Query 040488
Match_columns 339
No_of_seqs 140 out of 166
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qg8_A Protein (spore coat pol 91.4 0.57 2E-05 40.1 7.6 121 152-296 87-217 (255)
2 1xhb_A Polypeptide N-acetylgal 88.6 0.51 1.7E-05 45.2 5.4 40 151-190 112-151 (472)
3 2ffu_A Ppgalnact-2, polypeptid 81.3 2.1 7.2E-05 41.5 6.0 111 76-190 65-183 (501)
4 2d7i_A Polypeptide N-acetylgal 77.0 5.3 0.00018 39.9 7.5 237 76-323 111-366 (570)
5 3bcv_A Putative glycosyltransf 65.5 4.6 0.00016 33.9 3.5 109 76-189 4-120 (240)
6 4fix_A UDP-galactofuranosyl tr 52.2 16 0.00053 37.7 5.3 122 64-189 168-305 (657)
7 3f1y_A Mannosyl-3-phosphoglyce 48.4 15 0.00052 35.3 4.3 200 76-297 93-313 (387)
8 2z86_A Chondroitin synthase; G 44.5 5.6 0.00019 39.3 0.6 112 76-189 92-211 (625)
9 3l7i_A Teichoic acid biosynthe 37.2 7.1 0.00024 39.9 0.0 36 151-186 81-116 (729)
10 2c0n_A A197; thermophil protei 32.0 16 0.00056 33.2 1.5 38 142-186 45-85 (203)
11 2nxv_A ATP synthase subunits r 29.1 45 0.0015 29.0 3.9 29 152-180 73-101 (249)
12 2z86_A Chondroitin synthase; G 28.9 68 0.0023 31.6 5.5 100 76-180 374-481 (625)
13 1omz_A Alpha-1,4-N-acetylhexos 22.5 41 0.0014 31.9 2.4 106 74-181 25-134 (293)
14 1o7q_A N-acetyllactosaminide a 22.0 77 0.0026 30.3 4.2 90 76-166 48-151 (289)
15 4dix_A Plectin-related protein 20.2 59 0.002 30.1 2.8 42 91-140 105-146 (230)
No 1
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=91.45 E-value=0.57 Score=40.07 Aligned_cols=121 Identities=7% Similarity=-0.045 Sum_probs=67.6
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCccc-----CCCCCceeeeeeeeeCCceeeeeeeecccCCCccC
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKEE-GLEISQPAL-----DPDLSELHHHLTVRNNRTRVHRKIHKLISGGRKCD 225 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPAL-----d~~~S~~sh~iT~R~~~~~vHr~~~~~~~~~~~C~ 225 (339)
+..|||++.|+|..++...++++++.++++ +..+..+.. +.+ +...+.. . .+...+. .
T Consensus 87 a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~-----------~-- 150 (255)
T 1qg8_A 87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNEN-RDIVKET-V-RPAAQVT-----------W-- 150 (255)
T ss_dssp CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC----CEEEEE-E-ECCCSCB-----------S--
T ss_pred cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCC-Ccchhhc-c-CchHHHH-----------H--
Confidence 578999999999999998899999999876 666655543 222 1111110 0 0100000 0
Q ss_pred CCCCCCCccceEEEeccccCHHHHHHHhhhh----ccCCcccchhhhhhhhccCCCCCCcEEEEeeeeEEEcccc
Q 040488 226 LDSTKPPCAGFVEMMAPVFSIASWRCAWHMI----QNDLVHAWGVDFQLGYCGQGDPTKSIGIVDAEYIVHYGLP 296 (339)
Q Consensus 226 ~~~~~ppcTgFVEiMAPVFSR~Awrcvw~~i----qNDlvhGWGLDf~w~~c~~~~~~~kiGVVDa~~V~H~g~P 296 (339)
....++-..+=+|+|++++.+-..+ ..+.....+-|+.+...+.. . .++..++...+.|+..+
T Consensus 151 ------~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~-~-g~~~~~~~~~~~~r~~~ 217 (255)
T 1qg8_A 151 ------NAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNH-F-YPFYPLDEELDLNYITD 217 (255)
T ss_dssp ------CCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTT-T-CCBEEEEEEEEEEEEC-
T ss_pred ------hhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHH-h-CCEEEecCcEEEEEEcC
Confidence 0011111234578999999875222 11222334567665444432 2 36999999888887433
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=88.61 E-value=0.51 Score=45.22 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=33.9
Q ss_pred cCCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCccc
Q 040488 151 ISDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPAL 190 (339)
Q Consensus 151 v~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPAL 190 (339)
.+..|||++.|+|..++.--++++++.+++..-.+.-|.+
T Consensus 112 ~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~ 151 (472)
T 1xhb_A 112 VSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPII 151 (472)
T ss_dssp HCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred hccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeee
Confidence 3568999999999999999999999999987765655654
No 3
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=81.29 E-value=2.1 Score=41.48 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=62.9
Q ss_pred CCCcEEEEEeccccc----cchhhhhhcCCCCC--cEEEEEEecCccCccc--ccccccceeEEEeecccchhccccccC
Q 040488 76 TSMSLLAIAAGIKQK----ESVNKIVKKFPPSD--FVVMLFHYDGVVDAWR--DLEWSAHAIHVSAINQTKWWFAKRFLH 147 (339)
Q Consensus 76 ~~k~Lla~~VG~kqk----~~vd~~v~kf~~~n--F~v~LfhYDg~vd~w~--d~ews~~aiHv~a~kqtKWw~akRfLh 147 (339)
.++.-|++|+=.... ..+++++..-. .+ +.|++. =||+.|+=- .++-. .-+++...... --++.....
T Consensus 65 ~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~-~~~~~EIIvV-DDgS~D~t~~~~~~~~-~~v~vi~~~~n-~G~~~A~N~ 140 (501)
T 2ffu_A 65 LPATSVVITFHNEARSALLRTVVSVLKKSP-PHLIKEIILV-DDYSNDPEDGALLGKI-EKVRVLRNDRR-EGLMRSRVR 140 (501)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHSC-GGGEEEEEEE-ECSCSCTHHHHGGGGB-TTEEEEECSSC-CHHHHHHHH
T ss_pred CCCEEEEEEeCcCcHHHHHHHHHHHHhhCc-hhhceeEEEE-ECCCCchHHHHHHhcC-CCEEEEECCCC-cCHHHHHHH
Confidence 456667777744333 23555555432 33 455554 477766421 11111 12333221111 111211111
Q ss_pred ccccCCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCccc
Q 040488 148 PDIISDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPAL 190 (339)
Q Consensus 148 Pdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPAL 190 (339)
-=-.+..|||++.|+|..++.-.++++++.+++..-.+..|.+
T Consensus 141 G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~ 183 (501)
T 2ffu_A 141 GADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPII 183 (501)
T ss_dssp HHHHCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHhcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeee
Confidence 1123578999999999999999999999999988777777765
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=77.01 E-value=5.3 Score=39.89 Aligned_cols=237 Identities=9% Similarity=0.033 Sum_probs=109.7
Q ss_pred CCCcEEEEEecccc----ccchhhhhhcCCCCCc--EEEEEEecCccCcc-cc-cc-cc--cceeEEEeecccchhcccc
Q 040488 76 TSMSLLAIAAGIKQ----KESVNKIVKKFPPSDF--VVMLFHYDGVVDAW-RD-LE-WS--AHAIHVSAINQTKWWFAKR 144 (339)
Q Consensus 76 ~~k~Lla~~VG~kq----k~~vd~~v~kf~~~nF--~v~LfhYDg~vd~w-~d-~e-ws--~~aiHv~a~kqtKWw~akR 144 (339)
.++.-|++|+=... ...++++++.- ..++ .|++. =||+.|+= .+ ++ +. ..-|++..... .--++.-
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt-~~~~~~EIIVV-DDgS~D~tl~~~l~~~~~~~~~v~vi~~~~-n~G~~~A 187 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRS-PPELVAEIVLV-DDFSDREHLKKPLEDYMALFPSVRILRTKK-REGLIRT 187 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHS-CGGGEEEEEEE-ECSCCCGGGTHHHHHHHTTSTTEEEEECSS-CCCHHHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcC-CccCcEEEEEE-ECCCCcHHHHHHHHHHHHhCCeEEEEECCC-CCCHHHH
Confidence 45677778875543 23355555542 2343 55554 57777654 21 11 10 11244433211 1112221
Q ss_pred ccCccccCCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcccCCCC-Cceeeeee----eeeC-Ccee-eeeeeec
Q 040488 145 FLHPDIISDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPALDPDL-SELHHHLT----VRNN-RTRV-HRKIHKL 217 (339)
Q Consensus 145 fLhPdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~~-S~~sh~iT----~R~~-~~~v-Hr~~~~~ 217 (339)
...-=-.+..|||+|.|+|..++.--++++++.+++..--+..|.++.-. ..+.+... .+.. ...+ .+++..
T Consensus 188 ~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 266 (570)
T 2d7i_A 188 RMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPI- 266 (570)
T ss_dssp HHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECC-
T ss_pred HHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhccccCCccccccccccccccccc-
Confidence 11111235689999999999999999999999998765444545432110 01111110 0000 0000 000000
Q ss_pred ccCCCccCCCCCCCCccceEEEeccccCHHHHHHHhhhhccCCcccc-hhhhhhhhccCCCCCCcEEEEeeeeEEEcccc
Q 040488 218 ISGGRKCDLDSTKPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAW-GVDFQLGYCGQGDPTKSIGIVDAEYIVHYGLP 296 (339)
Q Consensus 218 ~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGW-GLDf~w~~c~~~~~~~kiGVVDa~~V~H~g~P 296 (339)
....-......|-.+.++-.-+=+|+|++++.+= .+. +....| |=|+-+..-+.. .+.+|.++....|.|..+.
T Consensus 267 --~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iG-gfD-e~~~~~g~ED~dl~~Rl~~-~G~~i~~~p~~~v~H~~r~ 341 (570)
T 2d7i_A 267 --PPELQKADPSDPFESPVMAGGLFAVDRKWFWELG-GYD-PGLEIWGGEQYEISFKVWM-CGGRMEDIPCSRVGHIYRK 341 (570)
T ss_dssp --CTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTT-SSC-TTCCSSSSHHHHHHHHHHH-TTCEEEEEEEEEEEECCCS
T ss_pred --chhhhccCCCcceecccccceEEEEEHHHHHhcC-CCC-CcccccCcchHHHHHHHHh-CCCeEEEccCeEEEEEccc
Confidence 0000000001111111221223468899999874 243 344556 344444322221 2478999999999997554
Q ss_pred ccCCcchhHHhhchHHHHHHHHHHHHH
Q 040488 297 TLGGLVAKKVRNRSYVELEIFKNRWRS 323 (339)
Q Consensus 297 tlg~~~~~~vr~r~~~E~~~F~~r~~~ 323 (339)
..+-.... ......+...|.++|..
T Consensus 342 ~~~~~~~~--~~~~~~n~~r~~~~W~d 366 (570)
T 2d7i_A 342 YVPYKVPA--GVSLARNLKRVAEVWMD 366 (570)
T ss_dssp SCCSCCCS--SCCHHHHHHHHHHHHCG
T ss_pred cCCCCCCc--hhhhHHHHHHHHHHHHH
Confidence 32211000 12334456666666644
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=65.54 E-value=4.6 Score=33.93 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=59.8
Q ss_pred CCCcEEEEEeccccccchhhhhhcC---CCCCcEEEEEEecCccCccccc--ccc--cceeEEEe-ecccchhccccccC
Q 040488 76 TSMSLLAIAAGIKQKESVNKIVKKF---PPSDFVVMLFHYDGVVDAWRDL--EWS--AHAIHVSA-INQTKWWFAKRFLH 147 (339)
Q Consensus 76 ~~k~Lla~~VG~kqk~~vd~~v~kf---~~~nF~v~LfhYDg~vd~w~d~--ews--~~aiHv~a-~kqtKWw~akRfLh 147 (339)
.++.-|++|+=. ....+.+.++-. ...+|.|++. =||+.|+=.++ ++. ..-+++.. .+.+ ++...-.
T Consensus 4 ~p~vsViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiIvv-Dd~S~d~t~~~~~~~~~~~~~i~~i~~~n~G---~~~a~N~ 78 (240)
T 3bcv_A 4 IPKVSVIVPIYN-VEKYLDQCVQALLAQTLSDIEIILI-DDESPDNCPKICDDYAAQYPNIKVIHKKNAG---LGMACNS 78 (240)
T ss_dssp CCSEEEEEEESS-CTTTHHHHHHHHHTCSSSSEEEEEE-ECCCSSSHHHHHHHHHHHCSSEEEEECCCCC---HHHHHHH
T ss_pred CCcEEEEEecCC-CHHHHHHHHHHHHhCcCCCeEEEEE-ECCCCcCHHHHHHHHHhhCCCEEEEECCCCC---hHHHHHH
Confidence 345667777733 334444443322 1246777665 47776652211 011 01133321 1222 1111101
Q ss_pred ccccCCccEEEEecccccCCCCCHHHHHHHHHHhCCcccCcc
Q 040488 148 PDIISDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEISQPA 189 (339)
Q Consensus 148 Pdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 189 (339)
-=-.+..|||++.|+|..++...++++++.+++.+.++...+
T Consensus 79 g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (240)
T 3bcv_A 79 GLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG 120 (240)
T ss_dssp HHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred HHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 111246799999999999999999999999998777766544
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=52.23 E-value=16 Score=37.74 Aligned_cols=122 Identities=7% Similarity=0.034 Sum_probs=64.7
Q ss_pred cccCCCCCCCCCCCCcEEEEEeccccccchhhhhhcCCCC-----CcEEEEEEecCccCc--ccc-ccc---ccceeEEE
Q 040488 64 SLSGKGNKKNSKTSMSLLAIAAGIKQKESVNKIVKKFPPS-----DFVVMLFHYDGVVDA--WRD-LEW---SAHAIHVS 132 (339)
Q Consensus 64 ~lw~~~~~~~~~~~k~Lla~~VG~kqk~~vd~~v~kf~~~-----nF~v~LfhYDg~vd~--w~d-~ew---s~~aiHv~ 132 (339)
--|..|.. .+..++.-|++++ ++..+.+.+.++..... ..+=+++.=||++|. -.+ .+. ...-|++.
T Consensus 168 ~~w~~~~~-~~~~pkVSVVIpt-YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI 245 (657)
T 4fix_A 168 GGWYATSP-APGTANIAVGIPT-FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIH 245 (657)
T ss_dssp EEEECSSC-CCSCCCEEEECCB-SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEE
T ss_pred eEEeCCCC-CCCCCeEEEEEEe-cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEE
Confidence 34554433 2334565555655 44455555565544321 333455666777652 111 011 11234432
Q ss_pred eecccchhccccccCc-c-ccC--CccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCcc
Q 040488 133 AINQTKWWFAKRFLHP-D-IIS--DYAYVFLWDEDLGVENFNGKRYISIVKEE-GLEISQPA 189 (339)
Q Consensus 133 a~kqtKWw~akRfLhP-d-iv~--~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPA 189 (339)
. +. .--++.-+..- . ... .+|||+|.|+|..++...++++++.++.. ...+..|.
T Consensus 246 ~-~~-N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~ 305 (657)
T 4fix_A 246 D-QP-NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQ 305 (657)
T ss_dssp E-CC-CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEE
T ss_pred E-CC-CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeE
Confidence 2 11 32333322111 1 111 68999999999999999999999999876 34455554
No 7
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=48.36 E-value=15 Score=35.26 Aligned_cols=200 Identities=13% Similarity=0.038 Sum_probs=100.4
Q ss_pred CCCcEEEEEeccccccchhhhhhcCC------CCCcEEEEEEecCccCcccccc--cccceeEEE------eecccchhc
Q 040488 76 TSMSLLAIAAGIKQKESVNKIVKKFP------PSDFVVMLFHYDGVVDAWRDLE--WSAHAIHVS------AINQTKWWF 141 (339)
Q Consensus 76 ~~k~Lla~~VG~kqk~~vd~~v~kf~------~~nF~v~LfhYDg~vd~w~d~e--ws~~aiHv~------a~kqtKWw~ 141 (339)
.++..|++|+=.. ..++..+++... ..+|.|++. =||+.|+=.++- ...+.++.. ..++.|-.=
T Consensus 93 ~p~vSVVIP~yNe-~~~l~~~l~sl~~~l~~~~~~~EIIVV-DDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A 170 (387)
T 3f1y_A 93 GLTVSAVLPSRNV-ADTVGGIIDEIHALNERAPLIDQILVV-DADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDA 170 (387)
T ss_dssp TCCEEEEEEESSC-TTTHHHHHHHHHHHHHHSCCCSEEEEE-ECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHH
T ss_pred CCeEEEEEEcCCC-HHHHHHHHHHHHHHHhcCCCCeEEEEE-cCcCCccHHHHHHHhCchhcccceeEecCCccCCHHHH
Confidence 4678888888544 455555554331 246776655 488887643321 111111100 012232111
Q ss_pred cccccCccccCCccEEEEeccccc-CCCCCHHHHHHHHHHh-CCcccCcccCCCCCceeeeeeeeeCCceeee----eee
Q 040488 142 AKRFLHPDIISDYAYVFLWDEDLG-VENFNGKRYISIVKEE-GLEISQPALDPDLSELHHHLTVRNNRTRVHR----KIH 215 (339)
Q Consensus 142 akRfLhPdiv~~YDYIflwDDDL~-vd~f~i~ry~~Ivr~~-gLeISQPALd~~~S~~sh~iT~R~~~~~vHr----~~~ 215 (339)
.+.=+ -.+.+|||++.|.|.. ++...+.++++.+.+. +..+......... ....... +.....+-+ .++
T Consensus 171 ~n~G~---~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~~~~-~~~~~~~-~~~~g~v~~~~~~~l~ 245 (387)
T 3f1y_A 171 MWRAL---SVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRPF-RKGESIE-EDGGGRVTELTAKPLF 245 (387)
T ss_dssp HHHHT---TTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEECC--------C-CBCCSHHHHHTHHHHH
T ss_pred HHHHH---HhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeecccc-ccccccc-cccCCchhhhhHHHHH
Confidence 11111 1347999999999999 8999999999988775 5666554432110 0000000 111111000 000
Q ss_pred ecccCCCccCCCCCCCCccceEEEeccccCHHHHHHHhhhhccCCcccchhhhhh-hhccCCCCCCcEEEEeeeeEEEcc
Q 040488 216 KLISGGRKCDLDSTKPPCAGFVEMMAPVFSIASWRCAWHMIQNDLVHAWGVDFQL-GYCGQGDPTKSIGIVDAEYIVHYG 294 (339)
Q Consensus 216 ~~~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~Awrcvw~~iqNDlvhGWGLDf~w-~~c~~~~~~~kiGVVDa~~V~H~g 294 (339)
... .+.-+ .... +.+||. +|+|++++.+ .+ ..|||.|..+ -+++.....++|.=|+-.+..|..
T Consensus 246 ~~~-~~~l~--~~~d-~~sG~~-----a~rR~~l~~i-~f-----~~gyg~e~ell~~~~~~~G~~~I~eVpi~~~~h~~ 310 (387)
T 3f1y_A 246 NLF-YPELA--GFVQ-PLAGEF-----VADRELFCSI-PF-----LTGYAVETGIMIDVLKKVGLGAMAQVDLGERQNRH 310 (387)
T ss_dssp HHH-CGGGT--TCSC-TTCSCE-----EEEHHHHTTS-CE-----ECSTTHHHHHHHHHHHHHCGGGEEEEEEEECCCCC
T ss_pred HHH-hHhhc--cccc-cccccE-----EEEHHHHHhC-CC-----CCCcchHHHHHHHHHHhcCCCeEEEEecceeecCC
Confidence 000 00000 0111 344442 6899999876 22 3789988665 333221112358889988888875
Q ss_pred ccc
Q 040488 295 LPT 297 (339)
Q Consensus 295 ~Pt 297 (339)
.++
T Consensus 311 ~~~ 313 (387)
T 3f1y_A 311 QHL 313 (387)
T ss_dssp CCH
T ss_pred CCH
Confidence 554
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=44.45 E-value=5.6 Score=39.32 Aligned_cols=112 Identities=12% Similarity=0.162 Sum_probs=60.0
Q ss_pred CCCcEEEEEeccccccchhhhhhcC----CCCCcEEEEEEecCccCccccc-c-ccc-ceeEEEeecccchhccccccCc
Q 040488 76 TSMSLLAIAAGIKQKESVNKIVKKF----PPSDFVVMLFHYDGVVDAWRDL-E-WSA-HAIHVSAINQTKWWFAKRFLHP 148 (339)
Q Consensus 76 ~~k~Lla~~VG~kqk~~vd~~v~kf----~~~nF~v~LfhYDg~vd~w~d~-e-ws~-~aiHv~a~kqtKWw~akRfLhP 148 (339)
.++.-|++|+=.. ...+...++.. ...++.|++.- ||+.|+=.++ + +.+ ..+++........-.+.....-
T Consensus 92 ~p~vsviIp~~n~-~~~l~~~l~sl~~q~~~~~~eiivvD-d~s~d~t~~~~~~~~~~~~i~~i~~~~~~~g~~~a~N~g 169 (625)
T 2z86_A 92 IDGLSIVIPTYNR-AKILAITLACLCNQKTIYDYEVIVAD-DGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLG 169 (625)
T ss_dssp CCCEEEEEEESSC-HHHHHHHHHHHHTCCCSSCEEEEEEE-ESCSSCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHHHH
T ss_pred CCcEEEEEecCCc-HHHHHHHHHHHHhhccCCCeEEEEEe-CCCchhHHHHHHHhhhcCCeEEEEeCCCCcchhHHHHHH
Confidence 3556677776433 34444444332 22477777765 7776653221 1 111 1233333332221111110011
Q ss_pred cccCCccEEEEecccccCCCCCHHHHHHHHHHhC-CcccCcc
Q 040488 149 DIISDYAYVFLWDEDLGVENFNGKRYISIVKEEG-LEISQPA 189 (339)
Q Consensus 149 div~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~g-LeISQPA 189 (339)
=-.+.+|||++.|+|..++.-.+.++++.+.+.. .-+.+|.
T Consensus 170 ~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~ 211 (625)
T 2z86_A 170 LRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPR 211 (625)
T ss_dssp HHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCE
T ss_pred HHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEee
Confidence 1134799999999999999999999999998743 3344443
No 9
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=37.22 E-value=7.1 Score=39.92 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred cCCccEEEEecccccCCCCCHHHHHHHHHHhCCccc
Q 040488 151 ISDYAYVFLWDEDLGVENFNGKRYISIVKEEGLEIS 186 (339)
Q Consensus 151 v~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeIS 186 (339)
.+..|||++.|+|-.++...++++++.++..++-++
T Consensus 81 ~A~gdyI~flD~Dd~~~p~~l~~l~~~l~~~d~v~~ 116 (729)
T 3l7i_A 81 EVETPYFMFLDADDELASYAITFYLEKFNNTDGLIA 116 (729)
T ss_dssp ------------------------------------
T ss_pred hccCCEEEEECCCCCCChhHHHHHHHHhcCCCEEEE
Confidence 347899999999999998888888888874444333
No 10
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=32.04 E-value=16 Score=33.25 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=28.3
Q ss_pred cccccCccccCCccEEEEeccc---ccCCCCCHHHHHHHHHHhCCccc
Q 040488 142 AKRFLHPDIISDYAYVFLWDED---LGVENFNGKRYISIVKEEGLEIS 186 (339)
Q Consensus 142 akRfLhPdiv~~YDYIflwDDD---L~vd~f~i~ry~~Ivr~~gLeIS 186 (339)
+.+||- -..|||+++.|-| ++.+..++-|++ +.|.+|.
T Consensus 45 v~~Fl~---~~~~dhllfIDAD~~~I~FdPe~V~rLl----~~g~DVV 85 (203)
T 2c0n_A 45 LDMFLE---MKDYDTLAFLDEDVVPIEIDFQKVEAKF----NEGYDVV 85 (203)
T ss_dssp HHHHHH---CTTCCEEEEECTTEEEEECCHHHHHHHH----HHTCSEE
T ss_pred HHHHHh---cCCCCEEEEEeCCCCccccCHHHHHHHH----hCCCCEE
Confidence 555652 2369999999999 888888888877 5566654
No 11
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=29.14 E-value=45 Score=29.04 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=26.6
Q ss_pred CCccEEEEecccccCCCCCHHHHHHHHHH
Q 040488 152 SDYAYVFLWDEDLGVENFNGKRYISIVKE 180 (339)
Q Consensus 152 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 180 (339)
+..|||+|.|.|..++.-.++++++.+++
T Consensus 73 A~g~yl~fln~D~~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 73 CKGRYVIFCHEDVELVDRGYDDLVAAIEA 101 (249)
T ss_dssp CCSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred cCCCEEEEECCCcccCccHHHHHHHHHHh
Confidence 46899999999999999999999999887
No 12
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=28.94 E-value=68 Score=31.55 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=52.6
Q ss_pred CCCcEEEEEeccccccchhhhhhcC---CCCCcEEEEEEecCccCcccc-c-cc--ccceeEEE-eecccchhccccccC
Q 040488 76 TSMSLLAIAAGIKQKESVNKIVKKF---PPSDFVVMLFHYDGVVDAWRD-L-EW--SAHAIHVS-AINQTKWWFAKRFLH 147 (339)
Q Consensus 76 ~~k~Lla~~VG~kqk~~vd~~v~kf---~~~nF~v~LfhYDg~vd~w~d-~-ew--s~~aiHv~-a~kqtKWw~akRfLh 147 (339)
.++.-|++++= +....+...++.. .-.+|.|++.- ||+.|+=.+ + ++ ...-+++. ..+.++ +..+..
T Consensus 374 ~~~vsiii~~y-n~~~~l~~~l~s~~~q~~~~~eiivvd-d~S~d~t~~~~~~~~~~~~~i~~~~~~n~G~---~~a~n~ 448 (625)
T 2z86_A 374 VPLVSIYIPAY-NCSKYIVRCVESALNQTITDLEVCICD-DGSTDDTLRILQEHYANHPRVRFISQKNKGI---GSASNT 448 (625)
T ss_dssp SCSEEEEEEES-SCTTTHHHHHHHHHSSSCCSEEEEEEE-ESCSSSHHHHHHHHHTTCTTEEEEEECCCCH---HHHHHH
T ss_pred CCeEEEEEeCC-CCHHHHHHHHHHHHhCcCCCeEEEEEE-CcCChhHHHHHHHHHhhCCcEEEEeCCCCCH---HHHHHH
Confidence 44566666663 3344444443322 12577776664 666664211 1 11 01123332 222222 211111
Q ss_pred ccccCCccEEEEecccccCCCCCHHHHHHHHHH
Q 040488 148 PDIISDYAYVFLWDEDLGVENFNGKRYISIVKE 180 (339)
Q Consensus 148 Pdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 180 (339)
-=-.+..|||++.|+|..++...++++++.+.+
T Consensus 449 g~~~a~g~~i~~ld~D~~~~~~~l~~~~~~~~~ 481 (625)
T 2z86_A 449 AVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRK 481 (625)
T ss_dssp HHHHCCSSEEEECCTTCEECTTHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEECCCcccChhHHHHHHHHHHh
Confidence 111347899999999999988888888877754
No 13
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=22.54 E-value=41 Score=31.92 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=61.4
Q ss_pred CCCCCcEEEEEeccccccchhhhhhcCC-CCCcEEEEEEecCccCccccccccc---ceeEEEeecccchhccccccCcc
Q 040488 74 SKTSMSLLAIAAGIKQKESVNKIVKKFP-PSDFVVMLFHYDGVVDAWRDLEWSA---HAIHVSAINQTKWWFAKRFLHPD 149 (339)
Q Consensus 74 ~~~~k~Lla~~VG~kqk~~vd~~v~kf~-~~nF~v~LfhYDg~vd~w~d~ews~---~aiHv~a~kqtKWw~akRfLhPd 149 (339)
....++-+.|-+- +......++|+... ...-+=++....+.-..--+..|.. .++.|....+.+=-+-.||+-.+
T Consensus 25 ~~~~~FTvvi~ty-~R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~~~nsLnnRF~p~~ 103 (293)
T 1omz_A 25 SALDSFTLIMQTY-NRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFP 103 (293)
T ss_dssp -CTTCEEEEEEES-SCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSCCT
T ss_pred CCCCceEEEEEee-cccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccccCCCCccEEEEeCCCCchhhccCCCc
Confidence 3445666665543 34455556666443 2344445555444211122233422 23445445554444567886433
Q ss_pred ccCCccEEEEecccccCCCCCHHHHHHHHHHh
Q 040488 150 IISDYAYVFLWDEDLGVENFNGKRYISIVKEE 181 (339)
Q Consensus 150 iv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~ 181 (339)
.-+-|.||..|||+.++..++++=|++-+++
T Consensus 104 -~i~T~AVLslDDDv~l~~~el~faF~vWr~~ 134 (293)
T 1omz_A 104 -EVETNAVLMVDDDTLISAQDLVFAFSIWQQF 134 (293)
T ss_dssp -TCCSSEEEEECTTEEECHHHHHHHHHHHTTS
T ss_pred -cCCcCEEEEEcCCCCCCHHHHHHHHHHHHHC
Confidence 3468999999999999999999988888754
No 14
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=22.04 E-value=77 Score=30.25 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCcEEEEEecccc----ccchhhhhhcCCCCCcEEEEEEecCccCccccccccc-ceeEEEeecccchh-c--cccc--
Q 040488 76 TSMSLLAIAAGIKQ----KESVNKIVKKFPPSDFVVMLFHYDGVVDAWRDLEWSA-HAIHVSAINQTKWW-F--AKRF-- 145 (339)
Q Consensus 76 ~~k~Lla~~VG~kq----k~~vd~~v~kf~~~nF~v~LfhYDg~vd~w~d~ews~-~aiHv~a~kqtKWw-~--akRf-- 145 (339)
..--|+.+++|.=. +....+.=+-| ..++.|.-+-+=...+.--.+++.. +-++|...++.+.| . +.|+
T Consensus 48 ~tIGl~vfa~GkY~~~fl~~Fl~SAEk~F-m~g~~v~YYVFTD~~~~~p~v~l~~~r~~~V~~i~~~~~W~d~sm~Rm~~ 126 (289)
T 1o7q_A 48 ITVGLTVFAVGRYIEHYLEEFLTSANKHF-MVGHPVIFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISMMRMKT 126 (289)
T ss_dssp CCEEEEEEECTTHHHHHHHHHHHHHHHHB-STTSCEEEEEEESCGGGCCCCCCCTTEEEEEEECCCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEEecccHHHHHHHHHHHHHHhc-cCCCeEEEEEEeCChhhCCccccCCCCeEEEEEeccccCCchhHHHHHHH
Confidence 34468889999744 33333333334 5778888777633333222333443 55888887888877 2 2222
Q ss_pred ----cCccccCCccEEEEecccccC
Q 040488 146 ----LHPDIISDYAYVFLWDEDLGV 166 (339)
Q Consensus 146 ----LhPdiv~~YDYIflwDDDL~v 166 (339)
..-++..+.||+|..|=|...
T Consensus 127 i~~~~~~~~~~evDYLf~~dvd~~F 151 (289)
T 1o7q_A 127 IGEHIVAHIQHEVDFLFCMDVDQVF 151 (289)
T ss_dssp HHHHHHHTHHHHCSEEEEECSSEEE
T ss_pred HHHHHHHHHhhcCCEEEEeeCCcEe
Confidence 235678899999999977543
No 15
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=20.19 E-value=59 Score=30.11 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=32.8
Q ss_pred cchhhhhhcCCCCCcEEEEEEecCccCcccccccccceeEEEeecccchh
Q 040488 91 ESVNKIVKKFPPSDFVVMLFHYDGVVDAWRDLEWSAHAIHVSAINQTKWW 140 (339)
Q Consensus 91 ~~vd~~v~kf~~~nF~v~LfhYDg~vd~w~d~ews~~aiHv~a~kqtKWw 140 (339)
..|+++++|- ...|.|++.-+.|. +|.+.++|+..+....-.
T Consensus 105 ~yVEaL~rk~-~tEFNVvv~q~nG~-------d~~s~sihvl~vgk~RiK 146 (230)
T 4dix_A 105 SYVEALVRKH-DVDFNVVVTQMSGE-------DHTSESIHLFHVGKMRIK 146 (230)
T ss_dssp HHHHHHHTTS-EEEEEEEEEEETTE-------ECCCCCEEEEEEESSEEE
T ss_pred HHHHHHhhcC-CCcEEEEEEEEcCc-------cCccceEEEEEeccEEEE
Confidence 3599999995 68999999999996 566788998775544433
Done!