Query 040488
Match_columns 339
No_of_seqs 140 out of 166
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 1E-128 3E-133 918.5 25.3 283 39-327 3-293 (294)
2 cd02510 pp-GalNAc-T pp-GalNAc- 93.3 0.88 1.9E-05 42.5 10.5 167 152-325 82-257 (299)
3 TIGR01556 rhamnosyltran L-rham 93.1 0.37 8E-06 44.4 7.6 128 152-294 72-202 (281)
4 cd04185 GT_2_like_b Subfamily 92.5 0.36 7.8E-06 41.5 6.1 102 152-299 78-179 (202)
5 cd04186 GT_2_like_c Subfamily 88.8 0.83 1.8E-05 37.0 4.8 91 153-293 74-165 (166)
6 cd02520 Glucosylceramide_synth 81.7 1.2 2.5E-05 38.8 2.6 92 152-293 85-176 (196)
7 cd02526 GT2_RfbF_like RfbF is 81.6 4.6 0.0001 35.4 6.4 126 153-293 75-204 (237)
8 cd06442 DPM1_like DPM1_like re 79.9 0.82 1.8E-05 39.6 1.0 36 152-187 77-112 (224)
9 cd02525 Succinoglycan_BP_ExoA 78.9 4.3 9.2E-05 35.5 5.2 39 152-190 80-118 (249)
10 PF13641 Glyco_tranf_2_3: Glyc 78.3 3.5 7.6E-05 36.0 4.5 126 152-293 85-210 (228)
11 COG1216 Predicted glycosyltran 78.0 9 0.0002 36.4 7.5 139 154-300 85-227 (305)
12 PF01762 Galactosyl_T: Galacto 74.6 10 0.00022 33.7 6.4 176 62-276 6-186 (195)
13 cd04195 GT2_AmsE_like GT2_AmsE 74.2 1.3 2.8E-05 37.9 0.6 40 151-190 78-118 (201)
14 cd06433 GT_2_WfgS_like WfgS an 72.9 2.9 6.3E-05 34.8 2.5 37 152-188 74-111 (202)
15 PTZ00260 dolichyl-phosphate be 72.0 11 0.00023 37.0 6.4 109 75-188 68-200 (333)
16 PF13632 Glyco_trans_2_3: Glyc 68.1 13 0.00027 32.0 5.4 125 156-297 1-127 (193)
17 PLN02726 dolichyl-phosphate be 68.1 5.3 0.00011 36.1 3.2 38 152-189 92-129 (243)
18 cd06439 CESA_like_1 CESA_like_ 67.5 1.4 3E-05 39.2 -0.6 39 153-191 109-147 (251)
19 PF02434 Fringe: Fringe-like; 66.2 2.2 4.8E-05 40.4 0.4 126 151-304 84-218 (252)
20 cd06437 CESA_CaSu_A2 Cellulose 64.5 3.7 8.1E-05 36.3 1.5 132 152-298 86-218 (232)
21 PF00535 Glycos_transf_2: Glyc 64.1 5.4 0.00012 31.8 2.2 38 152-189 77-114 (169)
22 cd06434 GT2_HAS Hyaluronan syn 63.4 3.9 8.5E-05 35.8 1.4 41 152-192 76-116 (235)
23 cd06421 CESA_CelA_like CESA_Ce 61.9 6.6 0.00014 34.1 2.6 126 152-294 83-212 (234)
24 cd04188 DPG_synthase DPG_synth 60.9 3.4 7.4E-05 36.0 0.6 36 152-187 81-116 (211)
25 PF12621 DUF3779: Phosphate me 55.8 16 0.00034 30.1 3.6 52 143-199 34-87 (95)
26 cd06435 CESA_NdvC_like NdvC_li 54.0 7.2 0.00016 34.3 1.5 37 153-189 84-120 (236)
27 PF13712 Glyco_tranf_2_5: Glyc 48.9 14 0.00029 34.3 2.5 32 152-183 53-86 (217)
28 PF10111 Glyco_tranf_2_2: Glyc 42.7 32 0.00069 32.4 4.0 95 81-176 2-111 (281)
29 cd00761 Glyco_tranf_GTA_type G 39.6 25 0.00053 27.0 2.3 22 153-174 77-98 (156)
30 cd06423 CESA_like CESA_like is 38.8 18 0.00039 28.5 1.4 38 153-190 78-116 (180)
31 cd04184 GT2_RfbC_Mx_like Myxoc 38.0 26 0.00055 29.8 2.3 37 152-188 82-119 (202)
32 cd04192 GT_2_like_e Subfamily 36.6 28 0.0006 29.9 2.3 37 152-188 81-117 (229)
33 PF13506 Glyco_transf_21: Glyc 35.4 26 0.00057 31.1 2.1 125 152-296 30-156 (175)
34 cd04190 Chitin_synth_C C-termi 35.3 50 0.0011 30.1 3.9 30 151-180 71-100 (244)
35 cd04196 GT_2_like_d Subfamily 34.1 36 0.00078 28.9 2.6 46 243-293 158-203 (214)
36 PF09451 ATG27: Autophagy-rela 33.8 28 0.0006 33.4 2.1 40 8-51 200-239 (268)
37 cd06427 CESA_like_2 CESA_like_ 33.6 40 0.00087 30.2 3.0 38 152-189 83-122 (241)
38 COG0740 ClpP Protease subunit 32.5 86 0.0019 29.7 5.0 63 262-326 93-155 (200)
39 cd02522 GT_2_like_a GT_2_like_ 32.4 34 0.00074 29.5 2.2 41 152-192 71-111 (221)
40 PF12996 DUF3880: DUF based on 31.1 24 0.00053 27.6 1.0 25 148-182 13-37 (79)
41 TIGR03469 HonB hopene-associat 31.1 47 0.001 32.8 3.3 33 154-186 134-166 (384)
42 PRK15410 DgsA anti-repressor M 29.3 69 0.0015 31.4 3.9 42 294-336 164-205 (260)
43 cd06420 GT2_Chondriotin_Pol_N 28.9 40 0.00086 28.1 2.0 26 152-177 78-103 (182)
44 PF09828 Chrome_Resist: Chroma 25.8 45 0.00098 29.8 1.8 55 139-200 15-87 (135)
45 PF07976 Phe_hydrox_dim: Pheno 25.7 76 0.0017 28.4 3.3 71 47-126 34-125 (169)
46 PRK10073 putative glycosyl tra 23.9 72 0.0016 31.1 3.0 107 76-187 5-119 (328)
47 cd06913 beta3GnTL1_like Beta 1 23.8 83 0.0018 27.5 3.2 32 151-182 82-113 (219)
48 cd02515 Glyco_transf_6 Glycosy 22.9 2.6E+02 0.0056 27.8 6.6 95 76-174 34-145 (271)
49 KOG1555 26S proteasome regulat 22.9 42 0.0009 33.9 1.2 38 227-264 83-120 (316)
50 PLN02867 Probable galacturonos 22.0 37 0.0008 36.5 0.7 33 144-177 335-367 (535)
51 PRK03147 thiol-disulfide oxido 21.4 1.1E+02 0.0023 26.0 3.2 30 91-120 81-110 (173)
52 cd06438 EpsO_like EpsO protein 20.7 1E+02 0.0022 26.3 3.0 29 152-180 80-108 (183)
53 PF09258 Glyco_transf_64: Glyc 20.1 51 0.0011 31.3 1.1 95 86-181 8-103 (247)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=1.5e-128 Score=918.46 Aligned_cols=283 Identities=61% Similarity=1.133 Sum_probs=274.7
Q ss_pred ccCCCCCCCCCCCCccccCCccccccccCCCCCCCCCCCCcEEEEEeccccccchhhhhhcCCCCCcEEEEEEecCccCc
Q 040488 39 TQWRPRGSETLPQGIVARTSDYEMRSLSGKGNKKNSKTSMSLLAIAAGIKQKESVNKIVKKFPPSDFVVMLFHYDGVVDA 118 (339)
Q Consensus 39 ~~~~~~~~~~Lp~giv~~~sd~~~r~lw~~~~~~~~~~~k~Lla~~VG~kqk~~vd~~v~kf~~~nF~v~LfhYDg~vd~ 118 (339)
++|+|+|+|+||+|||+++|||+||||||+|.++.++++|||||||||+|||++||++|+|| ++|||||||||||+||+
T Consensus 3 ~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~ 81 (294)
T PF05212_consen 3 VPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDE 81 (294)
T ss_pred cCCCCCccccCCCCccccCCCceeeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCc
Confidence 68999999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred ccccccccceeEEEeecccchhccccccCccccCCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCCCcee
Q 040488 119 WRDLEWSAHAIHVSAINQTKWWFAKRFLHPDIISDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDLSELH 198 (339)
Q Consensus 119 w~d~ews~~aiHv~a~kqtKWw~akRfLhPdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~S~~s 198 (339)
|++||||++||||++.|||||||||||||||||++|||||||||||+||+|+|+|||+||++|||||||||||+++|++|
T Consensus 82 w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~ 161 (294)
T PF05212_consen 82 WDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIH 161 (294)
T ss_pred hhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred eeeeeeeCCceeeeeeeecccCCCccCCCCCCCCccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCC
Q 040488 199 HHLTVRNNRTRVHRKIHKLISGGRKCDLDSTKPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDP 278 (339)
Q Consensus 199 h~iT~R~~~~~vHr~~~~~~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~ 278 (339)
|+||+|++++++||.+ + +++.|.+++++||||||||||||||||+|||||||||||||+|||||||+|++|+ +++
T Consensus 162 ~~iT~R~~~~~vhr~~---~-~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~~~ 236 (294)
T PF05212_consen 162 HPITKRRPDSEVHRKT---R-GGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-GDR 236 (294)
T ss_pred eeEEeecCCceeEecc---C-CCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-ccc
Confidence 9999999999999832 3 6677888999999999999999999999999999999999999999999999999 578
Q ss_pred CCcEEEEeeeeEEEccccccCCcc--------hhHHhhchHHHHHHHHHHHHHhhhc
Q 040488 279 TKSIGIVDAEYIVHYGLPTLGGLV--------AKKVRNRSYVELEIFKNRWRSSVKD 327 (339)
Q Consensus 279 ~~kiGVVDa~~V~H~g~Ptlg~~~--------~~~vr~r~~~E~~~F~~r~~~a~~~ 327 (339)
++||||||||||+|+|+||||++| +.+||+||++||++|++||++|++|
T Consensus 237 ~~kiGVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~ 293 (294)
T PF05212_consen 237 HKKIGVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQKRWANAVKE 293 (294)
T ss_pred cccEEEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998 5789999999999999999999986
No 2
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.34 E-value=0.88 Score=42.51 Aligned_cols=167 Identities=11% Similarity=-0.015 Sum_probs=87.0
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCCC-ceeeeeeee-eC---CceeeeeeeecccCCCccCC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDLS-ELHHHLTVR-NN---RTRVHRKIHKLISGGRKCDL 226 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~S-~~sh~iT~R-~~---~~~vHr~~~~~~~~~~~C~~ 226 (339)
+..|||++.|.|..++..-++++++.+.+..-.+.-|.+..-.+ ...++-... .. ...++....... ....+..
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 160 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP-EEERRRE 160 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCC-HHHhhhc
Confidence 67999999999999999999999999998887777787653211 122221111 00 001111000000 0000011
Q ss_pred CCCCCCccceEEEeccccCHHHHHHHhhhhccCCcccch-hh--hhhhhccCCCCCCcEEEEeeeeEEEccc-cccCCcc
Q 040488 227 DSTKPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWG-VD--FQLGYCGQGDPTKSIGIVDAEYIVHYGL-PTLGGLV 302 (339)
Q Consensus 227 ~~~~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWG-LD--f~w~~c~~~~~~~kiGVVDa~~V~H~g~-Ptlg~~~ 302 (339)
.+..|..+..+-..+=+++|++|..+= .+.. ....|| =| +-+.--.. +.+|-++-...|.|... +..+...
T Consensus 161 ~~~~~~~~~~~~g~~~~irr~~~~~vG-gfDe-~~~~~~~ED~Dl~~R~~~~---G~~i~~~p~a~v~H~~~~~~~~~~~ 235 (299)
T cd02510 161 SPTAPIRSPTMAGGLFAIDREWFLELG-GYDE-GMDIWGGENLELSFKVWQC---GGSIEIVPCSRVGHIFRRKRKPYTF 235 (299)
T ss_pred CCCCCccCccccceeeEEEHHHHHHhC-CCCC-cccccCchhHHHHHHHHHc---CCeEEEeeccEEEEeccccCCCCCC
Confidence 111222333333334468899998873 3433 335565 34 44432223 46899999999999866 4443211
Q ss_pred hhHHhhchHHHHHHHHHHHHHhh
Q 040488 303 AKKVRNRSYVELEIFKNRWRSSV 325 (339)
Q Consensus 303 ~~~vr~r~~~E~~~F~~r~~~a~ 325 (339)
..+. .+.......|..+|....
T Consensus 236 ~~~~-~~~~~n~~r~~~~w~~~~ 257 (299)
T cd02510 236 PGGS-GTVLRNYKRVAEVWMDEY 257 (299)
T ss_pred CCcc-cHHHHHHHHHHHHHHHHH
Confidence 1100 022334455666665443
No 3
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=93.14 E-value=0.37 Score=44.40 Aligned_cols=128 Identities=16% Similarity=0.079 Sum_probs=73.3
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHh--CCcccCccc-CCCCCceeeeeeeeeCCceeeeeeeecccCCCccCCCC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEE--GLEISQPAL-DPDLSELHHHLTVRNNRTRVHRKIHKLISGGRKCDLDS 228 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPAL-d~~~S~~sh~iT~R~~~~~vHr~~~~~~~~~~~C~~~~ 228 (339)
+.+|||++.|+|..++.-.+.++++.+++. +.-+..|.. +.+ +....+..... +... +.. ... ..
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~--------~~~-~~ 139 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRG-TSRRLPAIHLD-GLLL-RQI--------SLD-GL 139 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCC-CcccCCceeec-ccce-eee--------ccc-cc
Confidence 379999999999999999999999988876 567777764 332 11122222111 1110 000 000 00
Q ss_pred CCCCccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEcc
Q 040488 229 TKPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHYG 294 (339)
Q Consensus 229 ~~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~g 294 (339)
+.+.-+.++=.-..+++|++++.+ .++..++ -.++.|.-|..-+.. .+.+|.++....+.|..
T Consensus 140 ~~~~~~~~~~~sg~li~~~~~~~i-G~fde~~-fi~~~D~e~~~R~~~-~G~~i~~~~~~~~~H~~ 202 (281)
T TIGR01556 140 TTPQKTSFLISSGCLITREVYQRL-GMMDEEL-FIDHVDTEWSLRAQN-YGIPLYIDPDIVLEHRI 202 (281)
T ss_pred CCceeccEEEcCcceeeHHHHHHh-CCccHhh-cccchHHHHHHHHHH-CCCEEEEeCCEEEEEec
Confidence 111111111001236899999977 3454444 245677766333332 35789999999999983
No 4
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.46 E-value=0.36 Score=41.54 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=66.0
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCCCceeeeeeeeeCCceeeeeeeecccCCCccCCCCCCC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDLSELHHHLTVRNNRTRVHRKIHKLISGGRKCDLDSTKP 231 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~S~~sh~iT~R~~~~~vHr~~~~~~~~~~~C~~~~~~p 231 (339)
+.+||+++.|+|..++.--++++.+.++..+..+..|..-...+
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~------------------------------------ 121 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG------------------------------------ 121 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC------------------------------------
Confidence 57999999999999998888888887764455444443222111
Q ss_pred CccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEccccccC
Q 040488 232 PCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHYGLPTLG 299 (339)
Q Consensus 232 pcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~g~Ptlg 299 (339)
++.+ -+++|++|+.+ ..+. +.-..||=|.-+..-+.. .+.++ .+.+..+.|....+.+
T Consensus 122 ~~~~------~~~~~~~~~~~-g~~~-~~~~~~~eD~~~~~r~~~-~G~~i-~~~~~~~~h~~~~~~~ 179 (202)
T cd04185 122 SFVG------VLISRRVVEKI-GLPD-KEFFIWGDDTEYTLRASK-AGPGI-YVPDAVVVHKTAINKG 179 (202)
T ss_pred ceEE------EEEeHHHHHHh-CCCC-hhhhccchHHHHHHHHHH-cCCcE-EecceEEEEccccccc
Confidence 1112 14788888866 3332 334578877665444332 35788 9999999999554444
No 5
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.82 E-value=0.83 Score=36.99 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=59.5
Q ss_pred CccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCcccCCCCCceeeeeeeeeCCceeeeeeeecccCCCccCCCCCCC
Q 040488 153 DYAYVFLWDEDLGVENFNGKRYISIVKEE-GLEISQPALDPDLSELHHHLTVRNNRTRVHRKIHKLISGGRKCDLDSTKP 231 (339)
Q Consensus 153 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~~S~~sh~iT~R~~~~~vHr~~~~~~~~~~~C~~~~~~p 231 (339)
.+|||++.|+|...+...+.++.+.+.+. +..+..+. +
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------------~--------------------- 112 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK--------------------V--------------------- 112 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc--------------------C---------------------
Confidence 79999999999999888888887754442 22222221 0
Q ss_pred CccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEc
Q 040488 232 PCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHY 293 (339)
Q Consensus 232 pcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~ 293 (339)
=.-+.+|++++++.+- .+.. ....+|-|..+...+.. .+.+|..+....+.|.
T Consensus 113 ------~~~~~~~~~~~~~~~~-~~~~-~~~~~~eD~~~~~~~~~-~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 113 ------SGAFLLVRREVFEEVG-GFDE-DFFLYYEDVDLCLRARL-AGYRVLYVPQAVIYHH 165 (166)
T ss_pred ------ceeeEeeeHHHHHHcC-CCCh-hhhccccHHHHHHHHHH-cCCeEEEccceEEEec
Confidence 0024578999998753 2322 22236777766554432 3579999999999997
No 6
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=81.69 E-value=1.2 Score=38.82 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=53.3
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCCCceeeeeeeeeCCceeeeeeeecccCCCccCCCCCCC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDLSELHHHLTVRNNRTRVHRKIHKLISGGRKCDLDSTKP 231 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~S~~sh~iT~R~~~~~vHr~~~~~~~~~~~C~~~~~~p 231 (339)
+.+|||++.|.|..++...+.++++... +|..+--.|. . ..|
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~-------~~~~~~v~~~-------------~---------~~g--------- 126 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLM-------DPGVGLVTCL-------------C---------AFG--------- 126 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhh-------CCCCCeEEee-------------c---------ccC---------
Confidence 5799999999999887777777665442 2222111000 0 000
Q ss_pred CccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEc
Q 040488 232 PCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHY 293 (339)
Q Consensus 232 pcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~ 293 (339)
.+=+|+|++++.+=.+ . ....-.+=|+.+..-+.. .+.+|..++.. ++|.
T Consensus 127 --------~~~~~r~~~~~~~ggf-~-~~~~~~~eD~~l~~rl~~-~G~~i~~~~~~-~~~~ 176 (196)
T cd02520 127 --------KSMALRREVLDAIGGF-E-AFADYLAEDYFLGKLIWR-LGYRVVLSPYV-VMQP 176 (196)
T ss_pred --------ceeeeEHHHHHhccCh-H-HHhHHHHHHHHHHHHHHH-cCCeEEEcchh-eecc
Confidence 2337888998876322 1 111234567777665542 46789888775 5554
No 7
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=81.62 E-value=4.6 Score=35.37 Aligned_cols=126 Identities=14% Similarity=0.109 Sum_probs=61.3
Q ss_pred CccEEEEecccccCCCCCHHHHH---HHHH-HhCCcccCcccCCCCCceeeeeeeeeCCceeeeeeeecccCCCccCCCC
Q 040488 153 DYAYVFLWDEDLGVENFNGKRYI---SIVK-EEGLEISQPALDPDLSELHHHLTVRNNRTRVHRKIHKLISGGRKCDLDS 228 (339)
Q Consensus 153 ~YDYIflwDDDL~vd~f~i~ry~---~Ivr-~~gLeISQPALd~~~S~~sh~iT~R~~~~~vHr~~~~~~~~~~~C~~~~ 228 (339)
.||||++.|+|..++...+.+++ +... ...+-+..|.............. +.....+... .. ....+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~--~~~~~---- 145 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGV-RKSGYKLRIQ--KE--GEEGL---- 145 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccce-eccCccceec--cc--ccCCc----
Confidence 68999999999999988888885 2221 22344555543322111111111 1111000000 00 00000
Q ss_pred CCCCccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEc
Q 040488 229 TKPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHY 293 (339)
Q Consensus 229 ~~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~ 293 (339)
+-..++=.-+-+|+|++++.+=. +..+. ...|-|..+...+. ..+.++..+....|.|.
T Consensus 146 ---~~~~~~~~~~~~~rr~~~~~~gg-fd~~~-~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 146 ---KEVDFLITSGSLISLEALEKVGG-FDEDL-FIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHE 204 (237)
T ss_pred ---eEeeeeeccceEEcHHHHHHhCC-CCHHH-cCccchHHHHHHHH-HcCCcEEEEcCeEEEec
Confidence 00001101112589999998743 32222 23355666544443 23578988888888887
No 8
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=79.89 E-value=0.82 Score=39.63 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=26.4
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQ 187 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQ 187 (339)
+..|||++.|+|..++.-.+.++++.+.+.+..+..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 456999999999888777777777776555555443
No 9
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=78.88 E-value=4.3 Score=35.46 Aligned_cols=39 Identities=10% Similarity=-0.027 Sum_probs=32.8
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCccc
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPAL 190 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPAL 190 (339)
+.+|||.+.|+|..++...++++++..++.+..+.+...
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPM 118 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecce
Confidence 379999999999999998899999888887777766543
No 10
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=78.28 E-value=3.5 Score=36.00 Aligned_cols=126 Identities=14% Similarity=0.092 Sum_probs=61.6
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCCCceeeeeeeeeCCceeeeeeeecccCCCccCCCCCCC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDLSELHHHLTVRNNRTRVHRKIHKLISGGRKCDLDSTKP 231 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~S~~sh~iT~R~~~~~vHr~~~~~~~~~~~C~~~~~~p 231 (339)
..+|||++.|+|..++...+.++++.+...+..+.|+........ ..++.-......+... ...........+
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 157 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWHL-----RFRSGRRALGVA 157 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EETT-----TS-TT-B----S
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhhh-----hhhhhhccccee
Confidence 359999999999999999999999999778888888665333111 1111111100000000 000000000011
Q ss_pred CccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEc
Q 040488 232 PCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHY 293 (339)
Q Consensus 232 pcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~ 293 (339)
.++| -+=+|+|++++.+-. +.. ..-|=|+.+...+.. .+.++.......+.|.
T Consensus 158 ~~~G----~~~~~rr~~~~~~g~-fd~---~~~~eD~~l~~r~~~-~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 158 FLSG----SGMLFRRSALEEVGG-FDP---FILGEDFDLCLRLRA-AGWRIVYAPDALVYHE 210 (228)
T ss_dssp -B------TEEEEEHHHHHHH-S---S---SSSSHHHHHHHHHHH-TT--EEEEEEEEEEE-
T ss_pred eccC----cEEEEEHHHHHHhCC-CCC---CCcccHHHHHHHHHH-CCCcEEEECCcEEEEe
Confidence 1221 123689999988852 321 444577776444432 4679999998888888
No 11
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=77.97 E-value=9 Score=36.38 Aligned_cols=139 Identities=12% Similarity=-0.061 Sum_probs=83.2
Q ss_pred ccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCCCceeeeeeeeeCCceeeeeeeecccCCCccCC----CCC
Q 040488 154 YAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDLSELHHHLTVRNNRTRVHRKIHKLISGGRKCDL----DST 229 (339)
Q Consensus 154 YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~S~~sh~iT~R~~~~~vHr~~~~~~~~~~~C~~----~~~ 229 (339)
|+|++++++|..++...++++++.+++.+-...-+++-.+...-.+.-... .......... ....+.. .+.
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~ 159 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRG-GESDGLTGGW----RASPLLEIAPDLSS 159 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheec-cccccccccc----eecccccccccccc
Confidence 559999999999999999999999999988877777644311111221111 1110000000 0001111 011
Q ss_pred CCCccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEccccccCC
Q 040488 230 KPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHYGLPTLGG 300 (339)
Q Consensus 230 ~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~g~Ptlg~ 300 (339)
.+.+.+++..-+-+++|++++.+=. +.. .-=.+.-|.-+..-+.. .+.++..+=.-.|.|...-+.+.
T Consensus 160 ~~~~~~~~~G~~~li~~~~~~~vG~-~de-~~F~y~eD~D~~~R~~~-~G~~i~~~p~a~i~H~~g~s~~~ 227 (305)
T COG1216 160 YLEVVASLSGACLLIRREAFEKVGG-FDE-RFFIYYEDVDLCLRARK-AGYKIYYVPDAIIYHKIGSSKGS 227 (305)
T ss_pred hhhhhhhcceeeeEEcHHHHHHhCC-CCc-ccceeehHHHHHHHHHH-cCCeEEEeeccEEEEeccCCCCC
Confidence 1223335667678899999998864 322 34556667666555532 34689999999999986666553
No 12
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=74.56 E-value=10 Score=33.73 Aligned_cols=176 Identities=16% Similarity=0.214 Sum_probs=93.5
Q ss_pred cccccCCCCCCCCCCCCcEEEEEecccc--ccchhhhhhcCCCCCcEEEEEEecCccCcccccccccceeEEEeecccch
Q 040488 62 MRSLSGKGNKKNSKTSMSLLAIAAGIKQ--KESVNKIVKKFPPSDFVVMLFHYDGVVDAWRDLEWSAHAIHVSAINQTKW 139 (339)
Q Consensus 62 ~r~lw~~~~~~~~~~~k~Lla~~VG~kq--k~~vd~~v~kf~~~nF~v~LfhYDg~vd~w~d~ews~~aiHv~a~kqtKW 139 (339)
+|.-|+++..- ...+.-+.+=+|... ...++..+++-....=||+++-+ +|.+..+. .+.+. .-+|
T Consensus 6 IR~TW~~~~~~--~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt--~K~~~-----~~~w 73 (195)
T PF01762_consen 6 IRETWGNQRNF--KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLT--LKTLA-----GLKW 73 (195)
T ss_pred HHHHHhccccc--CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhh--HHHHH-----HHHH
Confidence 46778875431 224556667778776 45566666553223337777644 34444331 11111 1222
Q ss_pred hccccccCccccCCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCCCceeeeeeeeeCCce--eeeeeeec
Q 040488 140 WFAKRFLHPDIISDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDLSELHHHLTVRNNRTR--VHRKIHKL 217 (339)
Q Consensus 140 w~akRfLhPdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~S~~sh~iT~R~~~~~--vHr~~~~~ 217 (339)
- .+ + ..+++||+..|||+-| ++.++++..++.-.+.+.+.+... .....-..|.+.++ +....|..
T Consensus 74 ~-~~-~-----c~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~y~~ 141 (195)
T PF01762_consen 74 A-SK-H-----CPNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEEYPD 141 (195)
T ss_pred H-Hh-h-----CCchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeeeccc
Confidence 2 12 1 2358999999999988 566777766666333333333322 22222334444333 22222221
Q ss_pred ccCCCccCCCCCCCCccceEEEeccccCHHHHHHHhhhhccCCcccchhh-hhhhhccCC
Q 040488 218 ISGGRKCDLDSTKPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVD-FQLGYCGQG 276 (339)
Q Consensus 218 ~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLD-f~w~~c~~~ 276 (339)
...|| |....+=++|+++.+.+....+. . .-+-+| -.+|.|++.
T Consensus 142 ----------~~yP~---y~~G~~yvls~~~v~~i~~~~~~-~-~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 142 ----------DYYPP---YCSGGGYVLSSDVVKRIYKASSH-T-PFFPLEDVFIGILAEK 186 (195)
T ss_pred ----------ccCCC---cCCCCeEEecHHHHHHHHHHhhc-C-CCCCchHHHHHHHHHH
Confidence 12333 33467889999999988766543 3 334455 444888863
No 13
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=74.23 E-value=1.3 Score=37.89 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=31.5
Q ss_pred cCCccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCccc
Q 040488 151 ISDYAYVFLWDEDLGVENFNGKRYISIVKEE-GLEISQPAL 190 (339)
Q Consensus 151 v~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPAL 190 (339)
.+.+|||++.|+|..++.-.+++.++.+.++ +..+..+..
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 4589999999999999988888888887654 566665543
No 14
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.90 E-value=2.9 Score=34.83 Aligned_cols=37 Identities=3% Similarity=-0.112 Sum_probs=27.3
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHH-HhCCcccCc
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVK-EEGLEISQP 188 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr-~~gLeISQP 188 (339)
+..|||++.|+|..++.-.+.+.++... ..+..+..+
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 4689999999999999988888884443 334544433
No 15
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=72.03 E-value=11 Score=36.99 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=63.2
Q ss_pred CCCCcEEEEEeccccccchhhhhhcC-----------CCCCcEEEEEEecCccCcccc--cccccc------eeEEEe--
Q 040488 75 KTSMSLLAIAAGIKQKESVNKIVKKF-----------PPSDFVVMLFHYDGVVDAWRD--LEWSAH------AIHVSA-- 133 (339)
Q Consensus 75 ~~~k~Lla~~VG~kqk~~vd~~v~kf-----------~~~nF~v~LfhYDg~vd~w~d--~ews~~------aiHv~a-- 133 (339)
..++--|++|+ ++...++.++++.- +..++.| ++.-||+.|+=.+ -++.+. .+++..
T Consensus 68 ~~~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EI-IVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~ 145 (333)
T PTZ00260 68 SDVDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEI-IIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL 145 (333)
T ss_pred CCeEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEE-EEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC
Confidence 34456677775 55555566555432 1125555 4457888875322 111111 144432
Q ss_pred ecccchhccccccCccccCCccEEEEecccccCCCCCHHHHHHHHHH---hCCcccCc
Q 040488 134 INQTKWWFAKRFLHPDIISDYAYVFLWDEDLGVENFNGKRYISIVKE---EGLEISQP 188 (339)
Q Consensus 134 ~kqtKWw~akRfLhPdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~---~gLeISQP 188 (339)
.|++|-.=.+.=+ -.+..|||++.|.|...+..++.++++.+++ .+.++..-
T Consensus 146 ~N~G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~G 200 (333)
T PTZ00260 146 RNKGKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFG 200 (333)
T ss_pred CCCChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEe
Confidence 4556544222111 1257899999999999999999999999875 45554443
No 16
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=68.11 E-value=13 Score=31.99 Aligned_cols=125 Identities=16% Similarity=0.079 Sum_probs=66.2
Q ss_pred EEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCCCceeeeeeeeeCCcee--eeeeeecccCCCccCCCCCCCCc
Q 040488 156 YVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDLSELHHHLTVRNNRTRV--HRKIHKLISGGRKCDLDSTKPPC 233 (339)
Q Consensus 156 YIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~S~~sh~iT~R~~~~~v--Hr~~~~~~~~~~~C~~~~~~ppc 233 (339)
||.+.|+|..++.....+..+.++.-+..+.|+...... . ...++.-+..... |..........+.|.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN-R-GSLLTRLQDFEYAISHGLSRLSQSSLGRPL-------- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC-C-CChhheeehhhhhhhhhhhHHHHHhcCCCc--------
Confidence 789999999999988899988888558888888876541 1 1112222211110 000000000111111
Q ss_pred cceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEccccc
Q 040488 234 AGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHYGLPT 297 (339)
Q Consensus 234 TgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~g~Pt 297 (339)
++=.-.=++++++++.+- .+. ..--.|=|+.+..-+. ..+.+++.++...+ |+..|.
T Consensus 71 --~~~G~~~~~r~~~l~~vg-~~~--~~~~~~ED~~l~~~l~-~~G~~~~~~~~~~~-~~~~p~ 127 (193)
T PF13632_consen 71 --FLSGSGMLFRREALREVG-GFD--DPFSIGEDMDLGFRLR-RAGYRIVYVPDAIV-YTEAPP 127 (193)
T ss_pred --cccCcceeeeHHHHHHhC-ccc--ccccccchHHHHHHHH-HCCCEEEEecccce-eeeCCC
Confidence 111234578999999762 111 0122234555533221 13479999998844 554555
No 17
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=68.09 E-value=5.3 Score=36.09 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.4
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcc
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPA 189 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 189 (339)
+..|||++.|.|...+...++++++.+.+.+.++....
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 57899999999999988888999988877777665443
No 18
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=67.51 E-value=1.4 Score=39.20 Aligned_cols=39 Identities=8% Similarity=-0.037 Sum_probs=31.0
Q ss_pred CccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccC
Q 040488 153 DYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALD 191 (339)
Q Consensus 153 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd 191 (339)
..|||++.|+|..++...+.++++.++..+..+.++...
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 469999999999999888888888887666666665543
No 19
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=66.19 E-value=2.2 Score=40.35 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=54.7
Q ss_pred cCCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCCCceeeeeeeeeC--CceeeeeeeecccCCCccCCCC
Q 040488 151 ISDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDLSELHHHLTVRNN--RTRVHRKIHKLISGGRKCDLDS 228 (339)
Q Consensus 151 v~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~S~~sh~iT~R~~--~~~vHr~~~~~~~~~~~C~~~~ 228 (339)
-..+|++++.|||..| ++++++++...++ -+||-.=.. ....++++.-.+ ....
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~--~~~~~yiG~-~~~~~~~~~~~~~~~~~~------------------ 139 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYD--PSEPIYIGR-PSGDRPIEIIHRFNPNKS------------------ 139 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS---TTS--EEE--EE----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCC--CccCEEeee-eccCccceeecccccccc------------------
Confidence 3578999999999987 6777777777654 234432111 111222222100 0000
Q ss_pred CCCCccceEEE-eccccCHHHHHHHhh------hhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEccccccCCc
Q 040488 229 TKPPCAGFVEM-MAPVFSIASWRCAWH------MIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHYGLPTLGGL 301 (339)
Q Consensus 229 ~~ppcTgFVEi-MAPVFSR~Awrcvw~------~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~g~Ptlg~~ 301 (339)
.+.+-.|.-. -.-|+||.+.+.+-+ ..+.+....+.=|..+++|++. .-+|-.+++ .-.|..+|.+...
T Consensus 140 -~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~--~lgv~lt~s-~~fhs~~~~l~~~ 215 (252)
T PF02434_consen 140 -KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN--LLGVPLTHS-PLFHSHLENLQDY 215 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH--TT---EEE--TT---SSS-GGG-
T ss_pred -CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh--cCCcceeec-hhhcccCcccccC
Confidence 0001112211 124689999888732 2223333466889999999973 123444554 5578888887655
Q ss_pred chh
Q 040488 302 VAK 304 (339)
Q Consensus 302 ~~~ 304 (339)
...
T Consensus 216 ~~~ 218 (252)
T PF02434_consen 216 NPE 218 (252)
T ss_dssp -TT
T ss_pred CHH
Confidence 433
No 20
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=64.50 E-value=3.7 Score=36.34 Aligned_cols=132 Identities=14% Similarity=0.022 Sum_probs=67.2
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCCCceeeeee-eeeCCceeeeeeeecccCCCccCCCCCC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDLSELHHHLT-VRNNRTRVHRKIHKLISGGRKCDLDSTK 230 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~S~~sh~iT-~R~~~~~vHr~~~~~~~~~~~C~~~~~~ 230 (339)
+.+|||++.|.|..++...++++..+....+..+.|+-+......- ..++ .+.-....|-..... +. ..
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~-------~~ 155 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANY-SLLTRVQAMSLDYHFTIEQV--AR-------SS 155 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCC-chhhHhhhhhHHhhhhHhHh--hH-------hh
Confidence 4899999999999998888888777665555555555332100000 0010 000000000000000 00 00
Q ss_pred CCccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEcccccc
Q 040488 231 PPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHYGLPTL 298 (339)
Q Consensus 231 ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~g~Ptl 298 (339)
+.+...+=.++-+|+|++|..+-.+ .. ...+=|+.+...+. .++.++..++...+.|...+++
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg~-~~---~~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~~~~~~ 218 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGGW-NH---DTLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAELPASM 218 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCCC-CC---CcchhhHHHHHHHH-HCCCeEEEeccceeeeeCCcCH
Confidence 0010111112237999999887433 22 22457777655553 2467899999888888843333
No 21
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=64.06 E-value=5.4 Score=31.75 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=29.9
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcc
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPA 189 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 189 (339)
+..|||++.|+|..++.-.+.++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 46679999999999999999999999999776554443
No 22
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=63.41 E-value=3.9 Score=35.79 Aligned_cols=41 Identities=10% Similarity=-0.093 Sum_probs=35.7
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDP 192 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 192 (339)
+.+|||++.|+|..++...+++.++.+...+..+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 48999999999999999999999999987788888876544
No 23
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=61.91 E-value=6.6 Score=34.11 Aligned_cols=126 Identities=10% Similarity=-0.070 Sum_probs=70.4
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHH-hCCcccCcccCCCCCceeeeeeeeeC---CceeeeeeeecccCCCccCCC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKE-EGLEISQPALDPDLSELHHHLTVRNN---RTRVHRKIHKLISGGRKCDLD 227 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~-~gLeISQPALd~~~S~~sh~iT~R~~---~~~vHr~~~~~~~~~~~C~~~ 227 (339)
+.+|||.+.|+|..++.-.+.++++.+.+ .++.+.++............+..... ....++ +.. +...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~--- 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGV-IQP---GRDRW--- 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHH-HHH---HHhhc---
Confidence 38999999999999999999999999987 66777766421110000000110000 000000 000 00000
Q ss_pred CCCCCccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEcc
Q 040488 228 STKPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHYG 294 (339)
Q Consensus 228 ~~~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~g 294 (339)
++ .++=.+.=+|+|++++.+-.+- . ...+-|+.+..-+.. .+.+|..++...+.|..
T Consensus 156 ----~~-~~~~g~~~~~r~~~~~~ig~~~-~---~~~~eD~~l~~r~~~-~g~~i~~~~~~~~~~~~ 212 (234)
T cd06421 156 ----GA-AFCCGSGAVVRREALDEIGGFP-T---DSVTEDLATSLRLHA-KGWRSVYVPEPLAAGLA 212 (234)
T ss_pred ----CC-ceecCceeeEeHHHHHHhCCCC-c---cceeccHHHHHHHHH-cCceEEEecCccccccC
Confidence 11 1222244578999999875432 2 345778777533321 35689888888888774
No 24
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=60.94 E-value=3.4 Score=36.04 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=26.5
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQ 187 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQ 187 (339)
+..|||++.|.|...+.-.+.++++.+...+..+..
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 346999999999888877777777775555554444
No 25
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=55.83 E-value=16 Score=30.08 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=38.9
Q ss_pred ccccCccccCCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcc--cCCCCCceee
Q 040488 143 KRFLHPDIISDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPA--LDPDLSELHH 199 (339)
Q Consensus 143 kRfLhPdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA--Ld~~~S~~sh 199 (339)
..|+||.+.++--.|||+-|++|+.... ++-.++.|+.||.-+ |+.. |.+.+
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA~ldek-gkv~~ 87 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGATLDEK-GKVVW 87 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCeEEccC-CCEEE
Confidence 4589999999999999999999997644 455677778877655 4443 44444
No 26
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=54.02 E-value=7.2 Score=34.32 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=30.8
Q ss_pred CccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcc
Q 040488 153 DYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPA 189 (339)
Q Consensus 153 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 189 (339)
.||||++.|+|..++.-.+.++++.++..+..+.++.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP 120 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence 4999999999999999888988888876677666653
No 27
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=48.88 E-value=14 Score=34.29 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=23.2
Q ss_pred CCccEEEEecccccCCCCC-HHHHHHHH-HHhCC
Q 040488 152 SDYAYVFLWDEDLGVENFN-GKRYISIV-KEEGL 183 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~-i~ry~~Iv-r~~gL 183 (339)
+.++|+++..||+.+.+.+ +.+.+++. +...+
T Consensus 53 a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~ 86 (217)
T PF13712_consen 53 AKAKYLVFLHQDVFIINENWLEDILEIFEEDPNI 86 (217)
T ss_dssp --SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTE
T ss_pred CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCc
Confidence 6899999999999998766 78888888 43343
No 28
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=42.67 E-value=32 Score=32.42 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=52.5
Q ss_pred EEEEecccccc-----chhhhh---hcC-CCCCcEEEEEEecCccCccc-cc-cccc--cee-EEEeecccc-hhccccc
Q 040488 81 LAIAAGIKQKE-----SVNKIV---KKF-PPSDFVVMLFHYDGVVDAWR-DL-EWSA--HAI-HVSAINQTK-WWFAKRF 145 (339)
Q Consensus 81 la~~VG~kqk~-----~vd~~v---~kf-~~~nF~v~LfhYDg~vd~w~-d~-ews~--~ai-Hv~a~kqtK-Ww~akRf 145 (339)
+++||..+... .+..++ +++ +..++.|++..++.. +++. .+ +..+ ..+ .+....+.+ |-.++..
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 68899988742 332223 332 356888888887664 3341 11 1111 222 111111111 3333211
Q ss_pred cCccccCCccEEEEecccccCCCCCHHHHHH
Q 040488 146 LHPDIISDYAYVFLWDEDLGVENFNGKRYIS 176 (339)
Q Consensus 146 LhPdiv~~YDYIflwDDDL~vd~f~i~ry~~ 176 (339)
---=-.+.-|||+++|-|+.++...++++++
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1112336899999999999999888888888
No 29
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=39.62 E-value=25 Score=27.02 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=19.2
Q ss_pred CccEEEEecccccCCCCCHHHH
Q 040488 153 DYAYVFLWDEDLGVENFNGKRY 174 (339)
Q Consensus 153 ~YDYIflwDDDL~vd~f~i~ry 174 (339)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 7999999999999888777776
No 30
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=38.77 E-value=18 Score=28.51 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=25.9
Q ss_pred CccEEEEecccccCCCCCHHHH-HHHHHHhCCcccCccc
Q 040488 153 DYAYVFLWDEDLGVENFNGKRY-ISIVKEEGLEISQPAL 190 (339)
Q Consensus 153 ~YDYIflwDDDL~vd~f~i~ry-~~Ivr~~gLeISQPAL 190 (339)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 8999999999998887767777 3333444444444443
No 31
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=38.04 E-value=26 Score=29.80 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=29.6
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHH-HHhCCcccCc
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIV-KEEGLEISQP 188 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQP 188 (339)
+.+|||++.|+|..++...++++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999999888888998887 5555655544
No 32
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.57 E-value=28 Score=29.94 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=28.2
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCc
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQP 188 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQP 188 (339)
+.+|||++.|+|..++.-.++++++.+.+.+-...+.
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~ 117 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAG 117 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEee
Confidence 4689999999999998888888888666555444333
No 33
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=35.36 E-value=26 Score=31.15 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=71.7
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHH--hCCcccCcccCCCCCceeeeeeeeeCCceeeeeeeecccCCCccCCCCC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKE--EGLEISQPALDPDLSELHHHLTVRNNRTRVHRKIHKLISGGRKCDLDST 229 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~--~gLeISQPALd~~~S~~sh~iT~R~~~~~vHr~~~~~~~~~~~C~~~~~ 229 (339)
+.||||++-|+|+.++.-.+.++..-... .|+-=+-|-..+.++..+.-...-. .+|-.++..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~---~~~~~~~~a------------ 94 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFF---NFLPGVLQA------------ 94 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHH---hHHHHHHHH------------
Confidence 89999999999999988877777765554 3332222332222221111100000 111111110
Q ss_pred CCCccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEcccc
Q 040488 230 KPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHYGLP 296 (339)
Q Consensus 230 ~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~g~P 296 (339)
-.-++|+=.|+=.|+|++++.. .-++ .+.+.-.=||.++..+.. .+.+|...... |.++..|
T Consensus 95 -~~~~~~~~G~~m~~rr~~L~~~-GG~~-~l~~~ladD~~l~~~~~~-~G~~v~~~~~~-v~~~~~~ 156 (175)
T PF13506_consen 95 -LGGAPFAWGGSMAFRREALEEI-GGFE-ALADYLADDYALGRRLRA-RGYRVVLSPYP-VVQTSVP 156 (175)
T ss_pred -hcCCCceecceeeeEHHHHHHc-ccHH-HHhhhhhHHHHHHHHHHH-CCCeEEEcchh-eeecccC
Confidence 0134677788889999999875 2232 245567789999888763 56777776543 4455333
No 34
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=35.28 E-value=50 Score=30.12 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=25.7
Q ss_pred cCCccEEEEecccccCCCCCHHHHHHHHHH
Q 040488 151 ISDYAYVFLWDEDLGVENFNGKRYISIVKE 180 (339)
Q Consensus 151 v~~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 180 (339)
.+.+|||++.|.|..++.--+.++.+.+.+
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~ 100 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDK 100 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHh
Confidence 578999999999999988888888877743
No 35
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.14 E-value=36 Score=28.89 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=31.3
Q ss_pred ccCHHHHHHHhhhhccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEc
Q 040488 243 VFSIASWRCAWHMIQNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHY 293 (339)
Q Consensus 243 VFSR~Awrcvw~~iqNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~ 293 (339)
+|+|++++.+-.+..+ ..|+-|+.+..++.. ..++.+++...+.|+
T Consensus 158 ~~r~~~~~~~~~~~~~---~~~~~D~~~~~~~~~--~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPFPDA---DVIMHDWWLALLASA--FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhcccccc---ccccchHHHHHHHHH--cCceEEcchhHHHHh
Confidence 7999999988643322 267778766555542 457888888777655
No 36
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=33.82 E-value=28 Score=33.38 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=27.8
Q ss_pred cceeeehhHHHHHHHHHHhhheeeeecccccccCCCCCCCCCCC
Q 040488 8 ISILRHFVPTVLLLSAVFFIGCAFVVTGSKETQWRPRGSETLPQ 51 (339)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~ 51 (339)
.++...++++++|..++|||+.++. .-+....+|.|.||.
T Consensus 200 ~g~f~wl~i~~~l~~~~Y~i~g~~~----n~~~~g~~g~e~iP~ 239 (268)
T PF09451_consen 200 WGFFTWLFIILFLFLAAYLIFGSWY----NYNRYGARGFELIPH 239 (268)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhhe----eeccCCCCCceeccc
Confidence 4555677888888889999886542 224455677888884
No 37
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=33.57 E-value=40 Score=30.19 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.2
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHh--CCcccCcc
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEE--GLEISQPA 189 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPA 189 (339)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 578999999999999988888888877643 33344543
No 38
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=32.47 E-value=86 Score=29.66 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=42.9
Q ss_pred ccchhhhhhhhccCCCCCCcEEEEeeeeEEEccccccCCcchhHHhhchHHHHHHHHHHHHHhhh
Q 040488 262 HAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHYGLPTLGGLVAKKVRNRSYVELEIFKNRWRSSVK 326 (339)
Q Consensus 262 hGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~g~Ptlg~~~~~~vr~r~~~E~~~F~~r~~~a~~ 326 (339)
.||+-=+--.-.+.|+++++++-=-|..++|+ |.+|.+|...==+....|+...++|+.++..
T Consensus 93 ~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHq--P~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a 155 (200)
T COG0740 93 MGQAASMGSVLLMAGDKGKRFALPNARIMIHQ--PSGGAQGQASDIEIHAREILKIKERLNRIYA 155 (200)
T ss_pred ecHHHhHHHHHHhcCCCCCceeCCCceEEEec--CCccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333445677788999999999999 8888888555444556677777777766544
No 39
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.44 E-value=34 Score=29.48 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=31.8
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDP 192 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 192 (339)
+.+|||.+.|+|..++...+++++......+..++.+....
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence 35899999999999998888888777777666666655443
No 40
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=31.15 E-value=24 Score=27.64 Aligned_cols=25 Identities=24% Similarity=0.631 Sum_probs=19.0
Q ss_pred ccccCCccEEEEecccccCCCCCHHHHHHHHHHhC
Q 040488 148 PDIISDYAYVFLWDEDLGVENFNGKRYISIVKEEG 182 (339)
Q Consensus 148 Pdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~g 182 (339)
..+...|||||++|.+ .++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4788999999999975 455556666
No 41
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=31.08 E-value=47 Score=32.79 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=29.7
Q ss_pred ccEEEEecccccCCCCCHHHHHHHHHHhCCccc
Q 040488 154 YAYVFLWDEDLGVENFNGKRYISIVKEEGLEIS 186 (339)
Q Consensus 154 YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeIS 186 (339)
+|||++.|.|..++...++++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 42
>PRK15410 DgsA anti-repressor MtfA; Provisional
Probab=29.35 E-value=69 Score=31.38 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=30.8
Q ss_pred cccccCCcchhHHhhchHHHHHHHHHHHHHhhhcCCCccCcCc
Q 040488 294 GLPTLGGLVAKKVRNRSYVELEIFKNRWRSSVKDDDCWVDLLE 336 (339)
Q Consensus 294 g~Ptlg~~~~~~vr~r~~~E~~~F~~r~~~a~~~d~~w~dp~~ 336 (339)
|.|.+.+..+..-.+--..|++.|++++.. +.++..++|||.
T Consensus 164 G~PpL~~~~~~~W~~~~~~~~~~l~~~~~~-~~~~~~~id~Ya 205 (260)
T PRK15410 164 GVPFIPLREVAGWEHDLHAAMNNIQEEIDL-VGENAASIDAYA 205 (260)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCccc
Confidence 677775555566666677888999888775 345666999996
No 43
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=28.89 E-value=40 Score=28.11 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=19.9
Q ss_pred CCccEEEEecccccCCCCCHHHHHHH
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISI 177 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~I 177 (339)
+.+|||++.|+|..++..-+.+.++.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 57899999999998866555555544
No 44
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=25.85 E-value=45 Score=29.82 Aligned_cols=55 Identities=20% Similarity=0.440 Sum_probs=36.8
Q ss_pred hhccccccCccccCCccEEEEeccc-------ccCCCCCH-----------HHHHHHHHHhCCcccCcccCCCCCceeee
Q 040488 139 WWFAKRFLHPDIISDYAYVFLWDED-------LGVENFNG-----------KRYISIVKEEGLEISQPALDPDLSELHHH 200 (339)
Q Consensus 139 Ww~akRfLhPdiv~~YDYIflwDDD-------L~vd~f~i-----------~ry~~Ivr~~gLeISQPALd~~~S~~sh~ 200 (339)
=|+++||+-|+ =+++|+.++. .+-..||+ -.|=-++++||| .+|||..= +.+-|.
T Consensus 15 ~WLIrRFIDp~----A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~l-a~IV~~ 87 (135)
T PF09828_consen 15 PWLIRRFIDPE----AEFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARL-AAIVRG 87 (135)
T ss_pred HHHHHHhcCCC----ceEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHH-HHHHHH
Confidence 48999999885 3577777766 12223333 246678899999 99999764 444343
No 45
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=25.71 E-value=76 Score=28.37 Aligned_cols=71 Identities=24% Similarity=0.339 Sum_probs=37.4
Q ss_pred CCCCCCccccCCccccccccCCCCCCCCCCCC-cEEEEEeccccccc----hh----------hhhhcCCC------CCc
Q 040488 47 ETLPQGIVARTSDYEMRSLSGKGNKKNSKTSM-SLLAIAAGIKQKES----VN----------KIVKKFPP------SDF 105 (339)
Q Consensus 47 ~~Lp~giv~~~sd~~~r~lw~~~~~~~~~~~k-~Lla~~VG~kqk~~----vd----------~~v~kf~~------~nF 105 (339)
++||+.-|.+-.|-....|-.. .+...+ .|++++ |.-++.. ++ ..+++|.. .-|
T Consensus 34 ~Rlp~~~v~r~aD~~p~~l~~~----l~sdGrfri~vFa-gd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~ 108 (169)
T PF07976_consen 34 RRLPSAKVVRHADGNPVHLQDD----LPSDGRFRILVFA-GDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVF 108 (169)
T ss_dssp CB----EEEETTTTEEEEGGGG------SSS-EEEEEEE-ETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSE
T ss_pred cccCCceEEEEcCCCChhHhhh----cccCCCEEEEEEe-CCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCee
Confidence 4788888999999888777443 222344 455555 5443322 22 34556643 339
Q ss_pred EEEEEEecCccCccccccccc
Q 040488 106 VVMLFHYDGVVDAWRDLEWSA 126 (339)
Q Consensus 106 ~v~LfhYDg~vd~w~d~ews~ 126 (339)
|++|+| -..+.++||.+
T Consensus 109 ~~~~I~----~~~~~~~e~~d 125 (169)
T PF07976_consen 109 DVLLIH----SSPRDEVELFD 125 (169)
T ss_dssp EEEEEE----SS-CCCS-GGG
T ss_pred EEEEEe----cCCCCceeHHH
Confidence 999999 23466677664
No 46
>PRK10073 putative glycosyl transferase; Provisional
Probab=23.88 E-value=72 Score=31.07 Aligned_cols=107 Identities=13% Similarity=0.113 Sum_probs=59.8
Q ss_pred CCCcEEEEEeccccccchhhhhhcC---CCCCcEEEEEEecCccCcccc-c-cccc--ceeEEEe-ecccchhccccccC
Q 040488 76 TSMSLLAIAAGIKQKESVNKIVKKF---PPSDFVVMLFHYDGVVDAWRD-L-EWSA--HAIHVSA-INQTKWWFAKRFLH 147 (339)
Q Consensus 76 ~~k~Lla~~VG~kqk~~vd~~v~kf---~~~nF~v~LfhYDg~vd~w~d-~-ews~--~aiHv~a-~kqtKWw~akRfLh 147 (339)
.++.-|++||=.. ...+.+.++-. ...+|.|++.. ||++|+=.+ + +|.+ ..+++.. .+++. +...-.
T Consensus 5 ~p~vSVIIP~yN~-~~~L~~~l~Sl~~Qt~~~~EIIiVd-DgStD~t~~i~~~~~~~~~~i~vi~~~n~G~---~~arN~ 79 (328)
T PRK10073 5 TPKLSIIIPLYNA-GKDFRAFMESLIAQTWTALEIIIVN-DGSTDNSVEIAKHYAENYPHVRLLHQANAGV---SVARNT 79 (328)
T ss_pred CCeEEEEEeccCC-HHHHHHHHHHHHhCCCCCeEEEEEe-CCCCccHHHHHHHHHhhCCCEEEEECCCCCh---HHHHHH
Confidence 3456777887443 34444433322 12577777665 888764211 1 1211 1233321 12221 110001
Q ss_pred ccccCCccEEEEecccccCCCCCHHHHHHHHHHhCCcccC
Q 040488 148 PDIISDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQ 187 (339)
Q Consensus 148 Pdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQ 187 (339)
-=-.+.-|||++.|.|-.++...++++++.+++.++++..
T Consensus 80 gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 80 GLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 1123567999999999989888888999988888877754
No 47
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=23.75 E-value=83 Score=27.49 Aligned_cols=32 Identities=13% Similarity=-0.034 Sum_probs=26.7
Q ss_pred cCCccEEEEecccccCCCCCHHHHHHHHHHhC
Q 040488 151 ISDYAYVFLWDEDLGVENFNGKRYISIVKEEG 182 (339)
Q Consensus 151 v~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~g 182 (339)
.+.+|||++.|.|..++...+.+.+..+.+..
T Consensus 82 ~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 82 QSSGRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred hcCCCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 35799999999999999988888887776654
No 48
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=22.92 E-value=2.6e+02 Score=27.81 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=57.4
Q ss_pred CCCcEEEEEeccccccchhhhhh---cCCCCCcEEEEEEecCccCcccccccc----cceeEEEeecccchh-c--cccc
Q 040488 76 TSMSLLAIAAGIKQKESVNKIVK---KFPPSDFVVMLFHYDGVVDAWRDLEWS----AHAIHVSAINQTKWW-F--AKRF 145 (339)
Q Consensus 76 ~~k~Lla~~VG~kqk~~vd~~v~---kf~~~nF~v~LfhYDg~vd~w~d~ews----~~aiHv~a~kqtKWw-~--akRf 145 (339)
..--|+.+++|.=.. ..+..++ |+...++.++-+.+ +|.-..++.- .+-+.|...++.+.| . +.||
T Consensus 34 ~tIgl~vfatGkY~~-f~~~F~~SAEk~Fm~g~~v~YyVF---TD~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl~Rm 109 (271)
T cd02515 34 ITIGLTVFAVGKYTE-FLERFLESAEKHFMVGYRVIYYIF---TDKPAAVPEVELGPGRRLTVLKIAEESRWQDISMRRM 109 (271)
T ss_pred CEEEEEEEEeccHHH-HHHHHHHHHHHhccCCCeeEEEEE---eCCcccCcccccCCCceeEEEEeccccCCcHHHHHHH
Confidence 344688999997442 3333222 33468888877776 3434444432 255666666677777 2 2233
Q ss_pred ---c-C--ccccCCccEEEEecccccC-CCCCHHHH
Q 040488 146 ---L-H--PDIISDYAYVFLWDEDLGV-ENFNGKRY 174 (339)
Q Consensus 146 ---L-h--Pdiv~~YDYIflwDDDL~v-d~f~i~ry 174 (339)
+ | -.+..++||+|..|=|... +++..+-+
T Consensus 110 ~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~L 145 (271)
T cd02515 110 KTLADHIADRIGHEVDYLFCMDVDMVFQGPFGVETL 145 (271)
T ss_pred HHHHHHHHHhhcccCCEEEEeeCCceEeecCCHHHh
Confidence 2 2 3478899999999977654 45555554
No 49
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=22.91 E-value=42 Score=33.87 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=32.1
Q ss_pred CCCCCCccceEEEeccccCHHHHHHHhhhhccCCcccc
Q 040488 227 DSTKPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAW 264 (339)
Q Consensus 227 ~~~~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGW 264 (339)
+..+--.|.|||-+-|||++.+..-+--..+..++-||
T Consensus 83 ~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGW 120 (316)
T KOG1555|consen 83 PQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGW 120 (316)
T ss_pred ccccceecccchhccHHHHHHHHHHHHhcCCcceEEee
Confidence 34445678899999999999999998888888788898
No 50
>PLN02867 Probable galacturonosyltransferase
Probab=22.00 E-value=37 Score=36.48 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=30.1
Q ss_pred cccCccccCCccEEEEecccccCCCCCHHHHHHH
Q 040488 144 RFLHPDIISDYAYVFLWDEDLGVENFNGKRYISI 177 (339)
Q Consensus 144 RfLhPdiv~~YDYIflwDDDL~vd~f~i~ry~~I 177 (339)
||+=||++.++|-|...|+|+-|.. |+..++++
T Consensus 335 RflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 335 RIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 7888999999999999999999988 88888876
No 51
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=21.43 E-value=1.1e+02 Score=26.01 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=21.8
Q ss_pred cchhhhhhcCCCCCcEEEEEEecCccCccc
Q 040488 91 ESVNKIVKKFPPSDFVVMLFHYDGVVDAWR 120 (339)
Q Consensus 91 ~~vd~~v~kf~~~nF~v~LfhYDg~vd~w~ 120 (339)
...+++.++|...+++++-+..|+..++|.
T Consensus 81 ~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~ 110 (173)
T PRK03147 81 PYMNELYPKYKEKGVEIIAVNVDETELAVK 110 (173)
T ss_pred HHHHHHHHHhhcCCeEEEEEEcCCCHHHHH
Confidence 346677888876789999999887644443
No 52
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=20.65 E-value=1e+02 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=24.9
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHH
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKE 180 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 180 (339)
+.||||++.|.|..++...+.++.+.+..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 47999999999999998888888877653
No 53
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=20.10 E-value=51 Score=31.34 Aligned_cols=95 Identities=12% Similarity=0.216 Sum_probs=50.5
Q ss_pred ccccccchhhhhhcCCC-CCcEEEEEEecCccCcccccccccceeEEEeecccchhccccccCccccCCccEEEEecccc
Q 040488 86 GIKQKESVNKIVKKFPP-SDFVVMLFHYDGVVDAWRDLEWSAHAIHVSAINQTKWWFAKRFLHPDIISDYAYVFLWDEDL 164 (339)
Q Consensus 86 G~kqk~~vd~~v~kf~~-~nF~v~LfhYDg~vd~w~d~ews~~aiHv~a~kqtKWw~akRfLhPdiv~~YDYIflwDDDL 164 (339)
..+......++|+.... ..-.=++....+...--...+|....+-|....+++=-.-.||+..+.+ +=|.|+..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i-~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEI-ETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT---SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCcccc-CcceEEEecCCc
Confidence 44444555555554422 2233233333332222223556555566666666665567788754333 579999999999
Q ss_pred cCCCCCHHHHHHHHHHh
Q 040488 165 GVENFNGKRYISIVKEE 181 (339)
Q Consensus 165 ~vd~f~i~ry~~Ivr~~ 181 (339)
.++..+++.=|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999988888744
Done!