BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040488
         (339 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YV7|A Chain A, Crystal Structure Of The Clic Homolog From Drosophila
           Melanogaster
          Length = 260

 Score = 36.6 bits (83), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 21/113 (18%)

Query: 157 VFLWDEDLG--VENFNGKRYISIVKEEGLEISQPALDPDLSELHHHLTVRNNRTRVHRKI 214
           +F+ D+++   +EN   K  + +VK++  E    AL   L +++ HL+ RN R       
Sbjct: 114 LFVQDKEVATLIENLYVKLKLMLVKKD--EAKNNALLSHLRKINDHLSARNTR------- 164

Query: 215 HKLISGGRKCDLDSTKPP------CAG--FVEMMAPVFSIASWRCAWHMIQND 259
              ++G   C  D    P       AG  FV+   P    A WR  +HM Q D
Sbjct: 165 --FLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTALWRYMYHMYQLD 215


>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
           From Caenorhabditis Elegans
 pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
           From Caenorhabditis Elegans
          Length = 198

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 187 QPALDPDLSELHH---HLTVRNNRTRVHRKIHKLISGGRKCDLDSTKP 231
           +P +  ++ +LHH   H T  NN  ++  K+H+ +S G   +  + +P
Sbjct: 16  EPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNVKEAIALQP 63


>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
           From Caenorhabditis Elegans
 pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
           From Caenorhabditis Elegans
          Length = 195

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 187 QPALDPDLSELHH---HLTVRNNRTRVHRKIHKLISGGRKCDLDSTKP 231
           +P +  ++ +LHH   H T  NN  ++  K+H+ +S G   +  + +P
Sbjct: 16  EPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQP 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,439,939
Number of Sequences: 62578
Number of extensions: 428281
Number of successful extensions: 867
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 8
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)