.++ .+|.. +... ++|+.|++++|.++. +|. .+++|+.|+++
T Consensus 444 ~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 444 QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECC
T ss_pred ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECC
Confidence 2456666666666666 33432 2222 266666666666663 333 23456666666
Q ss_pred cC-----ccccCCCCCCCeEeC------cCCcceeeCCCC-CCCCCcceecccCCCCCCCCCCC
Q 040487 244 KN-----SQVIGALPHLKQLNL------SYNRLEGEIPIK-GPFRNFSTQSCFGNYALGSPPIL 295 (327)
Q Consensus 244 ~~-----~~~l~~~~~L~~L~l------~~n~l~~~~~~~-~~~~~L~~l~l~~n~~l~~~p~~ 295 (327)
+| |..+..+++|+.|++ ++|++.+.+|.. ..+++|+.|++++|. ++.+|..
T Consensus 522 ~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~ 584 (636)
T 4eco_A 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK 584 (636)
T ss_dssp SSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC
T ss_pred CCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh
Confidence 65 455566666666666 345555555544 456667777777763 4666654
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=3.9e-31 Score=253.40 Aligned_cols=283 Identities=21% Similarity=0.238 Sum_probs=143.9
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|++++|.+++..|..+. .+++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp CCEEECTTCCCSEECTTTST-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CcEEEccCCccCcCChhHhc-cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 35666666666644444454 66666666666666665556666666666666666666655555555556666666655
Q ss_pred CCccccc--------------cCC------------------------CCCCcccCchhhhhcccccc--EEEccCCccc
Q 040487 81 QNYLMTK--------------PLA------------------------ANPLRGFLPSLVSNFSASLQ--EFNAYGCELK 120 (327)
Q Consensus 81 ~n~l~~~--------------~l~------------------------~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~ 120 (327)
+|.++.. +++ ++.+.+..+..+..+. +|+ .|++++|.+.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ-QATNLSLNLNGNDIA 192 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT-TCCSEEEECTTCCCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc-ccceeEEecCCCccC
Confidence 5554432 233 3333333333444443 444 3444444333
Q ss_pred ccCCccccCC---------------------------------------------------CCCcEEEccCCcccCCCch
Q 040487 121 GSIPQEIGNL---------------------------------------------------SGLIVLNLFNNDLIGTIPK 149 (327)
Q Consensus 121 ~~~~~~~~~l---------------------------------------------------~~L~~L~l~~n~~~~~~~~ 149 (327)
+..+..+... .+|+++++++|.+.+..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 2222111100 0223333333333333333
Q ss_pred hccCCCCCCEEEccCCccccccCccccCccccchhhc-------------cCCCCCCEEEcCCCcccccCCc-cccCccC
Q 040487 150 TVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLL-------------QGLVSLRELYLDSNKLSSSIPS-SFWNLEY 215 (327)
Q Consensus 150 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l-------------~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~ 215 (327)
.|..+++|+.|++++|.++ .+|..+..++.|+.+.+ ..+++|++|++++|.+.+.++. .+..+++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 3555566666666666665 55555555555555544 2245566666666655544333 3555566
Q ss_pred CcEEecCCCcCCCCC-----chhhhcccccccccC------ccccCCCCCCCeEeCcCCcceeeCCC--CCCCCCcceec
Q 040487 216 ILQIDLSSNSLSGSL-----LPHIQKLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPI--KGPFRNFSTQS 282 (327)
Q Consensus 216 L~~L~ls~n~l~~~~-----~~~l~~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~l~ 282 (327)
|+.|++++|.+++.. ...+++|+.|++++| +..+..+++|++|++++|++++..+. ...+++|+.++
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 666666666555432 223344555555555 34455555556666655555544332 23455555555
Q ss_pred ccCC
Q 040487 283 CFGN 286 (327)
Q Consensus 283 l~~n 286 (327)
+++|
T Consensus 432 l~~n 435 (606)
T 3t6q_A 432 LSHS 435 (606)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 5555
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=245.54 Aligned_cols=138 Identities=21% Similarity=0.261 Sum_probs=94.9
Q ss_pred cCCCCCCEEEccCCccccccCccccCccccchhhc---------------cCCCCCCEEEcCCCcccccCCc-cccCccC
Q 040487 152 GGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLL---------------QGLVSLRELYLDSNKLSSSIPS-SFWNLEY 215 (327)
Q Consensus 152 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l---------------~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~ 215 (327)
..+++|+.|++++|.+++..|..+..++.|+.+.+ ..+++|++|++++|.+++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 45567777777777777666777777776666654 3456777777777777764454 3666777
Q ss_pred CcEEecCCCcCCCCCchhh-hcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCC--CCCCCCcceecccCCC
Q 040487 216 ILQIDLSSNSLSGSLLPHI-QKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPI--KGPFRNFSTQSCFGNY 287 (327)
Q Consensus 216 L~~L~ls~n~l~~~~~~~l-~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~l~l~~n~ 287 (327)
|+.|++++|.+++..|..+ ++|+.|++++| |..+..+++|++|++++|++++ +|. ...+++|+.+++++|+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCC
Confidence 7777777777777666666 46777777776 5555577788888888887773 444 3557778888888886
Q ss_pred CCC
Q 040487 288 ALG 290 (327)
Q Consensus 288 ~l~ 290 (327)
..+
T Consensus 480 ~~c 482 (520)
T 2z7x_B 480 WDC 482 (520)
T ss_dssp BCC
T ss_pred Ccc
Confidence 433
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=7.6e-31 Score=251.42 Aligned_cols=278 Identities=21% Similarity=0.193 Sum_probs=202.3
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
.++.++.++. .+|..+. +.+++|++++|.+++..|..|..+++|++|++++|.+.+..|.+|.++++|++|++++|
T Consensus 16 ~~~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC---TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEECCCCCcc-cCcCCCC---CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 4677777777 7898775 57999999999999888889999999999999999999888999999999999999999
Q ss_pred ccccc--------------cCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCc
Q 040487 83 YLMTK--------------PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIP 148 (327)
Q Consensus 83 ~l~~~--------------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 148 (327)
.++.. +++++.+.+..+..+..++ +|++|++++|.+.+.....+..+++|++|++++|.+.+..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 87653 6677777776667788887 99999999999986444455669999999999999998778
Q ss_pred hhccCCCCCC--EEEccCCccccccCccccCcc-----------------------------------------------
Q 040487 149 KTVGGLQQLQ--GLDLFGNNLQGSIPYDLCNLK----------------------------------------------- 179 (327)
Q Consensus 149 ~~~~~~~~L~--~L~l~~n~~~~~~~~~l~~~~----------------------------------------------- 179 (327)
..+..+++|+ .|++++|.+++..|..+....
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 8889999999 889999988865554432210
Q ss_pred ----ccchhh-------------ccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCch---hhhcccc
Q 040487 180 ----RLYSLL-------------LQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLP---HIQKLKQ 239 (327)
Q Consensus 180 ----~L~~l~-------------l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~---~l~~L~~ 239 (327)
.|+.+. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..|. .+++|+.
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 122222 234567777777777777 6666777777777777777777654433 3344555
Q ss_pred cccccC-------ccccCCCCCCCeEeCcCCcceeeC--CC-CCCCCCcceecccCC
Q 040487 240 QSLRKN-------SQVIGALPHLKQLNLSYNRLEGEI--PI-KGPFRNFSTQSCFGN 286 (327)
Q Consensus 240 l~l~~~-------~~~l~~~~~L~~L~l~~n~l~~~~--~~-~~~~~~L~~l~l~~n 286 (327)
|++++| +..+..+++|++|++++|++++.. +. ...+++|+.+++++|
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence 555554 122445555555555555555432 21 234445555555555
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.5e-31 Score=254.88 Aligned_cols=279 Identities=23% Similarity=0.330 Sum_probs=237.3
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCc-ccc-cCCcccccC------CCCCEEEccCccccccCcc--cccC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNK-LSG-TIPNSIINA------SKLITLNLGYNYFSGLIPN--TFGN 70 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~ 70 (327)
|++|++++|.+.+.+|..+. .+++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .+.+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence 68999999999999998888 99999999999998 887 788888776 89999999999998 7888 8999
Q ss_pred CCCCcEEeCCCCccc-cc------------cCCCCCCcccCchhhhhcccc-ccEEEccCCcccccCCccccCCC--CCc
Q 040487 71 LRFLNWLSPVQNYLM-TK------------PLAANPLRGFLPSLVSNFSAS-LQEFNAYGCELKGSIPQEIGNLS--GLI 134 (327)
Q Consensus 71 l~~L~~L~l~~n~l~-~~------------~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~ 134 (327)
+++|++|++++|.++ .. ++++|.+. .+|..+..++ + |++|++++|.++ .+|..+..+. +|+
T Consensus 329 l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence 999999999999887 22 66777777 7888899888 7 999999999998 7787777655 899
Q ss_pred EEEccCCcccCCCchhcc-------CCCCCCEEEccCCccccccCcc-ccCccccchhhccC----------C-------
Q 040487 135 VLNLFNNDLIGTIPKTVG-------GLQQLQGLDLFGNNLQGSIPYD-LCNLKRLYSLLLQG----------L------- 189 (327)
Q Consensus 135 ~L~l~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~l~l~~----------~------- 189 (327)
+|++++|.+.+..|..+. .+++|+.|++++|.++ .+|.. +..++.|+.|.+++ +
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 999999999988888777 7789999999999999 66665 44578888887732 1
Q ss_pred ---CCCCEEEcCCCcccccCCcccc--CccCCcEEecCCCcCCCCCchh---hhccccccccc------C------cccc
Q 040487 190 ---VSLRELYLDSNKLSSSIPSSFW--NLEYILQIDLSSNSLSGSLLPH---IQKLKQQSLRK------N------SQVI 249 (327)
Q Consensus 190 ---~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~ls~n~l~~~~~~~---l~~L~~l~l~~------~------~~~l 249 (327)
++|+.|++++|.++ .+|..+. .+++|+.|++++|.+++ +|.. +++|+.|++++ | |..+
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 28999999999999 7888876 89999999999999998 5554 45678888843 3 6788
Q ss_pred CCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCCCC
Q 040487 250 GALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNYAL 289 (327)
Q Consensus 250 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~l 289 (327)
..+++|++|++++|++ +.+|.. ..++|+.+++++|+..
T Consensus 563 ~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTC
T ss_pred hcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCc
Confidence 8999999999999999 477765 3489999999999643
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.2e-30 Score=250.15 Aligned_cols=120 Identities=22% Similarity=0.200 Sum_probs=90.2
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|++++|++.+..+..+. .+++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp CCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred cCEEECCCCCcCEeChhhcc-CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 56788888888754444555 88888888888888887777778888888888888888886667788888888888888
Q ss_pred CCccccc--------------cCCCCCCcc-cCchhhhhccccccEEEccCCccccc
Q 040487 81 QNYLMTK--------------PLAANPLRG-FLPSLVSNFSASLQEFNAYGCELKGS 122 (327)
Q Consensus 81 ~n~l~~~--------------~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~ 122 (327)
+|.++.. +++++.+.+ .+|..++.++ +|++|++++|.+++.
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLSYNYIQTI 168 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-TCCEEECCSSCCCEE
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-CCCEEEccCCcceec
Confidence 8876543 455666654 4677777777 788888877766543
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=241.80 Aligned_cols=283 Identities=19% Similarity=0.206 Sum_probs=236.4
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
.++.++++++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 5677778887 7888764 68999999999999877889999999999999999999888899999999999999999
Q ss_pred ccccccCCCCCCcccCch-hhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEE
Q 040487 83 YLMTKPLAANPLRGFLPS-LVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 161 (327)
.++. +|. .+..++ +|++|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|+
T Consensus 91 ~l~~-----------~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 91 RLKL-----------IPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CCCS-----------CCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred cCCc-----------cCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 8865 443 356666 999999999999988888899999999999999999987888899999999999
Q ss_pred ccCCccccccCccccCccccchhhc-------------cCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCC
Q 040487 162 LFGNNLQGSIPYDLCNLKRLYSLLL-------------QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSG 228 (327)
Q Consensus 162 l~~n~~~~~~~~~l~~~~~L~~l~l-------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 228 (327)
+++|.+++..+..+..++.|+.+.+ ..+++|++|++++|...+.++.......+|+.|++++|.+++
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 9999998555556888888887765 346789999999988776777666666799999999999986
Q ss_pred CCch---hhhcccccccccC------ccccCCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCCCCCCCCCCCCC
Q 040487 229 SLLP---HIQKLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNYALGSPPILQVP 298 (327)
Q Consensus 229 ~~~~---~l~~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~~l~~~p~~~~~ 298 (327)
..+. .+++|+.|++++| +..+..+++|++|++++|++++..|.. ..+++|+.+++++| .+..+|...+.
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 317 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFH 317 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBS
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcC
Confidence 5533 4567888899988 456889999999999999999876654 67899999999999 57666654344
Q ss_pred CCCC
Q 040487 299 PYKE 302 (327)
Q Consensus 299 ~c~~ 302 (327)
.|..
T Consensus 318 ~l~~ 321 (477)
T 2id5_A 318 SVGN 321 (477)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 4444
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=9.4e-30 Score=247.01 Aligned_cols=285 Identities=25% Similarity=0.229 Sum_probs=179.9
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
++|++++|.+. .+|...+..+++|++|++++|.+++..+..|+++++|++|++++|.+++..+..+.++++|++|++++
T Consensus 76 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 76 KVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred CEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 44555555544 33332222455555555555555443334455555555555555555544444455555555555555
Q ss_pred Cccccc----------------cCCCCCCcccCchhhhhcc--------------------------ccccEEEccCCcc
Q 040487 82 NYLMTK----------------PLAANPLRGFLPSLVSNFS--------------------------ASLQEFNAYGCEL 119 (327)
Q Consensus 82 n~l~~~----------------~l~~~~~~~~~~~~~~~~~--------------------------~~L~~L~l~~~~~ 119 (327)
|.+++. +++++.+.+..|..+..+. ++|+.|++++|.+
T Consensus 155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp SCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred CcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 543321 3344444444443333221 1455555555555
Q ss_pred cccCCccccCCC--CCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhc-----------
Q 040487 120 KGSIPQEIGNLS--GLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLL----------- 186 (327)
Q Consensus 120 ~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l----------- 186 (327)
.+..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+.+.+
T Consensus 235 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp CEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred cccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 555555565554 4899999999888777778888999999999999998778888888887777655
Q ss_pred -----------cCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC-----chhh--hcccccccccC---
Q 040487 187 -----------QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL-----LPHI--QKLKQQSLRKN--- 245 (327)
Q Consensus 187 -----------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-----~~~l--~~L~~l~l~~~--- 245 (327)
..+++|++|++++|.+++..+..+..+++|+.|++++|.++... +..+ +.|+.+++++|
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence 34678999999999999888888888999999999888654321 1111 35667777766
Q ss_pred ---ccccCCCCCCCeEeCcCCcceeeCCCC--CCCCCcceecccCCC
Q 040487 246 ---SQVIGALPHLKQLNLSYNRLEGEIPIK--GPFRNFSTQSCFGNY 287 (327)
Q Consensus 246 ---~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~L~~l~l~~n~ 287 (327)
+..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|.
T Consensus 395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 456667777777777777777655532 456666777776663
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.9e-31 Score=260.97 Aligned_cols=267 Identities=18% Similarity=0.217 Sum_probs=173.0
Q ss_pred CeEEEccCCCCcc-----------------cCChhh-hcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCcc-cc
Q 040487 1 MIVINLIQNQLSG-----------------HLPSTM-GCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNY-FS 61 (327)
Q Consensus 1 L~~L~l~~~~~~~-----------------~lp~~~-~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~ 61 (327)
|++|+|++|.+++ .+|..+ +..+++|++|++++|.+.+.+|..|.++++|++|++++|+ ++
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 6789999999987 388776 3478999999999999888899999999999999999998 87
Q ss_pred c-cCcccccCCC-------CCcEEeCCCCccccccCCCCCCcccCch--hhhhccccccEEEccCCcccccCCccccCCC
Q 040487 62 G-LIPNTFGNLR-------FLNWLSPVQNYLMTKPLAANPLRGFLPS--LVSNFSASLQEFNAYGCELKGSIPQEIGNLS 131 (327)
Q Consensus 62 ~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 131 (327)
+ .+|..+.+++ +|++|++++|.++. +|. .+..++ +|+.|++++|.+. .+| .+..++
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-----------ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-----------FPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-----------CCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTS
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCCc-----------cCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCC
Confidence 7 6777666554 99999988888754 666 666666 7777777777776 556 667777
Q ss_pred CCcEEEccCCcccCCCchhccCCCC-CCEEEccCCccccccCccccCccc--cchhhccC------------------CC
Q 040487 132 GLIVLNLFNNDLIGTIPKTVGGLQQ-LQGLDLFGNNLQGSIPYDLCNLKR--LYSLLLQG------------------LV 190 (327)
Q Consensus 132 ~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~~~--L~~l~l~~------------------~~ 190 (327)
+|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+. |+.+.++. ++
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 7777777777776 56666666776 777777777776 66655554432 44444421 12
Q ss_pred CCCEEEcCCCcccccCCccc-cCccCCcEEecCCCcCCCCCchhh----------hcccccccccC-----ccccC--CC
Q 040487 191 SLRELYLDSNKLSSSIPSSF-WNLEYILQIDLSSNSLSGSLLPHI----------QKLKQQSLRKN-----SQVIG--AL 252 (327)
Q Consensus 191 ~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~l----------~~L~~l~l~~~-----~~~l~--~~ 252 (327)
+|+.|++++|.++ .+|..+ ..+++|+.|++++|.++......+ ++|+.|++++| |..+. .+
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l 752 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC
Confidence 4555666666555 334332 345555555555555552111111 14555555554 34443 55
Q ss_pred CCCCeEeCcCCcceeeCCCC-CCCCCcceecccC
Q 040487 253 PHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFG 285 (327)
Q Consensus 253 ~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~ 285 (327)
++|+.|++++|++++ +|.. ..+++|+.|++++
T Consensus 753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 555555555555554 3322 4445555555544
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.9e-30 Score=246.59 Aligned_cols=138 Identities=27% Similarity=0.284 Sum_probs=105.7
Q ss_pred cCCCCCCEEEccCCccccccCccccCccccchhhc---------------cCCCCCCEEEcCCCcccccCCc-cccCccC
Q 040487 152 GGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLL---------------QGLVSLRELYLDSNKLSSSIPS-SFWNLEY 215 (327)
Q Consensus 152 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l---------------~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~ 215 (327)
..+++|+.|++++|.+++..|..+..+++|+.+.+ ..+++|+.|++++|.+++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 45667777777777777667777777777776654 3456788888888888874554 4677888
Q ss_pred CcEEecCCCcCCCCCchhh-hcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCC--CCCCCCcceecccCCC
Q 040487 216 ILQIDLSSNSLSGSLLPHI-QKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPI--KGPFRNFSTQSCFGNY 287 (327)
Q Consensus 216 L~~L~ls~n~l~~~~~~~l-~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~l~l~~n~ 287 (327)
|+.|++++|.+++..|..+ ++|+.|++++| |..+..+++|+.|++++|++++ +|. ...+++|+.+++++|+
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCC
Confidence 8999999998888777777 58888888887 5666688899999999999884 554 3678889999999997
Q ss_pred CCC
Q 040487 288 ALG 290 (327)
Q Consensus 288 ~l~ 290 (327)
..+
T Consensus 509 ~~c 511 (562)
T 3a79_B 509 WDC 511 (562)
T ss_dssp BCC
T ss_pred cCC
Confidence 544
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1e-30 Score=247.60 Aligned_cols=284 Identities=23% Similarity=0.220 Sum_probs=174.6
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|++.+..|..+. .+++|++|++++|.+++..+.+|..+++|++|++++|.+++..+..++++++|++|+++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp CCEEECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred ccEEECcCCccCccChhhhh-cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 57788888888755566665 88888888888888887777778888888888888888886666668888888888888
Q ss_pred CCccccc---------------cCCCCCCcccCc-hhhhhccccccEEEccCCcccccCCccccC---------------
Q 040487 81 QNYLMTK---------------PLAANPLRGFLP-SLVSNFSASLQEFNAYGCELKGSIPQEIGN--------------- 129 (327)
Q Consensus 81 ~n~l~~~---------------~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------------- 129 (327)
+|.++.. +++++...+.+| ..+..++ +|++|++++|.+.+..|..+..
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-ccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 8877642 222333222232 3455554 6666666666555444444333
Q ss_pred ---------CCCCcEEEccCCcccCC------------------------------------------------------
Q 040487 130 ---------LSGLIVLNLFNNDLIGT------------------------------------------------------ 146 (327)
Q Consensus 130 ---------l~~L~~L~l~~n~~~~~------------------------------------------------------ 146 (327)
+++|++|++++|.+.+.
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 23344444444433321
Q ss_pred -----------------------------------------------------------Cchhc-cCCCCCCEEEccCCc
Q 040487 147 -----------------------------------------------------------IPKTV-GGLQQLQGLDLFGNN 166 (327)
Q Consensus 147 -----------------------------------------------------------~~~~~-~~~~~L~~L~l~~n~ 166 (327)
+|..+ ..+++|+.|++++|.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 11111 235566666666666
Q ss_pred cccccCc---cccCccccchhhc---------------cCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCC
Q 040487 167 LQGSIPY---DLCNLKRLYSLLL---------------QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSG 228 (327)
Q Consensus 167 ~~~~~~~---~l~~~~~L~~l~l---------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 228 (327)
+++..|. .+..++.|+.|.+ ..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC
T ss_pred cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc
Confidence 6544322 2444555555443 33556777777777776 566666666777777777776654
Q ss_pred CCchhhhcccccccccC--ccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCCCC
Q 040487 229 SLLPHIQKLKQQSLRKN--SQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNYAL 289 (327)
Q Consensus 229 ~~~~~l~~L~~l~l~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~l 289 (327)
......++|+.|++++| ......+++|++|++++|+++ .+|....+++|+.+++++| .+
T Consensus 425 l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N-~l 485 (549)
T 2z81_A 425 VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRN-QL 485 (549)
T ss_dssp CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSS-CC
T ss_pred ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCC-cc
Confidence 32222345666666666 233346777777777777776 5665556777777777777 35
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.5e-30 Score=234.96 Aligned_cols=267 Identities=20% Similarity=0.200 Sum_probs=190.7
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|+++++.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 47 l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 47 QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 578999999987 6888766689999999999999997777789999999999999999997777889999999999999
Q ss_pred CCccccccCCCCCCcccCchh-hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCE
Q 040487 81 QNYLMTKPLAANPLRGFLPSL-VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQG 159 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 159 (327)
+|.++. +|.. +..++ +|++|++++|.+....+..+..+++|++|++++|.+++.. +..+++|+.
T Consensus 126 ~n~l~~-----------l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~ 190 (390)
T 3o6n_A 126 RNDLSS-----------LPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 190 (390)
T ss_dssp SSCCCC-----------CCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSE
T ss_pred CCccCc-----------CCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccce
Confidence 998765 5544 45566 8999999999988777777888999999999999887542 334455555
Q ss_pred EEccCCcccc------------------ccCccccCccccchhhc-----------cCCCCCCEEEcCCCcccccCCccc
Q 040487 160 LDLFGNNLQG------------------SIPYDLCNLKRLYSLLL-----------QGLVSLRELYLDSNKLSSSIPSSF 210 (327)
Q Consensus 160 L~l~~n~~~~------------------~~~~~l~~~~~L~~l~l-----------~~~~~L~~L~l~~n~l~~~~~~~l 210 (327)
+++++|.+++ .++... .++|+.+.+ ..+++|++|++++|.+++..|..+
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHc
Confidence 5555554432 111111 123333333 335667777777777776666667
Q ss_pred cCccCCcEEecCCCcCCCCCc--hhhhcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecc
Q 040487 211 WNLEYILQIDLSSNSLSGSLL--PHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSC 283 (327)
Q Consensus 211 ~~l~~L~~L~ls~n~l~~~~~--~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l 283 (327)
..+++|+.|++++|.+++... ..+++|+.|++++| +..+..+++|+.|++++|++++ ++ ...+++|+.+++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l 346 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTL 346 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEEC
T ss_pred cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce-eC-chhhccCCEEEc
Confidence 777777777777777665321 23556677777666 4445566777777777777763 33 345667777777
Q ss_pred cCCC
Q 040487 284 FGNY 287 (327)
Q Consensus 284 ~~n~ 287 (327)
++|+
T Consensus 347 ~~N~ 350 (390)
T 3o6n_A 347 SHND 350 (390)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7775
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5e-30 Score=243.87 Aligned_cols=119 Identities=24% Similarity=0.253 Sum_probs=87.9
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|++++|.+.+..+..+. .+++|++|++++|.+++..+.+|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp CCEEECCSCCCCEECTTTTT-TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEEccCCccCccChhHhh-CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 46788888888754455555 88888888888888887667778888888888888888876666778888888888888
Q ss_pred CCccccc--------------cCCCCCCcc-cCchhhhhccccccEEEccCCcccc
Q 040487 81 QNYLMTK--------------PLAANPLRG-FLPSLVSNFSASLQEFNAYGCELKG 121 (327)
Q Consensus 81 ~n~l~~~--------------~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~ 121 (327)
+|.++.. +++++.+.+ .+|..+..++ +|++|++++|.+..
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQS 163 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECTTSCCCE
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccC-CCCEEeCcCCccce
Confidence 8766543 455555555 3577777776 77777777776543
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=4.4e-30 Score=246.08 Aligned_cols=85 Identities=26% Similarity=0.330 Sum_probs=44.7
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccc-cCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSG-LIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l 79 (327)
|++|++++|.+.+..|..+. .+++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..+.++++|++|++
T Consensus 82 L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 82 LSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp CCEEECTTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred cCEeECCCCcccccChhhcC-CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 34455555554433344443 45555555555555543333445555555555555555543 34566666666666666
Q ss_pred CCCcccc
Q 040487 80 VQNYLMT 86 (327)
Q Consensus 80 ~~n~l~~ 86 (327)
++|.+++
T Consensus 161 s~n~l~~ 167 (606)
T 3vq2_A 161 SYNYIQT 167 (606)
T ss_dssp CSSCCCE
T ss_pred cCCccee
Confidence 6665543
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.1e-29 Score=222.63 Aligned_cols=262 Identities=24% Similarity=0.259 Sum_probs=212.0
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++++++++.+. .+|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 467889999887 7887664 789999999999997767789999999999999999997778899999999999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccC--CCchhccCCCCCC
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIG--TIPKTVGGLQQLQ 158 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~ 158 (327)
+|.++. +|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|+
T Consensus 109 ~n~l~~-----------l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 109 KNQLKE-----------LPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp SSCCSB-----------CCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCcCCc-----------cChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 998865 333332 389999999999987666678889999999999998863 5667788899999
Q ss_pred EEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCch---hhh
Q 040487 159 GLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLP---HIQ 235 (327)
Q Consensus 159 ~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~---~l~ 235 (327)
.|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+. .++
T Consensus 175 ~L~l~~n~l~-~l~~~~~-------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 175 YIRIADTNIT-TIPQGLP-------------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp EEECCSSCCC-SCCSSCC-------------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred EEECCCCccc-cCCcccc-------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 9999999987 5555432 3689999999999877788888999999999999998876543 345
Q ss_pred cccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCCC-------CCCCCcceecccCCCCC-CCCCC
Q 040487 236 KLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIK-------GPFRNFSTQSCFGNYAL-GSPPI 294 (327)
Q Consensus 236 ~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~-------~~~~~L~~l~l~~n~~l-~~~p~ 294 (327)
+|+.|++++| |..+..+++|++|++++|++++..+.. ...+.++.+++.+||.. ..++.
T Consensus 241 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence 6788888887 677888999999999999998543322 12467889999999754 33443
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4.3e-30 Score=226.54 Aligned_cols=227 Identities=26% Similarity=0.405 Sum_probs=202.7
Q ss_pred CeEEEccC-CCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQ-NQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~-~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 79 (327)
|++|++++ |.+.+.+|..+. .+++|++|++++|.+++.+|..|..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 68899995 999989999998 9999999999999999889999999999999999999999889999999999999998
Q ss_pred CCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCE
Q 040487 80 VQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQG 159 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 159 (327)
++|.++ +.+|..+..++.+|++|++++|.+.+..|..+..+. |++|++++|.+.+..+..+..+++|+.
T Consensus 157 ~~N~l~----------~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 157 DGNRIS----------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp CSSCCE----------EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred cCCccc----------CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 888764 458888888866899999999999988898998887 999999999999889999999999999
Q ss_pred EEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccc
Q 040487 160 LDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQ 239 (327)
Q Consensus 160 L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~ 239 (327)
|++++|.+++..+. +.. +++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..
T Consensus 226 L~L~~N~l~~~~~~-~~~-----------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~------ 287 (313)
T 1ogq_A 226 IHLAKNSLAFDLGK-VGL-----------SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG------ 287 (313)
T ss_dssp EECCSSEECCBGGG-CCC-----------CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS------
T ss_pred EECCCCceeeecCc-ccc-----------cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC------
Confidence 99999999855543 333 457999999999999999999999999999999999999877642
Q ss_pred cccccCccccCCCCCCCeEeCcCCc-cee
Q 040487 240 QSLRKNSQVIGALPHLKQLNLSYNR-LEG 267 (327)
Q Consensus 240 l~l~~~~~~l~~~~~L~~L~l~~n~-l~~ 267 (327)
..+++|+.+++++|+ +.|
T Consensus 288 ----------~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 ----------GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ----------TTGGGSCGGGTCSSSEEES
T ss_pred ----------ccccccChHHhcCCCCccC
Confidence 356789999999998 443
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.6e-29 Score=224.67 Aligned_cols=270 Identities=21% Similarity=0.210 Sum_probs=210.0
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++++++++.+. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..|.++.++++|++|+++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 467888888887 7887664 689999999999887767788899999999999999987778889999999999998
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccC--CCchhccCCCCCC
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIG--TIPKTVGGLQQLQ 158 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~ 158 (327)
+|.++. +|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+
T Consensus 111 ~n~l~~-----------l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 111 KNHLVE-----------IPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp SSCCCS-----------CCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred CCcCCc-----------cCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 888765 343333 289999999998886666668889999999999998853 556666666 899
Q ss_pred EEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchh---hh
Q 040487 159 GLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPH---IQ 235 (327)
Q Consensus 159 ~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~---l~ 235 (327)
.|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.. ++
T Consensus 176 ~L~l~~n~l~-~l~~~~~-------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 176 YLRISEAKLT-GIPKDLP-------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp CCBCCSSBCS-SCCSSSC-------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred EEECcCCCCC-ccCcccc-------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 9999999887 4555443 36889999999998777788888999999999999988766543 45
Q ss_pred cccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCCC-------CCCCCcceecccCCCCC-CCCCCCCCCCCCC
Q 040487 236 KLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIK-------GPFRNFSTQSCFGNYAL-GSPPILQVPPYKE 302 (327)
Q Consensus 236 ~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~-------~~~~~L~~l~l~~n~~l-~~~p~~~~~~c~~ 302 (327)
+|+.|++++| |..+..+++|+.|++++|++++..+.. ...+.++.+++.+|+.. ..++...+..|..
T Consensus 242 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~ 321 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321 (332)
T ss_dssp TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccch
Confidence 6778888887 677888999999999999998543322 11466899999999854 3454443444444
Q ss_pred C
Q 040487 303 D 303 (327)
Q Consensus 303 ~ 303 (327)
.
T Consensus 322 L 322 (332)
T 2ft3_A 322 R 322 (332)
T ss_dssp S
T ss_pred h
Confidence 3
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.1e-29 Score=237.56 Aligned_cols=64 Identities=25% Similarity=0.298 Sum_probs=35.3
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccc-cCcccccCCCCCcEEeCCCCccc
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSG-LIPNTFGNLRFLNWLSPVQNYLM 85 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~ 85 (327)
.+++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.++
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 44444444444444442222235555566666666666554 24666667777777777766554
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.8e-29 Score=242.06 Aligned_cols=274 Identities=23% Similarity=0.212 Sum_probs=193.3
Q ss_pred CeEEEccCCCCcccCCh-hhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQNQLSGHLPS-TMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 79 (327)
+++|++++|.+.+ +|. .+. .+++|++|++++|.+++..|.+|.++++|++|++++|.+++..+.+|.++++|++|++
T Consensus 27 l~~L~Ls~n~l~~-~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 27 ITVLNLTHNQLRR-LPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp CSEEECCSSCCCC-CCGGGGG-GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CcEEECCCCCCCC-cCHHHHh-CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 5789999999884 554 455 8899999999999998877888889999999999999988544457889999999998
Q ss_pred CCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhcc--CCCCC
Q 040487 80 VQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVG--GLQQL 157 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L 157 (327)
++|.+++ ..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+. ..++|
T Consensus 105 ~~n~l~~----------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 105 MSNSIQK----------IKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp CSSCCCC----------CCSCTTTTCT-TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred CCCccCc----------cChhHccccC-CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 8887754 2345677777 999999999999887788888999999999999999876666554 56899
Q ss_pred CEEEccCCccccccCccccCccccchhhccC----------------CCC--------------------------CCEE
Q 040487 158 QGLDLFGNNLQGSIPYDLCNLKRLYSLLLQG----------------LVS--------------------------LREL 195 (327)
Q Consensus 158 ~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~----------------~~~--------------------------L~~L 195 (327)
+.|++++|.+++..|..+..+..|+.+.+.. .++ |+.|
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 9999999999877777777666665543321 123 5555
Q ss_pred EcCCCcccccCCccccCccCCcEEecCCCcCCCCCchh---hhcccccccccC-----------c----cccCCCCCCCe
Q 040487 196 YLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPH---IQKLKQQSLRKN-----------S----QVIGALPHLKQ 257 (327)
Q Consensus 196 ~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~---l~~L~~l~l~~~-----------~----~~l~~~~~L~~ 257 (327)
++++|.+++..+..+..+++|+.|++++|.+++..+.. +++|+.++++++ | ..+..+++|++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 55555555444555555555555555555555443332 233444445432 1 14455666666
Q ss_pred EeCcCCcceeeCCCC-CCCCCcceecccCCC
Q 040487 258 LNLSYNRLEGEIPIK-GPFRNFSTQSCFGNY 287 (327)
Q Consensus 258 L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~ 287 (327)
|++++|++++..+.. ..+++|+.+++++|.
T Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp EECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred EECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 666666666544332 456666666666663
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=251.32 Aligned_cols=275 Identities=20% Similarity=0.154 Sum_probs=192.1
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccC-CcccccCCCCCEEEccCccccccCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTI-PNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 79 (327)
+++|+|++|.+.+..|..+. .+++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|..|.++++|++|++
T Consensus 26 l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp CCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred cCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 57899999999866677776 8999999999998554344 778889999999999999998888888999999999998
Q ss_pred CCCccccccCCCCCCcccCchh--hhhccccccEEEccCCcccccCC-ccccCCCCCcEEEccCCcccCCCchhccCC--
Q 040487 80 VQNYLMTKPLAANPLRGFLPSL--VSNFSASLQEFNAYGCELKGSIP-QEIGNLSGLIVLNLFNNDLIGTIPKTVGGL-- 154 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-- 154 (327)
++|.+++ .++.. +..++ +|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..+
T Consensus 105 s~n~l~~----------~~~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 105 YFCGLSD----------AVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp TTCCCSS----------CCSTTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCCCCc----------ccccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 8887754 12222 45555 77777777777765433 456777777777777777765555554443
Q ss_pred CCCCEEEccCCccccccCccccCccc------cchhhccC----------------------------------------
Q 040487 155 QQLQGLDLFGNNLQGSIPYDLCNLKR------LYSLLLQG---------------------------------------- 188 (327)
Q Consensus 155 ~~L~~L~l~~n~~~~~~~~~l~~~~~------L~~l~l~~---------------------------------------- 188 (327)
++|+.|++++|.+.+..+..+..+.. |+.+.+++
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 45555555555554444433333222 33332211
Q ss_pred -----------CCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchh---hhcccccccccC------ccc
Q 040487 189 -----------LVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPH---IQKLKQQSLRKN------SQV 248 (327)
Q Consensus 189 -----------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~---l~~L~~l~l~~~------~~~ 248 (327)
.++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+.. +++|+.|++++| +..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 256888888888888777777888888888888888887665543 456777777777 567
Q ss_pred cCCCCCCCeEeCcCCcceeeCCC-CCCCCCcceecccCCC
Q 040487 249 IGALPHLKQLNLSYNRLEGEIPI-KGPFRNFSTQSCFGNY 287 (327)
Q Consensus 249 l~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~ 287 (327)
+..+++|+.|++++|++.+..+. ...+++|+.|++++|.
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 77888888888888888754433 2557778888888773
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.8e-29 Score=238.56 Aligned_cols=276 Identities=19% Similarity=0.180 Sum_probs=158.4
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
+++++++|+++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++
T Consensus 34 ~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 35667777666 4665543 6677777777777655556666777777777777777665566677777777777776
Q ss_pred Cccccc-----------cCCCCCCcc-cCchhhhhccccccEEEccCCcccccCCccccCCCCC--cEEEccCCcc--cC
Q 040487 82 NYLMTK-----------PLAANPLRG-FLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGL--IVLNLFNNDL--IG 145 (327)
Q Consensus 82 n~l~~~-----------~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~ 145 (327)
|.++.. ++++|.+.+ .+|..++.++ +|++|++++|.+... .+..+++| ++|++++|.+ .+
T Consensus 110 N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 110 NRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp SCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred CcCCccCccccccCCEEECCCCCccccCchHhhcccC-cccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence 665542 233344333 2345666666 677777777666532 23333444 6666666655 33
Q ss_pred CCchhccCC-----------------------------------------------------------------------
Q 040487 146 TIPKTVGGL----------------------------------------------------------------------- 154 (327)
Q Consensus 146 ~~~~~~~~~----------------------------------------------------------------------- 154 (327)
..+..+..+
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 333332221
Q ss_pred ----------CCCCEEEccCCccccccCccc-----cCccccch--------------------------hhc-------
Q 040487 155 ----------QQLQGLDLFGNNLQGSIPYDL-----CNLKRLYS--------------------------LLL------- 186 (327)
Q Consensus 155 ----------~~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~--------------------------l~l------- 186 (327)
++|+.|++++|.+++.+|..+ ..+..|+. +.+
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc
Confidence 156666777777766666655 22222221 111
Q ss_pred ----cCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC--c---hhhhcccccccccC------c-cccC
Q 040487 187 ----QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL--L---PHIQKLKQQSLRKN------S-QVIG 250 (327)
Q Consensus 187 ----~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~--~---~~l~~L~~l~l~~~------~-~~l~ 250 (327)
..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.. | ..+++|+.|++++| | ..+.
T Consensus 346 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred ccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 34567777788877777767777777777777777777776522 2 23455666666666 1 1244
Q ss_pred CCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCC
Q 040487 251 ALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGN 286 (327)
Q Consensus 251 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n 286 (327)
.+++|++|++++|++++.+|.... ++|+.+++++|
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N 460 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNN 460 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSS
T ss_pred CcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCC
Confidence 455555555555555443332210 34444444444
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.4e-29 Score=242.10 Aligned_cols=268 Identities=20% Similarity=0.188 Sum_probs=200.8
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus 53 l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 53 QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 467889999887 6777766589999999999999997777789999999999999999997777788999999999999
Q ss_pred CCccccccCCCCCCcccCchh-hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCE
Q 040487 81 QNYLMTKPLAANPLRGFLPSL-VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQG 159 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 159 (327)
+|.++. +|.. +..++ +|++|++++|.+.+..+..+..+++|++|++++|.+.+.. +..+++|+.
T Consensus 132 ~n~l~~-----------l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~ 196 (597)
T 3oja_B 132 RNDLSS-----------LPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 196 (597)
T ss_dssp SSCCCC-----------CCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSE
T ss_pred CCCCCC-----------CCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhh
Confidence 888765 4444 45666 8999999999888777778888899999999998887543 233444555
Q ss_pred EEccCCcccc------------------ccCccccCccccchhhc-----------cCCCCCCEEEcCCCcccccCCccc
Q 040487 160 LDLFGNNLQG------------------SIPYDLCNLKRLYSLLL-----------QGLVSLRELYLDSNKLSSSIPSSF 210 (327)
Q Consensus 160 L~l~~n~~~~------------------~~~~~l~~~~~L~~l~l-----------~~~~~L~~L~l~~n~l~~~~~~~l 210 (327)
|++++|.+++ .++..+ .+.|+.|.+ ..+++|+.|++++|.+++..|..+
T Consensus 197 L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp EECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred hhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 5444444432 111111 123444433 446778888888888887778888
Q ss_pred cCccCCcEEecCCCcCCCCCc--hhhhcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecc
Q 040487 211 WNLEYILQIDLSSNSLSGSLL--PHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSC 283 (327)
Q Consensus 211 ~~l~~L~~L~ls~n~l~~~~~--~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l 283 (327)
..+++|+.|++++|.+++..+ ..+++|+.|++++| |..+..+++|+.|++++|++++. + ...+++|+.+++
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l 352 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTL 352 (597)
T ss_dssp TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEEC
T ss_pred cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEe
Confidence 888888888888888876322 23567888888887 55667788888888888888743 3 346788888999
Q ss_pred cCCCC
Q 040487 284 FGNYA 288 (327)
Q Consensus 284 ~~n~~ 288 (327)
++|+.
T Consensus 353 ~~N~~ 357 (597)
T 3oja_B 353 SHNDW 357 (597)
T ss_dssp CSSCE
T ss_pred eCCCC
Confidence 88864
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.8e-29 Score=248.30 Aligned_cols=277 Identities=21% Similarity=0.274 Sum_probs=162.0
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCc-ccc-cCCcccccCC-------CCCEEEccCccccccCcc--ccc
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNK-LSG-TIPNSIINAS-------KLITLNLGYNYFSGLIPN--TFG 69 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~--~l~ 69 (327)
|++|++++|.+.+.+|..+. .+++|++|++++|. +++ .+|..+..++ +|++|++++|.++ .+|. .+.
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 68999999999989998888 99999999999998 887 6787666554 9999999999999 7888 899
Q ss_pred CCCCCcEEeCCCCccccc------------cCCCCCCcccCchhhhhcccc-ccEEEccCCcccccCCccccCCCC--Cc
Q 040487 70 NLRFLNWLSPVQNYLMTK------------PLAANPLRGFLPSLVSNFSAS-LQEFNAYGCELKGSIPQEIGNLSG--LI 134 (327)
Q Consensus 70 ~l~~L~~L~l~~n~l~~~------------~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~~--L~ 134 (327)
++++|++|++++|.++.+ ++++|.+. .+|..+..++ + |+.|++++|.+. .+|..+..+.. |+
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFT-DQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647 (876)
T ss_dssp TCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEEC-TTCCEEECCSSCCC-SCCSCCCTTCSSCEE
T ss_pred cCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhcc-ccCCEEECcCCCCC-cCchhhhccccCCCC
Confidence 999999999999987642 33344443 3444444444 3 555555555544 34444433322 55
Q ss_pred EEEccCCcccCCCchhc---c--CCCCCCEEEccCCccccccCcccc-CccccchhhccC--------------------
Q 040487 135 VLNLFNNDLIGTIPKTV---G--GLQQLQGLDLFGNNLQGSIPYDLC-NLKRLYSLLLQG-------------------- 188 (327)
Q Consensus 135 ~L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~l~l~~-------------------- 188 (327)
.|++++|.+.+.+|... . ..++|+.|++++|.++ .+|..+. .++.|+.|.+++
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 55555555443332111 1 1234555555555554 3443332 344444444311
Q ss_pred CCCCCEEEcCCCcccccCCcccc--CccCCcEEecCCCcCCCCCch---hhhccccccccc------C------ccccCC
Q 040487 189 LVSLRELYLDSNKLSSSIPSSFW--NLEYILQIDLSSNSLSGSLLP---HIQKLKQQSLRK------N------SQVIGA 251 (327)
Q Consensus 189 ~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~ls~n~l~~~~~~---~l~~L~~l~l~~------~------~~~l~~ 251 (327)
+++|+.|++++|.++ .+|..+. .+++|+.|++++|.+++ +|. .+++|+.|++++ | |..+..
T Consensus 727 l~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~ 804 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804 (876)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence 114555555555555 4444443 55555555555555554 222 223344444433 1 344445
Q ss_pred CCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCC
Q 040487 252 LPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNY 287 (327)
Q Consensus 252 ~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~ 287 (327)
+++|+.|++++|++ +.+|.. ..++|+.|++++|+
T Consensus 805 L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 805 CPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNP 838 (876)
T ss_dssp CSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCT
T ss_pred CCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCC
Confidence 55555555555555 344443 22455555555553
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.8e-28 Score=219.06 Aligned_cols=260 Identities=23% Similarity=0.324 Sum_probs=175.0
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|+++++.+. .++. +. .+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +++.++++|++|+++
T Consensus 46 L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 46 ITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLN 118 (347)
T ss_dssp CSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECT
T ss_pred ccEEEEeCCccc-cchh-hh-hcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECc
Confidence 578899999887 5664 55 78999999999998884 444 8889999999999998874 3 468899999999998
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.++. ++. +..++ +|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|
T Consensus 119 ~n~i~~-----------~~~-~~~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 119 EDNISD-----------ISP-LANLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp TSCCCC-----------CGG-GTTCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred CCcccC-----------chh-hccCC-ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 888765 222 44454 67777777775443333 36666777777777776653322 5566677777
Q ss_pred EccCCccccccCccccCccccchhhc-----------cCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCC
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLL-----------QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGS 229 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l-----------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 229 (327)
++++|.+++ ++. +..++.|+.+.+ ..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 183 ~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 183 SLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp ECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred EccCCcccc-ccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 777776652 222 445555555443 345677777777777764332 66677777777777777653
Q ss_pred C-chhhhcccccccccC----ccccCCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCC
Q 040487 230 L-LPHIQKLKQQSLRKN----SQVIGALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNY 287 (327)
Q Consensus 230 ~-~~~l~~L~~l~l~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~ 287 (327)
. ...+++|+.|++++| ...+..+++|+.|++++|++++..+.. ..+++|+.+++++|+
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 1 234556677777776 344566777777777777776544332 456777777777774
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.5e-28 Score=214.50 Aligned_cols=245 Identities=21% Similarity=0.192 Sum_probs=194.3
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCcccccc--CcccccCCCCCcEEeC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGL--IPNTFGNLRFLNWLSP 79 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l 79 (327)
+.++.++++++ .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 35778888887 7887654 6899999999999854445578999999999999988733 2566778999999999
Q ss_pred CCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCC-ccccCCCCCcEEEccCCcccCCCchhccCCCCCC
Q 040487 80 VQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIP-QEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQ 158 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 158 (327)
++|.++. +|..+..++ +|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 86 s~n~i~~-----------l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 86 SFNGVIT-----------MSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp CSCSEEE-----------EEEEEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred CCCcccc-----------ChhhcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 9988765 556666776 99999999999885544 5788899999999999998877888888899999
Q ss_pred EEEccCCcccc-ccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcc
Q 040487 159 GLDLFGNNLQG-SIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKL 237 (327)
Q Consensus 159 ~L~l~~n~~~~-~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L 237 (327)
.|++++|.+++ ..|..+..+ ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..
T Consensus 154 ~L~l~~n~l~~~~~~~~~~~l-----------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---- 218 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDIFTEL-----------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP---- 218 (306)
T ss_dssp EEECTTCEEGGGEECSCCTTC-----------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG----
T ss_pred EEECCCCccccccchhHHhhC-----------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh----
Confidence 99999999875 466666554 47899999999999777888889999999999999988755432
Q ss_pred cccccccCccccCCCCCCCeEeCcCCcceeeCCCC-CCC-CCcceecccCCCC
Q 040487 238 KQQSLRKNSQVIGALPHLKQLNLSYNRLEGEIPIK-GPF-RNFSTQSCFGNYA 288 (327)
Q Consensus 238 ~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~-~~L~~l~l~~n~~ 288 (327)
+..+++|+.|++++|++++..+.. ..+ ++|+.+++++|+.
T Consensus 219 -----------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 219 -----------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp -----------GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred -----------ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 345678888888888887766544 445 4788888888863
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=243.95 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=57.4
Q ss_pred CeEEEccCCCCcccCChh--hhcCCCCCCEEEcccCcccccCC-cccccCCCCCEEEccCccccccCcccccCC--CCCc
Q 040487 1 MIVINLIQNQLSGHLPST--MGCTLPNLERLTLSHNKLSGTIP-NSIINASKLITLNLGYNYFSGLIPNTFGNL--RFLN 75 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~--~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~ 75 (327)
|++|++++|.+.+.+|.. +. .+++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFR-NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCS-SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred cCEeeCcCCCCCcccccCcccc-ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 578888888888666654 44 88888999999888875544 467888888888888888876655555444 4444
Q ss_pred EEeCCCC
Q 040487 76 WLSPVQN 82 (327)
Q Consensus 76 ~L~l~~n 82 (327)
.|++++|
T Consensus 178 ~L~L~~n 184 (844)
T 3j0a_A 178 FFSLAAN 184 (844)
T ss_dssp CCEECCS
T ss_pred eEECCCC
Confidence 4444443
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5e-29 Score=223.34 Aligned_cols=263 Identities=21% Similarity=0.232 Sum_probs=207.3
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
+.+.++++++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 35 ~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3577888888 7898765 68999999999999766668999999999999999999877888999999999999999
Q ss_pred ccccccCCCCCCcccCchh-hhhccccccEEEccCCcccccCC-ccccCCCCCcEEEccCCc-ccCCCchhccCCCCCCE
Q 040487 83 YLMTKPLAANPLRGFLPSL-VSNFSASLQEFNAYGCELKGSIP-QEIGNLSGLIVLNLFNND-LIGTIPKTVGGLQQLQG 159 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~ 159 (327)
.++. ++.. +..++ +|++|++++|.+....+ ..+..+++|++|++++|. +....+..+..+++|+.
T Consensus 111 ~l~~-----------~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 111 YLSN-----------LSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp CCSS-----------CCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cCCc-----------CCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 8765 5544 67777 99999999999984433 378899999999999984 66566678889999999
Q ss_pred EEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhh----
Q 040487 160 LDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQ---- 235 (327)
Q Consensus 160 L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~---- 235 (327)
|++++|.+++..|..+..++ +|++|++++|.++......+..+++|+.|++++|.+++..+..+.
T Consensus 179 L~l~~n~l~~~~~~~l~~l~-----------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQ-----------NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp EEEEETTCCEECTTTTTTCS-----------EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred EECCCCCcCccCHHHHhccc-----------cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 99999999977777777654 678888888888633333344578888888888888775544332
Q ss_pred --cccccccccC----------ccccCCCCCCCeEeCcCCcceeeCCCC--CCCCCcceecccCCCCCCCCC
Q 040487 236 --KLKQQSLRKN----------SQVIGALPHLKQLNLSYNRLEGEIPIK--GPFRNFSTQSCFGNYALGSPP 293 (327)
Q Consensus 236 --~L~~l~l~~~----------~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~L~~l~l~~n~~l~~~p 293 (327)
.++.++++++ |..+..+++|++|++++|+++ .+|.. ..+++|+.+++++|+..+..|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 2333333333 566788999999999999998 56654 678999999999997555543
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=5.5e-28 Score=232.22 Aligned_cols=134 Identities=25% Similarity=0.284 Sum_probs=106.7
Q ss_pred CeEEEccCCCCcccCCh-hhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQNQLSGHLPS-TMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 79 (327)
+++|||++|+++ .+|. +|. .+++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 54 ~~~LdLs~N~i~-~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 54 TKNLDLSFNPLR-HLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp CCEEECTTSCCC-EECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCEEEeeCCCCC-CCCHHHHh-CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 578999999998 5554 555 9999999999999999777788999999999999999998766678999999999999
Q ss_pred CCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccc-cCCccccCCCCCcEEEccCCcccCCC
Q 040487 80 VQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKG-SIPQEIGNLSGLIVLNLFNNDLIGTI 147 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~ 147 (327)
++|.+++. .+..++.++ +|++|++++|.+.. ..|..+..+++|++|++++|.+.+..
T Consensus 132 s~N~l~~l----------~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 132 VETNLASL----------ENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp TTSCCCCS----------TTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCcCCCC----------ChhhhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 99887651 222356666 88888888888764 34666777888888888888776433
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.2e-28 Score=231.58 Aligned_cols=187 Identities=23% Similarity=0.263 Sum_probs=145.8
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
+.+.++++++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 9 ~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred eEECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 3567788887 8998764 79999999999999888889999999999999999999888889999999999999988
Q ss_pred ccccccCCCCCCcccCchhhhhccccccEEEccCCcccc-cCCccccCCCCCcEEEccCCcccCCC-chhccCCCCCCEE
Q 040487 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKG-SIPQEIGNLSGLIVLNLFNNDLIGTI-PKTVGGLQQLQGL 160 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L 160 (327)
.+++ ..+..++.++ +|++|++++|.+.. ..+..+..+++|++|++++|.+.+.+ +..+..+++|+.|
T Consensus 85 ~l~~----------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 85 HLSS----------LSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp CCCS----------CCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred ccCc----------cCHHHhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 8754 2444577776 88888888888875 34567788888888888888743333 3567778888888
Q ss_pred EccCCccccccCccccCccccchhhcc-------------CCCCCCEEEcCCCcccc
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQ-------------GLVSLRELYLDSNKLSS 204 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~-------------~~~~L~~L~l~~n~l~~ 204 (327)
++++|.+++..|..+..+++|+.+.+. .+++|++|++++|.+++
T Consensus 154 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred eccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 888888887777777777776666542 34566666666665553
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.8e-28 Score=216.26 Aligned_cols=223 Identities=21% Similarity=0.251 Sum_probs=164.4
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
..+++++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.++. +|..
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-----------lp~~ 145 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-----------LPAS 145 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC-----------CCGG
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc-----------CcHH
Confidence 3467777777777777 66666777777777777777777 667777777777777777776643 6666
Q ss_pred hhhccccccEEEccCCcccccCCccccC---------CCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccC
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGN---------LSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIP 172 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 172 (327)
+..++ +|++|++++|...+.+|..+.. +++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|
T Consensus 146 l~~l~-~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~ 222 (328)
T 4fcg_A 146 IASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222 (328)
T ss_dssp GGGCT-TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCC
T ss_pred HhcCc-CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCc
Confidence 77776 7777777777666666665543 788888888888877 66777778888888888888887 455
Q ss_pred ccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCC
Q 040487 173 YDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGAL 252 (327)
Q Consensus 173 ~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~ 252 (327)
..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+. .+
T Consensus 223 ~~l~~-----------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~---------------~l 276 (328)
T 4fcg_A 223 PAIHH-----------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH---------------RL 276 (328)
T ss_dssp GGGGG-----------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG---------------GC
T ss_pred hhhcc-----------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh---------------cC
Confidence 55544 34678888888887777888888888888888888877777664433 56
Q ss_pred CCCCeEeCcCCcceeeCCCC-CCCCCcceecccCC
Q 040487 253 PHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGN 286 (327)
Q Consensus 253 ~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n 286 (327)
++|+.|++++|++.+.+|.. ..+++++.+.+..+
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 77888888888877777766 67778888877766
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=9.3e-28 Score=222.98 Aligned_cols=268 Identities=24% Similarity=0.342 Sum_probs=154.0
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.+. .+|. +. .+++|++|++++|.+++. +. +..+++|++|++++|.+++. +. +.++++|++|+++
T Consensus 70 L~~L~Ls~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 70 LTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELS 142 (466)
T ss_dssp CCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEE
T ss_pred CCEEECCCCccC-Cchh-hh-ccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECC
Confidence 456677777666 3443 43 666777777777666633 22 66667777777777666633 22 6666666666666
Q ss_pred CCccccc---------------------------------cCCCCCCcccCchhhhhccccccEEEccCCcccccCCccc
Q 040487 81 QNYLMTK---------------------------------PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEI 127 (327)
Q Consensus 81 ~n~l~~~---------------------------------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 127 (327)
+|.++.. +++++.+... ..+..++ +|++|++++|.+.+..+ +
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~l~~n~l~~~~~--~ 217 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP--L 217 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCGG--G
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCC-CCCEEEecCCccccccc--c
Confidence 6655432 1122222111 1123333 44444444444432222 3
Q ss_pred cCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhc-----------cCCCCCCEEE
Q 040487 128 GNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLL-----------QGLVSLRELY 196 (327)
Q Consensus 128 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l-----------~~~~~L~~L~ 196 (327)
..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.+.+ ..+++|+.|+
T Consensus 218 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 293 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE 293 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEE
Confidence 3344455555555544421 234455566666666665553222 455555555544 2355677777
Q ss_pred cCCCcccccCCccccCccCCcEEecCCCcCCCCCc-hhhhcccccccccC----ccccCCCCCCCeEeCcCCcceeeCCC
Q 040487 197 LDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL-PHIQKLKQQSLRKN----SQVIGALPHLKQLNLSYNRLEGEIPI 271 (327)
Q Consensus 197 l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~L~~l~l~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~ 271 (327)
+++|.+++..+ +..+++|+.|++++|.+++..| ..+++|+.|++++| ...+..+++|+.|++++|++++..|
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~- 370 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP- 370 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch-
Confidence 77777664332 5667777777777777766443 34566777777776 3456777888888888888877665
Q ss_pred CCCCCCcceecccCCC
Q 040487 272 KGPFRNFSTQSCFGNY 287 (327)
Q Consensus 272 ~~~~~~L~~l~l~~n~ 287 (327)
...+++|+.+++++|+
T Consensus 371 ~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 371 LANLTRITQLGLNDQA 386 (466)
T ss_dssp GTTCTTCCEEECCCEE
T ss_pred hhcCCCCCEEeccCCc
Confidence 5677788888888885
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.8e-28 Score=215.42 Aligned_cols=223 Identities=22% Similarity=0.268 Sum_probs=193.7
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|++++|.+. .+|..++ .+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|+++
T Consensus 83 l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred eeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 468999999998 8999988 7999999999999999 88999999999999999999998 789899999999999998
Q ss_pred CCccccccCCCCCCcccCchhhh---------hccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhc
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVS---------NFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTV 151 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~---------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 151 (327)
+|.+.+ .+|..+. .++ +|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+
T Consensus 159 ~n~~~~----------~~p~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l 225 (328)
T 4fcg_A 159 ACPELT----------ELPEPLASTDASGEHQGLV-NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI 225 (328)
T ss_dssp EETTCC----------CCCSCSEEEC-CCCEEEST-TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred CCCCcc----------ccChhHhhccchhhhccCC-CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence 876533 2444433 366 9999999999998 778889999999999999999984 66678
Q ss_pred cCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 152 GGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 152 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
..+++|+.|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-----------~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRA-----------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCC-----------CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCC-----------CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 8999999999999999888888776644 79999999999888999999999999999999999999888
Q ss_pred hhhhcccccccccCccccCCCCCCCeEeCcCCcce
Q 040487 232 PHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLE 266 (327)
Q Consensus 232 ~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~ 266 (327)
..+. .+++|+.+++..+.+.
T Consensus 295 ~~l~---------------~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 295 SLIA---------------QLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGG---------------GSCTTCEEECCGGGSC
T ss_pred HHHh---------------hccCceEEeCCHHHHH
Confidence 6555 5678888888877654
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9e-28 Score=210.93 Aligned_cols=231 Identities=24% Similarity=0.227 Sum_probs=196.0
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCccccc--CCcccccCCCCCEEEccCccccccCcccccCCCCCcEEe
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGT--IPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLS 78 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 78 (327)
|++|++++|++. .+|..++..+++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 30 l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 30 ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 578999999998 78877655999999999999998833 3567778999999999999998 5777899999999999
Q ss_pred CCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccC-CCchhccCCCCC
Q 040487 79 PVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIG-TIPKTVGGLQQL 157 (327)
Q Consensus 79 l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L 157 (327)
+++|.++... ....+..++ +|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|
T Consensus 108 l~~n~l~~~~---------~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 108 FQHSNLKQMS---------EFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp CTTSEEESST---------TTTTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCcccccc---------cchhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 9999986621 113566666 99999999999998888889999999999999999986 577888999999
Q ss_pred CEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcc
Q 040487 158 QGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKL 237 (327)
Q Consensus 158 ~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L 237 (327)
+.|++++|.+++..|..+..+ ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--- 243 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSL-----------SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--- 243 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTC-----------TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC---
T ss_pred CEEECCCCCcCCcCHHHhcCC-----------CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH---
Confidence 999999999997667666654 479999999999997777788899999999999999998776443
Q ss_pred cccccccCccccCCC-CCCCeEeCcCCcceeeC
Q 040487 238 KQQSLRKNSQVIGAL-PHLKQLNLSYNRLEGEI 269 (327)
Q Consensus 238 ~~l~l~~~~~~l~~~-~~L~~L~l~~n~l~~~~ 269 (327)
..+ ++|+.|++++|++++..
T Consensus 244 ------------~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 244 ------------QHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp ------------CCCCTTCCEEECTTCCEECSG
T ss_pred ------------HhhhccCCEEEccCCCeeccc
Confidence 345 48999999999998754
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.3e-27 Score=209.55 Aligned_cols=256 Identities=19% Similarity=0.170 Sum_probs=185.3
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|++++|++++..+..+. .+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 54 l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 57899999999854444565 9999999999999999877899999999999999999998 5665543 799999988
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccc--cCCccccCCCCCcEEEccCCcccCCCchhccCCCCCC
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKG--SIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQ 158 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 158 (327)
+|.++. ..+..+..++ +|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|..+. ++|+
T Consensus 130 ~n~l~~----------~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~ 195 (330)
T 1xku_A 130 ENEITK----------VRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLT 195 (330)
T ss_dssp SSCCCB----------BCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCS
T ss_pred CCcccc----------cCHhHhcCCc-cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCC
Confidence 887754 2344566676 88888888888753 456677888888888888888873 444432 7888
Q ss_pred EEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchh---hh
Q 040487 159 GLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPH---IQ 235 (327)
Q Consensus 159 ~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~---l~ 235 (327)
.|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|.++ .+|.. ++
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~-----------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 263 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLN-----------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCT-----------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS
T ss_pred EEECCCCcCCccCHHHhcCCC-----------CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC
Confidence 888888888866666665544 5667777777776555556666677777777777666 33332 34
Q ss_pred cccccccccC------cccc------CCCCCCCeEeCcCCcceee-CC--CCCCCCCcceecccCC
Q 040487 236 KLKQQSLRKN------SQVI------GALPHLKQLNLSYNRLEGE-IP--IKGPFRNFSTQSCFGN 286 (327)
Q Consensus 236 ~L~~l~l~~~------~~~l------~~~~~L~~L~l~~n~l~~~-~~--~~~~~~~L~~l~l~~n 286 (327)
+|+.|++++| +..+ ...+.|+.+++++|++... ++ ....++.++.+++++|
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 4666666665 1222 2347899999999998642 22 2255778999999988
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.8e-28 Score=210.53 Aligned_cols=244 Identities=22% Similarity=0.243 Sum_probs=197.4
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
++++.+++++. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 35788888887 788765 47999999999999977777899999999999999999977788999999999999998
Q ss_pred Cc-cccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 82 NY-LMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 82 n~-l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
|. ++. ..+..+..++ +|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 90 n~~l~~----------~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 90 NAQLRS----------VDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCC----------CCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCccc----------cCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 86 543 2355677777 99999999999997778889999999999999999997766778899999999
Q ss_pred EccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhccccc
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQ 240 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l 240 (327)
++++|.+++..+..+.. +++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+
T Consensus 159 ~l~~n~l~~~~~~~~~~-----------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------ 221 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRG-----------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL------ 221 (285)
T ss_dssp ECCSSCCCEECTTTTTT-----------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH------
T ss_pred ECCCCcccccCHHHhcC-----------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc------
Confidence 99999998444444554 4579999999999998889999999999999999999987655433
Q ss_pred ccccCccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCC
Q 040487 241 SLRKNSQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGN 286 (327)
Q Consensus 241 ~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n 286 (327)
..+++|+.|++++|++.+..+.......++.+....+
T Consensus 222 ---------~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~ 258 (285)
T 1ozn_A 222 ---------APLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258 (285)
T ss_dssp ---------TTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEEC
T ss_pred ---------ccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccC
Confidence 4677888899998888765443212222444444444
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.7e-27 Score=219.02 Aligned_cols=242 Identities=23% Similarity=0.235 Sum_probs=182.8
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
.++.++.++. .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 58 ~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4566666676 6787654 68899999999998777888889999999999999998777788889999999998888
Q ss_pred ccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCC-cccCCCchhccCCCCCCEEE
Q 040487 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNN-DLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~ 161 (327)
.++. ..+..+..++ +|++|++++|.+....+..+..+++|++|++++| .+....+..|..+++|+.|+
T Consensus 134 ~l~~----------~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 134 WLTV----------IPSGAFEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp CCSB----------CCTTTSSSCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred cCCc----------cChhhhcccC-CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 8755 1223355566 8999999999888666667888899999999884 44434444678889999999
Q ss_pred ccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccc
Q 040487 162 LFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQS 241 (327)
Q Consensus 162 l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~ 241 (327)
+++|.++ .+|. + ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..
T Consensus 203 L~~n~l~-~~~~-~-----------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------- 261 (452)
T 3zyi_A 203 LGMCNIK-DMPN-L-----------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA-------- 261 (452)
T ss_dssp CTTSCCS-SCCC-C-----------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT--------
T ss_pred CCCCccc-cccc-c-----------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH--------
Confidence 9999887 3432 2 23557889999999998877888888999999999999888765533
Q ss_pred cccCccccCCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCC
Q 040487 242 LRKNSQVIGALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNY 287 (327)
Q Consensus 242 l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~ 287 (327)
+..+++|+.|++++|++++..+.. ..+++|+.+++++||
T Consensus 262 -------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 -------FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -------TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -------hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 345667777777777776433322 456667777777775
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.6e-27 Score=217.48 Aligned_cols=242 Identities=24% Similarity=0.234 Sum_probs=189.9
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
.++..+.++. .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 47 ~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566677776 7887764 78999999999999777788899999999999999998777788999999999998888
Q ss_pred ccccccCCCCCCcccCch-hhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCc-ccCCCchhccCCCCCCEE
Q 040487 83 YLMTKPLAANPLRGFLPS-LVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNND-LIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L 160 (327)
.++. ++. .+..++ +|++|++++|.+....+..+..+++|++|++++|. +....+..|..+++|+.|
T Consensus 123 ~l~~-----------~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 123 RLTT-----------IPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CCSS-----------CCTTTSCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred cCCe-----------eCHhHhhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 8765 333 455666 89999999999887666778889999999999854 444444568889999999
Q ss_pred EccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhccccc
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQ 240 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l 240 (327)
++++|.++ .+|. + ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+.
T Consensus 191 ~L~~n~l~-~~~~-~-----------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------- 249 (440)
T 3zyj_A 191 NLAMCNLR-EIPN-L-----------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN-------- 249 (440)
T ss_dssp ECTTSCCS-SCCC-C-----------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------
T ss_pred cCCCCcCc-cccc-c-----------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh--------
Confidence 99999887 4442 2 3356789999999999988888889999999999999998876553
Q ss_pred ccccCccccCCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCCC
Q 040487 241 SLRKNSQVIGALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNYA 288 (327)
Q Consensus 241 ~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~~ 288 (327)
.+..+++|+.|++++|++++..+.. ..+++|+.+++++||.
T Consensus 250 -------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 250 -------AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -------SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred -------hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 3446677888888888877543332 5577788888888864
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.1e-27 Score=211.02 Aligned_cols=256 Identities=21% Similarity=0.177 Sum_probs=185.4
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.+.+..|..+. .+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 56 l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp CCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CeEEECCCCcCCccCHhHhh-CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 57899999999855555666 9999999999999999888899999999999999999998 5666554 899999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccc--cCCccccCCCCCcEEEccCCcccCCCchhccCCCCCC
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKG--SIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQ 158 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 158 (327)
+|.++. ..+..+..++ +|++|++++|.++. ..+..+..+ +|++|++++|.+.+ +|..+. ++|+
T Consensus 132 ~n~i~~----------~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~ 196 (332)
T 2ft3_A 132 DNRIRK----------VPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLN 196 (332)
T ss_dssp SSCCCC----------CCSGGGSSCS-SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCS
T ss_pred CCccCc----------cCHhHhCCCc-cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCC
Confidence 988754 2233466676 99999999998863 556667767 89999999999884 554433 7889
Q ss_pred EEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchh---hh
Q 040487 159 GLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPH---IQ 235 (327)
Q Consensus 159 ~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~---l~ 235 (327)
.|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|.++ .+|.. ++
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~-----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYS-----------KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCT-----------TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred EEECCCCcCCccCHHHhcCCC-----------CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence 999999998866656666655 4666666666666555555666666666666666665 23332 33
Q ss_pred cccccccccC------ccccC------CCCCCCeEeCcCCcce--eeCCC-CCCCCCcceecccCCC
Q 040487 236 KLKQQSLRKN------SQVIG------ALPHLKQLNLSYNRLE--GEIPI-KGPFRNFSTQSCFGNY 287 (327)
Q Consensus 236 ~L~~l~l~~~------~~~l~------~~~~L~~L~l~~n~l~--~~~~~-~~~~~~L~~l~l~~n~ 287 (327)
+|+.|++++| +..+. ..+.|+.|++++|++. +..|. ...++.|+.+++++|.
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4555566655 12222 2467999999999987 22322 2568889999999884
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=5.3e-27 Score=217.00 Aligned_cols=265 Identities=20% Similarity=0.171 Sum_probs=202.1
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.+.+ +| .+. .+++|++|++++|.+++ ++ ++.+++|++|++++|.+++. + +.++++|++|+++
T Consensus 44 L~~L~Ls~n~l~~-~~-~l~-~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 44 LTSLDCHNSSITD-MT-GIE-KLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp CCEEECCSSCCCC-CT-TGG-GCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred CCEEEccCCCccc-Ch-hhc-ccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 6889999999984 66 566 89999999999999995 44 88999999999999999854 3 8899999999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.+++ ++ +..++ +|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|+.|
T Consensus 115 ~N~l~~-----------l~--~~~l~-~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 115 TNKLTK-----------LD--VSQNP-LLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp SSCCSC-----------CC--CTTCT-TCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCcCCe-----------ec--CCCCC-cCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 998865 22 44555 888888888888753 3677888888888888544444 36678888888
Q ss_pred EccCCccccccCccccCccccchhhc----------cCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLL----------QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL 230 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l----------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 230 (327)
++++|.+++ +| +..++.|+.+.+ +.+++|+.|++++|.+++ +| +..+++|+.|++++|.+++..
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 888888874 44 666666666654 457899999999999996 55 778999999999999999877
Q ss_pred chhhhccccc----------ccccC----ccccCCCCCCCeEeCcCCcceeeCCCC---------CCCCCcceecccCCC
Q 040487 231 LPHIQKLKQQ----------SLRKN----SQVIGALPHLKQLNLSYNRLEGEIPIK---------GPFRNFSTQSCFGNY 287 (327)
Q Consensus 231 ~~~l~~L~~l----------~l~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~---------~~~~~L~~l~l~~n~ 287 (327)
+..+++|+.+ ++++| .-.+..+++|+.|++++|+..+.+|.. ..+++|+.+++++|
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N- 328 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT- 328 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-
Confidence 7777766544 45544 123467789999999999876665532 44567788888887
Q ss_pred CCCCCCCCCCCCCCCC
Q 040487 288 ALGSPPILQVPPYKED 303 (327)
Q Consensus 288 ~l~~~p~~~~~~c~~~ 303 (327)
.+..++ +..|+..
T Consensus 329 ~l~~l~---l~~l~~L 341 (457)
T 3bz5_A 329 ELTELD---VSHNTKL 341 (457)
T ss_dssp CCSCCC---CTTCTTC
T ss_pred cccccc---cccCCcC
Confidence 453343 3455543
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.3e-28 Score=226.61 Aligned_cols=140 Identities=26% Similarity=0.311 Sum_probs=114.8
Q ss_pred cCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCcccc--ccCccccCccccchhhc--------------cCCCC
Q 040487 128 GNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQG--SIPYDLCNLKRLYSLLL--------------QGLVS 191 (327)
Q Consensus 128 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~l~l--------------~~~~~ 191 (327)
..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ .+|..+..+++|+.+++ ..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567889999999999988788888899999999999999985 55667888888888766 23578
Q ss_pred CCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCch---hhhcccccccccC-----cc-ccCCCCCCCeEeCcC
Q 040487 192 LRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLP---HIQKLKQQSLRKN-----SQ-VIGALPHLKQLNLSY 262 (327)
Q Consensus 192 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~---~l~~L~~l~l~~~-----~~-~l~~~~~L~~L~l~~ 262 (327)
|++|++++|.+++..|..+. ++|+.|++++|.++ .+|. .+++|+.|++++| |. .+..+++|++|++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 99999999999877776554 79999999999998 4444 3567888899988 44 388899999999999
Q ss_pred CcceeeCC
Q 040487 263 NRLEGEIP 270 (327)
Q Consensus 263 n~l~~~~~ 270 (327)
|++++..+
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 99987543
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=4.1e-27 Score=213.68 Aligned_cols=255 Identities=21% Similarity=0.170 Sum_probs=192.5
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
.++++++|+++++.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++. ..|..
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY----------LPPHV 112 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC----------CCTTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc----------CCHHH
Confidence 57899999999999995555557899999999999999997777789999999999999888754 34455
Q ss_pred hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCcccc
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRL 181 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 181 (327)
+..++ +|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++. + +..++.|
T Consensus 113 ~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L 188 (390)
T 3o6n_A 113 FQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSL 188 (390)
T ss_dssp TTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTC
T ss_pred hcCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--ccccccc
Confidence 77777 999999999999955445578999999999999999987788899999999999999999843 2 3334444
Q ss_pred chhhcc-----------------------------CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCch
Q 040487 182 YSLLLQ-----------------------------GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLP 232 (327)
Q Consensus 182 ~~l~l~-----------------------------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 232 (327)
+.+.++ .+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|.
T Consensus 189 ~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp SEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 444331 123566777777776642 3566777888888888877766554
Q ss_pred hh---hcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCCCCCCCC
Q 040487 233 HI---QKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNYALGSPP 293 (327)
Q Consensus 233 ~l---~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~l~~~p 293 (327)
.+ ++|+.|++++| +..+..+++|++|++++|++++..+....+++|+.+++++|+ +..+|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeC
Confidence 43 45667777777 444566778888888888877433333557778888888884 54443
No 48
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1e-26 Score=215.92 Aligned_cols=288 Identities=23% Similarity=0.310 Sum_probs=169.5
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
++.|++.++.+. .+|. +. .+++|++|++++|.+++ ++. +..+++|++|++++|.+.+.. . +.++++|++|+++
T Consensus 48 l~~L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 48 VTTLQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADIT-P-LANLTNLTGLTLF 120 (466)
T ss_dssp CCEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECC
T ss_pred ccEEecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccCh-h-hcCCCCCCEEECC
Confidence 578999999988 6774 54 79999999999999995 444 899999999999999998544 3 9999999999999
Q ss_pred CCcccccc------------CCCCCCcccCch--------------------hhhhccccccEEEccCCcccccCCcccc
Q 040487 81 QNYLMTKP------------LAANPLRGFLPS--------------------LVSNFSASLQEFNAYGCELKGSIPQEIG 128 (327)
Q Consensus 81 ~n~l~~~~------------l~~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 128 (327)
+|.+++.+ ++++.+.+ ++. .+..++ +|+.|++++|.+... ..+.
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~l~ 196 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLT-TLERLDISSNKVSDI--SVLA 196 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCT-TCCEEECCSSCCCCC--GGGG
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCC-CCCEEECcCCcCCCC--hhhc
Confidence 99886631 11222111 000 122222 344444444433321 1233
Q ss_pred CCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhc-----------cCCCCCCEEEc
Q 040487 129 NLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLL-----------QGLVSLRELYL 197 (327)
Q Consensus 129 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l-----------~~~~~L~~L~l 197 (327)
.+++|++|++++|.+.+..+ +..+++|+.|++++|.+++ + ..+..++.|+.+.+ ..+++|+.|++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEEC
Confidence 44444444444444443222 3344455555555555442 1 23444444444443 23455666666
Q ss_pred CCCcccccCCccccCccCCcEEecCCCcCCCCCc-hhhhcccccccccC----ccccCCCCCCCeEeCcCCcceeeCCCC
Q 040487 198 DSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL-PHIQKLKQQSLRKN----SQVIGALPHLKQLNLSYNRLEGEIPIK 272 (327)
Q Consensus 198 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~L~~l~l~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~ 272 (327)
++|.+++..+ +..+++|+.|++++|.+++..+ ..+++|+.|++++| ...+..+++|+.|++++|++++. +..
T Consensus 273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l 349 (466)
T 1o6v_A 273 GANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-SSL 349 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-GGG
T ss_pred CCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc-hhh
Confidence 6666653322 5556666666666666655332 34456666666666 12256677777777777777643 444
Q ss_pred CCCCCcceecccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 040487 273 GPFRNFSTQSCFGNYALGSPPILQVPPYKEDNGEGTE 309 (327)
Q Consensus 273 ~~~~~L~~l~l~~n~~l~~~p~~~~~~c~~~~~~~~~ 309 (327)
..+++|+.+++++|+..+..| +..|+........
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP---LANLTRITQLGLN 383 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECC
T ss_pred ccCCCCCEEeCCCCccCccch---hhcCCCCCEEecc
Confidence 667778888888774324444 2344444433333
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.5e-27 Score=205.13 Aligned_cols=208 Identities=24% Similarity=0.206 Sum_probs=179.1
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCcc-ccccCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNY-FSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l 79 (327)
|++|++++|.+.+..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|. ++...+..+..+++|++|++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp CSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEeeCCcCCccCHHHcc-cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 57899999999854444555 99999999999999998778899999999999999997 77666788999999999999
Q ss_pred CCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCE
Q 040487 80 VQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQG 159 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 159 (327)
++|.++. ..+..+..++ +|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 113 ~~n~l~~----------~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 113 DRCGLQE----------LGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTSCCCC----------CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCcCCE----------ECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 9888754 2455667777 9999999999999766667899999999999999998766667899999999
Q ss_pred EEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 160 LDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 160 L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
|++++|.+++..|..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+....+
T Consensus 182 L~l~~n~l~~~~~~~~~~l-----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDL-----------GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp EECCSSCCCEECTTTTTTC-----------TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred EECCCCcccccCHhHccCc-----------ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 9999999997777777664 479999999999997666778999999999999999876543
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.4e-26 Score=212.64 Aligned_cols=228 Identities=22% Similarity=0.236 Sum_probs=190.7
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|++++|++.+..|..+. .+++|++|++++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus 77 l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp CSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred ccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 57899999999966676776 99999999999999998888899999999999999999996666779999999999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCC-ccccCCCCCcEEEccCCcccCCCchhccCCCCCCE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIP-QEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQG 159 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 159 (327)
+|.++. ..+..+..++ +|++|++++|.....++ ..+..+++|++|++++|.+.+ +| .+..+++|+.
T Consensus 156 ~N~l~~----------~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 222 (452)
T 3zyi_A 156 NNPIES----------IPSYAFNRVP-SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEE 222 (452)
T ss_dssp SCCCCE----------ECTTTTTTCT-TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCE
T ss_pred CCCcce----------eCHhHHhcCC-cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccE
Confidence 998765 2233566676 99999999965444444 468899999999999999984 34 4788999999
Q ss_pred EEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccc
Q 040487 160 LDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQ 239 (327)
Q Consensus 160 L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~ 239 (327)
|++++|.+++..|..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus 223 L~Ls~N~l~~~~~~~~~~l-----------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------- 284 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGL-----------SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD------- 284 (452)
T ss_dssp EECTTSCCSEECGGGGTTC-----------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-------
T ss_pred EECcCCcCcccCcccccCc-----------cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH-------
Confidence 9999999997667666664 4799999999999988888999999999999999999865543
Q ss_pred cccccCccccCCCCCCCeEeCcCCcceee
Q 040487 240 QSLRKNSQVIGALPHLKQLNLSYNRLEGE 268 (327)
Q Consensus 240 l~l~~~~~~l~~~~~L~~L~l~~n~l~~~ 268 (327)
.+..+++|+.|++++|++.+.
T Consensus 285 --------~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 285 --------LFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp --------SSTTCTTCCEEECCSSCEECS
T ss_pred --------HhccccCCCEEEccCCCcCCC
Confidence 344567888888888887654
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=5.2e-26 Score=209.72 Aligned_cols=228 Identities=25% Similarity=0.263 Sum_probs=189.9
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|+|++|++.+..+..+. .+++|++|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 66 l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp CSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 57899999999965556666 99999999999999998778899999999999999999996666689999999999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccC-CccccCCCCCcEEEccCCcccCCCchhccCCCCCCE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSI-PQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQG 159 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 159 (327)
+|.++. ..+..+..++ +|++|++++|.....+ +..+..+++|++|++++|.+. .+| .+..+++|+.
T Consensus 145 ~N~i~~----------~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 145 NNPIES----------IPSYAFNRIP-SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDE 211 (440)
T ss_dssp SCCCCE----------ECTTTTTTCT-TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCE
T ss_pred CCcccc----------cCHHHhhhCc-ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCE
Confidence 988755 2333566676 9999999996544444 446889999999999999998 444 4788999999
Q ss_pred EEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccc
Q 040487 160 LDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQ 239 (327)
Q Consensus 160 L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~ 239 (327)
|++++|.+++..+..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus 212 L~Ls~N~l~~~~~~~~~~l-----------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------- 273 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGL-----------MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD------- 273 (440)
T ss_dssp EECTTSCCCEECTTTTTTC-----------TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT-------
T ss_pred EECCCCccCccChhhhccC-----------ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh-------
Confidence 9999999997667777664 4799999999999988888999999999999999999876553
Q ss_pred cccccCccccCCCCCCCeEeCcCCcceee
Q 040487 240 QSLRKNSQVIGALPHLKQLNLSYNRLEGE 268 (327)
Q Consensus 240 l~l~~~~~~l~~~~~L~~L~l~~n~l~~~ 268 (327)
.+..+++|+.|++++|++...
T Consensus 274 --------~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 274 --------LFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp --------TTSSCTTCCEEECCSSCEECS
T ss_pred --------HhccccCCCEEEcCCCCccCC
Confidence 334567888888888887653
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.7e-28 Score=212.86 Aligned_cols=244 Identities=20% Similarity=0.177 Sum_probs=191.9
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCccc-ccCCcccc-------cCCCCCEEEccCccccccCcccc--cC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLS-GTIPNSII-------NASKLITLNLGYNYFSGLIPNTF--GN 70 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~-~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~l--~~ 70 (327)
|++|++++|.+ .+|..+. .. |++|++++|.++ ..++..+. .+++|++|++++|.+++.+|..+ ..
T Consensus 45 L~~l~l~~n~l--~~p~~~~-~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 45 LEYLLKRVDTE--ADLGQFT-DI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp CTTHHHHCCTT--CCCHHHH-HH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred ceeEeeccccc--ccHHHHH-HH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 34566788888 6888777 22 889999999985 44666554 68999999999999998888876 89
Q ss_pred CCCCcEEeCCCCccccccCCCCCCcccCchhhhhcc----ccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCC
Q 040487 71 LRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFS----ASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGT 146 (327)
Q Consensus 71 l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 146 (327)
+++|++|++++|.+++ .|..+..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 120 l~~L~~L~Ls~N~l~~-----------~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 120 GPDLNILNLRNVSWAT-----------RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp SCCCSEEEEESCBCSS-----------SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred CCCccEEEccCCCCcc-----------hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 9999999999988865 366666661 3999999999999987778999999999999999997644
Q ss_pred --Cchhc--cCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCC-ccccCccCCcEEec
Q 040487 147 --IPKTV--GGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIP-SSFWNLEYILQIDL 221 (327)
Q Consensus 147 --~~~~~--~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l 221 (327)
.+..+ ..+++|+.|++++|.+++ ++.... -.+..+++|++|++++|.+++..| ..+..+++|+.|++
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMET-PSGVCS-------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHH-------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHH-------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 23344 788999999999999872 211100 011235689999999999997664 45667899999999
Q ss_pred CCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCC
Q 040487 222 SSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNY 287 (327)
Q Consensus 222 s~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~ 287 (327)
++|.++ .+|. .+. ++|++|++++|++++. |....+++|+.+++++|+
T Consensus 261 s~N~l~-~ip~---------------~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 261 SFTGLK-QVPK---------------GLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTSCCS-SCCS---------------SCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred CCCccC-hhhh---------------hcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 999998 4443 222 7899999999999865 667789999999999996
No 53
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1e-25 Score=201.27 Aligned_cols=259 Identities=25% Similarity=0.342 Sum_probs=189.5
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.+. .++. +. .+++|++|++++|.+++ + +.+..+++|++|++++|.+.+ ++. +..+++|++|+++
T Consensus 68 L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 68 LEYLNLNGNQIT-DISP-LS-NLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLG 140 (347)
T ss_dssp CCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECT
T ss_pred ccEEEccCCccc-cchh-hh-cCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECC
Confidence 688999999998 5665 55 89999999999999984 4 468899999999999999984 444 8899999999998
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.... .+..+..++ +|++|++++|.+....+ +..+++|++|++++|.+.+. +. +..+++|+.+
T Consensus 141 ~n~~~~-----------~~~~~~~l~-~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L 204 (347)
T 4fmz_A 141 ANHNLS-----------DLSPLSNMT-GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYF 204 (347)
T ss_dssp TCTTCC-----------CCGGGTTCT-TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEE
T ss_pred CCCCcc-----------cccchhhCC-CCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCcccee
Confidence 885422 112244444 66666666666553222 55566666666666665532 22 4555666666
Q ss_pred EccCCccccccCccccCccccchhhc-----------cCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCC
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLL-----------QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGS 229 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l-----------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 229 (327)
++++|.+++..+ +..++.|+.+.+ ..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 205 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~ 280 (347)
T 4fmz_A 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI 280 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred ecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC
Confidence 666665553222 444455555443 3467899999999999853 4678899999999999998874
Q ss_pred C-chhhhcccccccccC------ccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCC
Q 040487 230 L-LPHIQKLKQQSLRKN------SQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNY 287 (327)
Q Consensus 230 ~-~~~l~~L~~l~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~ 287 (327)
. ...+++|+.|++++| +..+..+++|+.|++++|++++..| ...+++|+.+++++|+
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 2 345678899999988 4567889999999999999997666 6689999999999995
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.8e-26 Score=216.65 Aligned_cols=255 Identities=21% Similarity=0.165 Sum_probs=196.5
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
.+.+++.+++++|.++...+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++ ..|..
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY----------LPPHV 118 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC----------CCTTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC----------CCHHH
Confidence 46889999999999996656667899999999999999998777899999999999998888754 34455
Q ss_pred hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCcccc
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRL 181 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 181 (327)
++.++ +|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. +..++.|
T Consensus 119 ~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L 194 (597)
T 3oja_B 119 FQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSL 194 (597)
T ss_dssp TTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTC
T ss_pred HcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhh
Confidence 67777 9999999999999655556789999999999999999888888999999999999999998542 3334444
Q ss_pred chhhcc-----------------------------CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCch
Q 040487 182 YSLLLQ-----------------------------GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLP 232 (327)
Q Consensus 182 ~~l~l~-----------------------------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 232 (327)
+.+.++ ..++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|.
T Consensus 195 ~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp SEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred hhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 444331 12356777777777764 35567788888888888888776665
Q ss_pred hh---hcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCCCCCCCC
Q 040487 233 HI---QKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNYALGSPP 293 (327)
Q Consensus 233 ~l---~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~l~~~p 293 (327)
.+ ++|+.|++++| +..+..+++|+.|++++|.+++..+....+++|+.|++++|. +..+|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK 340 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred HhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcC
Confidence 44 45677777777 455566788888888888887433233567788888888884 54443
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.6e-25 Score=205.69 Aligned_cols=252 Identities=21% Similarity=0.203 Sum_probs=159.0
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.+++ +| +. .+++|++|++++|.+++ ++ ++.+++|++|++++|.+++ ++ +..+++|++|+++
T Consensus 66 L~~L~Ls~n~l~~-~~--~~-~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 66 LTKLICTSNNITT-LD--LS-QNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp CSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCEEEccCCcCCe-Ec--cc-cCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 6889999999984 55 55 89999999999999985 33 8889999999999999985 44 8899999999999
Q ss_pred CCccccccC-----------CCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCch
Q 040487 81 QNYLMTKPL-----------AANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPK 149 (327)
Q Consensus 81 ~n~l~~~~l-----------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 149 (327)
+|.+++.++ +.+...+.+ .+..++ +|++|++++|.+++ ++ +..+++|++|++++|.+++.
T Consensus 136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--- 206 (457)
T 3bz5_A 136 RNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQT-QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--- 206 (457)
T ss_dssp TSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCT-TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---
T ss_pred CCccceeccccCCcCCEEECCCCCccccc--ccccCC-cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---
Confidence 998876421 122111111 133333 55555555555553 22 44555555555555555532
Q ss_pred hccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCcc-------CCcEEecC
Q 040487 150 TVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLE-------YILQIDLS 222 (327)
Q Consensus 150 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~-------~L~~L~ls 222 (327)
.+..+++|+.|++++|.+++ +| +. .+++|+.|++++|.+++..+..+..+. +|+.++++
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~-ip--~~-----------~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~ 272 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTE-ID--VT-----------PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLT 272 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSC-CC--CT-----------TCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred ccccCCCCCEEECcCCcccc-cC--cc-----------ccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECC
Confidence 24455555555555555553 33 33 345677777777777754433333332 34445555
Q ss_pred CCcCCCCCc-hhhhcccccccccCc--------------cccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCC
Q 040487 223 SNSLSGSLL-PHIQKLKQQSLRKNS--------------QVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNY 287 (327)
Q Consensus 223 ~n~l~~~~~-~~l~~L~~l~l~~~~--------------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~ 287 (327)
+|.+.+.+| ..+++|+.|++++|+ -.+..+++|+.|++++|++++ ++ ...+++|+.+++++|.
T Consensus 273 ~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~-l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD-VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC-CTTCTTCSEEECCSSC
T ss_pred CCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc-cccCCcCcEEECCCCC
Confidence 554444333 234566666666661 124566778888888888876 33 4567778888887773
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.5e-27 Score=211.32 Aligned_cols=245 Identities=21% Similarity=0.245 Sum_probs=187.7
Q ss_pred CeEEEccCCCCcccCCh-hhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQNQLSGHLPS-TMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 79 (327)
|++|++++|++.+ +|. .+. .+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 54 L~~L~l~~n~i~~-~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 54 VKSLDLSNNRITY-ISNSDLQ-RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp CCEEECTTSCCCE-ECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred CcEEECCCCcCcc-cCHHHhc-cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 6789999999984 555 555 9999999999999999877888999999999999999999655556999999999999
Q ss_pred CCCccccccCCCCCCcccCch--hhhhccccccEEEccCCc-ccccCCccccCCCCCcEEEccCCcccCCCchhccCCCC
Q 040487 80 VQNYLMTKPLAANPLRGFLPS--LVSNFSASLQEFNAYGCE-LKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQ 156 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 156 (327)
++|.++. +|. .+..++ +|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 132 ~~n~l~~-----------l~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 132 LGNPYKT-----------LGETSLFSHLT-KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp TTCCCSS-----------SCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCCCcc-----------cCchhhhccCC-CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 9998865 443 456666 99999999984 66555678889999999999999998877888999999
Q ss_pred CCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccc---cCccCCcEEecCCCcCCCC----
Q 040487 157 LQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSF---WNLEYILQIDLSSNSLSGS---- 229 (327)
Q Consensus 157 L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~ls~n~l~~~---- 229 (327)
|+.|++++|.++ .++..+. ..+++|+.|++++|.+++..+..+ .....++.++++++.+++.
T Consensus 200 L~~L~l~~n~l~-~~~~~~~----------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 200 VSHLILHMKQHI-LLLEIFV----------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp EEEEEEECSCST-THHHHHH----------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred CCeecCCCCccc-cchhhhh----------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 999999999886 4443321 123467788888888775443332 2345566666666666542
Q ss_pred Cch---hhhcccccccccC-----ccc-cCCCCCCCeEeCcCCcceeeCC
Q 040487 230 LLP---HIQKLKQQSLRKN-----SQV-IGALPHLKQLNLSYNRLEGEIP 270 (327)
Q Consensus 230 ~~~---~l~~L~~l~l~~~-----~~~-l~~~~~L~~L~l~~n~l~~~~~ 270 (327)
+|. .+++|+.|++++| |.. +..+++|++|++++|++.+..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 222 2345666666666 333 5789999999999999987654
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.7e-25 Score=205.35 Aligned_cols=258 Identities=24% Similarity=0.281 Sum_probs=129.8
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
++|++++|.+++ +|. ..++|++|++++|.+++ ++.. .++|++|++++|.+++ +| ++.++++|++|++++
T Consensus 94 ~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 94 ESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp SEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 455555555552 442 12455666666665552 2221 1577788888777774 56 477888888888888
Q ss_pred Cccccc----------cCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhc
Q 040487 82 NYLMTK----------PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTV 151 (327)
Q Consensus 82 n~l~~~----------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 151 (327)
|++++. +++++.+.+ +| .+..++ +|++|++++|.+.+ +|.. .++|++|++++|.+. .+| .+
T Consensus 163 N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~ 233 (454)
T 1jl5_A 163 NSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-EL 233 (454)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CC
T ss_pred CcCcccCCCcccccEEECcCCcCCc-Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-cc
Confidence 776552 334444444 33 345554 66666666665553 2322 135556666666555 344 25
Q ss_pred cCCCCCCEEEccCCccccccCccccCccccchhhccC---------CCCCCEEEcCCCcccc--cCCcccc---------
Q 040487 152 GGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQG---------LVSLRELYLDSNKLSS--SIPSSFW--------- 211 (327)
Q Consensus 152 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~---------~~~L~~L~l~~n~l~~--~~~~~l~--------- 211 (327)
..+++|+.|++++|.++ .+|..+ +.|+.+.++. .++|+.|++++|.+++ ..|..+.
T Consensus 234 ~~l~~L~~L~l~~N~l~-~l~~~~---~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp TTCTTCCEEECCSSCCS-SCCSCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred CCCCCCCEEECCCCcCC-cccccc---cccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 56666666666666665 333322 3344443321 2345555555555553 1111111
Q ss_pred ----Cc-cCCcEEecCCCcCCCCCchhhhcccccccccC-----ccccCCCCCCCeEeCcCCccee--eCCCC-CCC---
Q 040487 212 ----NL-EYILQIDLSSNSLSGSLLPHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEG--EIPIK-GPF--- 275 (327)
Q Consensus 212 ----~l-~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~--~~~~~-~~~--- 275 (327)
.+ ++|+.|++++|.+++ +|..+++|+.|++++| |. .+++|+.|++++|++++ .+|.. ..+
T Consensus 310 ~~i~~~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n 385 (454)
T 1jl5_A 310 RSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMN 385 (454)
T ss_dssp SEECCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred CcccCCcCcCCEEECCCCcccc-ccccCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhc
Confidence 11 356666666666654 4444556666666655 22 34566666666666665 33332 222
Q ss_pred ----------CCcceecccCCC
Q 040487 276 ----------RNFSTQSCFGNY 287 (327)
Q Consensus 276 ----------~~L~~l~l~~n~ 287 (327)
++|+.+++++|+
T Consensus 386 ~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 386 SHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp C---------------------
T ss_pred ccccccccccCcCCEEECCCCc
Confidence 556666666664
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=4.8e-26 Score=200.97 Aligned_cols=251 Identities=21% Similarity=0.134 Sum_probs=172.4
Q ss_pred EccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCcc
Q 040487 5 NLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYL 84 (327)
Q Consensus 5 ~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 84 (327)
+++.+.+. ..+..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 16 ~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 16 KVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp SCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 34444444 3444555567789999999998887666788888999999999998875443 88889999999888887
Q ss_pred ccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccC
Q 040487 85 MTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFG 164 (327)
Q Consensus 85 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 164 (327)
++. + ..+ +|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 93 ~~l-----------~----~~~-~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 93 QEL-----------L----VGP-SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp EEE-----------E----ECT-TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred ccc-----------c----CCC-CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence 652 2 112 788888888887754332 356788888888888766666777788888888888
Q ss_pred CccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCch--hhhccccccc
Q 040487 165 NNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLP--HIQKLKQQSL 242 (327)
Q Consensus 165 n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~--~l~~L~~l~l 242 (327)
|.+++..+..+.. .+++|++|++++|.+++. +. ...+++|+.|++++|.+++..+. .+++|+.|++
T Consensus 154 N~l~~~~~~~~~~----------~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 154 NEIDTVNFAELAA----------SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp SCCCEEEGGGGGG----------GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred CCCCcccHHHHhh----------ccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEEC
Confidence 8887554444421 134677777777777744 22 22467777777777777654332 2345566666
Q ss_pred ccC-----ccccCCCCCCCeEeCcCCcce-eeCCCC-CCCCCcceecccCCCCC
Q 040487 243 RKN-----SQVIGALPHLKQLNLSYNRLE-GEIPIK-GPFRNFSTQSCFGNYAL 289 (327)
Q Consensus 243 ~~~-----~~~l~~~~~L~~L~l~~n~l~-~~~~~~-~~~~~L~~l~l~~n~~l 289 (327)
++| |..+..+++|+.|++++|++. +.++.. ..++.|+.+++.+|+.+
T Consensus 222 ~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp TTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 665 455677788888888888887 333322 45677888888877655
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.1e-24 Score=188.47 Aligned_cols=228 Identities=23% Similarity=0.247 Sum_probs=181.9
Q ss_pred EEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCc
Q 040487 4 INLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNY 83 (327)
Q Consensus 4 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 83 (327)
.+-.+.++. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344555565 6887664 679999999999997777789999999999999999987777789999999999998888
Q ss_pred cccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCC-CchhccCCCCCCEEEc
Q 040487 84 LMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGT-IPKTVGGLQQLQGLDL 162 (327)
Q Consensus 84 l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l 162 (327)
++. ..+..+..++ +|++|++++|.+....+..+..+++|++|++++|.+.+. +|..+..+++|+.|++
T Consensus 88 l~~----------~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 88 IQS----------LALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CCE----------ECTTTTTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCc----------cChhhhcCCc-cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 754 2345667776 999999999999876666788999999999999999853 5888999999999999
Q ss_pred cCCccccccCccccCccccchhhccCCCCCC-EEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccc
Q 040487 163 FGNNLQGSIPYDLCNLKRLYSLLLQGLVSLR-ELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQS 241 (327)
Q Consensus 163 ~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~ 241 (327)
++|.+++..+..+..+..|+ .+. +|++++|.+++..+..+. ..+|+.|++++|.+++..+
T Consensus 157 s~N~l~~~~~~~~~~l~~L~--------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~---------- 217 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMP--------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPD---------- 217 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCT--------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCT----------
T ss_pred CCCCCCcCCHHHhhhhhhcc--------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCH----------
Confidence 99999865555665554322 233 899999999865555444 4589999999999986544
Q ss_pred cccCccccCCCCCCCeEeCcCCcceeeCC
Q 040487 242 LRKNSQVIGALPHLKQLNLSYNRLEGEIP 270 (327)
Q Consensus 242 l~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 270 (327)
..+..+++|+.|++++|++.+..+
T Consensus 218 -----~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 218 -----GIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp -----TTTTTCCSCCEEECCSSCBCCCTT
T ss_pred -----hHhcccccccEEEccCCcccccCC
Confidence 334567899999999999987654
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2.4e-24 Score=206.90 Aligned_cols=163 Identities=23% Similarity=0.224 Sum_probs=110.5
Q ss_pred ccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccC-ccccCccccchhhc-------------cCCCCC
Q 040487 127 IGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIP-YDLCNLKRLYSLLL-------------QGLVSL 192 (327)
Q Consensus 127 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~l~l-------------~~~~~L 192 (327)
+..+.+|+.+++..+.... .+..+..+++|+.+++..+......+ ..+..+..++.+.+ ..++.+
T Consensus 393 ~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp HHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 3445566777766665542 33344555666666665554442222 22333333333332 335678
Q ss_pred CEEEcCCCccc-ccCCccccCccCCcEEecCCCcCCCCCchhh---hcccccccccC------ccccCCCCCCCeEeCcC
Q 040487 193 RELYLDSNKLS-SSIPSSFWNLEYILQIDLSSNSLSGSLLPHI---QKLKQQSLRKN------SQVIGALPHLKQLNLSY 262 (327)
Q Consensus 193 ~~L~l~~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l---~~L~~l~l~~~------~~~l~~~~~L~~L~l~~ 262 (327)
+.|++++|.+. +..|..+..+++|+.|++++|.+++..|..+ ++|+.|+|++| +..+..+++|+.|++++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 88999888644 3567778888899999999998887666544 56778888887 56788999999999999
Q ss_pred CcceeeCCCC-CCC-CCcceecccCCCCCC
Q 040487 263 NRLEGEIPIK-GPF-RNFSTQSCFGNYALG 290 (327)
Q Consensus 263 n~l~~~~~~~-~~~-~~L~~l~l~~n~~l~ 290 (327)
|++++..|.. ..+ ++|+.+++++||..+
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999877655 445 689999999998653
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-26 Score=203.25 Aligned_cols=235 Identities=22% Similarity=0.171 Sum_probs=178.6
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.+.+..|..+. .+++|++|++++|.+++..+ +..+++|++|++++|.+++. + ..++|++|+++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~ 107 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred CCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEECC
Confidence 67999999999954455666 99999999999999985543 88999999999999999843 3 34899999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhc-cCCCCCCE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTV-GGLQQLQG 159 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~ 159 (327)
+|.+++.. +. .++ +|++|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.
T Consensus 108 ~n~l~~~~----------~~---~~~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 108 NNNISRVS----------CS---RGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (317)
T ss_dssp SSCCSEEE----------EC---CCS-SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCccCCcC----------cc---ccC-CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence 99886521 11 133 78889999988887666677888889999999888886656655 36788999
Q ss_pred EEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCch---hhhc
Q 040487 160 LDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLP---HIQK 236 (327)
Q Consensus 160 L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~---~l~~ 236 (327)
|++++|.+++. +.. . .+++|++|++++|.+++ +|..+..+++|+.|++++|.+++ +|. .+++
T Consensus 174 L~L~~N~l~~~-~~~-~-----------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~ 238 (317)
T 3o53_A 174 LNLQYNFIYDV-KGQ-V-----------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (317)
T ss_dssp EECTTSCCCEE-ECC-C-----------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred EECCCCcCccc-ccc-c-----------ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCC
Confidence 99998888733 211 1 14568888888888884 45557788888888888888874 333 3456
Q ss_pred ccccccccC-------ccccCCCCCCCeEeCcCC-cceeeCCCC
Q 040487 237 LKQQSLRKN-------SQVIGALPHLKQLNLSYN-RLEGEIPIK 272 (327)
Q Consensus 237 L~~l~l~~~-------~~~l~~~~~L~~L~l~~n-~l~~~~~~~ 272 (327)
|+.+++++| +..+..+++|+.++++++ .+.+..+..
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 777888877 456778899999999955 566655554
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6.9e-25 Score=204.46 Aligned_cols=219 Identities=23% Similarity=0.174 Sum_probs=156.8
Q ss_pred cCChhhhcCC----CCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccC
Q 040487 14 HLPSTMGCTL----PNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPL 89 (327)
Q Consensus 14 ~lp~~~~~~l----~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l 89 (327)
.+|..+. .+ ++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++
T Consensus 21 ~l~~~l~-~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--- 94 (487)
T 3oja_A 21 SLKQALA-SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE--- 94 (487)
T ss_dssp THHHHHH-TTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE---
T ss_pred hhHHHHH-HhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC---
Confidence 3555555 33 379999999999997777888999999999999999886554 8889999999999998865
Q ss_pred CCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCcccc
Q 040487 90 AANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQG 169 (327)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 169 (327)
++. .+ +|++|++++|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 95 --------l~~----~~-~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 95 --------LLV----GP-SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp --------EEE----CT-TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred --------CCC----CC-CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 221 13 888999999888855443 35788899999998887777778888889999999988887
Q ss_pred ccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCch--hhhcccccccccC--
Q 040487 170 SIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLP--HIQKLKQQSLRKN-- 245 (327)
Q Consensus 170 ~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~--~l~~L~~l~l~~~-- 245 (327)
..|..+.. .+++|+.|++++|.+++..+ ...+++|+.|++++|.+++..+. .+++|+.|++++|
T Consensus 159 ~~~~~l~~----------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 159 VNFAELAA----------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp EEGGGGGG----------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred cChHHHhh----------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcC
Confidence 66665541 13468888888888875532 23578888888888888765443 1233444444444
Q ss_pred ---ccccCCCCCCCeEeCcCCcce
Q 040487 246 ---SQVIGALPHLKQLNLSYNRLE 266 (327)
Q Consensus 246 ---~~~l~~~~~L~~L~l~~n~l~ 266 (327)
|..+..+++|+.|++++|++.
T Consensus 227 ~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 227 VLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEECTTCCCCTTCCEEECTTCCBC
T ss_pred cccchhhccCCCCCEEEcCCCCCc
Confidence 344445555555555555554
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=4e-25 Score=204.23 Aligned_cols=220 Identities=22% Similarity=0.211 Sum_probs=120.6
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCC-------------CCEEEccCccccccCccc
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASK-------------LITLNLGYNYFSGLIPNT 67 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~-------------L~~L~L~~n~l~~~~~~~ 67 (327)
|++|++++|.+ +.+|.++. .+++|++|++++|.+++.+|..++.+.+ +++|++++|.+++ +|..
T Consensus 13 L~~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred chhhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 57899999999 59999998 9999999999999999889988887765 4899999998874 4542
Q ss_pred ccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCC
Q 040487 68 FGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTI 147 (327)
Q Consensus 68 l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 147 (327)
.++|++|++++|.+++ +|..+ .+|++|++++|.+.+ ++.. .++|++|++++|.+.+ +
T Consensus 90 ---~~~L~~L~l~~n~l~~-----------lp~~~----~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-----------LPELP----QSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-----------CCCCC----TTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-C
T ss_pred ---cCCCCEEEccCCcCCc-----------ccccc----CCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-C
Confidence 3688999988888765 22211 267777777776653 2211 1567777777776664 4
Q ss_pred chhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCC
Q 040487 148 PKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLS 227 (327)
Q Consensus 148 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 227 (327)
| .+..+++|+.|++++|.++ .+|..+. +|++|++++|.+++ +| .+..+++|+.|++++|.++
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~-~lp~~~~--------------~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLK-KLPDLPP--------------SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCS-CCCCCCT--------------TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred c-ccCCCCCCCEEECCCCcCc-ccCCCcc--------------cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 4 4666777777777777666 3443221 35555555555543 33 3445555555555555554
Q ss_pred CCCchhhhcccccccccC-----ccccCCCCCCCeEeCcCCcce
Q 040487 228 GSLLPHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLE 266 (327)
Q Consensus 228 ~~~~~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~ 266 (327)
+ +|...++|+.|++++| | .+..+++|++|++++|+++
T Consensus 209 ~-l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 209 K-LPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp S-CCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred c-CCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC
Confidence 3 2223334455554444 2 2444455555555555544
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.2e-25 Score=206.74 Aligned_cols=224 Identities=22% Similarity=0.167 Sum_probs=177.8
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.+.+..|..+. .+++|++|++++|.+++..+ +..+++|++|++++|.+++. | ..++|++|+++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~ 107 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred ccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECc
Confidence 67899999999965556676 99999999999999986554 88999999999999999843 3 23899999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhcc-CCCCCCE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVG-GLQQLQG 159 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~ 159 (327)
+|.++..+ +. .++ +|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+. .+++|+.
T Consensus 108 ~N~l~~~~----------~~---~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 108 NNNISRVS----------CS---RGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp SSCCCCEE----------EC---CCS-SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCCCCC----------cc---ccC-CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 99886621 11 133 899999999999887787888899999999999999877777765 6899999
Q ss_pred EEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCch---hhhc
Q 040487 160 LDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLP---HIQK 236 (327)
Q Consensus 160 L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~---~l~~ 236 (327)
|++++|.+++. +. .. .+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++ +|. .+++
T Consensus 174 L~Ls~N~l~~~-~~-~~-----------~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 174 LNLQYNFIYDV-KG-QV-----------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp EECTTSCCCEE-EC-CC-----------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred EecCCCccccc-cc-cc-----------cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence 99999998844 21 11 24578999999999985 44458888999999999999886 333 3466
Q ss_pred ccccccccC-------ccccCCCCCCCeEeCc
Q 040487 237 LKQQSLRKN-------SQVIGALPHLKQLNLS 261 (327)
Q Consensus 237 L~~l~l~~~-------~~~l~~~~~L~~L~l~ 261 (327)
|+.+++++| |..+..++.|+.++++
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 788888887 3557778888888876
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=2.4e-26 Score=213.02 Aligned_cols=285 Identities=19% Similarity=0.157 Sum_probs=187.7
Q ss_pred CeEEEccCCCCcc----cCChhhhcCCCCCCEEEcccCcccccCCcccc-cCC----CCCEEEccCccccc----cCccc
Q 040487 1 MIVINLIQNQLSG----HLPSTMGCTLPNLERLTLSHNKLSGTIPNSII-NAS----KLITLNLGYNYFSG----LIPNT 67 (327)
Q Consensus 1 L~~L~l~~~~~~~----~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~----~L~~L~L~~n~l~~----~~~~~ 67 (327)
|++|++++|++.+ .++..+. .+++|++|++++|.+++..+..+. .++ +|++|++++|.++. .++..
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 5678888887763 2444555 678888888888877654333332 343 58888888887763 34667
Q ss_pred ccCCCCCcEEeCCCCcccc-------------------ccCCCCCCccc----CchhhhhccccccEEEccCCcccccCC
Q 040487 68 FGNLRFLNWLSPVQNYLMT-------------------KPLAANPLRGF----LPSLVSNFSASLQEFNAYGCELKGSIP 124 (327)
Q Consensus 68 l~~l~~L~~L~l~~n~l~~-------------------~~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~ 124 (327)
+..+++|++|++++|.++. .+++++.+... ++..+..++ +|++|++++|.+....+
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-DFKELTVSNNDINEAGV 187 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT-TCCEEECCSSBCHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC-CCCEEECcCCCcchHHH
Confidence 7777888888888776542 14556666553 345555556 88888888888764333
Q ss_pred cccc-----CCCCCcEEEccCCcccCC----CchhccCCCCCCEEEccCCccccccC-----ccccCccccchhhcc---
Q 040487 125 QEIG-----NLSGLIVLNLFNNDLIGT----IPKTVGGLQQLQGLDLFGNNLQGSIP-----YDLCNLKRLYSLLLQ--- 187 (327)
Q Consensus 125 ~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~-----~~l~~~~~L~~l~l~--- 187 (327)
..+. ..++|++|++++|.+.+. ++..+..+++|+.|++++|.+++... ..+..++.|+.+.++
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 3332 255788888888887753 35556677888888888887764321 112235566666552
Q ss_pred --------------CCCCCCEEEcCCCcccccCCccccC-----ccCCcEEecCCCcCCCCC----chh---hhcccccc
Q 040487 188 --------------GLVSLRELYLDSNKLSSSIPSSFWN-----LEYILQIDLSSNSLSGSL----LPH---IQKLKQQS 241 (327)
Q Consensus 188 --------------~~~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~ls~n~l~~~~----~~~---l~~L~~l~ 241 (327)
.+++|++|++++|.+++..+..+.. .++|+.|++++|.+++.. +.. .++|+.|+
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 2678888999988887654443332 268889999999887653 222 25678888
Q ss_pred cccC------c----cccCC-CCCCCeEeCcCCccee----eCCCC-CCCCCcceecccCCC
Q 040487 242 LRKN------S----QVIGA-LPHLKQLNLSYNRLEG----EIPIK-GPFRNFSTQSCFGNY 287 (327)
Q Consensus 242 l~~~------~----~~l~~-~~~L~~L~l~~n~l~~----~~~~~-~~~~~L~~l~l~~n~ 287 (327)
+++| + ..+.. .++|++|++++|++++ .++.. ..+++|+.+++++|+
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 8887 1 22222 6789999999998885 34433 457889999999995
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.6e-24 Score=185.19 Aligned_cols=207 Identities=25% Similarity=0.235 Sum_probs=172.4
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|++.+..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCCEECTTTTT-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCcccccCHhHhc-cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 57899999999854444665 89999999999999997777789999999999999999997777889999999999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCccccc-CCccccCCCCCcEEEccCCcccCCCchhccCCCCCC-
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGS-IPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQ- 158 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~- 158 (327)
+|.++.. .+..+..++ +|++|++++|.+... +|..+..+++|++|++++|.+++..+..+..+++++
T Consensus 109 ~n~l~~~----------~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 109 ETNLASL----------ENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TSCCCCS----------TTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCcccc----------CchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 9987651 222456666 999999999999863 588899999999999999999977777777666666
Q ss_pred ---EEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 159 ---GLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 159 ---~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
.|++++|.+++..+..+.. .+|+.|++++|.+++..+..+..+++|+.|++++|.++...+
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKE------------IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCS------------CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cceeeecCCCcccccCccccCC------------CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 8999999998444333322 258999999999997666677899999999999999987553
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=1.7e-26 Score=213.95 Aligned_cols=287 Identities=18% Similarity=0.134 Sum_probs=191.6
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccc----cCCcccccCCCCCEEEccCccccccCcccc-cCCC---
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSG----TIPNSIINASKLITLNLGYNYFSGLIPNTF-GNLR--- 72 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~--- 72 (327)
|++|++++|++.+.....++..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 46788888887754444434478888888888888773 245566777888888888888775444332 2344
Q ss_pred -CCcEEeCCCCccccc------------------cCCCCCCcccCchhhhhc----cccccEEEccCCccccc----CCc
Q 040487 73 -FLNWLSPVQNYLMTK------------------PLAANPLRGFLPSLVSNF----SASLQEFNAYGCELKGS----IPQ 125 (327)
Q Consensus 73 -~L~~L~l~~n~l~~~------------------~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~ 125 (327)
+|++|++++|.++.. +++++.+....+..+... .++|++|++++|.++.. ++.
T Consensus 85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 688888888877631 556666654433333321 12588888888877643 244
Q ss_pred cccCCCCCcEEEccCCcccCCCchhcc-----CCCCCCEEEccCCccccc----cCccccCccccchhhcc---------
Q 040487 126 EIGNLSGLIVLNLFNNDLIGTIPKTVG-----GLQQLQGLDLFGNNLQGS----IPYDLCNLKRLYSLLLQ--------- 187 (327)
Q Consensus 126 ~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~l~l~--------- 187 (327)
.+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++. ++..+..++.|+.+.++
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 556678888888888887644333332 356888888888888753 45556666777777662
Q ss_pred ---------CCCCCCEEEcCCCccccc----CCccccCccCCcEEecCCCcCCCCCchhh--------hcccccccccC-
Q 040487 188 ---------GLVSLRELYLDSNKLSSS----IPSSFWNLEYILQIDLSSNSLSGSLLPHI--------QKLKQQSLRKN- 245 (327)
Q Consensus 188 ---------~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l--------~~L~~l~l~~~- 245 (327)
.+++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+ ++|+.|++++|
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 256788888888888753 45566667888888888888765443322 36788888777
Q ss_pred ---------ccccCCCCCCCeEeCcCCcceeeCCCC------CCCCCcceecccCCC
Q 040487 246 ---------SQVIGALPHLKQLNLSYNRLEGEIPIK------GPFRNFSTQSCFGNY 287 (327)
Q Consensus 246 ---------~~~l~~~~~L~~L~l~~n~l~~~~~~~------~~~~~L~~l~l~~n~ 287 (327)
+..+..+++|++|++++|++++..+.. ...++|+.+++++|.
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 234456688888888888877542221 125678888888884
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.5e-23 Score=178.44 Aligned_cols=203 Identities=27% Similarity=0.257 Sum_probs=99.1
Q ss_pred CCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh-hhh
Q 040487 26 LERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL-VSN 104 (327)
Q Consensus 26 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~-~~~ 104 (327)
.++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++. ++.. +..
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------i~~~~~~~ 83 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-----------LPAGIFKE 83 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-----------CCTTTTSS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-----------eChhhhcC
Confidence 445555555555 3343322 345555555555553333345555555555555554432 2221 223
Q ss_pred ccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchh
Q 040487 105 FSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSL 184 (327)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l 184 (327)
++ +|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..
T Consensus 84 l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------- 155 (270)
T 2o6q_A 84 LK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK------- 155 (270)
T ss_dssp CT-TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------
T ss_pred CC-CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC-------
Confidence 33 5555555555555433344455555555555555555444444555555555555555555222222322
Q ss_pred hccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCc
Q 040487 185 LLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNR 264 (327)
Q Consensus 185 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~ 264 (327)
+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|+
T Consensus 156 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 156 ----LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG---------------AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ----CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------------TTTTCTTCCEEECCSSC
T ss_pred ----CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH---------------HhccccCCCEEEecCCC
Confidence 23455555555555544444455555556666655555543321 22344555555555555
Q ss_pred ceeeC
Q 040487 265 LEGEI 269 (327)
Q Consensus 265 l~~~~ 269 (327)
+.+..
T Consensus 217 ~~c~c 221 (270)
T 2o6q_A 217 WDCTC 221 (270)
T ss_dssp BCCSS
T ss_pred eeCCC
Confidence 54443
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.1e-23 Score=197.73 Aligned_cols=243 Identities=25% Similarity=0.277 Sum_probs=161.4
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 467899999998 7888764 78999999999988 5665 5788999999999987 4565 67899999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.++. +|. .+ .+|+.|++++|.++. +|.. +++|++|++++|.+.+ +|. .+++|+.|
T Consensus 110 ~N~l~~-----------l~~---~l-~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L 166 (622)
T 3g06_A 110 SNPLTH-----------LPA---LP-SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKL 166 (622)
T ss_dssp SCCCCC-----------CCC---CC-TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred CCcCCC-----------CCC---CC-CCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEE
Confidence 888765 222 12 266666666666653 3332 3566666666666653 222 23455555
Q ss_pred EccCCccccccCccccCccccchhhcc---------CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQ---------GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~---------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
++++|.++ .+| ..+++|+.|.++ ..++|+.|++++|.++ .+|.. +++|+.|++++|.+++ +|
T Consensus 167 ~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp 237 (622)
T 3g06_A 167 WAYNNQLT-SLP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP 237 (622)
T ss_dssp ECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC
T ss_pred ECCCCCCC-CCc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC
Confidence 55555555 333 122333333331 1345777777777777 44432 4678888888888775 44
Q ss_pred hhhhcccccccccCc-ccc-CCCCCCCeEeCcCCcceeeCCCC-CCCCCcceecccCCCC
Q 040487 232 PHIQKLKQQSLRKNS-QVI-GALPHLKQLNLSYNRLEGEIPIK-GPFRNFSTQSCFGNYA 288 (327)
Q Consensus 232 ~~l~~L~~l~l~~~~-~~l-~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~l~l~~n~~ 288 (327)
..+++|+.|++++|. ..+ ..+++|+.|++++|+++ .+|.. ..+++|+.+++++|+.
T Consensus 238 ~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 666778888887771 111 15577888888888887 45543 6678888888888863
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.8e-24 Score=190.47 Aligned_cols=223 Identities=24% Similarity=0.253 Sum_probs=177.4
Q ss_pred eEEEccCCCCc-ccCChhhh------cCCCCCCEEEcccCcccccCCccc--ccCCCCCEEEccCccccccCcccccCC-
Q 040487 2 IVINLIQNQLS-GHLPSTMG------CTLPNLERLTLSHNKLSGTIPNSI--INASKLITLNLGYNYFSGLIPNTFGNL- 71 (327)
Q Consensus 2 ~~L~l~~~~~~-~~lp~~~~------~~l~~L~~L~l~~~~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l~~l- 71 (327)
++|++++|.+. ..+|..+. ..+++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 66 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~ 144 (312)
T 1wwl_A 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQ 144 (312)
T ss_dssp HHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH
T ss_pred hhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHH
Confidence 56788888884 45666542 158999999999999998888876 8999999999999999966 7777776
Q ss_pred ----CCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCccccc--CCccc--cCCCCCcEEEccCCcc
Q 040487 72 ----RFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGS--IPQEI--GNLSGLIVLNLFNNDL 143 (327)
Q Consensus 72 ----~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~n~~ 143 (327)
++|++|++++|.+++ ..+..+..++ +|++|++++|.+.+. .+..+ ..+++|++|++++|.+
T Consensus 145 ~~~~~~L~~L~L~~N~l~~----------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLN----------FSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp TTCCTTCCEEEEESCSCCC----------CCTTTCCCCS-SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred HhhcCCCcEEEeeCCCCcc----------chHHHhccCC-CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 999999998888754 3446677777 999999999997643 23333 7899999999999998
Q ss_pred cCC--C-chhccCCCCCCEEEccCCccccccCc-cccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEE
Q 040487 144 IGT--I-PKTVGGLQQLQGLDLFGNNLQGSIPY-DLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQI 219 (327)
Q Consensus 144 ~~~--~-~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 219 (327)
.+. . ...+..+++|+.|++++|.+++..|. .+.. +++|++|++++|.++ .+|..+. ++|+.|
T Consensus 214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----------l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L 279 (312)
T 1wwl_A 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW-----------PSQLNSLNLSFTGLK-QVPKGLP--AKLSVL 279 (312)
T ss_dssp CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC-----------CTTCCEEECTTSCCS-SCCSSCC--SEEEEE
T ss_pred cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh-----------cCCCCEEECCCCccC-hhhhhcc--CCceEE
Confidence 831 2 23456789999999999999865542 2222 357999999999999 7777665 899999
Q ss_pred ecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCccee
Q 040487 220 DLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEG 267 (327)
Q Consensus 220 ~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~ 267 (327)
++++|++++. |. +..+++|++|++++|++++
T Consensus 280 ~Ls~N~l~~~-p~----------------~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 280 DLSYNRLDRN-PS----------------PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ECCSSCCCSC-CC----------------TTTSCEEEEEECTTCTTTC
T ss_pred ECCCCCCCCC-hh----------------HhhCCCCCEEeccCCCCCC
Confidence 9999999875 32 3467899999999999875
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7.9e-23 Score=176.22 Aligned_cols=203 Identities=25% Similarity=0.285 Sum_probs=169.1
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
+.+++++++++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...+..|.++++|++|++++
T Consensus 19 ~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 19 NSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 56899999998 7887664 6899999999999966666899999999999999999865556678999999999999
Q ss_pred CccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEE
Q 040487 82 NYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 82 n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 161 (327)
|.++. ..+..+..++ +|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 95 n~l~~----------~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 95 NKLQA----------LPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp SCCCC----------CCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCc----------CCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 88765 1223455666 999999999999977777789999999999999999976666788999999999
Q ss_pred ccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC
Q 040487 162 LFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL 230 (327)
Q Consensus 162 l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 230 (327)
+++|.+++..+..+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 164 L~~n~l~~~~~~~~~~-----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDK-----------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCSSCCSCCCTTTTTT-----------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred ecCCcCcEeChhHhcc-----------CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 9999998544444544 447999999999999766667888999999999999987543
No 72
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=7.1e-25 Score=197.03 Aligned_cols=219 Identities=20% Similarity=0.224 Sum_probs=160.2
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCC----cccccCC-CCCEEEccCccccccCcccccCC-----C
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIP----NSIINAS-KLITLNLGYNYFSGLIPNTFGNL-----R 72 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~ 72 (327)
.+++++|.+++.+|..+. ..++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 468899999977776654 56669999999999996665 6778888 89999999999997777766665 9
Q ss_pred CCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCcc----ccC-CCCCcEEEccCCcccCCC
Q 040487 73 FLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQE----IGN-LSGLIVLNLFNNDLIGTI 147 (327)
Q Consensus 73 ~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~n~~~~~~ 147 (327)
+|++|++++|.++... ...+...+...+++|++|++++|.++...+.. +.. .++|++|++++|.+.+..
T Consensus 81 ~L~~L~Ls~n~l~~~~------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKS------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp TCCEEECCSSCGGGSC------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred CccEEECcCCcCChHH------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 9999999999875410 00112224444238999999999998654433 333 368999999999998544
Q ss_pred c----hhccCCC-CCCEEEccCCccccccCccccCccccchhhccCC-CCCCEEEcCCCccccc----CCccccC-ccCC
Q 040487 148 P----KTVGGLQ-QLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGL-VSLRELYLDSNKLSSS----IPSSFWN-LEYI 216 (327)
Q Consensus 148 ~----~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L 216 (327)
. ..+...+ +|+.|++++|.+++..+..+... +..+ ++|++|++++|.+++. ++..+.. .++|
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF-------LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH-------HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 3 3445555 99999999999986555444321 1223 3799999999999863 4444544 4589
Q ss_pred cEEecCCCcCCCCCchhhh
Q 040487 217 LQIDLSSNSLSGSLLPHIQ 235 (327)
Q Consensus 217 ~~L~ls~n~l~~~~~~~l~ 235 (327)
+.|++++|.+++..+..+.
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp CEEECCSSCCCCCCHHHHH
T ss_pred eEEECcCCCCCcHHHHHHH
Confidence 9999999999887664443
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=8.3e-23 Score=177.85 Aligned_cols=196 Identities=26% Similarity=0.251 Sum_probs=95.8
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
+++++++++++ .+|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+++. +. ...+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 13 LEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSH 86 (290)
T ss_dssp CEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCS
T ss_pred cEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCC
Confidence 44555555554 4554432 4555555555555544444555555555555555555422 22 14455555555555
Q ss_pred CccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEE
Q 040487 82 NYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 82 n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 161 (327)
|.++. +|..+..++ +|++|++++|.++...+..|..+++|++|++++|.+.+..+..|..+++|+.|+
T Consensus 87 N~l~~-----------l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 87 NQLQS-----------LPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp SCCSS-----------CCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCc-----------CchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 55433 333334444 555555555555544344455555555555555555544444444555555555
Q ss_pred ccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCC
Q 040487 162 LFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLS 227 (327)
Q Consensus 162 l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 227 (327)
+++|.++...+..+.. +++|+.|++++|.++ .+|..+...++|+.+++++|.+.
T Consensus 155 L~~N~l~~l~~~~~~~-----------l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 155 LANNNLTELPAGLLNG-----------LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTSCCSCCCTTTTTT-----------CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCcCCccCHHHhcC-----------cCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 5555554211112222 224555555555555 44444444455555555555543
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.4e-22 Score=176.47 Aligned_cols=203 Identities=22% Similarity=0.145 Sum_probs=168.1
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
.++++++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++.. +..
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------~~~ 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-----------QVD 73 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-----------ECC
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-----------cCC
Confidence 7899999999999999 6676553 6899999999999977788899999999999999998762 221
Q ss_pred hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCcccc
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRL 181 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 181 (327)
..++ +|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..
T Consensus 74 -~~l~-~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---- 146 (290)
T 1p9a_G 74 -GTLP-VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP---- 146 (290)
T ss_dssp -SCCT-TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT----
T ss_pred -CCCC-cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc----
Confidence 3444 8999999999998 67878899999999999999999777788999999999999999998544444444
Q ss_pred chhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCc
Q 040487 182 YSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLS 261 (327)
Q Consensus 182 ~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~ 261 (327)
+++|+.|++++|.+++..+..+..+++|+.|++++|.++. +|. .+...++|+.++++
T Consensus 147 -------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~---------------~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 147 -------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPK---------------GFFGSHLLPFAFLH 203 (290)
T ss_dssp -------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCT---------------TTTTTCCCSEEECC
T ss_pred -------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cCh---------------hhcccccCCeEEeC
Confidence 4479999999999996666667889999999999999984 332 23345688888998
Q ss_pred CCcceee
Q 040487 262 YNRLEGE 268 (327)
Q Consensus 262 ~n~l~~~ 268 (327)
+|++.+.
T Consensus 204 ~Np~~C~ 210 (290)
T 1p9a_G 204 GNPWLCN 210 (290)
T ss_dssp SCCBCCS
T ss_pred CCCccCc
Confidence 8887653
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.8e-23 Score=177.27 Aligned_cols=222 Identities=23% Similarity=0.261 Sum_probs=178.2
Q ss_pred EccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCcc
Q 040487 5 NLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYL 84 (327)
Q Consensus 5 ~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 84 (327)
++.++.+.+.. ... .+++|+.|++++|.++ .+ ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+
T Consensus 25 ~l~~~~~~~~~--~~~-~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 25 NLKKKSVTDAV--TQN-ELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHTCSCTTSEE--CHH-HHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCC
T ss_pred HhcCccccccc--ccc-cccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCcc
Confidence 34455554332 233 6799999999999988 33 358889999999999999985 3 4788999999999998887
Q ss_pred ccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccC
Q 040487 85 MTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFG 164 (327)
Q Consensus 85 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 164 (327)
++ ..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 98 ~~----------~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 98 QS----------LPNGVFDKLT-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CC----------CCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred Cc----------cChhHhcCCc-CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 54 2334456676 999999999999977777789999999999999999977777788999999999999
Q ss_pred CccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhccccccccc
Q 040487 165 NNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRK 244 (327)
Q Consensus 165 n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~ 244 (327)
|.+++..+..+.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 167 n~l~~~~~~~~~~-----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------------- 220 (272)
T 3rfs_A 167 NQLQSLPEGVFDK-----------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------------- 220 (272)
T ss_dssp SCCCCCCTTTTTT-----------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC---------------
T ss_pred CCcCccCHHHhcC-----------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc---------------
Confidence 9998555444444 45799999999999987777789999999999999988754
Q ss_pred CccccCCCCCCCeEeCcCCcceeeCCCC-CCCCC
Q 040487 245 NSQVIGALPHLKQLNLSYNRLEGEIPIK-GPFRN 277 (327)
Q Consensus 245 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~ 277 (327)
+++|+.+++..|.++|.+|.. +.++.
T Consensus 221 -------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 221 -------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 357888889999998888876 33433
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=8.1e-23 Score=176.32 Aligned_cols=223 Identities=20% Similarity=0.145 Sum_probs=178.3
Q ss_pred CCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhh
Q 040487 24 PNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVS 103 (327)
Q Consensus 24 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~ 103 (327)
.++..+++.++.+.+. ..+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++ + ..+.
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-----------~-~~l~ 82 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-----------I-SALK 82 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-----------C-GGGT
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-----------c-hhhc
Confidence 3445566666666633 345678999999999999873 3 458889999999999998754 2 2566
Q ss_pred hccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccch
Q 040487 104 NFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYS 183 (327)
Q Consensus 104 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 183 (327)
.++ +|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..
T Consensus 83 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------ 155 (272)
T 3rfs_A 83 ELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK------ 155 (272)
T ss_dssp TCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred CCC-CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc------
Confidence 676 9999999999999777777899999999999999999777777889999999999999998544444444
Q ss_pred hhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCC
Q 040487 184 LLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYN 263 (327)
Q Consensus 184 l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n 263 (327)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|
T Consensus 156 -----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 156 -----LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG---------------VFDRLTSLQYIWLHDN 215 (272)
T ss_dssp -----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------------TTTTCTTCCEEECCSS
T ss_pred -----CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH---------------HHhCCcCCCEEEccCC
Confidence 45799999999999977777788999999999999999876653 3456789999999999
Q ss_pred cceeeCCCCCCCCCcceecccCCCCCCCCCCC
Q 040487 264 RLEGEIPIKGPFRNFSTQSCFGNYALGSPPIL 295 (327)
Q Consensus 264 ~l~~~~~~~~~~~~L~~l~l~~n~~l~~~p~~ 295 (327)
++.+.+| .++.+++.+|...|.+|..
T Consensus 216 ~~~~~~~------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 216 PWDCTCP------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CBCCCTT------TTHHHHHHHHHTGGGBBCT
T ss_pred CccccCc------HHHHHHHHHHhCCCcccCc
Confidence 9998875 4677777777544777654
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=3.1e-22 Score=190.87 Aligned_cols=226 Identities=28% Similarity=0.307 Sum_probs=174.9
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+.|+++
T Consensus 63 L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 63 ITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp CSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 678999999998 6776 4789999999999998 5665 67899999999999984 554 67889999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.++. +|.. ++ +|++|++++|.+++ +|. ...+|+.|++++|.+.. +| ..+++|+.|
T Consensus 130 ~N~l~~-----------lp~~---l~-~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L 186 (622)
T 3g06_A 130 GNQLTS-----------LPVL---PP-GLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQEL 186 (622)
T ss_dssp SSCCSC-----------CCCC---CT-TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEE
T ss_pred CCCCCc-----------CCCC---CC-CCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEE
Confidence 998866 3322 13 78888888888773 343 24577888888887774 44 346778888
Q ss_pred EccCCccccccCccccCccccchhhcc---------CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQ---------GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~---------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
++++|.++ .+|..+ ++|+.|.+. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|
T Consensus 187 ~Ls~N~l~-~l~~~~---~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp 257 (622)
T 3g06_A 187 SVSDNQLA-SLPTLP---SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LP 257 (622)
T ss_dssp ECCSSCCS-CCCCCC---TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC
T ss_pred ECCCCCCC-CCCCcc---chhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CC
Confidence 88888877 455433 344554442 23689999999999985 55 456899999999999985 45
Q ss_pred hhhhcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCC
Q 040487 232 PHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPI 271 (327)
Q Consensus 232 ~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~ 271 (327)
..+++|+.|++++| |..+..+++|+.|++++|++++..|.
T Consensus 258 ~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 258 MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 57888999999998 77889999999999999999976554
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.2e-24 Score=191.37 Aligned_cols=246 Identities=17% Similarity=0.158 Sum_probs=181.1
Q ss_pred CeEEEccCCCCcccCC----hhhhcCCC-CCCEEEcccCcccccCCcccccC-----CCCCEEEccCccccccCccc---
Q 040487 1 MIVINLIQNQLSGHLP----STMGCTLP-NLERLTLSHNKLSGTIPNSIINA-----SKLITLNLGYNYFSGLIPNT--- 67 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp----~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~--- 67 (327)
|++|++++|.+.+..+ ..+. .++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 6899999999985444 4555 788 89999999999997777777765 99999999999998766654
Q ss_pred -ccCC-CCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCccccc----CCccccCCC-CCcEEEccC
Q 040487 68 -FGNL-RFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGS----IPQEIGNLS-GLIVLNLFN 140 (327)
Q Consensus 68 -l~~l-~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~-~L~~L~l~~ 140 (327)
+..+ ++|++|++++|.++... ...+...+..++.+|++|++++|.++.. ++..+...+ +|++|++++
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKS------SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSC------HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHhCCCCccEEECcCCcCCcHH------HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 4444 89999999999886521 0011122333234899999999999853 334445555 999999999
Q ss_pred CcccCCCchhc----cCC-CCCCEEEccCCccccccCccccCccccchhhcc-CCCCCCEEEcCCCcccccCC----ccc
Q 040487 141 NDLIGTIPKTV----GGL-QQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQ-GLVSLRELYLDSNKLSSSIP----SSF 210 (327)
Q Consensus 141 n~~~~~~~~~~----~~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~-~~~~L~~L~l~~n~l~~~~~----~~l 210 (327)
|.+++..+..+ ... ++|+.|++++|.+++.....+.. .+. ..++|++|++++|.+++..+ ..+
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-------HHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-------HHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 99987666443 445 59999999999998532222211 011 13479999999999987544 344
Q ss_pred cCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCcceee
Q 040487 211 WNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEGE 268 (327)
Q Consensus 211 ~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~ 268 (327)
..+++|+.|++++|.+.+..+..+..+. ..+..+++|+.||+++|++.+.
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~--------~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALG--------AAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHH--------TTSTTCCEEEEECTTSCBCCGG
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHH--------HHhccCCceEEEecCCCcCCCc
Confidence 6779999999999997665555444333 4566788999999999998865
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.6e-23 Score=186.13 Aligned_cols=250 Identities=16% Similarity=0.176 Sum_probs=184.2
Q ss_pred eEEEccCCCCcccCChhhhcCC--CCCCEEEcccCcccccCCcccccCCCCCEEEccCcccccc-CcccccCCCCCcEEe
Q 040487 2 IVINLIQNQLSGHLPSTMGCTL--PNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGL-IPNTFGNLRFLNWLS 78 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l--~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ 78 (327)
+.++++++.+. +..+. .+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus 50 ~~l~l~~~~~~---~~~~~-~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTG-RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SEEECTTCBCC---HHHHH-HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred eeeccccccCC---HHHHH-hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 57889988776 33444 56 8999999999999866554 56799999999999998765 777889999999999
Q ss_pred CCCCccccccCCCCCCcccCchhhhhccccccEEEccCC-ccccc-CCccccCCCCCcEEEccCC-cccCC-CchhccCC
Q 040487 79 PVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGC-ELKGS-IPQEIGNLSGLIVLNLFNN-DLIGT-IPKTVGGL 154 (327)
Q Consensus 79 l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~ 154 (327)
+++|.++ +..+..+..++ +|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..+
T Consensus 125 L~~~~l~----------~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 125 LEGLRLS----------DPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp CTTCBCC----------HHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred CcCcccC----------HHHHHHHhcCC-CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 8888764 34667777776 9999999999 56642 5666788999999999999 88753 46667788
Q ss_pred C-CCCEEEccCCc--cc-cccCccccCccccchhhccCCCCCCEEEcCCCc-ccccCCccccCccCCcEEecCCCcCCCC
Q 040487 155 Q-QLQGLDLFGNN--LQ-GSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNK-LSSSIPSSFWNLEYILQIDLSSNSLSGS 229 (327)
Q Consensus 155 ~-~L~~L~l~~n~--~~-~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 229 (327)
+ +|+.|++++|. ++ +.++..+. .+++|++|++++|. +++..+..+..+++|+.|++++|. +.
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~-----------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~ 260 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVR-----------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DI 260 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHH-----------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TC
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHh-----------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CC
Confidence 9 99999999994 44 23333333 35689999999998 777777788899999999999995 22
Q ss_pred CchhhhcccccccccCccccCCCCCCCeEeCcCCcceeeCCCCCCC-CCcceecccCCCCCCCCCCC
Q 040487 230 LLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEGEIPIKGPF-RNFSTQSCFGNYALGSPPIL 295 (327)
Q Consensus 230 ~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~l~l~~n~~l~~~p~~ 295 (327)
.+..+. .+..+++|+.|++++| ++... ...+ .++..+++++|...+..|..
T Consensus 261 ~~~~~~------------~l~~~~~L~~L~l~~~-i~~~~--~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 261 IPETLL------------ELGEIPTLKTLQVFGI-VPDGT--LQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CGGGGG------------GGGGCTTCCEEECTTS-SCTTC--HHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CHHHHH------------HHhcCCCCCEEeccCc-cCHHH--HHHHHhhCcceEEecccCccccCCc
Confidence 222221 2345789999999988 33210 0122 23666678777432555554
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.4e-23 Score=181.40 Aligned_cols=224 Identities=21% Similarity=0.151 Sum_probs=170.5
Q ss_pred eEEEccCCCCccc----CChhhhcCCCCCCEEEcccCcccccCCccc--ccCCCCCEEEccCccccccCc----ccccCC
Q 040487 2 IVINLIQNQLSGH----LPSTMGCTLPNLERLTLSHNKLSGTIPNSI--INASKLITLNLGYNYFSGLIP----NTFGNL 71 (327)
Q Consensus 2 ~~L~l~~~~~~~~----lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l 71 (327)
+.+.+.++.+... ++..+ .+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 67 ~~l~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 67 RRLTVGAAQVPAQLLVGALRVL--AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CEEEECSCCCBHHHHHHHHHHH--HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred eEEEEeCCcCCHHHHHHHHHhc--ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 5677777766521 12222 35779999999999998888887 889999999999999986544 345578
Q ss_pred CCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCccccc--C--CccccCCCCCcEEEccCCcccCCC
Q 040487 72 RFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGS--I--PQEIGNLSGLIVLNLFNNDLIGTI 147 (327)
Q Consensus 72 ~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~ 147 (327)
++|++|++++|.++. ..+..+..++ +|++|++++|.+.+. + +..+..+++|++|++++|.++ .+
T Consensus 145 ~~L~~L~Ls~n~l~~----------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 212 (310)
T 4glp_A 145 PGLKVLSIAQAHSPA----------FSCEQVRAFP-ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TP 212 (310)
T ss_dssp SCCCEEEEECCSSCC----------CCTTSCCCCT-TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CH
T ss_pred cCCCEEEeeCCCcch----------hhHHHhccCC-CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-ch
Confidence 999999988887744 2445566676 999999999987532 2 233467899999999999987 33
Q ss_pred ch----hccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCC
Q 040487 148 PK----TVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSS 223 (327)
Q Consensus 148 ~~----~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 223 (327)
+. .+..+++|+.|++++|.+++..|..+..+.. +++|++|++++|.++ .+|..+. ++|+.|++++
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~--------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW--------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC--------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCS
T ss_pred HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC--------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCC
Confidence 33 2467899999999999999777877766432 357999999999999 6777664 7999999999
Q ss_pred CcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCccee
Q 040487 224 NSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEG 267 (327)
Q Consensus 224 n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~ 267 (327)
|.+++. |. +..+++|+.|++++|++++
T Consensus 282 N~l~~~-~~----------------~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 282 NRLNRA-PQ----------------PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSC-CC----------------TTSCCCCSCEECSSTTTSC
T ss_pred CcCCCC-ch----------------hhhCCCccEEECcCCCCCC
Confidence 999864 21 2356899999999999875
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.9e-22 Score=170.62 Aligned_cols=193 Identities=19% Similarity=0.257 Sum_probs=155.3
Q ss_pred CCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCcc-ccccCcccccCCCCCcEEeCCC-Cccccc
Q 040487 10 QLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNY-FSGLIPNTFGNLRFLNWLSPVQ-NYLMTK 87 (327)
Q Consensus 10 ~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~ 87 (327)
.++ .+|. +. ++|++|++++|.+++..+..|..+++|++|++++|. ++...+.+|.++++|++|++++ |.++.
T Consensus 22 ~l~-~ip~-~~---~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~- 95 (239)
T 2xwt_C 22 DIQ-RIPS-LP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY- 95 (239)
T ss_dssp SCS-SCCC-CC---TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-
T ss_pred Ccc-ccCC-CC---CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-
Confidence 344 6777 43 489999999999997766788999999999999997 8766666899999999999987 87755
Q ss_pred cCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCc---EEEccCC-cccCCCchhccCCCCCC-EEEc
Q 040487 88 PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLI---VLNLFNN-DLIGTIPKTVGGLQQLQ-GLDL 162 (327)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l 162 (327)
..+..+..++ +|++|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ .|++
T Consensus 96 ---------i~~~~f~~l~-~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 96 ---------IDPDALKELP-LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp ---------ECTTSEECCT-TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred ---------cCHHHhCCCC-CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 1234556666 99999999999885 565 78888888 9999999 88866667788999999 9999
Q ss_pred cCCccccccCccccCccccchhhccCCCCCCEEEcCCCc-ccccCCccccCc-cCCcEEecCCCcCCCCCch
Q 040487 163 FGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNK-LSSSIPSSFWNL-EYILQIDLSSNSLSGSLLP 232 (327)
Q Consensus 163 ~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~ls~n~l~~~~~~ 232 (327)
++|.++ .+|...... ++|++|++++|. +++..+..+..+ ++|+.|++++|.+++..+.
T Consensus 164 ~~n~l~-~i~~~~~~~-----------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 164 YNNGFT-SVQGYAFNG-----------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CSCCCC-EECTTTTTT-----------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CCCCCc-ccCHhhcCC-----------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 999998 665543322 368999999995 886667778888 9999999999999865443
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2e-24 Score=195.75 Aligned_cols=244 Identities=16% Similarity=0.153 Sum_probs=164.6
Q ss_pred cCChhhhcCCCCCCEEEcccCcccccCC----cccccCCCCCEEEccCcc---ccccCcccc-------cCCCCCcEEeC
Q 040487 14 HLPSTMGCTLPNLERLTLSHNKLSGTIP----NSIINASKLITLNLGYNY---FSGLIPNTF-------GNLRFLNWLSP 79 (327)
Q Consensus 14 ~lp~~~~~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~L~~n~---l~~~~~~~l-------~~l~~L~~L~l 79 (327)
.++..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|++
T Consensus 23 ~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4666666 78889999999998885533 346678899999998864 444455444 68899999998
Q ss_pred CCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCcc----ccCC---------CCCcEEEccCCccc-C
Q 040487 80 VQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQE----IGNL---------SGLIVLNLFNNDLI-G 145 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l---------~~L~~L~l~~n~~~-~ 145 (327)
++|.++... ...++..+..++ +|++|++++|.++...+.. +..+ ++|++|++++|.+. .
T Consensus 102 s~n~l~~~~------~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 102 SDNAFGPTA------QEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp CSCCCCTTT------HHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred CCCcCCHHH------HHHHHHHHHhCC-CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 888764311 113566777777 8999999999886433322 3333 78999999999886 3
Q ss_pred CCc---hhccCCCCCCEEEccCCccccc-----cCccccCccccchhhccCCCCCCEEEcCCCccc----ccCCccccCc
Q 040487 146 TIP---KTVGGLQQLQGLDLFGNNLQGS-----IPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLS----SSIPSSFWNL 213 (327)
Q Consensus 146 ~~~---~~~~~~~~L~~L~l~~n~~~~~-----~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~----~~~~~~l~~l 213 (327)
..+ ..+..+++|+.|++++|.++.. .+..+. .+++|+.|++++|.++ ..+|..+..+
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-----------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-----------YCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-----------GCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-----------cCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 333 3566788999999999888632 111332 3557889999999886 4567777888
Q ss_pred cCCcEEecCCCcCCCCCchhhhcccccccccCcccc--CCCCCCCeEeCcCCccee----eCCCC--CCCCCcceecccC
Q 040487 214 EYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVI--GALPHLKQLNLSYNRLEG----EIPIK--GPFRNFSTQSCFG 285 (327)
Q Consensus 214 ~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l--~~~~~L~~L~l~~n~l~~----~~~~~--~~~~~L~~l~l~~ 285 (327)
++|+.|++++|.+++.....++ ..+ +.+++|+.|++++|.+++ .+|.. ..+++|+.+++++
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~-----------~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVV-----------DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHH-----------HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred CCcCEEECCCCCCchhhHHHHH-----------HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 8899999999988765333332 222 235666666666666665 23332 2356666666666
Q ss_pred CC
Q 040487 286 NY 287 (327)
Q Consensus 286 n~ 287 (327)
|+
T Consensus 313 N~ 314 (386)
T 2ca6_A 313 NR 314 (386)
T ss_dssp SB
T ss_pred Cc
Confidence 64
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=4.9e-24 Score=193.15 Aligned_cols=256 Identities=20% Similarity=0.198 Sum_probs=186.0
Q ss_pred CeEEEccCCCCcccCChh----hhcCCCCCCEEEcccCcc---cccCCccc-------ccCCCCCEEEccCccccc----
Q 040487 1 MIVINLIQNQLSGHLPST----MGCTLPNLERLTLSHNKL---SGTIPNSI-------INASKLITLNLGYNYFSG---- 62 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~----~~~~l~~L~~L~l~~~~l---~~~~~~~l-------~~l~~L~~L~L~~n~l~~---- 62 (327)
|++|++++|.+.+..+.. +. .+++|++|++++|.+ ++.+|..+ ..+++|++|++++|.++.
T Consensus 34 L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 34 VKEIVLSGNTIGTEAARWLSENIA-SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTT-TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred ccEEECCCCCCCHHHHHHHHHHHH-hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 678999999988654433 44 789999999999744 44455444 688999999999999986
Q ss_pred cCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhc---------cccccEEEccCCccc-ccCC---ccccC
Q 040487 63 LIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNF---------SASLQEFNAYGCELK-GSIP---QEIGN 129 (327)
Q Consensus 63 ~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~---------~~~L~~L~l~~~~~~-~~~~---~~~~~ 129 (327)
.++..+..+++|++|++++|.++... ...++..+..+ + +|++|++++|.++ ..++ ..+..
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~------~~~l~~~l~~l~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQA------GAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHH------HHHHHHHHHHHHHHHHHHTCC-CCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHH------HHHHHHHHHHHhhhhhcccCC-CCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 36778889999999999999875310 01133334443 5 9999999999987 3333 45677
Q ss_pred CCCCcEEEccCCcccC-----CCchhccCCCCCCEEEccCCccc----cccCccccCccccchhhccCCCCCCEEEcCCC
Q 040487 130 LSGLIVLNLFNNDLIG-----TIPKTVGGLQQLQGLDLFGNNLQ----GSIPYDLCNLKRLYSLLLQGLVSLRELYLDSN 200 (327)
Q Consensus 130 l~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n 200 (327)
+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ ..+|..+.. +++|++|++++|
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-----------~~~L~~L~L~~n 254 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-----------WPNLRELGLNDC 254 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-----------CTTCCEEECTTC
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc-----------CCCcCEEECCCC
Confidence 8999999999999873 23337788999999999999996 345554444 457999999999
Q ss_pred ccccc----CCcccc--CccCCcEEecCCCcCCCCCchhhhcccccccccCcccc-CCCCCCCeEeCcCCcceeeCCCC-
Q 040487 201 KLSSS----IPSSFW--NLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVI-GALPHLKQLNLSYNRLEGEIPIK- 272 (327)
Q Consensus 201 ~l~~~----~~~~l~--~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~- 272 (327)
.+++. ++..+. .+++|+.|++++|.+++.....++ ..+ ..+++|+.|++++|++++..+..
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~-----------~~l~~~l~~L~~L~l~~N~l~~~~~~~~ 323 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK-----------TVIDEKMPDLLFLELNGNRFSEEDDVVD 323 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH-----------HHHHHHCTTCCEEECTTSBSCTTSHHHH
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH-----------HHHHhcCCCceEEEccCCcCCcchhHHH
Confidence 99865 455553 389999999999999874222222 222 34689999999999998654311
Q ss_pred ---CCCCCcceecccCC
Q 040487 273 ---GPFRNFSTQSCFGN 286 (327)
Q Consensus 273 ---~~~~~L~~l~l~~n 286 (327)
..++.++...++.+
T Consensus 324 ~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 324 EIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHHHHTCCEECCC
T ss_pred HHHHHhhhcCcchhhhc
Confidence 22444444445444
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=6e-22 Score=167.53 Aligned_cols=196 Identities=19% Similarity=0.254 Sum_probs=158.2
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCc-ccccCCcccccCCCCCEEEccC-ccccccCcccccCCCCCcEEe
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNK-LSGTIPNSIINASKLITLNLGY-NYFSGLIPNTFGNLRFLNWLS 78 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~ 78 (327)
|++|++++|+++ .+|...+..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|.++++|++|+
T Consensus 33 l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp CCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred ccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 578999999998 4555433489999999999997 8866667899999999999998 999876667899999999999
Q ss_pred CCCCccccccCCCCCCcccCchhhhhcccccc---EEEccCC-cccccCCccccCCCCCc-EEEccCCcccCCCchhccC
Q 040487 79 PVQNYLMTKPLAANPLRGFLPSLVSNFSASLQ---EFNAYGC-ELKGSIPQEIGNLSGLI-VLNLFNNDLIGTIPKTVGG 153 (327)
Q Consensus 79 l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~ 153 (327)
+++|.+++ +|. +..+. +|+ +|++++| .+....+..+..+++|+ +|++++|.++...+..+..
T Consensus 112 l~~n~l~~-----------lp~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 112 IFNTGLKM-----------FPD-LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp EEEECCCS-----------CCC-CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred CCCCCCcc-----------ccc-ccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 99998865 444 55555 777 9999999 88866666789999999 9999999998444444544
Q ss_pred CCCCCEEEccCCc-cccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCC
Q 040487 154 LQQLQGLDLFGNN-LQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSN 224 (327)
Q Consensus 154 ~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n 224 (327)
++|+.|++++|. +++..+..+..+ .++|+.|++++|.++ .+|.. .+++|+.|+++++
T Consensus 179 -~~L~~L~L~~n~~l~~i~~~~~~~l----------~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVIDKDAFGGV----------YSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -CEEEEEECTTCTTCCEECTTTTTTC----------SBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred -CCCCEEEcCCCCCcccCCHHHhhcc----------ccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 899999999995 884444555553 047999999999998 45543 6788999999876
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=177.14 Aligned_cols=230 Identities=18% Similarity=0.153 Sum_probs=170.6
Q ss_pred CCCCCEEEcccCcccccCCc---ccccCCCCCEEEccCccccccCcccc--cCCCCCcEEeCCCCccccccCCCCCCccc
Q 040487 23 LPNLERLTLSHNKLSGTIPN---SIINASKLITLNLGYNYFSGLIPNTF--GNLRFLNWLSPVQNYLMTKPLAANPLRGF 97 (327)
Q Consensus 23 l~~L~~L~l~~~~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~l~~~~~~~~ 97 (327)
...++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++.. ..
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-------~~ 135 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR-------SW 135 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT-------SS
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh-------hh
Confidence 34567888888776532111 12245679999999999998888887 89999999999998875410 00
Q ss_pred Cc-hhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCC--C--chhccCCCCCCEEEccCCccccccC
Q 040487 98 LP-SLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGT--I--PKTVGGLQQLQGLDLFGNNLQGSIP 172 (327)
Q Consensus 98 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~ 172 (327)
++ ..+..++ +|++|++++|.+....+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|.++ .++
T Consensus 136 ~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~ 213 (310)
T 4glp_A 136 LAELQQWLKP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPT 213 (310)
T ss_dssp HHHHHTTBCS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHH
T ss_pred hHHHHhhhcc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chH
Confidence 11 2334455 999999999999877778899999999999999987532 2 223467899999999999886 322
Q ss_pred ccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCc---cCCcEEecCCCcCCCCCchhhhcccccccccCcccc
Q 040487 173 YDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNL---EYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVI 249 (327)
Q Consensus 173 ~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l 249 (327)
..... .++.+++|++|++++|.+++..|..+..+ ++|+.|++++|.++ .+|.. +
T Consensus 214 ~~~~~-------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---------------~ 270 (310)
T 4glp_A 214 GVCAA-------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG---------------L 270 (310)
T ss_dssp HHHHH-------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC---------------C
T ss_pred HHHHH-------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh---------------h
Confidence 21100 11235679999999999998777776665 69999999999998 44432 2
Q ss_pred CCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCCC
Q 040487 250 GALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGNY 287 (327)
Q Consensus 250 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n~ 287 (327)
.++|++|++++|++++ +|....+++|+.+++++|+
T Consensus 271 --~~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 --PAKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp --CSCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTT
T ss_pred --cCCCCEEECCCCcCCC-CchhhhCCCccEEECcCCC
Confidence 2799999999999995 4556788999999999996
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.7e-21 Score=171.07 Aligned_cols=193 Identities=22% Similarity=0.313 Sum_probs=150.1
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
.+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++. ++ .
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-----------~~-~ 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-----------VS-A 102 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-----------CG-G
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-----------ch-h
Confidence 5788999999999888 444 57888999999999998884 444 8889999999988888755 22 4
Q ss_pred hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCcccc
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRL 181 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 181 (327)
+..++ +|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++ ++. +.
T Consensus 103 ~~~l~-~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~----- 170 (308)
T 1h6u_A 103 IAGLQ-SIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LA----- 170 (308)
T ss_dssp GTTCT-TCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GT-----
T ss_pred hcCCC-CCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hc-----
Confidence 66666 89999999998875 33 37888999999999998875433 7788999999999998873 332 33
Q ss_pred chhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCc
Q 040487 182 YSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLS 261 (327)
Q Consensus 182 ~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~ 261 (327)
.+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|+++
T Consensus 171 ------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-----------------l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 171 ------NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-----------------LANTSNLFIVTLT 225 (308)
T ss_dssp ------TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-----------------GTTCTTCCEEEEE
T ss_pred ------CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-----------------ccCCCCCCEEEcc
Confidence 35578999999999885433 7788899999999998876432 3467889999999
Q ss_pred CCccee
Q 040487 262 YNRLEG 267 (327)
Q Consensus 262 ~n~l~~ 267 (327)
+|++++
T Consensus 226 ~N~i~~ 231 (308)
T 1h6u_A 226 NQTITN 231 (308)
T ss_dssp EEEEEC
T ss_pred CCeeec
Confidence 998875
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.9e-21 Score=169.62 Aligned_cols=190 Identities=18% Similarity=0.283 Sum_probs=159.0
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.+. .+| .+. .+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus 43 L~~L~l~~~~i~-~l~-~~~-~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 43 ITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT 115 (308)
T ss_dssp CCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred cCEEEeeCCCcc-Cch-hhh-ccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECC
Confidence 678999999998 576 565 89999999999999994 444 8999999999999999985 4 468999999999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.++. ++. +..++ +|++|++++|.+....+ +..+++|++|++++|.+.+. +. +..+++|+.|
T Consensus 116 ~n~l~~-----------~~~-l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L 178 (308)
T 1h6u_A 116 STQITD-----------VTP-LAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTL 178 (308)
T ss_dssp TSCCCC-----------CGG-GTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEE
T ss_pred CCCCCC-----------chh-hcCCC-CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEE
Confidence 998865 332 66676 99999999999985433 88899999999999999853 33 8899999999
Q ss_pred EccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCC
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGS 229 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 229 (327)
++++|.+++ ++. + ..+++|++|++++|.+++.. .+..+++|+.|++++|.+++.
T Consensus 179 ~l~~n~l~~-~~~-l-----------~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 179 KADDNKISD-ISP-L-----------ASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp ECCSSCCCC-CGG-G-----------GGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred ECCCCccCc-Chh-h-----------cCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 999999983 332 2 33568999999999999654 378899999999999999763
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=7.3e-23 Score=181.78 Aligned_cols=231 Identities=18% Similarity=0.164 Sum_probs=173.9
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCccccc-CCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGT-IPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 79 (327)
+++|++++|.+.+..+. ++ .+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 72 l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp CSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 46789999988865554 55 789999999999988755 6777888999999999999988777888888999999998
Q ss_pred CCC-ccccccCCCCCCcccCchhhhhccccccEEEccCC-ccccc-CCccccCCC-CCcEEEccCCc--cc-CCCchhcc
Q 040487 80 VQN-YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGC-ELKGS-IPQEIGNLS-GLIVLNLFNND--LI-GTIPKTVG 152 (327)
Q Consensus 80 ~~n-~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~~~ 152 (327)
++| .++. ..++..+..++ +|++|++++| .++.. ++..+..++ +|++|++++|. ++ +.++..+.
T Consensus 150 ~~~~~l~~---------~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 150 SGCSGFSE---------FALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp TTCBSCCH---------HHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred CCCCCCCH---------HHHHHHHhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 888 4532 12556677777 8999999999 77743 456677788 99999999984 44 34566677
Q ss_pred CCCCCCEEEccCCc-cccccCccccCccccchhhccCCCCCCEEEcCCCc-ccccCCccccCccCCcEEecCCCcCCCCC
Q 040487 153 GLQQLQGLDLFGNN-LQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNK-LSSSIPSSFWNLEYILQIDLSSNSLSGSL 230 (327)
Q Consensus 153 ~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 230 (327)
.+++|+.|++++|. +++..+..+.. +++|++|++++|. +++.....+..+++|+.|++++| ++...
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~~-----------l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~ 287 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFFQ-----------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT 287 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGG-----------CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHhC-----------CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH
Confidence 88999999999998 66555555544 3578999999984 44333345778899999999998 55444
Q ss_pred chhhhcccccccccCccccCCCCCCCeEeCcCCcceeeCCCC
Q 040487 231 LPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEGEIPIK 272 (327)
Q Consensus 231 ~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 272 (327)
...+. .+++.|++++|++++..|..
T Consensus 288 ~~~l~-----------------~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 288 LQLLK-----------------EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp HHHHH-----------------HHSTTSEESCCCSCCTTCSS
T ss_pred HHHHH-----------------hhCcceEEecccCccccCCc
Confidence 33332 24666678889998776654
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=5.7e-21 Score=162.75 Aligned_cols=180 Identities=24% Similarity=0.246 Sum_probs=123.3
Q ss_pred CCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhh
Q 040487 25 NLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSN 104 (327)
Q Consensus 25 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~ 104 (327)
..++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++ ..+..+..
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~~~~ 81 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT----------LSAGVFDD 81 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----------CCTTTTTT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc----------cCHhHhcc
Confidence 3556666666666 4554443 466677777766665555566666777777766665533 22333444
Q ss_pred ccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchh
Q 040487 105 FSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSL 184 (327)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l 184 (327)
++ +|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+
T Consensus 82 l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------ 154 (251)
T 3m19_A 82 LT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL------ 154 (251)
T ss_dssp CT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC------
T ss_pred CC-cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC------
Confidence 54 67777777776665555667778888888888888876666667778888888888888874444345443
Q ss_pred hccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCC
Q 040487 185 LLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGS 229 (327)
Q Consensus 185 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 229 (327)
++|++|++++|.+++..+..+..+++|+.|++++|.++..
T Consensus 155 -----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 155 -----TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -----TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -----cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 4688888888888866666788888888999998888765
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.9e-20 Score=157.58 Aligned_cols=181 Identities=22% Similarity=0.180 Sum_probs=147.7
Q ss_pred CCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccc
Q 040487 48 SKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEI 127 (327)
Q Consensus 48 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 127 (327)
...++++++++.++ .+|..+. ++++.|++++|.+++ ..+..+..++ +|++|++++|.+.+..+..+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~----------~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLAT----------LSDATFRGLT-KLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCC----------CCTTTTTTCT-TCCEEECTTSCCCCCCTTTT
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCc----------cCHhHhcCcc-cCCEEECCCCcCCccCHhHh
Confidence 35688999999988 6776654 689999988888754 2444566776 99999999999998777778
Q ss_pred cCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCC
Q 040487 128 GNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIP 207 (327)
Q Consensus 128 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~ 207 (327)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.. +++|++|++++|.+++..+
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----------l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-----------LTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------CTTCCEEECCSSCCCCCCT
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-----------CCcccEEECcCCcCCccCH
Confidence 99999999999999999777778889999999999999998444434444 4479999999999997666
Q ss_pred ccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCcceee
Q 040487 208 SSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEGE 268 (327)
Q Consensus 208 ~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~ 268 (327)
..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|++.+.
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~---------------~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHG---------------AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTT---------------TTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHH---------------HHhCCCCCCEEEeeCCceeCC
Confidence 6788999999999999999876553 344678999999999999865
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.5e-20 Score=155.52 Aligned_cols=175 Identities=22% Similarity=0.212 Sum_probs=86.9
Q ss_pred EEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCc
Q 040487 4 INLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNY 83 (327)
Q Consensus 4 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 83 (327)
++.+++.+. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.
T Consensus 12 v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 12 VECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 445555554 4554432 456666666666664444445566666666666666654333445556666666655555
Q ss_pred cccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEcc
Q 040487 84 LMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLF 163 (327)
Q Consensus 84 l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 163 (327)
+ ....+..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 88 l-----------------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 88 L-----------------------------------QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp C-----------------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred C-----------------------------------CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 4 32222334444555555555555543333334445555555555
Q ss_pred CCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhh
Q 040487 164 GNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQ 235 (327)
Q Consensus 164 ~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~ 235 (327)
+|.+++..+..+.. +++|++|++++|.+.+ .+++|+.|+++.|.+++.+|..+.
T Consensus 133 ~N~l~~~~~~~~~~-----------l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 133 QNQLKSVPDGVFDR-----------LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp SSCCSCCCTTTTTT-----------CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CCccceeCHHHhcc-----------CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 55554222222222 2245555555554432 233455555555555555554444
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.8e-20 Score=166.24 Aligned_cols=235 Identities=20% Similarity=0.171 Sum_probs=174.4
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCc-ccccCCCCCcEE-eC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIP-NTFGNLRFLNWL-SP 79 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L-~l 79 (327)
++++.++++++ .+|..+. +++++|++++|+++...+.+|.++++|++|+|++|++.+.+| .+|.++++++++ .+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 35677888888 8998764 689999999999996555679999999999999999865555 568899988764 55
Q ss_pred CCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccC-CcccCCCchhccCC-CCC
Q 040487 80 VQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFN-NDLIGTIPKTVGGL-QQL 157 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~-~~L 157 (327)
..|+++. ..|..+..++ +|++|++++|.+....+..+....++..+++.+ +.+....+..|..+ ..+
T Consensus 88 ~~N~l~~----------l~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 88 KANNLLY----------INPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp EETTCCE----------ECTTSBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred cCCcccc----------cCchhhhhcc-ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 5666644 3355667777 999999999999866565666777888898865 55664445566665 468
Q ss_pred CEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCC-CcccccCCccccCccCCcEEecCCCcCCCCCchhhhc
Q 040487 158 QGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDS-NKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQK 236 (327)
Q Consensus 158 ~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 236 (327)
+.|++++|.++ .++...... .+|+++++.+ |.++...+.+|..+++|+.|++++|+++...+..+.+
T Consensus 157 ~~L~L~~N~i~-~i~~~~f~~-----------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~ 224 (350)
T 4ay9_X 157 VILWLNKNGIQ-EIHNSAFNG-----------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224 (350)
T ss_dssp EEEECCSSCCC-EECTTSSTT-----------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred hhhcccccccc-CCChhhccc-----------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence 89999999998 555544332 2588999975 6676444457899999999999999998766555666
Q ss_pred ccccccccC-----ccccCCCCCCCeEeCcCC
Q 040487 237 LKQQSLRKN-----SQVIGALPHLKQLNLSYN 263 (327)
Q Consensus 237 L~~l~l~~~-----~~~l~~~~~L~~L~l~~n 263 (327)
|+.|++.++ -..+..+++|+.++++++
T Consensus 225 L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred chHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 665554333 124566777788887654
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=6.2e-20 Score=173.07 Aligned_cols=194 Identities=26% Similarity=0.317 Sum_probs=134.9
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+++|++++|+++ .+|..++ ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 61 L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 61 FSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp CSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred ccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 467888888887 4776653 67888888888887 566 346788888888888875 665 554 78888888
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.+++ +|. .++ +|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|
T Consensus 129 ~N~l~~-----------lp~---~l~-~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L 185 (571)
T 3cvr_A 129 NNQLTM-----------LPE---LPA-LLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEAL 185 (571)
T ss_dssp SSCCSC-----------CCC---CCT-TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEE
T ss_pred CCcCCC-----------CCC---cCc-cccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEE
Confidence 777755 333 233 78888888888774 454 46778888888888775 555 44 788888
Q ss_pred EccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhccc
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLK 238 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~ 238 (327)
++++|.++ .+|. +.. .| ....+.|+.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+.++.
T Consensus 186 ~Ls~N~L~-~lp~-~~~--~L----~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 186 DVSTNLLE-SLPA-VPV--RN----HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ECCSSCCS-SCCC-CC--------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ECcCCCCC-chhh-HHH--hh----hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 88888887 6665 432 11 011223488888888887 5677777788888888888888877777766544
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2.8e-19 Score=159.73 Aligned_cols=234 Identities=17% Similarity=0.127 Sum_probs=157.8
Q ss_pred CEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCch-hhhhc
Q 040487 27 ERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPS-LVSNF 105 (327)
Q Consensus 27 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~-~~~~~ 105 (327)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|++++|.+.+ .++. .+..+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~----------~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE----------VIEADVFSNL 78 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC----------EECTTSBCSC
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC----------ccChhHhhcc
Confidence 67888999999 778765 3589999999999996555689999999999999887633 2333 34556
Q ss_pred ccccc-EEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccC-CccccccCccccCccccch
Q 040487 106 SASLQ-EFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFG-NNLQGSIPYDLCNLKRLYS 183 (327)
Q Consensus 106 ~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~ 183 (327)
+ +++ .+.+..|.+....+..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+.
T Consensus 79 ~-~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~---- 153 (350)
T 4ay9_X 79 P-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS---- 153 (350)
T ss_dssp T-TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB----
T ss_pred h-hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc----
Confidence 5 555 466777888877788899999999999999999866666677778888999876 456533333444432
Q ss_pred hhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCC-CcCCCCCc---hhhhcccccccccCc-ccc--CCCCCCC
Q 040487 184 LLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSS-NSLSGSLL---PHIQKLKQQSLRKNS-QVI--GALPHLK 256 (327)
Q Consensus 184 l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~-n~l~~~~~---~~l~~L~~l~l~~~~-~~l--~~~~~L~ 256 (327)
..++.|++++|.++. ++.......+|+.+++++ |.++...+ ..+++|+.|++++|. ..+ ..+.+|+
T Consensus 154 ------~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~ 226 (350)
T 4ay9_X 154 ------FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226 (350)
T ss_dssp ------SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC
T ss_pred ------hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch
Confidence 258899999999994 454444567899999986 45554332 233445555555550 000 1233444
Q ss_pred eEeCcCCcceeeCCCCCCCCCcceecccC
Q 040487 257 QLNLSYNRLEGEIPIKGPFRNFSTQSCFG 285 (327)
Q Consensus 257 ~L~l~~n~l~~~~~~~~~~~~L~~l~l~~ 285 (327)
.|.+.++.-...+|....+++|+.+++.+
T Consensus 227 ~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred HhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 44444433223455445555566555543
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=9e-22 Score=187.81 Aligned_cols=187 Identities=13% Similarity=0.042 Sum_probs=107.0
Q ss_pred chhhhhccccccEEEccCCcccccCC-ccccCCCCCcEEEccCCccc-CCCchhccCCCCCCEEEccC-----------C
Q 040487 99 PSLVSNFSASLQEFNAYGCELKGSIP-QEIGNLSGLIVLNLFNNDLI-GTIPKTVGGLQQLQGLDLFG-----------N 165 (327)
Q Consensus 99 ~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~-----------n 165 (327)
|..+..++ +|++|++++|.++.... ..+..+++|++|+++ +.+. ..++.....+++|+.|++++ +
T Consensus 286 ~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 286 PILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred HHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 33444444 66666666666442211 224556666666666 2222 12222234566677777772 3
Q ss_pred ccccccC-ccccCccccchhhc--------------cCCCCCCEEEcC----CCccccc-----CCccccCccCCcEEec
Q 040487 166 NLQGSIP-YDLCNLKRLYSLLL--------------QGLVSLRELYLD----SNKLSSS-----IPSSFWNLEYILQIDL 221 (327)
Q Consensus 166 ~~~~~~~-~~l~~~~~L~~l~l--------------~~~~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L~l 221 (327)
.+++... .....+++|+.+.+ ..+++|+.|+++ .|.+++. ++..+..+++|+.|++
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 4442211 11233455555554 126677777775 4556542 2223455777888888
Q ss_pred CCCc--CCCCCchh----hhcccccccccC-------ccccCCCCCCCeEeCcCCcceee-CCCC-CCCCCcceecccCC
Q 040487 222 SSNS--LSGSLLPH----IQKLKQQSLRKN-------SQVIGALPHLKQLNLSYNRLEGE-IPIK-GPFRNFSTQSCFGN 286 (327)
Q Consensus 222 s~n~--l~~~~~~~----l~~L~~l~l~~~-------~~~l~~~~~L~~L~l~~n~l~~~-~~~~-~~~~~L~~l~l~~n 286 (327)
++|. +++..+.. +++|+.|++++| +..+..+++|++|++++|++++. ++.. ..+++|+.|++++|
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 6543 55543332 456888888877 33457788999999999987643 2222 45788999999999
Q ss_pred C
Q 040487 287 Y 287 (327)
Q Consensus 287 ~ 287 (327)
.
T Consensus 524 ~ 524 (592)
T 3ogk_B 524 R 524 (592)
T ss_dssp B
T ss_pred c
Confidence 6
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=6.4e-19 Score=145.65 Aligned_cols=137 Identities=26% Similarity=0.236 Sum_probs=106.1
Q ss_pred cccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhcc
Q 040487 108 SLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQ 187 (327)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~ 187 (327)
+|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---------- 122 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK---------- 122 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhcc----------
Confidence 4444555555554344455778899999999999999766667889999999999999998544444544
Q ss_pred CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCccee
Q 040487 188 GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEG 267 (327)
Q Consensus 188 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~ 267 (327)
+++|++|++++|.+++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|+++|
T Consensus 123 -l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----------------------~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 123 -LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----------------------CPGIRYLSEWINKHSG 179 (208)
T ss_dssp -CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----------------------TTTTHHHHHHHHHCTT
T ss_pred -CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----------------------CCCHHHHHHHHHhCCc
Confidence 45799999999999976666788999999999999988753 3678888888888888
Q ss_pred eCCCC-CCCCC
Q 040487 268 EIPIK-GPFRN 277 (327)
Q Consensus 268 ~~~~~-~~~~~ 277 (327)
.+|.. +.++.
T Consensus 180 ~ip~~~~~l~~ 190 (208)
T 2o6s_A 180 VVRNSAGSVAP 190 (208)
T ss_dssp TBBCTTSSBCT
T ss_pred eeeccCccccC
Confidence 88765 44444
No 97
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=5.8e-21 Score=182.18 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=49.5
Q ss_pred CeEEEccCCCCcccCCh---hhhcCCCCCCEEEcccCccc----ccCCcccccCCCCCEEEccCccccccCcccccCCCC
Q 040487 1 MIVINLIQNQLSGHLPS---TMGCTLPNLERLTLSHNKLS----GTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRF 73 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l~~~~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 73 (327)
|++|++++|.+.+.-+. .+...+++|++|++++|.++ +.++..+..+++|++|++++|.+.+ ++..+.++++
T Consensus 166 L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~ 244 (592)
T 3ogk_B 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAAN 244 (592)
T ss_dssp CSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTT
T ss_pred CCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhH
Confidence 57788888877644211 12236788888888887776 2233444567788888888777653 4455555555
Q ss_pred CcEEeCC
Q 040487 74 LNWLSPV 80 (327)
Q Consensus 74 L~~L~l~ 80 (327)
|++|+++
T Consensus 245 L~~L~l~ 251 (592)
T 3ogk_B 245 LEEFCGG 251 (592)
T ss_dssp CCEEEEC
T ss_pred HHhhccc
Confidence 5555554
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=8.1e-19 Score=152.68 Aligned_cols=172 Identities=22% Similarity=0.342 Sum_probs=104.4
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.++. ++ .
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-----------~~-~ 107 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-----------LS-S 107 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-----------GG-G
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-----------Ch-h
Confidence 45667777777777663 33 366677777777777777643 33 6677777777777666543 22 2
Q ss_pred hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCcccc
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRL 181 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 181 (327)
+..++ +|++|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+ +.
T Consensus 108 l~~l~-~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~----- 175 (291)
T 1h6t_A 108 LKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA----- 175 (291)
T ss_dssp GTTCT-TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-----
T ss_pred hccCC-CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc-----
Confidence 44554 677777777766532 3456666677777776666643 445666666667766666653221 22
Q ss_pred chhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCC
Q 040487 182 YSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGS 229 (327)
Q Consensus 182 ~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 229 (327)
.+++|+.|++++|.+++ ++ .+..+++|+.|++++|.++..
T Consensus 176 ------~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 176 ------GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ------TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred ------CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 23456666666666663 33 356666666666666666543
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2.2e-18 Score=143.72 Aligned_cols=152 Identities=16% Similarity=0.237 Sum_probs=99.2
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCC-cccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIP-NSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
.++++++.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5677777776 5676553 456777777777775533 3466777777777777777765556677777777777776
Q ss_pred CccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEE
Q 040487 82 NYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 82 n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 161 (327)
|.++. ..+..+..++ +|++|++++|.+....+..+..+++|++|++++|.+++..|..|..+++|+.|+
T Consensus 91 N~l~~----------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 91 NRLEN----------VQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp SCCCC----------CCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CccCc----------cCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 66643 2233355555 666777776666655566666666666666666666655566666666666666
Q ss_pred ccCCcccc
Q 040487 162 LFGNNLQG 169 (327)
Q Consensus 162 l~~n~~~~ 169 (327)
+++|.+.+
T Consensus 160 L~~N~l~c 167 (220)
T 2v70_A 160 LLANPFNC 167 (220)
T ss_dssp CCSCCEEC
T ss_pred ecCcCCcC
Confidence 66666653
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=3.2e-18 Score=161.38 Aligned_cols=182 Identities=25% Similarity=0.286 Sum_probs=134.6
Q ss_pred CCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhh
Q 040487 25 NLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSN 104 (327)
Q Consensus 25 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~ 104 (327)
+|++|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.++. +|. +..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-----------ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-----------LPE-LPA 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-----------CCC-CCT
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-----------cch-hhc
Confidence 88889999888885 66655 378899999988888 566 457888888988887755 444 222
Q ss_pred ccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchh
Q 040487 105 FSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSL 184 (327)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l 184 (327)
+|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +.
T Consensus 121 ---~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------- 179 (571)
T 3cvr_A 121 ---SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------- 179 (571)
T ss_dssp ---TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--------
T ss_pred ---CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--------
Confidence 78888888888875 554 57888888888888875 444 56788888888888874 655 43
Q ss_pred hccCCCCCCEEEcCCCcccccCCccccCccCC-------cEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCe
Q 040487 185 LLQGLVSLRELYLDSNKLSSSIPSSFWNLEYI-------LQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQ 257 (327)
Q Consensus 185 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~ 257 (327)
++|+.|++++|.++ .+|. +.. +| +.|++++|.++. +|. .+..+++|+.
T Consensus 180 -----~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~---------------~l~~l~~L~~ 234 (571)
T 3cvr_A 180 -----ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPE---------------NILSLDPTCT 234 (571)
T ss_dssp -----TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCG---------------GGGGSCTTEE
T ss_pred -----CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCH---------------HHhcCCCCCE
Confidence 36888888888888 5665 443 66 888888888874 443 2334788999
Q ss_pred EeCcCCcceeeCCC
Q 040487 258 LNLSYNRLEGEIPI 271 (327)
Q Consensus 258 L~l~~n~l~~~~~~ 271 (327)
|++++|++++.+|.
T Consensus 235 L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 235 IILEDNPLSSRIRE 248 (571)
T ss_dssp EECCSSSCCHHHHH
T ss_pred EEeeCCcCCCcCHH
Confidence 99999999876654
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3e-18 Score=142.91 Aligned_cols=150 Identities=23% Similarity=0.320 Sum_probs=94.0
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
.+++++++++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566666666 5666543 56777777777777555556677777777777777777666667777777777777666
Q ss_pred ccccccCCCCCCcccCchh-hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEE
Q 040487 83 YLMTKPLAANPLRGFLPSL-VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 161 (327)
.++. +|.. +..++ +|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 91 ~l~~-----------l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 91 KITE-----------LPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CCCC-----------CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCc-----------cCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 6644 3322 33344 666666666666655555566666666666666666654444555566666666
Q ss_pred ccCCccc
Q 040487 162 LFGNNLQ 168 (327)
Q Consensus 162 l~~n~~~ 168 (327)
+++|.+.
T Consensus 159 L~~N~~~ 165 (220)
T 2v9t_B 159 LAQNPFI 165 (220)
T ss_dssp CCSSCEE
T ss_pred eCCCCcC
Confidence 6666554
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.8e-18 Score=149.24 Aligned_cols=168 Identities=24% Similarity=0.301 Sum_probs=140.3
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|++|++++|.+. .++. +. .+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus 48 L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 48 IDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLE 120 (291)
T ss_dssp CCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECT
T ss_pred ccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECC
Confidence 578999999998 5654 55 89999999999999995 444 8899999999999999985 3 458999999999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.++. + ..+..++ +|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|+.|
T Consensus 121 ~n~i~~-----------~-~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 121 HNGISD-----------I-NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp TSCCCC-----------C-GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCcCCC-----------C-hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 998865 2 3466676 999999999999854 578899999999999999986544 8899999999
Q ss_pred EccCCccccccCccccCccccchhhccCCCCCCEEEcCCCccccc
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSS 205 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~ 205 (327)
++++|.+++ ++ .+. .+++|+.|++++|.+++.
T Consensus 184 ~L~~N~i~~-l~-~l~-----------~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 184 YLSKNHISD-LR-ALA-----------GLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ECCSSCCCB-CG-GGT-----------TCTTCSEEEEEEEEEECC
T ss_pred ECCCCcCCC-Ch-hhc-----------cCCCCCEEECcCCcccCC
Confidence 999999983 33 233 356899999999999853
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.8e-20 Score=178.75 Aligned_cols=78 Identities=9% Similarity=0.099 Sum_probs=49.3
Q ss_pred ccCccCCcEEecCCCcCCCCCchh----hhcccccccccCc------ccc-CCCCCCCeEeCcCCcceeeCCC--CCCCC
Q 040487 210 FWNLEYILQIDLSSNSLSGSLLPH----IQKLKQQSLRKNS------QVI-GALPHLKQLNLSYNRLEGEIPI--KGPFR 276 (327)
Q Consensus 210 l~~l~~L~~L~ls~n~l~~~~~~~----l~~L~~l~l~~~~------~~l-~~~~~L~~L~l~~n~l~~~~~~--~~~~~ 276 (327)
+..+++|+.|++++ .+++..+.. +++|+.|++++|. ..+ ..+++|++|++++|++++.... ...++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34556677777755 454433332 3457777777761 122 4578888888888888543221 24578
Q ss_pred CcceecccCCCC
Q 040487 277 NFSTQSCFGNYA 288 (327)
Q Consensus 277 ~L~~l~l~~n~~ 288 (327)
+|+.|++++|+.
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 889999988864
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=2.9e-18 Score=163.23 Aligned_cols=173 Identities=21% Similarity=0.332 Sum_probs=118.0
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
.+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+.. . +..+++|++|+|++|.++. ++ .
T Consensus 41 ~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N~l~~-----------l~-~ 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIK-P-LTNLKNLGWLFLDENKIKD-----------LS-S 104 (605)
T ss_dssp HHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCC-----------CT-T
T ss_pred cCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCCh-h-hccCCCCCEEECcCCCCCC-----------Ch-h
Confidence 5677788888887777 333 4677788888888888777433 3 7777888888877777654 22 3
Q ss_pred hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCcccc
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRL 181 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 181 (327)
+..++ +|+.|++++|.+.. + +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..| +..
T Consensus 105 l~~l~-~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~---- 173 (605)
T 1m9s_A 105 LKDLK-KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG---- 173 (605)
T ss_dssp STTCT-TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT----
T ss_pred hccCC-CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc----
Confidence 45555 77778887777764 2 3567777778888877777743 456777777777777777764333 332
Q ss_pred chhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC
Q 040487 182 YSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL 230 (327)
Q Consensus 182 ~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 230 (327)
+++|+.|+|++|.+++ ++ .+..+++|+.|++++|.+++..
T Consensus 174 -------l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 174 -------LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -------CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred -------CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 4467777777777774 33 4667777777777777776543
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.4e-18 Score=154.35 Aligned_cols=159 Identities=25% Similarity=0.172 Sum_probs=69.9
Q ss_pred CCEEEccCccccccCccccc-CCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCcccc
Q 040487 50 LITLNLGYNYFSGLIPNTFG-NLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIG 128 (327)
Q Consensus 50 L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 128 (327)
+++|+|++|.+++..+..+. ++++|++|++++|.++. ..+..+..++ +|++|++++|.+....+..|.
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~----------i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~ 109 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----------ISSEAFVPVP-NLRYLDLSSNHLHTLDEFLFS 109 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE----------ECTTTTTTCT-TCCEEECCSSCCCEECTTTTT
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc----------cChhhccCCC-CCCEEECCCCcCCcCCHHHhC
Confidence 44444444444433333333 44444444444444322 1112233333 444444444444433333444
Q ss_pred CCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCc
Q 040487 129 NLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPS 208 (327)
Q Consensus 129 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~ 208 (327)
.+++|++|++++|.+....+..|..+++|+.|++++|.++ .+|..... .+..+++|+.|++++|.+++..+.
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIK-------DGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC-----------CTTCCEEECCSSCCCCCCHH
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhc-------CcccCCcCCEEECCCCCCCccCHH
Confidence 5555555555555555444444555555555555555554 23322110 001133455555555555533323
Q ss_pred cccCccC--CcEEecCCCcCC
Q 040487 209 SFWNLEY--ILQIDLSSNSLS 227 (327)
Q Consensus 209 ~l~~l~~--L~~L~ls~n~l~ 227 (327)
.+..++. ++.|++++|.+.
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEE
T ss_pred HhhhccHhhcceEEecCCCcc
Confidence 3444443 245555555544
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.4e-17 Score=139.71 Aligned_cols=150 Identities=23% Similarity=0.279 Sum_probs=71.2
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
.++.+++++. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 23 ~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3445555554 4554432 55555555555555444555555555555555555554333334455555555555555
Q ss_pred ccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEc
Q 040487 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDL 162 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 162 (327)
.++. ..+..+..++ +|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 99 ~l~~----------l~~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 99 QLTV----------LPSAVFDRLV-HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCCC----------CCTTTTTTCT-TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCc----------cChhHhCcch-hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 4433 1111223333 4455555554444 33444444444444444444444333333444444444444
Q ss_pred cCCccc
Q 040487 163 FGNNLQ 168 (327)
Q Consensus 163 ~~n~~~ 168 (327)
++|.+.
T Consensus 167 ~~N~~~ 172 (229)
T 3e6j_A 167 FGNPWD 172 (229)
T ss_dssp TTSCBC
T ss_pred eCCCcc
Confidence 444443
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.4e-17 Score=136.46 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=114.0
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
.+++|++|++++|.++ .++ .+..+++|++|++++|.+. . +..+..+++|++|++++|.++. ..+..
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~----------~~~~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTS----------DKIPN 107 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBG----------GGSCC
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCc----------ccChh
Confidence 6788888888888888 555 5788888899998888665 2 3467888888888888777643 23445
Q ss_pred hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCc-ccCCCchhccCCCCCCEEEccCCccccccCccccCccc
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNND-LIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKR 180 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 180 (327)
+..++ +|++|++++|.++...+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+++ ++ .+.
T Consensus 108 l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~---- 178 (197)
T 4ezg_A 108 LSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIE---- 178 (197)
T ss_dssp CTTCT-TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGG----
T ss_pred hcCCC-CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhc----
Confidence 66666 88899999888887677778888899999999887 55 444 57788899999999988873 33 333
Q ss_pred cchhhccCCCCCCEEEcCCCcccc
Q 040487 181 LYSLLLQGLVSLRELYLDSNKLSS 204 (327)
Q Consensus 181 L~~l~l~~~~~L~~L~l~~n~l~~ 204 (327)
.+++|++|++++|.+.+
T Consensus 179 -------~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 179 -------DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -------GCSSCCEEEECBC----
T ss_pred -------cCCCCCEEEeeCcccCC
Confidence 34578899999888764
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.7e-17 Score=157.94 Aligned_cols=170 Identities=24% Similarity=0.277 Sum_probs=141.6
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|+.|++++|.+. .+| .+. .+++|+.|+|++|.+++. +. +..+++|++|+|++|.+.+ ++ .+..+++|++|+++
T Consensus 45 L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 45 IDQIIANNSDIK-SVQ-GIQ-YLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp CCCCBCTTCCCC-CCT-TGG-GCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCEEECcCCCCC-CCh-HHc-cCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 577899999998 566 455 899999999999999954 43 8899999999999999984 33 78999999999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
+|.++. + ..+..++ +|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|
T Consensus 118 ~N~l~~-----------l-~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 118 HNGISD-----------I-NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp TSCCCC-----------C-GGGGGCT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCCC-----------C-ccccCCC-ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 998865 2 3466776 999999999999854 578899999999999999986555 8899999999
Q ss_pred EccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCC
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIP 207 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~ 207 (327)
++++|.+++ ++ .+. .+++|+.|++++|.+.+...
T Consensus 181 ~Ls~N~i~~-l~-~l~-----------~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 181 YLSKNHISD-LR-ALA-----------GLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ECCSSCCCB-CG-GGT-----------TCTTCSEEECCSEEEECCCC
T ss_pred ECcCCCCCC-Ch-HHc-----------cCCCCCEEEccCCcCcCCcc
Confidence 999999983 32 233 35689999999999986433
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=7.5e-18 Score=138.02 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=90.3
Q ss_pred ccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCC
Q 040487 45 INASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIP 124 (327)
Q Consensus 45 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 124 (327)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++. + ..+..++ +|++|++++|.+....+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-----------~-~~l~~l~-~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-----------Y-NPISGLS-NLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-----------C-GGGTTCT-TCCEEEEECTTCBGGGS
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-----------c-hhhhcCC-CCCEEEeECCccCcccC
Confidence 56677778888777776 445 56777777777777765432 1 2344454 66677776666665555
Q ss_pred ccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCc-cccccCccccCccccchhhccCCCCCCEEEcCCCccc
Q 040487 125 QEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNN-LQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLS 203 (327)
Q Consensus 125 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~ 203 (327)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|. ++ .++ .+. .+++|+.|++++|.++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~-----------~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK-----------TLPELKSLNIQFDGVH 172 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-----------GCSSCCEEECTTBCCC
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-----------CCCCCCEEECCCCCCc
Confidence 566666666666666666665555566666666666666665 43 222 222 2335666666666665
Q ss_pred ccCCccccCccCCcEEecCCCcCC
Q 040487 204 SSIPSSFWNLEYILQIDLSSNSLS 227 (327)
Q Consensus 204 ~~~~~~l~~l~~L~~L~ls~n~l~ 227 (327)
+ ++ .+..+++|+.|++++|++.
T Consensus 173 ~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 173 D-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp C-CT-TGGGCSSCCEEEECBC---
T ss_pred C-hH-HhccCCCCCEEEeeCcccC
Confidence 3 22 4455556666666666553
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.3e-17 Score=137.52 Aligned_cols=152 Identities=21% Similarity=0.216 Sum_probs=81.6
Q ss_pred CEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCC
Q 040487 51 ITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNL 130 (327)
Q Consensus 51 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 130 (327)
+.++++++.++ .+|..+. +++++|++++|.++. ..+..+..++ +|++|++++|.+....+..|..+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~----------i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKV----------IPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGL 79 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCE----------ECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCC----------cCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCC
Confidence 45666666665 4554433 466666666655533 1122344444 56666666666555555555556
Q ss_pred CCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccc
Q 040487 131 SGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSF 210 (327)
Q Consensus 131 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l 210 (327)
++|++|++++|.++...+..|..+++|+.|++++|.+++..+..+..+ ++|+.|++++|.+++..+..+
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL-----------HNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCSCCCTTTT
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC-----------CCCCEEECCCCcCCEECHHHH
Confidence 666666666666554434445555556666666655554434444332 245555555555554444445
Q ss_pred cCccCCcEEecCCCcCC
Q 040487 211 WNLEYILQIDLSSNSLS 227 (327)
Q Consensus 211 ~~l~~L~~L~ls~n~l~ 227 (327)
..+++|+.|++++|.+.
T Consensus 149 ~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred hCCCCCCEEEeCCCCcC
Confidence 55555555555555554
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=3.4e-17 Score=136.52 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=81.6
Q ss_pred cccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhcc
Q 040487 108 SLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQ 187 (327)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~ 187 (327)
+|++|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..|..+..+
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------- 128 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL--------- 128 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC---------
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC---------
Confidence 45555555555554445567777788888888888876666677778888888888888876556666553
Q ss_pred CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 188 GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 188 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
++|+.|++++|.+++..|..+..+++|+.|++++|.+....+
T Consensus 129 --~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 129 --SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp --TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred --ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 367888888888887777788888888888888888876543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=7e-17 Score=135.45 Aligned_cols=155 Identities=25% Similarity=0.221 Sum_probs=99.2
Q ss_pred CCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhc
Q 040487 26 LERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNF 105 (327)
Q Consensus 26 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~ 105 (327)
.+.++.+++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l--------------------- 76 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--------------------- 76 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---------------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC---------------------
Confidence 345555555555 4444332 4566666666666554455555555555555555544
Q ss_pred cccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhh
Q 040487 106 SASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLL 185 (327)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~ 185 (327)
....+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++ .+|..+..
T Consensus 77 --------------~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------- 133 (229)
T 3e6j_A 77 --------------GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-------- 133 (229)
T ss_dssp --------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG--------
T ss_pred --------------CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccccc--------
Confidence 3233344566777777777777777555556677777888888877777 66655544
Q ss_pred ccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC
Q 040487 186 LQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL 230 (327)
Q Consensus 186 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 230 (327)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 134 ---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 134 ---LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp ---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ---CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 346788888888887655566777888888888888877654
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=7.6e-20 Score=174.49 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=53.2
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccC-ccccc-CCcccccCCCCCEEEccCccccccCcccc----cCCCCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHN-KLSGT-IPNSIINASKLITLNLGYNYFSGLIPNTF----GNLRFL 74 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L 74 (327)
|++|++++|.+.+..+..+...+++|++|++++| .+++. ++..+..+++|++|++++|.+++..+..+ ..+++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 5678888887776666666545778888888877 44422 33333467788888888777654433322 255677
Q ss_pred cEEeCCCCc
Q 040487 75 NWLSPVQNY 83 (327)
Q Consensus 75 ~~L~l~~n~ 83 (327)
++|++++|.
T Consensus 187 ~~L~l~~~~ 195 (594)
T 2p1m_B 187 VSLNISCLA 195 (594)
T ss_dssp CEEECTTCC
T ss_pred cEEEecccC
Confidence 777776664
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.8e-17 Score=148.66 Aligned_cols=179 Identities=24% Similarity=0.237 Sum_probs=144.5
Q ss_pred eEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccc-cCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 2 IVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSII-NASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 2 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
+.++++++++. .+|..+. +.+++|++++|.+++..+..+. .+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 46889999998 7888765 5689999999999977777777 89999999999999997777889999999999999
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhc---cCCCCC
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTV---GGLQQL 157 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~L 157 (327)
+|.++. ..+..+..++ +|++|++++|.+....+..|..+++|+.|++++|.+....+..+ ..+++|
T Consensus 97 ~N~l~~----------~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 97 SNHLHT----------LDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp SSCCCE----------ECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCcCCc----------CCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 988765 2334566676 99999999999998778889999999999999999996555555 568999
Q ss_pred CEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccc
Q 040487 158 QGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSS 204 (327)
Q Consensus 158 ~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~ 204 (327)
+.|++++|.++...+..+..++.+ .++.|++++|.+..
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~---------~l~~l~l~~N~~~C 203 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAW---------VKNGLYLHNNPLEC 203 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHH---------HHTTEECCSSCEEC
T ss_pred CEEECCCCCCCccCHHHhhhccHh---------hcceEEecCCCccC
Confidence 999999999983333344443321 14789999998874
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=2.5e-20 Score=176.30 Aligned_cols=204 Identities=22% Similarity=0.244 Sum_probs=129.4
Q ss_pred ccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccc-cc--cCCCCCCcccCchhhhhccccccEEE-ccCCccc
Q 040487 45 INASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLM-TK--PLAANPLRGFLPSLVSNFSASLQEFN-AYGCELK 120 (327)
Q Consensus 45 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~--~l~~~~~~~~~~~~~~~~~~~L~~L~-l~~~~~~ 120 (327)
..+++|+.|+|++|.++ .+|..++.+++|++|++++|... .. -+......+..|..+..++ +|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-HHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-hcccCcchhhcccc
Confidence 35667777777777776 56777777777777776555310 00 0000112334556666665 666666 3433221
Q ss_pred ccCCc------ccc--CCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCC
Q 040487 121 GSIPQ------EIG--NLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSL 192 (327)
Q Consensus 121 ~~~~~------~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L 192 (327)
. ++. .+. ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+ ++|
T Consensus 424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-----------~~L 488 (567)
T 1dce_A 424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL-----------RCL 488 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC-----------TTC
T ss_pred h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC-----------CCC
Confidence 0 000 000 01247888888888874 555 778888888888888887 777666554 368
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC-chhhhcccccccccCccccCCCCCCCeEeCcCCcceeeCCC
Q 040487 193 RELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL-LPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEGEIPI 271 (327)
Q Consensus 193 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 271 (327)
+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |..+ ..+++|+.|++++|++++.++.
T Consensus 489 ~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l---------------~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 489 EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL---------------VSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG---------------GGCTTCCEEECTTSGGGGSSSC
T ss_pred CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH---------------hcCCCCCEEEecCCcCCCCccH
Confidence 888888888885 56 6778888888888888887765 5433 3567888888888888866554
Q ss_pred C----CCCCCcceec
Q 040487 272 K----GPFRNFSTQS 282 (327)
Q Consensus 272 ~----~~~~~L~~l~ 282 (327)
. ..+++|+.|+
T Consensus 552 ~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 552 QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTHHHHHCTTCSEEE
T ss_pred HHHHHHHCcccCccC
Confidence 3 2266676664
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=6.9e-18 Score=144.60 Aligned_cols=125 Identities=26% Similarity=0.326 Sum_probs=59.4
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
.+++|++|++++|.++ .++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++ ++..
T Consensus 39 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-----------l~~~ 103 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-----------LNGI 103 (263)
T ss_dssp HHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-----------CTTC
T ss_pred hcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-----------cCcc
Confidence 4555555555555555 233 355555555555555555532 22 5555555555555555433 1111
Q ss_pred hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccc
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQ 168 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 168 (327)
.. + +|+.|++++|.+++ + +.+..+++|++|++++|.+++. + .+..+++|+.|++++|.++
T Consensus 104 ~~--~-~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 104 PS--A-CLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CC--S-SCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred cc--C-cccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 01 1 45555555555442 1 1344455555555555554422 2 3444445555555554444
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=6.7e-18 Score=144.71 Aligned_cols=172 Identities=22% Similarity=0.225 Sum_probs=134.0
Q ss_pred CCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhh
Q 040487 23 LPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLV 102 (327)
Q Consensus 23 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~ 102 (327)
+.++..++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-----------~~~-l 81 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-----------LSP-L 81 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-----------CGG-G
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-----------Chh-h
Confidence 4557778888888884 33 5788999999999999988 455 68889999999999988865 444 6
Q ss_pred hhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccc
Q 040487 103 SNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLY 182 (327)
Q Consensus 103 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 182 (327)
..++ +|++|++++|.+.+ ++. +.. ++|++|++++|.+++ . ..+..+++|+.|++++|.+++ ++ .+.
T Consensus 82 ~~l~-~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~------ 147 (263)
T 1xeu_A 82 KDLT-KLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLG------ 147 (263)
T ss_dssp TTCS-SCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGG------
T ss_pred ccCC-CCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHc------
Confidence 6676 89999999999885 343 233 889999999999885 3 357889999999999998873 32 233
Q ss_pred hhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 183 SLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 183 ~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
.+++|+.|++++|.+++. ..+..+++|+.|++++|.++....
T Consensus 148 -----~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 148 -----FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp -----GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred -----cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 345789999999999865 567888999999999998876543
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=8e-20 Score=172.85 Aligned_cols=186 Identities=22% Similarity=0.216 Sum_probs=150.7
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCcc-------------ccccCcccccCCCCCcEEe-CCCCccccc
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNY-------------FSGLIPNTFGNLRFLNWLS-PVQNYLMTK 87 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n~l~~~ 87 (327)
.++.|+.|++++|.++ .+|..++.+++|++|++++|. ..+..|..++.+++|+.|+ ++.|.+...
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 6899999999999998 789999999999999997764 4456677888899999998 666654331
Q ss_pred ---cCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccC
Q 040487 88 ---PLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFG 164 (327)
Q Consensus 88 ---~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 164 (327)
.+..+.+. .+. . ..|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus 426 ~~l~l~~n~i~-----~l~-~-~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 426 RSKFLLENSVL-----KME-Y-ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHH-----HHH-H-TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhccccc-----ccC-c-cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 11111111 111 1 269999999999985 675 899999999999999999 7888999999999999999
Q ss_pred CccccccCccccCccccchhhccCCCCCCEEEcCCCcccccC-CccccCccCCcEEecCCCcCCCCCc
Q 040487 165 NNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSI-PSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 165 n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
|.+++ +| .+.. +++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+
T Consensus 496 N~l~~-lp-~l~~-----------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 496 NALEN-VD-GVAN-----------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCC-CG-GGTT-----------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCC-Cc-ccCC-----------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99984 55 5544 457999999999999776 8999999999999999999987654
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.2e-17 Score=162.44 Aligned_cols=118 Identities=27% Similarity=0.306 Sum_probs=51.9
Q ss_pred CcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCccc
Q 040487 41 PNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELK 120 (327)
Q Consensus 41 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (327)
+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++. +|..+..++ +|++|+|++|.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~-----------lp~~~~~l~-~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTE-----------LPAEIKNLS-NLRVLDLSHNRLT 283 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSC-----------CCGGGGGGT-TCCEEECTTSCCS
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcc-----------cChhhhCCC-CCCEEeCcCCcCC
Confidence 333444444455555444444 333333344444444444444422 444444444 4444444444444
Q ss_pred ccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCc
Q 040487 121 GSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPY 173 (327)
Q Consensus 121 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 173 (327)
.+|..+..+++|++|++++|.+. .+|..|..+++|+.|++++|.+++.+|.
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 33444444444444444444443 3344444444444444444444443333
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.3e-17 Score=160.59 Aligned_cols=144 Identities=23% Similarity=0.213 Sum_probs=119.8
Q ss_pred ChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCc
Q 040487 16 PSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLR 95 (327)
Q Consensus 16 p~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~ 95 (327)
|..+. .++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|.++.
T Consensus 217 ~~~~~-~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--------- 284 (727)
T 4b8c_D 217 KDSKY-DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS--------- 284 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS---------
T ss_pred hhhhc-cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc---------
Confidence 44455 8999999999999999 77877889999999999999999 889999999999999999998865
Q ss_pred ccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCC-CCCEEEccCCccccccCcc
Q 040487 96 GFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQ-QLQGLDLFGNNLQGSIPYD 174 (327)
Q Consensus 96 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~ 174 (327)
+|..++.++ +|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+.... ....+++++|.+++.+|..
T Consensus 285 --lp~~~~~l~-~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 285 --LPAELGSCF-QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp --CCSSGGGGT-TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred --cChhhcCCC-CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 788888888 9999999999997 7788899999999999999999988777765432 2234678888888777654
Q ss_pred c
Q 040487 175 L 175 (327)
Q Consensus 175 l 175 (327)
+
T Consensus 361 l 361 (727)
T 4b8c_D 361 R 361 (727)
T ss_dssp -
T ss_pred c
Confidence 3
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1e-15 Score=121.85 Aligned_cols=137 Identities=24% Similarity=0.223 Sum_probs=101.0
Q ss_pred CCCCCCEEEcccCccc-ccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCch
Q 040487 22 TLPNLERLTLSHNKLS-GTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPS 100 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~ 100 (327)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.++. .+|.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~----------~~~~ 89 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG----------GLDM 89 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS----------CCCH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch----------HHHH
Confidence 4477889999998887 56777778888899999998888754 678888888888887777643 2555
Q ss_pred hhhhccccccEEEccCCcccccC-CccccCCCCCcEEEccCCcccCCCc---hhccCCCCCCEEEccCCccccccC
Q 040487 101 LVSNFSASLQEFNAYGCELKGSI-PQEIGNLSGLIVLNLFNNDLIGTIP---KTVGGLQQLQGLDLFGNNLQGSIP 172 (327)
Q Consensus 101 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~ 172 (327)
.+..++ +|++|++++|.++... +..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+. +.|
T Consensus 90 ~~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 90 LAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp HHHHCT-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred HHhhCC-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence 666666 8888888888777432 2567777888888888887775443 36677777777777777765 444
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.9e-16 Score=125.08 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=112.3
Q ss_pred CeEEEccCCCCc-ccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeC
Q 040487 1 MIVINLIQNQLS-GHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSP 79 (327)
Q Consensus 1 L~~L~l~~~~~~-~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 79 (327)
|++|++++|.+. +.+|..+. .+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred CCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 578999999997 67888766 899999999999999954 67889999999999999999778888888999999999
Q ss_pred CCCccccccCCCCCCcccCc--hhhhhccccccEEEccCCcccccCC---ccccCCCCCcEEEccCCccc
Q 040487 80 VQNYLMTKPLAANPLRGFLP--SLVSNFSASLQEFNAYGCELKGSIP---QEIGNLSGLIVLNLFNNDLI 144 (327)
Q Consensus 80 ~~n~l~~~~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~n~~~ 144 (327)
++|.++. ++ ..+..++ +|++|++++|.+....+ ..+..+++|++|++++|.+.
T Consensus 103 s~N~l~~-----------~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKD-----------ISTLEPLKKLE-CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCS-----------SGGGGGGSSCS-CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCc-----------chhHHHHhcCC-CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9998865 33 5677777 99999999999985544 37889999999999999876
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=5.9e-16 Score=120.74 Aligned_cols=130 Identities=21% Similarity=0.211 Sum_probs=105.8
Q ss_pred CCCCCCEEEcccCccc-ccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCch
Q 040487 22 TLPNLERLTLSHNKLS-GTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPS 100 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~ 100 (327)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++ .+|.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~----------~~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG----------GLEV 82 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS----------CTHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc----------hHHH
Confidence 4477999999999988 67788888899999999999988855 678889999999988887643 3666
Q ss_pred hhhhccccccEEEccCCccccc-CCccccCCCCCcEEEccCCcccCCCc---hhccCCCCCCEEEccC
Q 040487 101 LVSNFSASLQEFNAYGCELKGS-IPQEIGNLSGLIVLNLFNNDLIGTIP---KTVGGLQQLQGLDLFG 164 (327)
Q Consensus 101 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~ 164 (327)
.+..++ +|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 83 ~~~~l~-~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCT-TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HhhhCC-CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 666677 899999999998853 33678889999999999999986555 4678899999998763
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=2.7e-15 Score=122.19 Aligned_cols=130 Identities=22% Similarity=0.314 Sum_probs=74.1
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCc-ccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPN-SIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQ 81 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 81 (327)
+++++++++. .+|..+. +++++|++++|.+++..+. .|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 12 ~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4555555554 4554443 2555555555555533332 245555555555555555544455555555555555444
Q ss_pred CccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEE
Q 040487 82 NYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLD 161 (327)
Q Consensus 82 n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 161 (327)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 88 -----------------------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 88 -----------------------------------NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp -----------------------------------CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred -----------------------------------CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 444444444566667777777777777666666666777777777
Q ss_pred ccCCcccccc
Q 040487 162 LFGNNLQGSI 171 (327)
Q Consensus 162 l~~n~~~~~~ 171 (327)
+++|.+++..
T Consensus 133 L~~N~l~c~c 142 (192)
T 1w8a_A 133 LASNPFNCNC 142 (192)
T ss_dssp CTTCCBCCSG
T ss_pred eCCCCccCcC
Confidence 7777776443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=4.4e-15 Score=120.99 Aligned_cols=131 Identities=24% Similarity=0.255 Sum_probs=93.3
Q ss_pred CEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCch--hhhhccccccEEEccCCcccccCCcccc
Q 040487 51 ITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPS--LVSNFSASLQEFNAYGCELKGSIPQEIG 128 (327)
Q Consensus 51 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 128 (327)
++++++++.++ .+|..+.. ++++|++++|.++. ++. .+..++ +|++|++++|.+++..|..+.
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~-----------~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGR-----------ISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFE 75 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCS-----------BCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTT
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCc-----------cCCccccccCC-CCCEEECCCCCCCCcCHhHcC
Confidence 44555555553 34433322 55555555554433 111 244444 666666666666666677889
Q ss_pred CCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCC
Q 040487 129 NLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIP 207 (327)
Q Consensus 129 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~ 207 (327)
.+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..|..+..++ +|++|++++|.+.+..+
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----------SLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-----------TCCEEECTTCCBCCSGG
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-----------CCCEEEeCCCCccCcCc
Confidence 999999999999999988888899999999999999999977777776644 79999999999987544
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.2e-15 Score=117.53 Aligned_cols=110 Identities=19% Similarity=0.269 Sum_probs=71.2
Q ss_pred CCCCCEEEccCcccc-ccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCc
Q 040487 47 ASKLITLNLGYNYFS-GLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQ 125 (327)
Q Consensus 47 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 125 (327)
.++|++|++++|.++ +.+|..+..+++|++|++++|.++. + ..+..++ +|++|++++|.+.+.+|.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~-~~~~~l~-~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----------I-ANLPKLN-KLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-----------C-TTCCCCT-TCCEEECCSSCCCSCTHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-----------c-hhhhcCC-CCCEEECCCCcccchHHH
Confidence 356777777777776 4566666777777777777766644 1 2334444 677777777777655565
Q ss_pred cccCCCCCcEEEccCCcccCC-CchhccCCCCCCEEEccCCcccc
Q 040487 126 EIGNLSGLIVLNLFNNDLIGT-IPKTVGGLQQLQGLDLFGNNLQG 169 (327)
Q Consensus 126 ~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~ 169 (327)
.+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 555677777777777776642 22556667777777777777763
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=118.58 Aligned_cols=127 Identities=24% Similarity=0.298 Sum_probs=69.3
Q ss_pred EEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccc
Q 040487 28 RLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSA 107 (327)
Q Consensus 28 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~ 107 (327)
+++++++.++ .+|..+ .++|++|++++|.++ .+|..|.++++|++|++++|.++. ..+..+..++
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~----------i~~~~f~~l~- 78 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST----------LSNQSFSNMT- 78 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC----------CCTTTTTTCT-
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE----------eCHhHccCCC-
Confidence 4444444444 333332 134555555555554 344445555555555544444432 1122333343
Q ss_pred cccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCcccc
Q 040487 108 SLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQG 169 (327)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 169 (327)
+|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|.+..
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 55555555555554445566677777777777777775555566777777777777777653
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=3.6e-14 Score=113.87 Aligned_cols=63 Identities=22% Similarity=0.105 Sum_probs=37.2
Q ss_pred cccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccc
Q 040487 108 SLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGS 170 (327)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 170 (327)
+|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 455555555555544344455666677777776666644444456667777777777766543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=4.9e-14 Score=114.80 Aligned_cols=125 Identities=24% Similarity=0.292 Sum_probs=61.1
Q ss_pred EEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCC
Q 040487 3 VINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQN 82 (327)
Q Consensus 3 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 82 (327)
+++++++++. .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3445555554 4554432 34555555555555 44445555555555555555555444444555555555555554
Q ss_pred ccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcc
Q 040487 83 YLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDL 143 (327)
Q Consensus 83 ~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 143 (327)
.++. ..+..+..++ +|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 89 ~l~~----------i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRC----------IPPRTFDGLK-SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCB----------CCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCE----------eCHHHhCCCC-CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4432 1222344444 555555555555533333444555555555555544
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=8.6e-14 Score=111.66 Aligned_cols=112 Identities=26% Similarity=0.198 Sum_probs=66.4
Q ss_pred cccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhcc
Q 040487 108 SLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQ 187 (327)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~ 187 (327)
+++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~---------- 98 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK---------- 98 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhC----------
Confidence 5555555555555444444566666666666666666544445566666667777666666333333333
Q ss_pred CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC
Q 040487 188 GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL 230 (327)
Q Consensus 188 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 230 (327)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 99 -l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 99 -LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp -CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred -CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 235667777777666444444566667777777777666544
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=4.1e-14 Score=125.05 Aligned_cols=231 Identities=12% Similarity=0.076 Sum_probs=147.6
Q ss_pred CeEEEccCCCCcc-------------------cCChhhhcC--------CCCCCEEEcccCcccccCCcccccCCCCCEE
Q 040487 1 MIVINLIQNQLSG-------------------HLPSTMGCT--------LPNLERLTLSHNKLSGTIPNSIINASKLITL 53 (327)
Q Consensus 1 L~~L~l~~~~~~~-------------------~lp~~~~~~--------l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 53 (327)
|++|||++|++.. .+|...+.. +++|+.|++.+ .++.....+|.+|++|+.+
T Consensus 51 L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l 129 (329)
T 3sb4_A 51 LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKIC 129 (329)
T ss_dssp CCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEE
T ss_pred CeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceE
Confidence 6789999988761 345555556 88888888888 7776666778888888888
Q ss_pred EccCccccccCcccccCCCCCcEEeCCCCcccc--ccCCCCCC--------------cccCchhhhhc---cccccEEEc
Q 040487 54 NLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMT--KPLAANPL--------------RGFLPSLVSNF---SASLQEFNA 114 (327)
Q Consensus 54 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~l~~~~~--------------~~~~~~~~~~~---~~~L~~L~l 114 (327)
++.+|.+....+.+|..+.++..+....+.... ..+....+ .+.++..+... ..+++.+.+
T Consensus 130 ~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~ 209 (329)
T 3sb4_A 130 QIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTI 209 (329)
T ss_dssp EBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEE
T ss_pred EcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEE
Confidence 888888876666778887777777665532100 00000000 00111111111 124455555
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCC-
Q 040487 115 YGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLR- 193 (327)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~- 193 (327)
.+.-...........+++|+.+++++|.+......+|..+.+|+.+++.+| ++...+.+|.. |++|+
T Consensus 210 ~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~-----------~~~L~~ 277 (329)
T 3sb4_A 210 EGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN-----------CGRLAG 277 (329)
T ss_dssp EECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-----------CTTCCE
T ss_pred eeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhC-----------ChhccE
Confidence 443211111111123688999999998888666778889999999999887 65344444544 45688
Q ss_pred EEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeC
Q 040487 194 ELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNL 260 (327)
Q Consensus 194 ~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l 260 (327)
.+++.+ .++...+.+|..+++|+.+++++|.++.... .+|.++++|+.+..
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~---------------~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD---------------ELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT---------------TTTCTTCCCCEEEC
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch---------------hhhcCCcchhhhcc
Confidence 888887 6665667888899999999998888876554 34456677777653
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=2.4e-14 Score=126.55 Aligned_cols=254 Identities=12% Similarity=0.082 Sum_probs=153.4
Q ss_pred CCCCCEEEcccCcccccCCccccc-CCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh
Q 040487 23 LPNLERLTLSHNKLSGTIPNSIIN-ASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL 101 (327)
Q Consensus 23 l~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~ 101 (327)
+++++.|.++++- .......+.. +++|++|+|++|++.. ....-+.++.++.+.+..+.+.. ..+.+..+..
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~I~~-----~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANFVPA-----YAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTEECT-----TTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEE-ecCccccccccccccccccccCH-----HHhccccccc
Confidence 5678888888752 2111223344 7889999999998871 11111122234444544443211 1111111111
Q ss_pred hhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCcc----ccccCccccC
Q 040487 102 VSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNL----QGSIPYDLCN 177 (327)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~----~~~~~~~l~~ 177 (327)
...+. +|+.+++.+ .++..-..+|..+++|+.+++.+|.+....+.+|....++..+....+.. ...-..++..
T Consensus 97 ~~g~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 11155 999999998 77766667899999999999999988767777888777776666554221 1011112222
Q ss_pred ccccc--------------------------hhhc-------------cCCCCCCEEEcCCCcccccCCccccCccCCcE
Q 040487 178 LKRLY--------------------------SLLL-------------QGLVSLRELYLDSNKLSSSIPSSFWNLEYILQ 218 (327)
Q Consensus 178 ~~~L~--------------------------~l~l-------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 218 (327)
+..|+ .+.+ ..+++|+.+++++|.++.....+|..+.+|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 22222 1111 12778999999988888666677888889999
Q ss_pred EecCCCcCCCCCchhhhcccccccccCccccCCCCCCC-eEeCcCCcceeeCCCC--CCCCCcceecccCCCCCCCCCCC
Q 040487 219 IDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLK-QLNLSYNRLEGEIPIK--GPFRNFSTQSCFGNYALGSPPIL 295 (327)
Q Consensus 219 L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~--~~~~~L~~l~l~~n~~l~~~p~~ 295 (327)
+++.+| ++.... .+|.++++|+ .+++.+ .++ .++.. ..|++|+.+++.+| .+..++..
T Consensus 255 l~l~~n-i~~I~~---------------~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~ 315 (329)
T 3sb4_A 255 IKLPHN-LKTIGQ---------------RVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGD-KITTLGDE 315 (329)
T ss_dssp EECCTT-CCEECT---------------TTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSS-CCCEECTT
T ss_pred EECCcc-cceehH---------------HHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCC-ccCccchh
Confidence 999887 543332 4455677777 777776 554 33322 56777777777776 46666666
Q ss_pred CCCCCCCCC
Q 040487 296 QVPPYKEDN 304 (327)
Q Consensus 296 ~~~~c~~~~ 304 (327)
.+..|....
T Consensus 316 aF~~~~~L~ 324 (329)
T 3sb4_A 316 LFGNGVPSK 324 (329)
T ss_dssp TTCTTCCCC
T ss_pred hhcCCcchh
Confidence 566776543
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=3e-14 Score=114.25 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=105.6
Q ss_pred CCCCCCEEEcccCcccccCCcccccCC-CCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCch
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINAS-KLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPS 100 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~ 100 (327)
.+.+|++|++++|.++ .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.++. +|.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-----------~~~ 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-----------IGE 81 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-----------ECS
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-----------cCc
Confidence 6889999999999998 4554 44444 999999999999864 678899999999999888755 443
Q ss_pred -hhhhccccccEEEccCCcccccCCc--cccCCCCCcEEEccCCcccCCCch----hccCCCCCCEEEccCCccc
Q 040487 101 -LVSNFSASLQEFNAYGCELKGSIPQ--EIGNLSGLIVLNLFNNDLIGTIPK----TVGGLQQLQGLDLFGNNLQ 168 (327)
Q Consensus 101 -~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~ 168 (327)
.+..++ +|++|++++|.+. .++. .+..+++|++|++++|.+.. .|. .+..+++|+.|+++.|...
T Consensus 82 ~~~~~l~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 82 GLDQALP-DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CHHHHCT-TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred chhhcCC-CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 346777 9999999999986 4554 78889999999999999984 454 3788999999999998875
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=3e-16 Score=128.52 Aligned_cols=164 Identities=20% Similarity=0.206 Sum_probs=116.8
Q ss_pred CCCCCCEEEcccCcccccCCc------ccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCc
Q 040487 22 TLPNLERLTLSHNKLSGTIPN------SIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLR 95 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~ 95 (327)
....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.++.
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~--------- 84 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK--------- 84 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS---------
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc---------
Confidence 456677777777777766655 78888889999998888875 66 78888889999988888754
Q ss_pred ccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCc-hhccCCCCCCEEEccCCccccccCcc
Q 040487 96 GFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIP-KTVGGLQQLQGLDLFGNNLQGSIPYD 174 (327)
Q Consensus 96 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~ 174 (327)
+|..+..++ +|++|++++|.+.+ ++ .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+++.+|..
T Consensus 85 --l~~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 85 --IENLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp --CSSHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred --ccchhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence 566666666 89999999988875 34 57778889999999998874322 46788899999999999887554432
Q ss_pred ccCccccchhhccCCCCCCEEEcCCCcccc
Q 040487 175 LCNLKRLYSLLLQGLVSLRELYLDSNKLSS 204 (327)
Q Consensus 175 l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~ 204 (327)
..........+..+++|+.|+ ++.++.
T Consensus 160 -~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 160 -NATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp -TTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred -cchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 000111122234466788776 666653
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=5.8e-14 Score=112.61 Aligned_cols=138 Identities=18% Similarity=0.124 Sum_probs=96.1
Q ss_pred ccccCCCCCEEEccCccccccCcccccCCC-CCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccc
Q 040487 43 SIINASKLITLNLGYNYFSGLIPNTFGNLR-FLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKG 121 (327)
Q Consensus 43 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 121 (327)
.+..+.+|++|++++|.++ .++. +..+. +|++|++++|.+++ + ..+..++ +|++|++++|.+..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-----------~-~~l~~l~-~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-----------L-DGFPLLR-RLKTLLVNNNRICR 78 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-----------E-CCCCCCS-SCCEEECCSSCCCE
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-----------c-cccccCC-CCCEEECCCCcccc
Confidence 4567788888888888887 3444 44444 88888888888765 2 2344555 88888888888885
Q ss_pred cCCccccCCCCCcEEEccCCcccCCCch--hccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCC
Q 040487 122 SIPQEIGNLSGLIVLNLFNNDLIGTIPK--TVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDS 199 (327)
Q Consensus 122 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~ 199 (327)
..+..+..+++|++|++++|.+. .++. .+..+++|+.|++++|.++ ..|.. +...+..+++|+.|++++
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~-------~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHY-------RLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTH-------HHHHHHHCTTCSEETTEE
T ss_pred cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhH-------HHHHHHHCCccceeCCCc
Confidence 44444577888888888888886 4554 6778888888888888887 44432 001123355788888888
Q ss_pred Ccccc
Q 040487 200 NKLSS 204 (327)
Q Consensus 200 n~l~~ 204 (327)
|...+
T Consensus 150 n~~~~ 154 (176)
T 1a9n_A 150 VKLKE 154 (176)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 87653
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=4.7e-12 Score=114.70 Aligned_cols=236 Identities=11% Similarity=0.060 Sum_probs=140.1
Q ss_pred CChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCC
Q 040487 15 LPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPL 94 (327)
Q Consensus 15 lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~ 94 (327)
++...+.. .+|+.+.+..+ ++.....+|.++ +|+.+.+.. .+......+|.++.+|+.+++..|.++.
T Consensus 127 I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-------- 194 (401)
T 4fdw_A 127 IPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-------- 194 (401)
T ss_dssp ECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE--------
T ss_pred ehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE--------
Confidence 33443424 36777777665 554555666664 678887764 5554555677788888888877776655
Q ss_pred cccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCcc
Q 040487 95 RGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYD 174 (327)
Q Consensus 95 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 174 (327)
++....... +|+.+.+..+ +...-...|..+++|+.+.+..+ +......+|.. .+|+.+.+.. .++..-..+
T Consensus 195 ---I~~~aF~~~-~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~a 266 (401)
T 4fdw_A 195 ---LPASTFVYA-GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRA 266 (401)
T ss_dssp ---ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTT
T ss_pred ---echhhEeec-ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhH
Confidence 333322333 7777777644 44444556777777887777654 44344455555 6777777743 233222333
Q ss_pred ccCccccchhhccCCCCCCEEEcCCCccc-----ccCCccccCccCCcEEecCCCcCCCCCchhhhcccccccccCcccc
Q 040487 175 LCNLKRLYSLLLQGLVSLRELYLDSNKLS-----SSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVI 249 (327)
Q Consensus 175 l~~~~~L~~l~l~~~~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l 249 (327)
|. +|++|+.+++.++.+. .....+|..+++|+.+.+.++ ++.... .+|
T Consensus 267 F~-----------~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~---------------~aF 319 (401)
T 4fdw_A 267 FY-----------YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQ---------------GLL 319 (401)
T ss_dssp TT-----------TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECT---------------TTT
T ss_pred hh-----------CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhh---------------hhh
Confidence 33 3556777777766554 244566777888888887743 433222 445
Q ss_pred CCCCCCCeEeCcCCcceeeCCCC--CCCCCcceecccCCCCCCCCCCCCCCCCC
Q 040487 250 GALPHLKQLNLSYNRLEGEIPIK--GPFRNFSTQSCFGNYALGSPPILQVPPYK 301 (327)
Q Consensus 250 ~~~~~L~~L~l~~n~l~~~~~~~--~~~~~L~~l~l~~n~~l~~~p~~~~~~c~ 301 (327)
.++++|+.+++..+ ++ .+... ..+ +|+.+.+.+| ....++...+..|+
T Consensus 320 ~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFP 369 (401)
T ss_dssp TTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSC
T ss_pred cCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCC
Confidence 56777888887554 44 23322 455 7888888777 34444444444454
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.1e-15 Score=125.07 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=96.5
Q ss_pred cccCCCCCEEEccCccccccCcc------cccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCC
Q 040487 44 IINASKLITLNLGYNYFSGLIPN------TFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGC 117 (327)
Q Consensus 44 l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 117 (327)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.++. +| .+..++ +|++|++++|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-----------l~-~~~~l~-~L~~L~l~~n 80 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-----------IS-SLSGME-NLRILSLGRN 80 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-----------CC-CHHHHT-TCCEEEEEEE
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-----------cc-ccccCC-CCCEEECCCC
Confidence 34455556666666655555444 67777777777777776644 44 555565 7777777777
Q ss_pred cccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccC-ccccCccccchhhccCCCCCCEEE
Q 040487 118 ELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIP-YDLCNLKRLYSLLLQGLVSLRELY 196 (327)
Q Consensus 118 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~l~l~~~~~L~~L~ 196 (327)
.+. .+|..+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+++..+ ..+ ..+++|++|+
T Consensus 81 ~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l-----------~~l~~L~~L~ 146 (198)
T 1ds9_A 81 LIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKL-----------AALDKLEDLL 146 (198)
T ss_dssp EEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHH-----------TTTTTCSEEE
T ss_pred Ccc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHH-----------hcCCCCCEEE
Confidence 776 455555556777777777777764 33 46667777777777777662111 122 2344677777
Q ss_pred cCCCcccccCCc----------cccCccCCcEEecCCCcCCC
Q 040487 197 LDSNKLSSSIPS----------SFWNLEYILQIDLSSNSLSG 228 (327)
Q Consensus 197 l~~n~l~~~~~~----------~l~~l~~L~~L~ls~n~l~~ 228 (327)
+++|.+.+..|. .+..+++|+.|+ ++.++.
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 777777655443 255677777765 555543
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.7e-12 Score=103.40 Aligned_cols=103 Identities=25% Similarity=0.317 Sum_probs=48.4
Q ss_pred CEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCch-hhhhc
Q 040487 27 ERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPS-LVSNF 105 (327)
Q Consensus 27 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~-~~~~~ 105 (327)
++++++++.++ .+|..+ .++|++|++++|.+++..|..|.++++|++|++++|+++. ++. .+..+
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------l~~~~f~~l 77 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-----------LPAGVFDKL 77 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-----------CCTTTTTTC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-----------cChhhccCC
Confidence 34444444444 233332 1344444444444444334444444455555544444432 221 22333
Q ss_pred cccccEEEccCCcccccCCccccCCCCCcEEEccCCccc
Q 040487 106 SASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLI 144 (327)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 144 (327)
+ +|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 78 ~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 78 T-QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp T-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 3 4555555555555433444556666666666666554
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=2.6e-12 Score=102.71 Aligned_cols=103 Identities=23% Similarity=0.284 Sum_probs=60.9
Q ss_pred CEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchh-hhhc
Q 040487 27 ERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSL-VSNF 105 (327)
Q Consensus 27 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~-~~~~ 105 (327)
+.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|+++. +|.. +..+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-----------IPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-----------cChhHhCCc
Confidence 45666666665 4454432 556666666666665555556666666666666665543 3332 3444
Q ss_pred cccccEEEccCCcccccCCccccCCCCCcEEEccCCccc
Q 040487 106 SASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLI 144 (327)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 144 (327)
+ +|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 81 ~-~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 81 T-QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp T-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c-hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 4 6666666666666444444667777777777777765
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=3.4e-14 Score=127.50 Aligned_cols=171 Identities=16% Similarity=0.081 Sum_probs=92.3
Q ss_pred CCCCCEEEccCccccccCcccccC-----CCCCcEEeCCCCccccccCCCCCCcccCchhhh-hccccccEEEccCCccc
Q 040487 47 ASKLITLNLGYNYFSGLIPNTFGN-----LRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVS-NFSASLQEFNAYGCELK 120 (327)
Q Consensus 47 l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 120 (327)
++.|++|++++|.++......+.. .++|++|++++|.++.. ....+. .+. +|+.|++++|.++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~----------~~~~l~~~L~-~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA----------GLRTLLPVFL-RARKLGLQLNSLG 139 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH----------HHHHTHHHHH-TEEEEECCSSCCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH----------HHHHHHHHHH-hccHhhcCCCCCC
Confidence 356777777777766433322222 25777777776665331 111121 223 6777777777665
Q ss_pred ccCCccc-----cCCCCCcEEEccCCcccCC----CchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCC
Q 040487 121 GSIPQEI-----GNLSGLIVLNLFNNDLIGT----IPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVS 191 (327)
Q Consensus 121 ~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~ 191 (327)
......+ ...++|++|++++|.+++. ++..+...++|+.|++++|.+++.....+.. .+..+++
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-------~L~~~~~ 212 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-------QLDRNRQ 212 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-------HGGGCSC
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-------HHhcCCC
Confidence 3322222 2346677777777776532 2333455667777777777765332111111 1122345
Q ss_pred CCEEEcCCCccccc----CCccccCccCCcEEecCCCcCCCCCchhhh
Q 040487 192 LRELYLDSNKLSSS----IPSSFWNLEYILQIDLSSNSLSGSLLPHIQ 235 (327)
Q Consensus 192 L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~ 235 (327)
|++|++++|.+++. ++..+...++|+.|++++|.+++.....+.
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 77777777777643 223334456777777777777655544444
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=3.1e-14 Score=127.77 Aligned_cols=174 Identities=19% Similarity=0.143 Sum_probs=118.3
Q ss_pred CCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccc-cCCCCCcEEEccCCcccCCCch
Q 040487 71 LRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEI-GNLSGLIVLNLFNNDLIGTIPK 149 (327)
Q Consensus 71 l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~ 149 (327)
++.|++|++++|.++..+ ...+...+.....+|+.|++++|.++......+ ..+++|++|++++|.+++....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~------~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK------CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHH------HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred HhhCCEEEecCCCCCHHH------HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 468999999988875411 001222222222389999999999874322222 2356899999999998754443
Q ss_pred hc-----cCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccC----CccccCccCCcEEe
Q 040487 150 TV-----GGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSI----PSSFWNLEYILQID 220 (327)
Q Consensus 150 ~~-----~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~ 220 (327)
.+ ...++|+.|++++|.++......+.. .+..+++|++|++++|.+++.. +..+...++|+.|+
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-------~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-------GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-------HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHH-------HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence 33 34688999999999987432222211 1123567999999999998643 45566778999999
Q ss_pred cCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCcceee
Q 040487 221 LSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEGE 268 (327)
Q Consensus 221 ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~~ 268 (327)
+++|.+++.....+. ..+...++|++|++++|.+++.
T Consensus 218 Ls~N~i~~~g~~~l~-----------~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 218 VAYNGAGDTAALALA-----------RAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CCSSCCCHHHHHHHH-----------HHHHHCSSCCEEECTTSSCCHH
T ss_pred CCCCCCCHHHHHHHH-----------HHHHhCCCCCEEeccCCCCCHH
Confidence 999999876555554 3344568899999999998753
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=1.2e-11 Score=98.52 Aligned_cols=109 Identities=29% Similarity=0.292 Sum_probs=76.4
Q ss_pred cccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhcc
Q 040487 108 SLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQ 187 (327)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~ 187 (327)
..+.++++++.++ .+|..+ .+++++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~---------- 76 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK---------- 76 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT----------
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC----------
Confidence 4566777777766 345444 267778888888877666777777888888888888877433333444
Q ss_pred CCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCC
Q 040487 188 GLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSL 230 (327)
Q Consensus 188 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 230 (327)
+++|++|++++|.+++..+..+..+++|+.|++++|.++...
T Consensus 77 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 77 -LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred -CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 346788888888888655566778888888888888877553
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=4.2e-11 Score=108.41 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=161.2
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
|+.+.+..+ +. .++...+.. .+|+.+.+.. .++.....+|.+|.+|+.+++.+|.++.....+|. ..+|+.+.+.
T Consensus 137 L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 137 IAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred ccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 455666555 55 455555534 5799999986 66656678899999999999999998855556676 6899999987
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEE
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGL 160 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 160 (327)
.+ ++. .-...|..+. +|+.+.+..+ ++..-...|.. .+|+.+.+. +.+......+|..+++|+.+
T Consensus 212 ~~-l~~----------I~~~aF~~~~-~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 212 VT-LKE----------IGSQAFLKTS-QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEV 276 (401)
T ss_dssp TT-CCE----------ECTTTTTTCT-TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEE
T ss_pred Cc-hhe----------ehhhHhhCCC-CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEE
Confidence 44 332 1233455565 8999999874 44344455666 789999995 44555566788899999999
Q ss_pred EccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhccccc
Q 040487 161 DLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQ 240 (327)
Q Consensus 161 ~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l 240 (327)
.+.++.+.... ...+..-.+.+|++|+.+++.. .++.....+|..+.+|+.+.+..+ ++....
T Consensus 277 ~l~~~~~~~~~------~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~--------- 339 (401)
T 4fdw_A 277 TTYGSTFNDDP------EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF--------- 339 (401)
T ss_dssp EEESSCCCCCT------TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT---------
T ss_pred EeCCccccCCc------ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH---------
Confidence 99887664110 0011122334566788888884 466566678888899999988665 433222
Q ss_pred ccccCccccCCCCCCCeEeCcCCcceeeCCCC-CCCC-CcceecccCC
Q 040487 241 SLRKNSQVIGALPHLKQLNLSYNRLEGEIPIK-GPFR-NFSTQSCFGN 286 (327)
Q Consensus 241 ~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~-~L~~l~l~~n 286 (327)
.+|..+ +|+.+++.+|.+....... ..++ .++.+++..+
T Consensus 340 ------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 340 ------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp ------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred ------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 445566 7888888888766432222 3343 5667776655
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=3e-11 Score=96.53 Aligned_cols=107 Identities=27% Similarity=0.230 Sum_probs=68.7
Q ss_pred ccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccC
Q 040487 109 LQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQG 188 (327)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~ 188 (327)
-+.++++++.++ .+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~----------- 79 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK----------- 79 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC-----------
Confidence 345666666665 3444433 66777777777777666666777777777777777776322222333
Q ss_pred CCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCC
Q 040487 189 LVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGS 229 (327)
Q Consensus 189 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 229 (327)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 33577777777777754444577777888888888877643
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.21 E-value=4.9e-10 Score=101.33 Aligned_cols=277 Identities=12% Similarity=0.023 Sum_probs=138.1
Q ss_pred CChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCcc--ccccCCCC
Q 040487 15 LPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYL--MTKPLAAN 92 (327)
Q Consensus 15 lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l--~~~~l~~~ 92 (327)
+...-+..+.+|+.+.+.. .++.....+|.++.+|+.+++.++ ++.....+|.++.+|+.+.+..+-. ....+.++
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~ 139 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGC 139 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecc
Confidence 3333344778888888864 355455667888888888888654 4434456677788887776643311 00001111
Q ss_pred CC---------cccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEcc
Q 040487 93 PL---------RGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLF 163 (327)
Q Consensus 93 ~~---------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 163 (327)
.. ...-...+..+. +|+.+.+.++. .......|..+.+|+.+.+..+ +......+|.....|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~-~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCE-SLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCT-TCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccccCccccccchhhhcccC-CCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 10 001112233333 55555554432 1122334555555555555443 222223344445555544443
Q ss_pred CCccccccCccccCccccchhh------------ccCCCCCCEEEcCCCcccccCCccccCccCCcEEecCCCcCCCCCc
Q 040487 164 GNNLQGSIPYDLCNLKRLYSLL------------LQGLVSLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLL 231 (327)
Q Consensus 164 ~n~~~~~~~~~l~~~~~L~~l~------------l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 231 (327)
.+... +.........|+.+. +..+..++.+.+..+... .....+..+..++.+....+.+.....
T Consensus 217 ~~~~~--i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F 293 (394)
T 4fs7_A 217 NSLYY--LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTF 293 (394)
T ss_dssp TTCCE--ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTT
T ss_pred CCceE--eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccc
Confidence 32211 111111112222221 234555666666554332 333445555555555555544443344
Q ss_pred hhhhcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCCC--CCCCCcceecccCCCCCCCCCCCCCCCCCCC
Q 040487 232 PHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIK--GPFRNFSTQSCFGNYALGSPPILQVPPYKED 303 (327)
Q Consensus 232 ~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~L~~l~l~~n~~l~~~p~~~~~~c~~~ 303 (327)
....+|+.+.+.++ ..+|..+.+|+.+++..+ ++ .+... ..|++|+.+.+..+ +..+....+..|...
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINL 368 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTC
T ss_pred cccccccccccccccceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCC
Confidence 44455555555444 455667777777777643 43 33322 55677777777655 455555556667653
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=8.1e-11 Score=104.54 Aligned_cols=103 Identities=20% Similarity=0.143 Sum_probs=80.0
Q ss_pred EEEccCC-CCcccCChhhhcCCCCCCEEEccc-CcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 3 VINLIQN-QLSGHLPSTMGCTLPNLERLTLSH-NKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 3 ~L~l~~~-~~~~~lp~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
.++.+++ ++. .+|. +. .+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3567777 777 6888 66 788899999986 88887666778888999999999998887777788889999999988
Q ss_pred CCccccccCCCCCCcccCchhhhhccccccEEEccCCccc
Q 040487 81 QNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELK 120 (327)
Q Consensus 81 ~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (327)
+|.++. +|..+.... +|+.|++.+|.+.
T Consensus 89 ~N~l~~-----------~~~~~~~~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALES-----------LSWKTVQGL-SLQELVLSGNPLH 116 (347)
T ss_dssp SSCCSC-----------CCSTTTCSC-CCCEEECCSSCCC
T ss_pred CCccce-----------eCHHHcccC-CceEEEeeCCCcc
Confidence 888765 444433333 4888888888765
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=8.1e-10 Score=98.01 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=29.5
Q ss_pred cccEEEccC-CcccccCCccccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccc
Q 040487 108 SLQEFNAYG-CELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQ 168 (327)
Q Consensus 108 ~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 168 (327)
+|+.|+|++ |.+....+..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|.++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 455555543 4444333344444555555555555554444444444555555555555444
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=2.3e-10 Score=101.94 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=101.8
Q ss_pred ccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCC
Q 040487 68 FGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTI 147 (327)
Q Consensus 68 l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 147 (327)
..++++|+.|.+.........++... .+.+...+..++ +|+.|++.+|.-. .++. + .+++|++|++..+.+....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~-~~~L~~ll~~~P-~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIE-QVDLSPVLDAMP-LLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCB-CCBCHHHHHTCT-TCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred hhhcchhhheeecCcchhhccccccc-ccCHHHHHhcCC-CCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence 44566777776654322111111100 112444555555 8888888776311 2332 3 3778888888887765433
Q ss_pred chhcc--CCCCCCEEEccCC--ccccccCccccCccccch-hhccCCCCCCEEEcCCCcccccCCcccc---CccCCcEE
Q 040487 148 PKTVG--GLQQLQGLDLFGN--NLQGSIPYDLCNLKRLYS-LLLQGLVSLRELYLDSNKLSSSIPSSFW---NLEYILQI 219 (327)
Q Consensus 148 ~~~~~--~~~~L~~L~l~~n--~~~~~~~~~l~~~~~L~~-l~l~~~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L 219 (327)
...+. .+++|+.|+++.+ ...+.. .+ ..+.. +....+++|++|++.+|.+++..+..+. .+++|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~---~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L 284 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDG--DM---NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCS--CG---GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE
T ss_pred HHHHHHccCCCCcEEEEeccccccccch--hH---HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE
Confidence 33333 6788888888532 111110 01 01111 1113477889999988888754333332 47788999
Q ss_pred ecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCccee
Q 040487 220 DLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLEG 267 (327)
Q Consensus 220 ~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~~ 267 (327)
+++.|.+++..+..+. ..+..+++|+.|++++|.+++
T Consensus 285 dLs~n~L~d~G~~~L~-----------~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 285 DISAGVLTDEGARLLL-----------DHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp ECCSSCCBHHHHHHHH-----------TTHHHHTTCSEEECCSBBCCH
T ss_pred ECCCCCCChHHHHHHH-----------hhcccCCcceEEECCCCcCCH
Confidence 9988888775554443 222345788888888887764
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.03 E-value=9.1e-09 Score=92.95 Aligned_cols=253 Identities=13% Similarity=0.072 Sum_probs=125.7
Q ss_pred CeEEEccCCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCc---------------------c
Q 040487 1 MIVINLIQNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYN---------------------Y 59 (327)
Q Consensus 1 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n---------------------~ 59 (327)
|+.+.+..+ ++ .++..-+..+.+|+.+++..+ ++.....+|.++.+|+.+.+..+ .
T Consensus 73 L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~ 149 (394)
T 4fs7_A 73 VTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEG 149 (394)
T ss_dssp EEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTT
T ss_pred ceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCcc
Confidence 345566433 44 455555558899999999765 44344566777777776655432 1
Q ss_pred ccccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEcc
Q 040487 60 FSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLF 139 (327)
Q Consensus 60 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (327)
.......+|.++++|+.+.+..+.. . .-...+..+. +|+.+.+..+ +.......+..+..|+.+.+.
T Consensus 150 ~~~i~~~aF~~c~~L~~i~l~~~~~-~----------I~~~~F~~c~-~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 150 VTVIGDEAFATCESLEYVSLPDSME-T----------LHNGLFSGCG-KLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTTCC-E----------ECTTTTTTCT-TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccchhhhcccCCCcEEecCCccc-e----------eccccccCCC-CceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 1111234577778888888754421 1 0112233333 5666555443 222223344444455444443
Q ss_pred CCcc---------------------cCCCchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcC
Q 040487 140 NNDL---------------------IGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLD 198 (327)
Q Consensus 140 ~n~~---------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~ 198 (327)
.+.. ......++..+..++.+.+..+... .....+.. +..++.+...
T Consensus 217 ~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~-----------~~~l~~~~~~ 284 (394)
T 4fs7_A 217 NSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYN-----------CSGLKKVIYG 284 (394)
T ss_dssp TTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTT-----------CTTCCEEEEC
T ss_pred CCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eecccccc-----------ccccceeccC
Confidence 3221 1112233444555555555443322 22223333 3334444443
Q ss_pred CCcccccCCccccCccCCcEEecCCC--cCCCCCchhhhcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCC
Q 040487 199 SNKLSSSIPSSFWNLEYILQIDLSSN--SLSGSLLPHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPI 271 (327)
Q Consensus 199 ~n~l~~~~~~~l~~l~~L~~L~ls~n--~l~~~~~~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~ 271 (327)
...+. ..++..+.+|+.+.+..+ .+....+....+|+.+.+.+. ..+|.++.+|+.+++..+ ++ .+..
T Consensus 285 ~~~i~---~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~ 359 (394)
T 4fs7_A 285 SVIVP---EKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LR-KIGA 359 (394)
T ss_dssp SSEEC---TTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CC-EECT
T ss_pred ceeec---cccccccccccccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-cc-EehH
Confidence 33221 123344445555554433 111122222334444444333 356778889999998766 54 3433
Q ss_pred C--CCCCCcceecccCC
Q 040487 272 K--GPFRNFSTQSCFGN 286 (327)
Q Consensus 272 ~--~~~~~L~~l~l~~n 286 (327)
. ..|++|+.+.+..+
T Consensus 360 ~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTBTTCTTCCEEEEEGG
T ss_pred HHhhCCCCCCEEEECCC
Confidence 3 67888888888765
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=1.5e-10 Score=103.04 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=103.1
Q ss_pred cccCCCCCEEEccCcccc---------ccCcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEc
Q 040487 44 IINASKLITLNLGYNYFS---------GLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNA 114 (327)
Q Consensus 44 l~~l~~L~~L~L~~n~l~---------~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l 114 (327)
...+++|+.|.+.+.... +.+...+..+++|+.|+++++.-.. ++. + ..+ +|+.|++
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-----------l~~-~-~~~-~L~~L~L 200 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-----------IGK-K-PRP-NLKSLEI 200 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-----------CCS-C-BCT-TCSEEEE
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-----------ecc-c-cCC-CCcEEEE
Confidence 345667777777543221 1233445667788888876652100 111 1 133 7888888
Q ss_pred cCCcccccCCcccc--CCCCCcEEEccC--CcccC-----CCchhc--cCCCCCCEEEccCCccccccCccccCccccch
Q 040487 115 YGCELKGSIPQEIG--NLSGLIVLNLFN--NDLIG-----TIPKTV--GGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYS 183 (327)
Q Consensus 115 ~~~~~~~~~~~~~~--~l~~L~~L~l~~--n~~~~-----~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 183 (327)
..|.+.......++ .+++|+.|+++. +...+ .+...+ ..+++|+.|++.+|.++...+..+...
T Consensus 201 ~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a----- 275 (362)
T 2ra8_A 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES----- 275 (362)
T ss_dssp ECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-----
T ss_pred ecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-----
Confidence 87776543323333 578888888753 22111 111222 247899999999988875443333321
Q ss_pred hhccCCCCCCEEEcCCCccccc----CCccccCccCCcEEecCCCcCCCCCchhhh
Q 040487 184 LLLQGLVSLRELYLDSNKLSSS----IPSSFWNLEYILQIDLSSNSLSGSLLPHIQ 235 (327)
Q Consensus 184 l~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~ 235 (327)
..+++|++|+++.|.+++. ++..+..+++|+.|++++|.+++.....+.
T Consensus 276 ---~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 276 ---DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp ---SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred ---ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 1356899999999999864 333445678999999999998876655554
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.90 E-value=1.3e-07 Score=85.34 Aligned_cols=247 Identities=12% Similarity=0.110 Sum_probs=121.1
Q ss_pred CCC-CCCEEEcccCcccccCCcccccCCCCCEEEccCcc---ccccCcccccCCCCCcEEeCCCCccccccCCCCCCccc
Q 040487 22 TLP-NLERLTLSHNKLSGTIPNSIINASKLITLNLGYNY---FSGLIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGF 97 (327)
Q Consensus 22 ~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~ 97 (327)
.++ .|+.+.+..+ ++.....+|.++.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++. .
T Consensus 61 ~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~----------I 128 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE----------I 128 (394)
T ss_dssp TCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE----------E
T ss_pred CCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce----------e
Confidence 553 4888888754 555566778888888888887653 44444466777777777765432 111 0
Q ss_pred CchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCc---------------------ccCCCchhccCCCC
Q 040487 98 LPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNND---------------------LIGTIPKTVGGLQQ 156 (327)
Q Consensus 98 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~---------------------~~~~~~~~~~~~~~ 156 (327)
-...+..+. +|+.+.+...- ...-...+..+.+|+.+.+..+- +......+|.....
T Consensus 129 ~~~aF~~c~-~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 129 DSEAFHHCE-ELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFA 206 (394)
T ss_dssp CTTTTTTCT-TCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTT
T ss_pred hhhhhhhhc-cccccccccee-eeecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccc
Confidence 111222333 55555554321 11222334444445544443321 11112233344444
Q ss_pred CCEEEccCCccccccCccc--------------------------cCccccchhhccCCCCCCEEEcCCCcccccCCccc
Q 040487 157 LQGLDLFGNNLQGSIPYDL--------------------------CNLKRLYSLLLQGLVSLRELYLDSNKLSSSIPSSF 210 (327)
Q Consensus 157 L~~L~l~~n~~~~~~~~~l--------------------------~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~~~l 210 (327)
++.......... .....+ .....+..-.+.+|..|+.+.+..+... ....++
T Consensus 207 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF 284 (394)
T 4gt6_A 207 LSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAF 284 (394)
T ss_dssp CCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTT
T ss_pred cceecccccccc-cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCccc
Confidence 444433221111 000000 0000111112345566777766554332 444556
Q ss_pred cCccCCcEEecCCC--cCCCCCchhhhcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCCC--CCCCCccee
Q 040487 211 WNLEYILQIDLSSN--SLSGSLLPHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIK--GPFRNFSTQ 281 (327)
Q Consensus 211 ~~l~~L~~L~ls~n--~l~~~~~~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~L~~l 281 (327)
..+++|+.+.+... .+....+....+|+.+.+..+ ..+|.++.+|+.+.+..+ ++ .+... ..|++|+.+
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNI 362 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEE
T ss_pred ccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEE
Confidence 66677777776533 122233333445666666544 456667777777777543 33 23322 556777777
Q ss_pred cccCC
Q 040487 282 SCFGN 286 (327)
Q Consensus 282 ~l~~n 286 (327)
.+.++
T Consensus 363 ~~~~~ 367 (394)
T 4gt6_A 363 EYSGS 367 (394)
T ss_dssp EESSC
T ss_pred EECCc
Confidence 77666
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.88 E-value=9.4e-08 Score=86.25 Aligned_cols=263 Identities=9% Similarity=0.062 Sum_probs=130.0
Q ss_pred CChhhhcCCCCCCEEEcccCc---ccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCccc--cccC
Q 040487 15 LPSTMGCTLPNLERLTLSHNK---LSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYLM--TKPL 89 (327)
Q Consensus 15 lp~~~~~~l~~L~~L~l~~~~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~l 89 (327)
+...-+.++.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ ++.....+|..+.+|+.+.+..+-.. ....
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F 156 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMF 156 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTT
T ss_pred EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeeeecccce
Confidence 444444588999999987753 55445667778888887776543 44344456777777777777532110 0000
Q ss_pred CCC----------CCcccCchhhhhccccccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCCchh---------
Q 040487 90 AAN----------PLRGFLPSLVSNFSASLQEFNAYGCELKGSIPQEIGNLSGLIVLNLFNNDLIGTIPKT--------- 150 (327)
Q Consensus 90 ~~~----------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------- 150 (327)
.++ .+...-..++. .. +|+.+.+...-.. .....+..+.++............ ....
T Consensus 157 ~~c~~L~~i~~~~~~~~I~~~aF~-~~-~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~ 232 (394)
T 4gt6_A 157 SYCYSLHTVTLPDSVTAIEERAFT-GT-ALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGD 232 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTT-TC-CCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSC
T ss_pred ecccccccccccceeeEecccccc-cc-ceeEEEECCcccc-cccchhhhccccceeccccccccc-ccceeeccccccc
Confidence 000 00000111111 12 4555555433221 223345556666655443322110 0000
Q ss_pred -----ccCCCCCCEEEccCCccccccCccccCccccchhhc------------cCCCCCCEEEcCCCcccccCCccccCc
Q 040487 151 -----VGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLL------------QGLVSLRELYLDSNKLSSSIPSSFWNL 213 (327)
Q Consensus 151 -----~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l------------~~~~~L~~L~l~~n~l~~~~~~~l~~l 213 (327)
+.....+..+.+... ++.....+|..+..|+.+.+ .+|++|+.+.+. +.++.....+|..+
T Consensus 233 ~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c 310 (394)
T 4gt6_A 233 YALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGC 310 (394)
T ss_dssp EEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTC
T ss_pred ccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCC
Confidence 001112222222211 11122223334444443332 345677777775 34443455667777
Q ss_pred cCCcEEecCCC--cCCCCCchhhhcccccccccC-----ccccCCCCCCCeEeCcCCcceeeCCCCCCCCCcceecccCC
Q 040487 214 EYILQIDLSSN--SLSGSLLPHIQKLKQQSLRKN-----SQVIGALPHLKQLNLSYNRLEGEIPIKGPFRNFSTQSCFGN 286 (327)
Q Consensus 214 ~~L~~L~ls~n--~l~~~~~~~l~~L~~l~l~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~l~l~~n 286 (327)
.+|+.+.+..+ .+....+....+|+.+.+..+ ..+|.++++|+.+++.++.... .....+..|+.+.+..+
T Consensus 311 ~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 311 ISLKSIDIPEGITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTCCEEECCTTCCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred CCcCEEEeCCcccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence 88888888654 233334444556777776554 4678899999999999886542 22334566776666544
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.79 E-value=8.7e-10 Score=88.83 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=68.4
Q ss_pred cccCCCCCcEEEccCC-cccCC----CchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCC
Q 040487 126 EIGNLSGLIVLNLFNN-DLIGT----IPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSN 200 (327)
Q Consensus 126 ~~~~l~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n 200 (327)
.+...++|++|++++| .+... +...+...++|+.|++++|.+.......+.. .+...+.|++|++++|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-------~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-------MLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-------HHHHCSSCCEEECCSS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-------HHHhCCCcCEEECcCC
Confidence 3444556666666666 55422 2233445566666666666665432222221 1112345777777777
Q ss_pred ccccc----CCccccCccCCcEEec--CCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCcce
Q 040487 201 KLSSS----IPSSFWNLEYILQIDL--SSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRLE 266 (327)
Q Consensus 201 ~l~~~----~~~~l~~l~~L~~L~l--s~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l~ 266 (327)
.+++. +...+...++|+.|++ ++|.++......+. ..+...++|++|++++|.+.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~-----------~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA-----------NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-----------HHHHHCSSCCEEECCCSSHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH-----------HHHHhCCCcCEEeccCCCCC
Confidence 77653 3344555667777777 66777655444443 23334567777777777664
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=2.1e-08 Score=80.70 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=47.3
Q ss_pred cccccCCCCCEEEccCc-ccccc----CcccccCCCCCcEEeCCCCccccccCCCCCCcccCchhhhhccccccEEEccC
Q 040487 42 NSIINASKLITLNLGYN-YFSGL----IPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRGFLPSLVSNFSASLQEFNAYG 116 (327)
Q Consensus 42 ~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 116 (327)
..+...+.|++|+|++| .+... +...+...++|++|++++|.++... ...+...+...+ +|++|++++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g------~~~l~~~L~~n~-~L~~L~L~~ 102 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV------AFALAEMLKVNN-TLKSLNVES 102 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH------HHHHHHHHHHCS-SCCEEECCS
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH------HHHHHHHHHhCC-CcCEEECcC
Confidence 34455667777777776 66532 2334455566777776666654310 001223333333 455555555
Q ss_pred Cccccc----CCccccCCCCCcEEEc--cCCccc
Q 040487 117 CELKGS----IPQEIGNLSGLIVLNL--FNNDLI 144 (327)
Q Consensus 117 ~~~~~~----~~~~~~~l~~L~~L~l--~~n~~~ 144 (327)
|.+... +...+...++|++|++ ++|.+.
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 555422 2333444445555555 445444
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.45 E-value=2.9e-05 Score=69.39 Aligned_cols=56 Identities=4% Similarity=0.098 Sum_probs=34.0
Q ss_pred CCCCCCEEEcccCcccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 22 TLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 22 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
...+|+.+.+.. .++.....+|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+.
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~ 99 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGM 99 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEEC
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECC
Confidence 345677777764 345455567777888888887543 443444566665 45555543
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=1.1e-07 Score=75.05 Aligned_cols=94 Identities=9% Similarity=-0.018 Sum_probs=68.5
Q ss_pred cCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCcc-ccccCcccccCC----CCCcEEeCCCCc-cccc
Q 040487 14 HLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYNY-FSGLIPNTFGNL----RFLNWLSPVQNY-LMTK 87 (327)
Q Consensus 14 ~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~ 87 (327)
.+|.... .-..|+.||+++|.+++.....+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. +|+.
T Consensus 52 ~LP~~~~-~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPL-DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCST-TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccC-CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 3554432 34569999999999987767778899999999999996 665444556654 479999999885 5541
Q ss_pred cCCCCCCcccCchhhhhccccccEEEccCCcc
Q 040487 88 PLAANPLRGFLPSLVSNFSASLQEFNAYGCEL 119 (327)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 119 (327)
--..+..++ +|++|++++|.-
T Consensus 131 ----------Gl~~L~~~~-~L~~L~L~~c~~ 151 (176)
T 3e4g_A 131 ----------GIIALHHFR-NLKYLFLSDLPG 151 (176)
T ss_dssp ----------HHHHGGGCT-TCCEEEEESCTT
T ss_pred ----------HHHHHhcCC-CCCEEECCCCCC
Confidence 123355665 999999999963
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=3e-06 Score=71.75 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=62.8
Q ss_pred cCCCCCCEEEcccCcccc--cCCcccccCCCCCEEEccCccccccCcccccCCC--CCcEEeCCCCccccccCCCCCCcc
Q 040487 21 CTLPNLERLTLSHNKLSG--TIPNSIINASKLITLNLGYNYFSGLIPNTFGNLR--FLNWLSPVQNYLMTKPLAANPLRG 96 (327)
Q Consensus 21 ~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~l~~~~~~~ 96 (327)
..+++|++|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+.. . ....
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~-~--~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF-R--DQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC-S--SHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc-C--cchh
Confidence 468999999999999996 3456677899999999999999854 3344444 9999999988875310 0 0011
Q ss_pred cCchhhhhccccccEEEc
Q 040487 97 FLPSLVSNFSASLQEFNA 114 (327)
Q Consensus 97 ~~~~~~~~~~~~L~~L~l 114 (327)
.....+..++ +|+.|+-
T Consensus 242 y~~~il~~~P-~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFP-KLLRLDG 258 (267)
T ss_dssp HHHHHHHHCT-TCCEESS
T ss_pred HHHHHHHHCc-ccCeECC
Confidence 1223456666 9998864
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=5.8e-06 Score=69.98 Aligned_cols=104 Identities=21% Similarity=0.194 Sum_probs=71.6
Q ss_pred CCCCE--EEcccCccc---ccCCcccccCCCCCEEEccCccccc--cCcccccCCCCCcEEeCCCCccccccCCCCCCcc
Q 040487 24 PNLER--LTLSHNKLS---GTIPNSIINASKLITLNLGYNYFSG--LIPNTFGNLRFLNWLSPVQNYLMTKPLAANPLRG 96 (327)
Q Consensus 24 ~~L~~--L~l~~~~l~---~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~l~~~~~~~ 96 (327)
+.|+. ++++.|... ..+.....++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++. .
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--------~ 212 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--------R 212 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--------G
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--------h
Confidence 34444 566676433 1112222478999999999999986 3456677899999999999998652 0
Q ss_pred cCchhhhhccccccEEEccCCcccccCC-------ccccCCCCCcEEEc
Q 040487 97 FLPSLVSNFSASLQEFNAYGCELKGSIP-------QEIGNLSGLIVLNL 138 (327)
Q Consensus 97 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~l~~L~~L~l 138 (327)
.+ ..+..+ +|++|++.+|.+.+.+| ..+..+++|+.|+-
T Consensus 213 ~l-~~l~~l--~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 213 EL-DKIKGL--KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GG-GGGTTS--CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hh-hhcccC--CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 11 112222 79999999999986554 23677899998863
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.03 E-value=0.00031 Score=62.63 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=56.9
Q ss_pred ccCCCCCcEEEccCCcccCCCchhccCCCCCCEEEccCCccccccCccccCccccchhh------------ccCCCCCCE
Q 040487 127 IGNLSGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLL------------LQGLVSLRE 194 (327)
Q Consensus 127 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~------------l~~~~~L~~ 194 (327)
+....+++.+.+..+ +......++..+..|+.+.+..+ ++.....++..+..|+.+. +.+|++|+.
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCE
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccc
Confidence 344455555555433 22233344555666666666543 2212222333333222221 133445555
Q ss_pred EEcCCCcccccCCccccCccCCcEEecCCCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCC
Q 040487 195 LYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYN 263 (327)
Q Consensus 195 L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n 263 (327)
+.+.++.++.....+|..+.+|+.+.+..+ ++... ..+|.++.+|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~---------------~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ---------------VYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC---------------TTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH---------------HHHhhCCCCCCEEEECCc
Confidence 555555444334445555555555555432 22111 256677888888888654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=1e-06 Score=69.44 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=55.7
Q ss_pred CCCcEEEccCCcccCCCchhccCCCCCCEEEccCCc-cccccCccccCccccchhhccCCCCCCEEEcCCC-cccccCCc
Q 040487 131 SGLIVLNLFNNDLIGTIPKTVGGLQQLQGLDLFGNN-LQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSN-KLSSSIPS 208 (327)
Q Consensus 131 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n-~l~~~~~~ 208 (327)
.+|++|++++|.+++..-..+..+++|+.|++++|. +++..-..+..++ ..+++|++|++++| .+|+..-.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-------~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-------NLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH-------HHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc-------cccCCCCEEEcCCCCcCCHHHHH
Confidence 356666776666665544555667777777777764 5533222222210 01235788888887 47766555
Q ss_pred cccCccCCcEEecCCCc-CCC
Q 040487 209 SFWNLEYILQIDLSSNS-LSG 228 (327)
Q Consensus 209 ~l~~l~~L~~L~ls~n~-l~~ 228 (327)
.+..+++|+.|++++|. +++
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 66778888888888874 554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.87 E-value=2.9e-06 Score=68.15 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=59.3
Q ss_pred cCCCCCcEEEccCC-cccCC----CchhccCCCCCCEEEccCCccccccCccccCccccchhhccCCCCCCEEEcCCCcc
Q 040487 128 GNLSGLIVLNLFNN-DLIGT----IPKTVGGLQQLQGLDLFGNNLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKL 202 (327)
Q Consensus 128 ~~l~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l 202 (327)
..-+.|++|+++++ .+.+. +..++..-+.|+.|++++|.+......++.. .+...+.|++|+|++|.|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~-------aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-------LIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-------HHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH-------HHhcCCccCeEecCCCcC
Confidence 33455666666553 44321 2334445566666666666665443333322 111234566677776666
Q ss_pred ccc----CCccccCccCCcEEecCCC---cCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCcc
Q 040487 203 SSS----IPSSFWNLEYILQIDLSSN---SLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNRL 265 (327)
Q Consensus 203 ~~~----~~~~l~~l~~L~~L~ls~n---~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~l 265 (327)
++. +..++..-+.|+.|++++| .+.......+. ..+...++|++|+++.|.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia-----------~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM-----------MAIEENESLLRVGISFASM 169 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH-----------HHHHHCSSCCEEECCCCCH
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH-----------HHHHhCCCcCeEeccCCCc
Confidence 643 2233444456777777654 23322222232 2233345667777666544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.40 E-value=5.8e-05 Score=60.56 Aligned_cols=121 Identities=10% Similarity=0.045 Sum_probs=80.4
Q ss_pred chhccCCCCCCEEEccCC-ccccccCccccCccccchhhccCCCCCCEEEcCCCcccccCC----ccccCccCCcEEecC
Q 040487 148 PKTVGGLQQLQGLDLFGN-NLQGSIPYDLCNLKRLYSLLLQGLVSLRELYLDSNKLSSSIP----SSFWNLEYILQIDLS 222 (327)
Q Consensus 148 ~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~ls 222 (327)
...+..-+.|+.|+++++ .+.......+.. .+...+.|+.|+|++|.+++... ..+..-+.|+.|+|+
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~-------aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIE-------AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHH-------HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHH-------HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 344556789999999985 776433222222 11234579999999999996533 344567899999999
Q ss_pred CCcCCCCCchhhhcccccccccCccccCCCCCCCeEeCcCCc---ceee----CCC-CCCCCCcceecccCC
Q 040487 223 SNSLSGSLLPHIQKLKQQSLRKNSQVIGALPHLKQLNLSYNR---LEGE----IPI-KGPFRNFSTQSCFGN 286 (327)
Q Consensus 223 ~n~l~~~~~~~l~~L~~l~l~~~~~~l~~~~~L~~L~l~~n~---l~~~----~~~-~~~~~~L~~l~l~~n 286 (327)
+|.|++.....+. ..+...+.|++|+|++|. +... +-. ...-++|+.+++..|
T Consensus 107 ~N~Ig~~Ga~ala-----------~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SNFLTPELLARLL-----------RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SSBCCHHHHHHHH-----------HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCcCCHHHHHHHH-----------HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 9999887766665 555567789999998653 3321 100 022356777777655
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.78 E-value=0.0024 Score=47.56 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=34.3
Q ss_pred EEEcccCccc-ccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCCCCcc
Q 040487 28 RLTLSHNKLS-GTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPVQNYL 84 (327)
Q Consensus 28 ~L~l~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 84 (327)
+++.+++.++ ..+|..+ -++|++|+|++|+++..-+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666665 2344332 22577777777777754455667777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.43 E-value=0.0072 Score=44.97 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=26.5
Q ss_pred CCCEEEcCCCcccccCCccccCccCCcEEecCCCcCC
Q 040487 191 SLRELYLDSNKLSSSIPSSFWNLEYILQIDLSSNSLS 227 (327)
Q Consensus 191 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 227 (327)
+|+.|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777777777555556677777788888877664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.69 E-value=7.2 Score=26.94 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=21.3
Q ss_pred ccccCCcccccCCCCCEEEccCccccccCcccccCCCCCcEEeCC
Q 040487 36 LSGTIPNSIINASKLITLNLGYNYFSGLIPNTFGNLRFLNWLSPV 80 (327)
Q Consensus 36 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 80 (327)
++.....+|.+|.+|+.+.+-.+ ++.+...+|.++.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33333445555555555555432 232333455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.87 E-value=17 Score=24.94 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=37.3
Q ss_pred CCCCcccCChhhhcCCCCCCEEEcccCcccccCCcccccCCCCCEEEccCc
Q 040487 8 QNQLSGHLPSTMGCTLPNLERLTLSHNKLSGTIPNSIINASKLITLNLGYN 58 (327)
Q Consensus 8 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n 58 (327)
+..++ .+....+..+..|+.+.|..+ ++.....+|.+|.+|+.+.+...
T Consensus 5 g~~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33444 566666669999999999875 44456778999999999999754
Done!