BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040488
         (339 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
           discoideum GN=psmD2 PE=1 SV=1
          Length = 893

 Score = 35.8 bits (81), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 131 VSAINQTKWWFAKRFLH-PDIISDYAYVFLWDEDLGVENFNGKRYI-------SIVKEEG 182
           ++A   TKWWF  R L     ++    V LWD D G+   +   Y          +   G
Sbjct: 393 MTAEEDTKWWFKNRELGILSTVASTGMVVLWDIDGGLTKIDKFLYSQEKHCSNGALMAIG 452

Query: 183 LEIS--QPALDPDLSELHHHLTVRNNRTRVHR--KIHKLISGGRKCDLDSTKPPC 233
           +  S  +  +DP LS L  H+   N  TR+     +    +G ++ DL S   PC
Sbjct: 453 MLTSGIRSEMDPALSLLAEHINSSNTGTRISAIFGLGLAYAGTQRQDLMSLLSPC 507


>sp|A6VI01|ARLY_METM7 Argininosuccinate lyase OS=Methanococcus maripaludis (strain C7 /
           ATCC BAA-1331) GN=argH PE=3 SV=1
          Length = 481

 Score = 34.3 bits (77), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 137 TKWWFAKRFLHPDIISDYAYVFLWDEDLGVENFNGKRYISIVK---EEGLEISQPALDPD 193
           T   F K     DI+ D A+  +  E   +   NGK+ I+ +K   E+G+E     LDP 
Sbjct: 22  TSLEFDKEIFESDILCDIAHTTMLIEQNVISEENGKKIIAELKKIAEKGME--NLDLDPS 79

Query: 194 LSELH 198
           L ++H
Sbjct: 80  LDDIH 84


>sp|A4G0I4|ARLY_METM5 Argininosuccinate lyase OS=Methanococcus maripaludis (strain C5 /
           ATCC BAA-1333) GN=argH PE=3 SV=1
          Length = 481

 Score = 33.9 bits (76), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 137 TKWWFAKRFLHPDIISDYAYVFLWDEDLGVENFNGKRYISIVK---EEGLEISQPALDPD 193
           T   F K     DI+ D A+  +  E   +   NGK+ I+ +K   E+G+E     LDP 
Sbjct: 22  TSLEFDKEIFESDILCDIAHTTMLVEQNVISEENGKKIIAELKKIAEKGMETLD--LDPS 79

Query: 194 LSELH 198
           L ++H
Sbjct: 80  LDDIH 84


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,038,179
Number of Sequences: 539616
Number of extensions: 5717167
Number of successful extensions: 11965
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11964
Number of HSP's gapped (non-prelim): 4
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)