Query 040489
Match_columns 413
No_of_seqs 122 out of 1479
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 14:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 9E-53 3.1E-57 420.3 24.4 365 27-412 3-383 (494)
2 3k9v_A 1,25-dihydroxyvitamin D 100.0 3.2E-51 1.1E-55 407.5 24.9 361 21-413 16-393 (482)
3 3s79_A Cytochrome P450 19A1; o 100.0 3.1E-51 1.1E-55 409.9 22.9 357 30-412 43-403 (503)
4 3pm0_A Cypib1, cytochrome P450 100.0 1.9E-51 6.6E-56 411.7 21.0 360 32-412 9-389 (507)
5 3tbg_A Cytochrome P450 2D6; mo 100.0 3.4E-50 1.2E-54 399.8 25.8 360 31-412 9-382 (479)
6 3czh_A Cytochrome P450 2R1; vi 100.0 4.1E-50 1.4E-54 399.8 23.8 360 31-412 11-383 (481)
7 3e6i_A CYPIIE1, P450-J, cytoch 100.0 2E-49 6.8E-54 394.0 26.0 356 31-412 9-377 (476)
8 2hi4_A Cytochrome P450 1A2; CY 100.0 7.1E-50 2.4E-54 399.5 22.7 357 33-412 17-392 (495)
9 3qz1_A Steroid 21-hydroxylase; 100.0 5.9E-50 2E-54 399.9 19.3 353 30-412 27-392 (496)
10 1r9o_A Cytochrome P450 2C9; mo 100.0 4.8E-49 1.6E-53 391.6 23.7 356 32-412 11-379 (477)
11 1po5_A Cytochrome P450 2B4; ox 100.0 2.7E-49 9.3E-54 393.3 21.6 356 32-412 10-378 (476)
12 2fdv_A Cytochrome P450 2A6; CY 100.0 7E-49 2.4E-53 390.4 23.5 356 32-412 10-378 (476)
13 3nxu_A Cytochrome P450 3A4; al 100.0 1.1E-49 3.7E-54 396.9 16.1 354 32-412 14-381 (485)
14 3n9y_A Cholesterol SIDE-chain 100.0 6.1E-48 2.1E-52 384.5 24.9 361 32-413 9-385 (487)
15 2ij2_A Cytochrome P450 BM3; mo 100.0 2.3E-48 7.8E-53 386.1 20.1 353 32-412 3-362 (470)
16 3ld6_A Lanosterol 14-alpha dem 100.0 3.8E-49 1.3E-53 390.7 14.0 346 32-412 11-362 (461)
17 3gw9_A Sterol 14alpha-demethyl 100.0 4.1E-48 1.4E-52 381.7 18.4 353 31-412 2-362 (450)
18 2cib_A Cytochrome P450 51; hem 100.0 4.6E-47 1.6E-51 375.2 20.5 345 32-412 4-354 (455)
19 2ve3_A Putative cytochrome P45 100.0 1.2E-46 4.1E-51 371.0 20.4 338 32-412 12-351 (444)
20 3i3k_A Lanosterol 14-alpha dem 100.0 4E-46 1.4E-50 369.0 13.9 345 32-412 11-362 (461)
21 3dbg_A Putative cytochrome P45 100.0 8.5E-46 2.9E-50 367.3 15.1 344 32-412 23-371 (467)
22 3mdm_A Cholesterol 24-hydroxyl 100.0 3.9E-44 1.3E-48 354.1 20.8 333 54-412 10-352 (456)
23 3v8d_A Cholesterol 7-alpha-mon 100.0 1.6E-42 5.4E-47 345.9 8.3 359 23-412 4-379 (491)
24 3dax_A Cytochrome P450 7A1; ch 100.0 1.1E-41 3.8E-46 339.6 11.6 350 31-412 12-379 (491)
25 2cd8_A Cytochrome P450 monooxy 100.0 1.4E-39 4.8E-44 319.6 21.5 313 32-412 26-344 (436)
26 1jfb_A Nitric-oxide reductase 100.0 1.2E-38 4.2E-43 310.0 24.7 314 33-412 2-321 (404)
27 3b6h_A Prostacyclin synthase; 100.0 2.2E-39 7.4E-44 323.7 16.0 350 30-412 16-383 (498)
28 3dsk_A Cytochrome P450 74A, ch 100.0 2.8E-39 9.4E-44 322.8 14.4 351 31-412 27-398 (495)
29 1izo_A P450bsbeta, cytochrome 100.0 2.3E-37 8E-42 302.3 22.6 316 37-412 5-323 (417)
30 1ued_A P450 OXYC, P450 monooxy 100.0 1.8E-37 6.3E-42 301.9 21.1 306 31-412 9-326 (406)
31 1n97_A CYP175A1; electron tran 100.0 1.7E-38 5.7E-43 307.5 12.5 298 35-412 2-301 (389)
32 1cpt_A Cytochrome P450-TERP; o 100.0 2E-37 6.7E-42 303.7 19.2 325 32-412 6-347 (428)
33 3awm_A Fatty acid alpha-hydrox 100.0 1.8E-36 6.3E-41 295.7 24.5 315 34-412 4-321 (415)
34 3b98_A Prostaglandin I2 syntha 100.0 2.2E-38 7.4E-43 314.5 10.2 341 30-412 16-364 (475)
35 3dan_A Cytochrome P450 74A2; A 100.0 5.3E-38 1.8E-42 311.6 12.8 350 32-412 9-381 (473)
36 2zbx_A Cytochrome P450-SU1; be 100.0 4.9E-36 1.7E-40 292.4 24.6 311 32-412 5-325 (412)
37 3oo3_A OXY protein; cytochrome 100.0 1E-35 3.5E-40 287.5 22.1 291 54-412 12-307 (384)
38 2jjn_A Cytochrome P450 113A1; 100.0 2.7E-36 9.3E-41 294.1 18.2 315 15-412 5-321 (411)
39 2zwu_A Camphor 5-monooxygenase 100.0 5.6E-36 1.9E-40 292.0 19.9 309 31-412 10-328 (415)
40 3aba_A Cytochrome P450; oxidor 100.0 3.4E-35 1.2E-39 285.5 23.3 292 55-412 20-318 (403)
41 1s1f_A Putative cytochrome P45 100.0 1.1E-35 3.6E-40 289.4 19.7 308 30-412 6-323 (406)
42 2wm5_A CYP124, putative cytoch 100.0 4.4E-35 1.5E-39 287.5 22.8 300 55-412 45-355 (435)
43 2y5n_A MYCG, P-450-like protei 100.0 1E-34 3.5E-39 283.3 22.6 293 54-412 37-336 (417)
44 3a4g_A Vitamin D hydroxylase; 100.0 1.1E-34 3.8E-39 282.6 21.6 292 54-412 20-317 (411)
45 1q5d_A P450 epoxidase; cytochr 100.0 4.5E-35 1.5E-39 286.2 18.7 299 54-412 26-335 (419)
46 2xkr_A CYP142, putative cytoch 100.0 1.8E-34 6.2E-39 280.0 22.3 291 54-412 18-310 (398)
47 3tyw_A Putative cytochrome P45 100.0 2E-34 7E-39 281.4 22.4 293 54-412 29-330 (417)
48 2z3t_A Cytochrome P450; monoxy 100.0 1.8E-34 6.2E-39 282.3 21.3 297 55-412 21-334 (425)
49 3ivy_A Cytochrome P450 CYP125; 100.0 2.1E-34 7.3E-39 282.5 21.8 312 32-412 18-346 (433)
50 1odo_A Putative cytochrome P45 100.0 9.7E-35 3.3E-39 282.8 18.8 298 54-412 15-324 (408)
51 2z36_A MOXA, cytochrome P450 t 100.0 2.8E-34 9.6E-39 279.9 21.8 292 55-412 23-326 (413)
52 3ejb_B Biotin biosynthesis cyt 100.0 2.1E-34 7E-39 280.2 20.7 296 55-412 14-314 (404)
53 3abb_A CYP105D6, cytochrome P4 100.0 8E-35 2.7E-39 283.4 17.3 291 54-412 24-323 (408)
54 3tkt_A Cytochrome P450; aromat 100.0 3.8E-34 1.3E-38 282.0 22.2 305 56-412 47-369 (450)
55 1z8o_A 6-deoxyerythronolide B 100.0 1.6E-34 5.3E-39 281.0 18.8 292 54-412 14-321 (404)
56 2uuq_A CYP130, cytochrome P450 100.0 1.4E-34 4.8E-39 282.1 18.4 295 54-412 25-330 (414)
57 4fb2_A P450CIN; heme, monooxyg 100.0 1.3E-34 4.5E-39 281.0 18.0 289 54-412 19-311 (398)
58 1gwi_A CYP154C1, cytochrome P4 100.0 6.8E-34 2.3E-38 277.1 19.8 293 54-412 17-323 (411)
59 2xbk_A PIMD protein; epoxidati 100.0 2.7E-33 9.2E-38 272.1 23.0 284 55-412 27-323 (404)
60 2dkk_A Cytochrome P450; CYP158 100.0 1.4E-33 4.8E-38 274.7 19.4 292 53-412 26-326 (411)
61 3buj_A CALO2; heme, iron, meta 100.0 8.2E-34 2.8E-38 275.3 17.2 292 55-412 14-313 (397)
62 3r9b_A Cytochrome P450 164A2; 100.0 5.7E-34 2E-38 278.3 15.4 300 54-412 29-336 (418)
63 1lfk_A OXYB, P450 monooxygenas 100.0 1.6E-33 5.6E-38 273.3 16.6 284 61-412 20-317 (398)
64 3lxh_A Cytochrome P450; heme, 100.0 3.5E-33 1.2E-37 272.9 18.3 295 54-412 38-335 (421)
65 3nc3_A Cytochrome P450 CYPX; c 100.0 1.7E-33 5.9E-38 276.6 15.9 294 55-412 54-349 (441)
66 3mgx_A Putative P450 monooxyge 100.0 2.2E-33 7.5E-38 273.6 16.4 291 54-412 37-334 (415)
67 1n40_A P450 MT2, cytochrome P4 100.0 3.3E-33 1.1E-37 271.0 16.6 290 54-412 16-314 (396)
68 3oft_A Cytochrome P450, CYP101 100.0 4.3E-33 1.5E-37 270.1 17.4 288 54-412 24-313 (396)
69 3rwl_A Cytochrome P450 alkane 100.0 5.8E-31 2E-35 257.4 23.3 297 54-412 38-345 (426)
70 2rfb_A Cytochrome P450; heme, 100.0 2.1E-31 7.1E-36 253.3 16.2 262 65-412 2-266 (343)
71 3p3o_A Cytochrome P450; monoox 100.0 4.7E-32 1.6E-36 264.5 9.9 294 55-412 34-334 (416)
72 1io7_A Cytochrome P450 CYP119; 100.0 6E-31 2.1E-35 252.5 15.3 275 57-412 2-287 (368)
73 2wiy_A XPLA-heme, cytochrome P 100.0 1.7E-30 5.7E-35 251.7 18.5 292 55-412 21-313 (394)
74 3b4x_A 367AA long hypothetical 100.0 7E-31 2.4E-35 252.0 13.9 275 57-412 2-287 (367)
75 4dnj_A Putative cytochrome P45 99.9 2.4E-27 8.1E-32 230.8 16.9 308 37-412 17-331 (412)
76 4dxy_A Cytochrome P450, CYP101 99.9 2.8E-22 9.5E-27 195.0 21.8 296 54-412 37-334 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 99.8 2E-21 6.9E-26 185.6 -7.0 258 33-412 35-302 (381)
78 3lqv_A PRE-mRNA branch site pr 69.3 17 0.00059 26.8 7.3 57 33-94 3-65 (115)
79 1s79_A Lupus LA protein; RRM, 62.6 16 0.00055 26.6 5.7 50 41-95 14-71 (103)
80 2diu_A KIAA0430 protein; struc 61.8 13 0.00045 26.9 4.8 62 41-104 12-75 (96)
81 1iqt_A AUF1, heterogeneous nuc 53.7 16 0.00055 24.3 4.1 51 42-97 3-62 (75)
82 2pe8_A Splicing factor 45; RRM 52.3 19 0.00065 26.4 4.5 69 34-102 4-83 (105)
83 3ue2_A Poly(U)-binding-splicin 49.2 34 0.0012 25.7 5.6 67 37-103 19-99 (118)
84 2wbr_A GW182, gawky, LD47780P; 47.7 39 0.0013 24.1 5.3 51 38-93 7-60 (89)
85 2dnz_A Probable RNA-binding pr 47.1 67 0.0023 22.3 6.9 59 40-103 7-75 (95)
86 1whx_A Hypothetical protein ri 46.4 61 0.0021 23.7 6.7 58 41-103 13-74 (111)
87 4fxv_A ELAV-like protein 1; RN 46.3 31 0.0011 24.7 4.9 49 42-95 23-80 (99)
88 2mss_A Protein (musashi1); RNA 46.0 25 0.00085 23.4 4.1 47 43-94 4-59 (75)
89 4f25_A Polyadenylate-binding p 45.7 37 0.0012 25.1 5.4 56 42-102 9-72 (115)
90 3s6e_A RNA-binding protein 39; 45.5 18 0.00063 27.0 3.5 69 34-102 3-82 (114)
91 1whv_A Poly(A)-specific ribonu 44.3 51 0.0018 23.9 5.4 38 57-94 29-67 (100)
92 2cqc_A Arginine/serine-rich sp 44.0 52 0.0018 22.9 5.8 57 34-95 11-76 (95)
93 3ex7_B RNA-binding protein 8A; 42.6 68 0.0023 23.8 6.6 58 41-103 25-92 (126)
94 3beg_B Splicing factor, argini 42.5 55 0.0019 24.1 5.9 58 41-103 19-79 (115)
95 1p27_B RNA-binding protein 8A; 42.1 59 0.002 23.2 6.0 49 41-94 26-83 (106)
96 3ns6_A Eukaryotic translation 41.9 81 0.0028 22.4 6.6 55 40-94 8-72 (100)
97 2d9p_A Polyadenylate-binding p 41.8 74 0.0025 22.6 6.4 63 35-102 12-82 (103)
98 2kvi_A Nuclear polyadenylated 41.2 66 0.0022 22.6 6.0 58 41-103 13-73 (96)
99 2kxn_B Transformer-2 protein h 41.2 1.1E+02 0.0038 23.0 8.0 54 37-95 45-107 (129)
100 3d2w_A TAR DNA-binding protein 39.9 53 0.0018 22.9 5.2 53 35-92 8-64 (89)
101 1whw_A Hypothetical protein ri 38.8 75 0.0026 22.3 6.0 50 40-94 10-68 (99)
102 3mdf_A Peptidyl-prolyl CIS-tra 38.1 90 0.0031 21.0 6.2 52 38-94 7-67 (85)
103 2dh8_A DAZ-associated protein 36.9 81 0.0028 22.4 6.0 60 39-103 17-85 (105)
104 2nlw_A Eukaryotic translation 36.4 1.1E+02 0.0037 21.9 6.6 63 40-102 17-88 (105)
105 4a8x_A RNA-binding protein wit 36.2 83 0.0028 21.3 5.8 54 42-100 8-72 (88)
106 3zzy_A Polypyrimidine tract-bi 36.0 51 0.0018 25.3 4.8 63 34-101 22-92 (130)
107 2cq3_A RNA-binding protein 9; 36.0 1.1E+02 0.0039 21.5 7.0 58 40-102 17-82 (103)
108 1x5u_A Splicing factor 3B subu 35.6 1.2E+02 0.004 21.5 7.9 51 40-95 17-76 (105)
109 1sjq_A Polypyrimidine tract-bi 35.6 79 0.0027 23.1 5.6 55 35-94 13-70 (105)
110 1oo0_B CG8781-PA, drosophila Y 35.6 82 0.0028 22.6 5.9 49 41-94 29-86 (110)
111 1m46_B IQ4, IQ4 motif from MYO 35.0 27 0.00094 17.6 1.9 12 333-344 8-19 (26)
112 3md1_A Nuclear and cytoplasmic 34.9 58 0.002 21.9 4.6 49 42-95 5-62 (83)
113 2cph_A RNA binding motif prote 34.8 1.2E+02 0.0041 21.5 8.5 59 40-103 17-87 (107)
114 3v4m_A Splicing factor U2AF 65 34.3 90 0.0031 22.6 5.8 48 56-103 28-87 (105)
115 3ucg_A Polyadenylate-binding p 34.2 57 0.0019 22.3 4.6 54 42-100 10-72 (89)
116 1nu4_A U1A RNA binding domain; 34.2 99 0.0034 21.4 6.0 55 40-95 10-70 (97)
117 2dgu_A Heterogeneous nuclear r 34.0 80 0.0027 22.4 5.5 56 41-101 14-71 (103)
118 3s7r_A Heterogeneous nuclear r 33.9 61 0.0021 22.1 4.7 52 40-96 13-73 (87)
119 2cqi_A Nucleolysin TIAR; RNA r 33.3 67 0.0023 22.8 5.0 50 40-94 17-73 (103)
120 2cq4_A RNA binding motif prote 32.8 60 0.0021 23.6 4.7 51 42-97 29-88 (114)
121 2do4_A Squamous cell carcinoma 32.6 1.3E+02 0.0043 21.1 6.8 51 40-95 19-77 (100)
122 3bs9_A Nucleolysin TIA-1 isofo 32.5 78 0.0027 21.4 5.1 50 41-95 9-67 (87)
123 2dgv_A HnRNP M, heterogeneous 32.2 1.2E+02 0.0041 20.7 6.7 58 41-103 11-76 (92)
124 1sjr_A Polypyrimidine tract-bi 32.2 83 0.0028 25.2 5.6 54 42-100 50-109 (164)
125 2jwn_A Embryonic polyadenylate 31.5 55 0.0019 24.3 4.4 55 42-101 40-103 (124)
126 2dgx_A KIAA0430 protein; RRM d 31.4 1E+02 0.0034 21.6 5.6 53 41-94 12-70 (96)
127 2dgs_A DAZ-associated protein 31.3 1.3E+02 0.0046 20.9 7.0 59 40-103 12-79 (99)
128 2e5h_A Zinc finger CCHC-type a 31.1 1.3E+02 0.0044 20.7 6.6 52 38-94 16-76 (94)
129 2jrs_A RNA-binding protein 39; 31.0 1.3E+02 0.0046 21.6 6.4 49 41-94 29-86 (108)
130 1x5p_A Negative elongation fac 31.0 1.3E+02 0.0046 20.8 6.9 49 40-95 17-68 (97)
131 2krb_A Eukaryotic translation 30.9 1.2E+02 0.0041 20.2 6.1 38 57-94 21-65 (81)
132 2cpf_A RNA binding motif prote 30.8 1E+02 0.0036 21.4 5.6 56 41-101 8-76 (98)
133 2hvz_A Splicing factor, argini 30.8 59 0.002 23.0 4.3 48 42-94 4-55 (101)
134 2a3j_A U1 small nuclear ribonu 30.7 1.1E+02 0.0039 23.0 6.0 62 41-103 32-100 (127)
135 1x4c_A Splicing factor, argini 30.7 1.5E+02 0.005 21.2 7.0 50 41-95 18-69 (108)
136 1x5s_A Cold-inducible RNA-bind 30.3 1.3E+02 0.0044 21.1 6.1 59 39-102 13-81 (102)
137 2rs2_A Musashi-1, RNA-binding 30.0 1E+02 0.0035 22.3 5.5 53 40-97 27-88 (109)
138 2xnq_A Nuclear polyadenylated 29.9 1.4E+02 0.0046 21.0 6.1 49 41-94 25-75 (97)
139 3s8s_A Histone-lysine N-methyl 29.8 96 0.0033 22.6 5.4 49 41-94 9-66 (110)
140 2dhg_A TRNA selenocysteine ass 28.8 1.5E+02 0.0052 20.8 6.9 56 35-95 6-70 (104)
141 1wi8_A EIF-4B, eukaryotic tran 28.7 1.3E+02 0.0046 21.2 6.0 63 34-102 11-83 (104)
142 2la6_A RNA-binding protein FUS 28.7 1.3E+02 0.0043 21.1 5.8 53 37-94 12-81 (99)
143 1rk8_A CG8781-PA, CG8781-PA pr 28.5 85 0.0029 24.7 5.2 55 41-100 75-139 (165)
144 1wg5_A Heterogeneous nuclear r 28.4 1.6E+02 0.0054 20.9 6.5 59 40-103 17-84 (104)
145 2dnm_A SRP46 splicing factor; 28.3 1.5E+02 0.0053 20.7 6.8 57 41-102 16-82 (103)
146 1x4e_A RNA binding motif, sing 28.2 71 0.0024 21.6 4.2 50 40-94 7-65 (85)
147 2kn4_A Immunoglobulin G-bindin 28.1 2E+02 0.0068 22.1 7.4 58 40-102 72-139 (158)
148 2jvr_A Nucleolar protein 3; RN 27.8 94 0.0032 22.8 4.9 50 41-95 31-86 (111)
149 3ulh_A THO complex subunit 4; 27.4 1.1E+02 0.0036 21.8 5.2 51 40-95 31-89 (107)
150 1x4g_A Nucleolysin TIAR; struc 27.4 1.1E+02 0.0039 21.8 5.4 56 41-101 28-87 (109)
151 3ctr_A Poly(A)-specific ribonu 27.3 30 0.001 25.2 1.9 39 57-95 19-58 (101)
152 2dit_A HIV TAT specific factor 27.2 89 0.0031 22.7 4.8 70 33-102 10-91 (112)
153 1x4b_A Heterogeneous nuclear r 27.0 50 0.0017 24.2 3.4 54 42-100 31-93 (116)
154 2ywk_A Putative RNA-binding pr 26.7 1E+02 0.0034 21.3 4.9 50 40-94 18-75 (95)
155 1x4d_A Matrin 3; structural ge 26.5 98 0.0034 22.4 4.8 55 35-94 12-70 (102)
156 2dgo_A Cytotoxic granule-assoc 26.0 1.8E+02 0.0063 20.8 6.7 54 37-95 14-76 (115)
157 2div_A TRNA selenocysteine ass 25.4 1.6E+02 0.0053 20.5 5.8 54 36-94 7-70 (99)
158 4f4s_A ATP synthase subunit 9, 25.2 74 0.0025 21.8 3.5 23 318-340 27-49 (76)
159 1uaw_A Mouse-musashi-1; RNP-ty 25.2 59 0.002 21.5 3.2 49 42-95 4-61 (77)
160 1p1t_A Cleavage stimulation fa 25.2 93 0.0032 21.9 4.5 48 42-94 12-68 (104)
161 2cqd_A RNA-binding region cont 25.1 1.1E+02 0.0037 22.2 5.0 50 41-95 20-78 (116)
162 2voo_A Lupus LA protein; RNA-b 24.9 86 0.0029 25.7 4.7 49 42-95 113-169 (193)
163 2dis_A Unnamed protein product 24.9 1.7E+02 0.0057 20.8 6.0 50 41-95 11-71 (109)
164 2err_A Ataxin-2-binding protei 24.8 65 0.0022 23.3 3.6 49 41-94 32-87 (109)
165 2qfj_A FBP-interacting repress 24.7 1.6E+02 0.0055 23.8 6.6 48 42-94 32-88 (216)
166 2cpi_A CCR4-NOT transcription 24.6 1E+02 0.0034 22.3 4.6 59 40-103 17-91 (111)
167 2fy1_A RNA-binding motif prote 24.2 1.6E+02 0.0056 21.4 5.8 58 41-103 10-76 (116)
168 1u6f_A Tcubp1, RNA-binding pro 23.8 1.3E+02 0.0044 22.7 5.3 56 42-102 46-111 (139)
169 2x1f_A MRNA 3'-END-processing 23.7 1.8E+02 0.0063 20.0 5.9 48 42-94 6-62 (96)
170 3n9u_C Cleavage and polyadenyl 23.7 1.2E+02 0.004 23.8 5.2 49 42-95 59-118 (156)
171 2d9o_A DNAJ (HSP40) homolog, s 23.5 2E+02 0.007 20.5 6.0 40 56-95 30-73 (100)
172 2ytc_A PRE-mRNA-splicing facto 23.4 1.7E+02 0.0058 19.5 6.7 50 40-94 14-66 (85)
173 2dnq_A RNA-binding protein 4B; 23.4 1.8E+02 0.0061 19.7 6.7 50 40-94 10-60 (90)
174 2cpj_A Non-POU domain-containi 23.2 1.7E+02 0.0057 20.4 5.6 57 41-102 18-78 (99)
175 2ad9_A Polypyrimidine tract-bi 22.9 1.2E+02 0.0042 22.6 4.8 51 39-94 32-85 (119)
176 1d8j_A General transcription f 22.9 30 0.001 24.1 1.1 37 294-335 29-66 (81)
177 2cpx_A Hypothetical protein FL 22.5 1.2E+02 0.004 21.9 4.7 54 37-95 24-86 (115)
178 2dnh_A Bruno-like 5, RNA bindi 22.4 1.3E+02 0.0045 21.2 4.9 49 41-94 18-74 (105)
179 2cq1_A PTB-like protein L; RRM 22.3 1.8E+02 0.006 20.8 5.5 51 39-94 16-69 (101)
180 2do0_A HnRNP M, heterogeneous 22.2 1.3E+02 0.0043 21.7 4.8 57 40-101 17-82 (114)
181 2cpd_A Apobec-1 stimulating pr 22.2 1.9E+02 0.0063 20.1 5.6 57 40-101 17-77 (99)
182 1wex_A Hypothetical protein (r 22.0 1.6E+02 0.0055 21.1 5.2 51 39-94 16-69 (104)
183 2dnp_A RNA-binding protein 14; 21.9 1.9E+02 0.0066 19.6 6.8 57 40-101 11-69 (90)
184 2adc_A Polypyrimidine tract-bi 21.8 2.1E+02 0.0073 23.7 6.8 58 41-103 37-100 (229)
185 3p5t_L Cleavage and polyadenyl 21.5 83 0.0029 21.7 3.5 48 42-94 5-63 (90)
186 2e5g_A U6 snRNA-specific termi 21.4 1.4E+02 0.0049 20.5 4.8 56 42-102 12-71 (94)
187 3r27_A HnRNP L, heterogeneous 21.1 2.4E+02 0.008 20.3 6.1 53 37-94 20-75 (100)
188 1l3k_A Heterogeneous nuclear r 21.1 1.1E+02 0.0037 24.5 4.6 55 42-101 108-171 (196)
189 1l3k_A Heterogeneous nuclear r 21.0 1.2E+02 0.0042 24.1 4.9 53 40-97 15-76 (196)
190 3pgw_S U1-70K; protein-RNA com 20.7 1.7E+02 0.0058 27.5 6.4 58 39-101 103-170 (437)
191 2cpz_A CUG triplet repeat RNA- 20.7 1.7E+02 0.0057 21.1 5.2 50 41-95 28-86 (115)
192 2i2y_A Fusion protein consists 20.6 2.8E+02 0.0097 21.0 7.5 50 40-94 75-128 (150)
193 3md3_A Nuclear and cytoplasmic 20.6 1.2E+02 0.0041 23.3 4.7 54 42-100 4-66 (166)
194 2cjk_A Nuclear polyadenylated 20.5 1.1E+02 0.0037 23.6 4.4 51 41-96 90-149 (167)
195 2jvo_A Nucleolar protein 3; nu 20.4 1.7E+02 0.0059 21.0 5.2 54 42-100 35-90 (108)
196 3ks4_A Polymerase cofactor VP3 20.4 1.1E+02 0.0039 23.9 4.0 82 294-376 60-163 (184)
197 2j76_E EIF-4B, EIF4B, eukaryot 20.3 1.8E+02 0.0063 20.3 5.3 55 42-102 23-87 (100)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=9e-53 Score=420.27 Aligned_cols=365 Identities=21% Similarity=0.347 Sum_probs=273.3
Q ss_pred CCCCCCCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCC
Q 040489 27 PKYKTNLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRP 106 (413)
Q Consensus 27 ~~~~~~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~ 106 (413)
+++..++||||+++|++||++++.. .+.++..+.+|+++||+||++++|+.++|+++||++++++|.+++..|.+|+..
T Consensus 3 k~~~~~~PPgP~~lPliGnl~~l~~-~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~ 81 (494)
T 3swz_A 3 KKTGAKYPKSLLSLPLVGSLPFLPR-HGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQM 81 (494)
T ss_dssp ---------CCBCCCEEEEESSCTT-SSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCC
T ss_pred CCCCCCCCCCCCCCCeEcchHHhCC-CCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCc
Confidence 4445578999999999999998753 235788999999999999999999999999999999999999888889888754
Q ss_pred CCCcccccCCCcceEeccCChhHHHHHHHHhhhhcCH--HHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHH
Q 040489 107 LPTSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHP--SRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQ 184 (413)
Q Consensus 107 ~~~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~ 184 (413)
. ....++.++.++.+..+|+.|+++||.+. +.|+. ..++.+.+.+.++++.+++.|... .+ .++|+.+.+.
T Consensus 82 ~-~~~~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~---~~vd~~~~~~ 154 (494)
T 3swz_A 82 A-TLDIASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLATH--NG---QSIDISFPVF 154 (494)
T ss_dssp H-HHHHHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHHT--TT---EEECCHHHHH
T ss_pred H-HHHHhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHc--CC---CcccHHHHHH
Confidence 2 22334433345655567999999999875 66764 457778999999999999988753 23 6899999999
Q ss_pred HHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040489 185 YAMFCLLVLMCFGDKLDE--SQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARK 262 (413)
Q Consensus 185 ~~~~~vi~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~ 262 (413)
.+++|+|+.++||.+++. +....+......+........+.+++|++..++ ....++..+..+...+++..++++++
T Consensus 155 ~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p-~~~~~~~~~~~~~~~~~~~~~i~~~~ 233 (494)
T 3swz_A 155 VAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFP-NKTLEKLKSHVKIRNDLLNKILENYK 233 (494)
T ss_dssp HHHHHHHHHHHHSCCCCTTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSC-CSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998843 222333333333333333344567778775433 22334445555666677777777665
Q ss_pred HhhhhhhhhhhhhhhhhhHHHHHHhccCCc---------ccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChH
Q 040489 263 KMKEEESLSIKEREYVLSYVDTLLDLQLPE---------EKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPH 333 (413)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~---------~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~ 333 (413)
+... .+...|+++.|++...+. ++..+++++|.+++.++++||+||||++++|++++|++||+
T Consensus 234 ~~~~--------~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~ 305 (494)
T 3swz_A 234 EKFR--------SDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQ 305 (494)
T ss_dssp TTCC--------TTCCCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred Hhhc--------ccchhHHHHHHHHHHHhhhcccccccccccccCHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCHH
Confidence 4321 112348999998753210 12358999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeee
Q 040489 334 VQETVYTEIRGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINI 410 (413)
Q Consensus 334 vq~Kl~eEi~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
+|+|+++||++++|.+.. +++.+||||+|||+|+||+|||+|+.+||++.+ +..-.+++.++++.|..+.|++
T Consensus 306 ~q~kl~~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~~~~r~~~~----d~~~~g~~ip~Gt~v~~~~~~~ 381 (494)
T 3swz_A 306 VKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANV----DSSIGEFAVDKGTEVIINLWAL 381 (494)
T ss_dssp HHHHHHHHHHHHTCSSSCCCGGGGGTCHHHHHHHHHHHHHSCSSTTCSCEECSS----SEEETTEEECTTCEEEECHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHhcCHHHHHHHHHHHHhcCCcccccceecCC----CceECCEEeCCCCEEEEehHHh
Confidence 999999999999986543 889999999999999999999999988887753 2233578899999999998887
Q ss_pred ec
Q 040489 411 VR 412 (413)
Q Consensus 411 ~~ 412 (413)
-|
T Consensus 382 ~~ 383 (494)
T 3swz_A 382 HH 383 (494)
T ss_dssp HH
T ss_pred hC
Confidence 65
No 2
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=100.00 E-value=3.2e-51 Score=407.46 Aligned_cols=361 Identities=17% Similarity=0.249 Sum_probs=269.8
Q ss_pred hhhhcCCCCCCCCCCCCCcccccccchhhhhc--cCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCc
Q 040489 21 ISVIISPKYKTNLPPGPFNLPVIGNLQWLLKS--FSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGA 98 (413)
Q Consensus 21 ~~~~~~~~~~~~~~PgP~~~pl~G~l~~~~~~--~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~ 98 (413)
+.++.+|. +.+|||+++|++||++++... .++++..+.+++++||+|+++++|+.++|+++||+++++|+.++ .
T Consensus 16 ~~~~~~pl---~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~ 91 (482)
T 3k9v_A 16 TDGETRNV---TDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-S 91 (482)
T ss_dssp ---CCEEG---GGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-C
T ss_pred cccccCCC---CCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-C
Confidence 44456555 459999999999999988642 23678899999999999999999999999999999999999864 4
Q ss_pred ccccCCCCCC---CcccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhcc-CCCCC
Q 040489 99 IFADRPRPLP---TSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESK-NGDRP 174 (413)
Q Consensus 99 ~f~~r~~~~~---~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 174 (413)
.|.+++.... .....+ .+.++. ..+|+.|+++||.+.+.+++++.++.+.+.+++.++.+++.|..... .|
T Consensus 92 ~~~~r~~~~~~~~~~~~~~-~~~~l~-~~~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g--- 166 (482)
T 3k9v_A 92 AHPQRLEIKPWKAYRDHRN-EAYGLM-ILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERG--- 166 (482)
T ss_dssp SSCCCCCCHHHHHHHHHHT-CCCCTT-TCCHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTS---
T ss_pred CCCCCCCchHHHHHHHhcC-CCCCce-eCCCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 6766653211 011111 223443 35799999999998755568999999999999999999999987643 23
Q ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHHHHHhcCCccccccc-ccchhhchhHHHHHHHHH
Q 040489 175 VPVRVLDHFQYAMFCLLVLMCFGDKLDE------SQIKKIENVQRTQLLAFGNFNILNFWP-RLSKIVFVKKWEQFLQMR 247 (413)
Q Consensus 175 ~~vd~~~~~~~~~~~vi~~~~fG~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~~~~~~~ 247 (413)
.++|+.+++..+++|+|+.++||.+++. .....+............ ....+| ++..++..+.+++..+..
T Consensus 167 ~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~l~~~~~~~~~~~~ 243 (482)
T 3k9v_A 167 RIPDLYSELNKWSFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFG---KMMVTPVELHKRLNTKVWQAHTLAW 243 (482)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTTGG---GGSSSCHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHHHH---HHHhhhHHHHHhcCCHHHHHHHHHH
Confidence 5799999999999999999999998831 112233333333322221 112233 222223334455555556
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 040489 248 RDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMAN 327 (413)
Q Consensus 248 ~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~ 327 (413)
+.+.+++.++++++++.... +...|+++.++.. ..++++++.+++.++++||+|||+++++|++|+
T Consensus 244 ~~~~~~~~~~i~~r~~~~~~--------~~~~d~l~~ll~~------~~l~~~ei~~~~~~~~~AG~dTta~~l~~~l~~ 309 (482)
T 3k9v_A 244 DTIFKSVKPCIDNRLQRYSQ--------QPGADFLCDIYQQ------DHLSKKELYAAVTELQLAAVETTANSLMWILYN 309 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--------CTTSCHHHHHHHH------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--------CCchHHHHHHHhc------cCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66777777888877644311 1123788887752 248999999999999999999999999999999
Q ss_pred HhhChHHHHHHHHHHHhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhcccccccccccccccc
Q 040489 328 LVKHPHVQETVYTEIRGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVV 403 (413)
Q Consensus 328 La~~P~vq~Kl~eEi~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~ 403 (413)
|++||++|+|+++||++++|++.. +++.+||||+|||+||||+|||+|+ ++|.+. +..+ .+.+.+++++|
T Consensus 310 L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~l~~lpyl~avi~E~lRl~p~~~~-~~r~~~~d~~~-----~g~~ip~Gt~v 383 (482)
T 3k9v_A 310 LSRNPQAQRRLLQEVQSVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSVPF-TTRTLDKPTVL-----GEYALPKGTVL 383 (482)
T ss_dssp HHTCHHHHHHHHHHHHHHSCTTCCCCGGGGGGCHHHHHHHHHHHHHSCSCCE-EEEECSSCEEE-----TTEEECTTCEE
T ss_pred HHhCHHHHHHHHHHHHHHhCCCCCCCHHHHhhCHHHHHHHHHHhhcCCCCcC-cccccCCceee-----CCEEECCCCEE
Confidence 999999999999999999986543 8899999999999999999999998 466554 4333 57899999999
Q ss_pred ceeeeeeecC
Q 040489 404 EATYINIVRI 413 (413)
Q Consensus 404 ~~~~~~~~~~ 413 (413)
..+.+++-|+
T Consensus 384 ~~~~~~~~~d 393 (482)
T 3k9v_A 384 TLNTQVLGSS 393 (482)
T ss_dssp EEECSGGGGC
T ss_pred EEccccccCC
Confidence 9999988763
No 3
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=100.00 E-value=3.1e-51 Score=409.87 Aligned_cols=357 Identities=17% Similarity=0.190 Sum_probs=266.7
Q ss_pred CCCCCCCCCcccccccchhhhhc-cCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCC
Q 040489 30 KTNLPPGPFNLPVIGNLQWLLKS-FSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLP 108 (413)
Q Consensus 30 ~~~~~PgP~~~pl~G~l~~~~~~-~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~ 108 (413)
+.+.||||+++|++||++++... ....+..+.+|+++||+||++++|+.++|+++||+++++++.+ +.|.+++....
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~ 120 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKL 120 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHH
T ss_pred ccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhh
Confidence 34789999999999999987532 1245678899999999999999999999999999999999953 45766653321
Q ss_pred CcccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHH
Q 040489 109 TSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMF 188 (413)
Q Consensus 109 ~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~ 188 (413)
.....+..+.++.+..+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|......+ .++|+.+.+..+++
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~---~~vdl~~~~~~~~~ 196 (503)
T 3s79_A 121 GLQCIGMHEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEVTNES---GYVDVLTLLRRVML 196 (503)
T ss_dssp HHHHHTCTTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTT---SCBCHHHHHHHHHH
T ss_pred hhhhhccCCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEcHHHHHHHHHH
Confidence 11222222234444567999999999876 789999999999999888888888776654333 57999999999999
Q ss_pred HHHHHHHhcCCCChHHH-HHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040489 189 CLLVLMCFGDKLDESQI-KKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEE 267 (413)
Q Consensus 189 ~vi~~~~fG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~ 267 (413)
|+++.++||.++++... ..+...+......... ..+++.+. + .+++..+..+.+.+++.++++++++....
T Consensus 197 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 268 (503)
T 3s79_A 197 DTSNTLFLRIPLDESAIVVKIQGYFDAWQALLIK---PDIFFKIS-W----LYKKYEKSVKDLKDAIEVLIAEKRRRIST 268 (503)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHTTC---CHHHHHSG-G----GTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcccCchhHHHHHHHHHHHHHHHhcC---cHHHhhcc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999865332 2222222222111110 11111111 1 12344455667778888888887665421
Q ss_pred hhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhc
Q 040489 268 ESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVG 347 (413)
Q Consensus 268 ~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g 347 (413)
.. ..+...|+++.+++.. ++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++||++++|
T Consensus 269 ~~----~~~~~~d~l~~ll~~~---~~~~l~~~~i~~~~~~~~~AG~~Tta~~l~~~l~~L~~~P~~~~kl~~Ei~~v~~ 341 (503)
T 3s79_A 269 EE----KLEECMDFATELILAE---KRGDLTRENVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEIQTVIG 341 (503)
T ss_dssp CT----TTTTTCCHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred cc----ccchHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 11 1112348999999754 2346999999999999999999999999999999999999999999999999999
Q ss_pred CCCC--CCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 348 ENEE--GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 348 ~~~~--~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++.. +++.+|||++|||+|+||+|||+|+..++++.+..+ .+++.++|+.|..+.+++-|
T Consensus 342 ~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~~r~~~~d~~~-----~g~~ip~Gt~v~~~~~~~~~ 403 (503)
T 3s79_A 342 ERDIKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALEDDVI-----DGYPVKKGTNIILNIGRMHR 403 (503)
T ss_dssp TSCCCHHHHTTCHHHHHHHHHHHHHSCSSCCEEEECSSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred CCCCCHHHHhcCHHHHHHHHhhhccCCCcccccccccCCeeE-----CCEEECCCCEEEeehHHhCC
Confidence 5433 888999999999999999999999987777766555 56899999999988887654
No 4
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-51 Score=411.71 Aligned_cols=360 Identities=21% Similarity=0.303 Sum_probs=255.5
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcc
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSK 111 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~ 111 (413)
+.||||+++|++||++++. .+++..+.+++++||+||++++|+.++|+++||+++++||.+++..|.+++......
T Consensus 9 ~~pPgP~~~P~iG~~~~~~---~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~- 84 (507)
T 3pm0_A 9 GKPPGPFAWPLIGNAAAVG---QAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFR- 84 (507)
T ss_dssp ----------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHH-
T ss_pred CCCcCCCCCCeeCchhhcC---ccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHH-
Confidence 6899999999999998874 467899999999999999999999999999999999999988888888776543221
Q ss_pred cccCCCcceEeccCChhHHHHHHHHhhhhcCHHH------HhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHH
Q 040489 112 IVSSNQHNISSASYGTTWRLFRRNLSAEILHPSR------VKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQY 185 (413)
Q Consensus 112 ~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~------l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~ 185 (413)
.+.. +.++.+..+|+.|+++||.+. +.|+... ++.+.+.+.++++.+++.|......+ .++|+.+.+..
T Consensus 85 ~~~~-g~~l~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~---~~vd~~~~~~~ 159 (507)
T 3pm0_A 85 VVSG-GRSMAFGHYSEHWKVQRRAAH-SMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADG---AFLDPRPLTVV 159 (507)
T ss_dssp HGGG-GTCSSSSCSSHHHHHHHHHHH-HHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGG---CCBCCHHHHHH
T ss_pred hhcC-CCceEECCCChHHHHHHHHHH-HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccC---CCcChHHHHHH
Confidence 2222 234544557999999999875 5444322 24488889999999999998754433 68999999999
Q ss_pred HHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHhcCCcccccccccchhhch--hHHHHHHHHHHHHHHHHHHHHHHH
Q 040489 186 AMFCLLVLMCFGDKLDES--QIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFV--KKWEQFLQMRRDQENVLVPLIRAR 261 (413)
Q Consensus 186 ~~~~vi~~~~fG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~--~~~~~~~~~~~~~~~~i~~~i~~r 261 (413)
+++|+|+.++||.+++.. ....+...............+..++|++..++.. +.+++..+..+.+.+++.++++++
T Consensus 160 ~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 239 (507)
T 3pm0_A 160 AVANVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRH 239 (507)
T ss_dssp HHHHHHHHHHTSCCCCTTCHHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998532 2222222222333333323344567766543211 134555666677778888888777
Q ss_pred HHhhhhhhhhhhhhhhhhhHHHHHHhccCCc-c------cCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHH
Q 040489 262 KKMKEEESLSIKEREYVLSYVDTLLDLQLPE-E------KRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHV 334 (413)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~-~------~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~v 334 (413)
++.... ++...|+++.+++..... + +..++++++.+++.++++||+|||+++++|++|+|++||++
T Consensus 240 ~~~~~~-------~~~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~ 312 (507)
T 3pm0_A 240 CESLRP-------GAAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDV 312 (507)
T ss_dssp HHHCCT-------TCCCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred Hhcccc-------ccCCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHH
Confidence 654311 011347899888643211 1 12599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhhh-hhhccccccccccccccccceeeeee
Q 040489 335 QETVYTEIRGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRA-IWYSEKEDKESFWNKSTVVEATYINI 410 (413)
Q Consensus 335 q~Kl~eEi~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
|+|+++||++++|++.. +++.+||||+|||+||||+|||+|+.++|++.+ ..+ .+.+.++|++|..+.+++
T Consensus 313 ~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~avi~E~lRl~p~~~~~~~r~~~~d~~~-----~g~~ip~Gt~v~~~~~~~ 387 (507)
T 3pm0_A 313 QTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSV-----LGYHIPKDTVVFVNQWSV 387 (507)
T ss_dssp HHHHHHHHHHHTCTTSCCCGGGGGGCHHHHHHHHHHHHHHCSSCBCSCEECSSCEEE-----TTEEECTTCEEEEBSHHH
T ss_pred HHHHHHHHHHhcCCCCCCChhhcccChHHHHHHHHHHhcCCCcccCCCccccCCceE-----cCEEECCCCEEEeChHHH
Confidence 99999999999986443 889999999999999999999999988887653 333 468899999999888877
Q ss_pred ec
Q 040489 411 VR 412 (413)
Q Consensus 411 ~~ 412 (413)
-|
T Consensus 388 ~~ 389 (507)
T 3pm0_A 388 NH 389 (507)
T ss_dssp HS
T ss_pred hC
Confidence 65
No 5
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=100.00 E-value=3.4e-50 Score=399.76 Aligned_cols=360 Identities=21% Similarity=0.280 Sum_probs=251.5
Q ss_pred CCCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCc
Q 040489 31 TNLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTS 110 (413)
Q Consensus 31 ~~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~ 110 (413)
.++||||+++|++||++++.. .+.+..+.+|++||||||++++|++++|+|+||+++++||.+++..|.+|+.....
T Consensus 9 ~kLPPGP~~lP~iGn~~~~~~--~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~- 85 (479)
T 3tbg_A 9 GKLPPGPLPLPGLGNLLHVDF--QNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT- 85 (479)
T ss_dssp CCCCCCSCCBTTTBTGGGCCT--TSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGG-
T ss_pred CCCCCCCCCcCcccchHhhcC--CCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHH-
Confidence 379999999999999998743 45788899999999999999999999999999999999999888889888754422
Q ss_pred ccccC--CCcceEeccCChhHHHHHHHHhhhhcCHHHHhH--HHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHH
Q 040489 111 KIVSS--NQHNISSASYGTTWRLFRRNLSAEILHPSRVKS--YKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYA 186 (413)
Q Consensus 111 ~~~~~--~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~ 186 (413)
..+.. .+.++.+..+|+.|+++|+.+. +.|++..+.. +........+.+...+.... + ..+|+.+.+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~---~~~~~~~~~~~~ 159 (479)
T 3tbg_A 86 QILGFGPRSQGVFLARYGPAWREQRRFSV-STLRNLGLGKKSLEQWVTEEAACLCAAFANHS--G---RPFRPNGLLDKA 159 (479)
T ss_dssp GGGTCBTTBCCSTTCCSSHHHHHHHHHHH-HHHHHTTSTTCHHHHHHHHHHHHHHHHHHTTT--T---CCBCTHHHHHHH
T ss_pred HHhccCCCCCceeeCCCCHHHHHHHHHHH-HHhcchhhhHHHHHHHHHHHHHHHHHHHHhcc--C---CcccHHHHHHHH
Confidence 22221 1233445567999999999876 5666555543 34444445555555554332 2 679999999999
Q ss_pred HHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHhcC--CcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040489 187 MFCLLVLMCFGDKLDES--QIKKIENVQRTQLLAFGN--FNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARK 262 (413)
Q Consensus 187 ~~~vi~~~~fG~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~ 262 (413)
++|+++.++||.+++.. .................. ......+|++..+ ....++.....+.....+.+.++++.
T Consensus 160 ~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479)
T 3tbg_A 160 VSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHI--PALAGKVLRFQKAFLTQLDELLTEHR 237 (479)
T ss_dssp HHHHHHHHHHSCCCCTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHSGGGGGS--HHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcccccchhhhhhhhhhhhhhhhhhhhhhhhhcccchhccc--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988532 222222222111111111 0011122222211 11112223333444555555555544
Q ss_pred HhhhhhhhhhhhhhhhhhHHHHHHhc---cCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHH
Q 040489 263 KMKEEESLSIKEREYVLSYVDTLLDL---QLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVY 339 (413)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~ld~ll~~---~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~ 339 (413)
...... ....++++.++.. ...+++..+|++++.+++.++++||+||||++++|++|+|++||++|+|||
T Consensus 238 ~~~~~~-------~~~~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~q~kl~ 310 (479)
T 3tbg_A 238 MTWDPA-------QPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQ 310 (479)
T ss_dssp HHCCTT-------SCCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred Hhhhcc-------cccchhhhhhhhhhhhcccCCccchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCHHHHHHHH
Confidence 332111 1112444444322 222345679999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 340 TEIRGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 340 eEi~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||+++++.+.. +++.+||||+|||+||||+|||+|+..||++.+ +..-.++..+++++|..+.+++-|
T Consensus 311 ~Ei~~~~~~~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~~~~~~----d~~~~g~~IP~Gt~V~~~~~~~h~ 382 (479)
T 3tbg_A 311 QEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSR----DIEVQGFRIPKGTTLITNLSSVLK 382 (479)
T ss_dssp HHHHHHTCSSSCCCHHHHTTCHHHHHHHHHHHHHHCSSTTCCCEECSS----CEEETTEEECTTCEEEEEHHHHHT
T ss_pred HHHHHHHhhccccchhhhccccccccceeeeccccccccccceeecCC----CceECCEEecCCCeeeechhhhcC
Confidence 999999986543 888999999999999999999999999998753 223367899999999998887765
No 6
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=100.00 E-value=4.1e-50 Score=399.77 Aligned_cols=360 Identities=20% Similarity=0.276 Sum_probs=268.8
Q ss_pred CCCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCc
Q 040489 31 TNLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTS 110 (413)
Q Consensus 31 ~~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~ 110 (413)
.++||||+++|++||++.+......++..+.+++++||+|+++++|+.++++++||+++++|+.+++..|.+++.....
T Consensus 11 ~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~- 89 (481)
T 3czh_A 11 MGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLF- 89 (481)
T ss_dssp -CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHH-
T ss_pred CCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHH-
Confidence 3689999999999999887543222788999999999999999999999999999999999998776678776532111
Q ss_pred ccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHH--hHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHH
Q 040489 111 KIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRV--KSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMF 188 (413)
Q Consensus 111 ~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~ 188 (413)
..+..+ .++.+..+|+.|+++||.+. +.|++..+ +.+.+.+.+.++.+++.|... .+ .++|+.+.+..+++
T Consensus 90 ~~~~~~-~~~~~~~~g~~w~~~R~~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~---~~~d~~~~~~~~~~ 162 (481)
T 3czh_A 90 MKMTKM-GGLLNSRYGRGWVDHRRLAV-NSFRYFGYGQKSFESKILEETKFFNDAIETY--KG---RPFDFKQLITNAVS 162 (481)
T ss_dssp HHHHTT-CSSTTCCSSHHHHHHHHHHH-HHHHHTTTTSTTHHHHHHHHHHHHHHHHHTT--TT---CCBCCHHHHHHHHH
T ss_pred HhhcCC-CCeEeCCCChHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHc--CC---CCcCHHHHHHHHHH
Confidence 122211 23333467999999999875 67776543 678899999999999988753 22 57999999999999
Q ss_pred HHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHhcCCc--ccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040489 189 CLLVLMCFGDKLD--ESQIKKIENVQRTQLLAFGNFN--ILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKM 264 (413)
Q Consensus 189 ~vi~~~~fG~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~ 264 (413)
|+|+.++||.+++ ++....+.......+....... +.+++|++.. +....+++..+..+.+.+++.++++++++.
T Consensus 163 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~-lp~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 241 (481)
T 3czh_A 163 NITNLIIFGERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGI-LPFGKHQQLFRNAAVVYDFLSRLIEKASVN 241 (481)
T ss_dssp HHHHHHHHSSCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGG-CSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHh-CCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999874 2223333333333332221111 2345666532 222234555666677788888888887653
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhccCC---cccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHH
Q 040489 265 KEEESLSIKEREYVLSYVDTLLDLQLP---EEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTE 341 (413)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ld~ll~~~~~---~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eE 341 (413)
.. . +.+.|+++.|++...+ +++..+|+++|++++.++++||+|||+++++|++|+|++||++|+|+++|
T Consensus 242 ~~--~------~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~E 313 (481)
T 3czh_A 242 RK--P------QLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKE 313 (481)
T ss_dssp CC--T------TCCSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cC--C------CchHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 21 1 1123899999865321 12346999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhhh-hhhccccccccccccccccceeeeeeec
Q 040489 342 IRGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRA-IWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 342 i~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+++++|++.. +++.+||||+|||+|+||+|||+|+.++|.+.+ +.+ .+.+.++++.|..+.+++-|
T Consensus 314 i~~~~~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 383 (481)
T 3czh_A 314 IDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVV-----RGYSIPKGTTVITNLYSVHF 383 (481)
T ss_dssp HHHHTCSSSCCCGGGGGGCHHHHHHHHHHHHHHCSSTTCSCEECSSCEEE-----TTEEECTTCEEEEEHHHHHT
T ss_pred HHHhcCCCCCCChhhhhhChHHHHHHHHHHhhccccccCcceeecCCeEE-----eCEEcCCCCEEEechHHHhC
Confidence 9999985432 889999999999999999999999888776653 333 46888999999988887755
No 7
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=100.00 E-value=2e-49 Score=394.01 Aligned_cols=356 Identities=20% Similarity=0.292 Sum_probs=263.8
Q ss_pred CCCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCc
Q 040489 31 TNLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTS 110 (413)
Q Consensus 31 ~~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~ 110 (413)
.++||||+++|++||++++. ..+++.++.+|+++||+||++++|+.++|+++||+++++||.+++..|.+++......
T Consensus 9 ~~lpPgP~~~PliG~~~~~~--~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~~ 86 (476)
T 3e6i_A 9 GKLPPGPFPLPIIGNLFQLE--LKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFH 86 (476)
T ss_dssp -CCCCCCCCBTTTBTGGGCC--TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGGG
T ss_pred CCCCcCCCCcccccChhhhc--cccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchhh
Confidence 37899999999999999873 3467899999999999999999999999999999999999998877887776433222
Q ss_pred ccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHH--hHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHH
Q 040489 111 KIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRV--KSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMF 188 (413)
Q Consensus 111 ~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~ 188 (413)
.+.+ + ++.+ .+|+.|+++||... +.++...+ +.+.+.+.+.++.+++.|... .+ .++|+.+.+..+++
T Consensus 87 ~~~~--~-~l~~-~~g~~w~~~Rr~~~-~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~---~~~d~~~~~~~~~~ 156 (476)
T 3e6i_A 87 AHRD--R-GIIF-NNGPTWKDIRRFSL-TTLRNYGMGKQGNESRIQREAHFLLEALRKT--QG---QPFDPTFLIGCAPC 156 (476)
T ss_dssp GGTT--S-SSTT-CCSTTHHHHHHHHH-HHHHHTC-CCSHHHHHHHHHHHHHHHHHHTT--TT---SCBCTHHHHTHHHH
T ss_pred eecC--C-CEEe-cCCcHHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHHHHh--CC---CCcChHHHHHHHHH
Confidence 3222 2 4433 57999999999654 44443322 346678888889999988753 22 57999999999999
Q ss_pred HHHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhcC--CcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040489 189 CLLVLMCFGDKLDE--SQIKKIENVQRTQLLAFGN--FNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKM 264 (413)
Q Consensus 189 ~vi~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~ 264 (413)
|+|+.++||.+++. +....+.......+..... ..+.+++|.+..++. ..+++..+..+.+.+++.++++++++.
T Consensus 157 dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~lp-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 235 (476)
T 3e6i_A 157 NVIADILFRKHFDYNDEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYLP-GSHRKVIKNVAEVKEYVSERVKEHHQS 235 (476)
T ss_dssp HHHHHHHHSCCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTSC-SHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999998853 2222232222222222211 112233452222222 234455566677778888888877654
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhccCCc---ccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHH
Q 040489 265 KEEESLSIKEREYVLSYVDTLLDLQLPE---EKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTE 341 (413)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ld~ll~~~~~~---~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eE 341 (413)
... +.+.|+++.++.....+ ++..++++++.+++.++++||+|||+++++|++|+|++||++|+|+++|
T Consensus 236 ~~~--------~~~~d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E 307 (476)
T 3e6i_A 236 LDP--------NCPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEE 307 (476)
T ss_dssp CCT--------TSCCSHHHHHHHHHHSSSSCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCC--------CCCccHHHHHHHHHHhcccCCCCCcCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 311 11337888888643211 2346999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhhh-hhhccccccccccccccccceeeeeeec
Q 040489 342 IRGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRA-IWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 342 i~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|++++|++.. +++.+||||+|||+|+||+|||+|+.++|.+.+ +.+ .+.+.++|++|..+.+++-|
T Consensus 308 i~~~~~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~~~~r~~~~d~~~-----~g~~ip~Gt~v~~~~~~~~~ 377 (476)
T 3e6i_A 308 IDRVIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIF-----RGYLIPKGTVVVPTLDSVLY 377 (476)
T ss_dssp HHHHTTTTSCCCGGGGGGCHHHHHHHHHHHHHHCSSTTCSCEECSSCEEE-----TTEEECTTCEEEECSHHHHT
T ss_pred HHHhcCCCCCCChhhccCCchHHHHHHHHHHhccCCCccccccCCCCeeE-----cCEEeCCCCEEEechHHhhC
Confidence 9999985433 889999999999999999999999888886653 333 57888999999888887765
No 8
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.1e-50 Score=399.50 Aligned_cols=357 Identities=18% Similarity=0.307 Sum_probs=266.2
Q ss_pred CCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCccc
Q 040489 33 LPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKI 112 (413)
Q Consensus 33 ~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~ 112 (413)
.+|||+++|++||++.+. .+++..+.+++++|||||++++|+.++++++||+++++|+.+++..|.+++..... ..
T Consensus 17 ~~PgP~~~p~~G~~~~~~---~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~-~~ 92 (495)
T 2hi4_A 17 SPPEPWGWPLLGHVLTLG---KNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTS-TL 92 (495)
T ss_dssp CCCCCCCBTTTBTHHHHT---TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHH-HT
T ss_pred CCCCCCCCcceeeHHhcC---ccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHH-HH
Confidence 349999999999998874 35788999999999999999999999999999999999998776678776543211 11
Q ss_pred ccCCCcceEec-cCChhHHHHHHHHhhhhcC---HHHH---h---HHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHH
Q 040489 113 VSSNQHNISSA-SYGTTWRLFRRNLSAEILH---PSRV---K---SYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDH 182 (413)
Q Consensus 113 ~~~~~~~i~~~-~~g~~w~~~Rk~~~~~~~s---~~~l---~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~ 182 (413)
+. ++.++.+. .+|+.|+++||.+. +.|+ ..++ + .+.+.+.+.++.+++.|......+ .++|+.+.
T Consensus 93 ~~-~~~~l~~~~~~g~~w~~~Rr~~~-~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~---~~~d~~~~ 167 (495)
T 2hi4_A 93 IT-DGQSLTFSTDSGPVWAARRRLAQ-NALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGP---GHFDPYNQ 167 (495)
T ss_dssp ST-TSCCTTTSSCCSHHHHHHHHHHH-HHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTT---SCBCHHHH
T ss_pred hc-CCCCEEEcCCCChHHHHHHHHHH-HHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCC---CccchHHH
Confidence 22 12344343 36999999999876 5543 2222 2 688999999999999997644333 57999999
Q ss_pred HHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 040489 183 FQYAMFCLLVLMCFGDKLDE--SQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRA 260 (413)
Q Consensus 183 ~~~~~~~vi~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 260 (413)
+..+++|+|++++||.+++. .....+.................+++|++..+ ....+++..+..+.+.+++.+++++
T Consensus 168 ~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l-p~~~~~~~~~~~~~~~~~~~~~i~~ 246 (495)
T 2hi4_A 168 VVVSVANVIGAMCFGQHFPESSDEMLSLVKNTHEFVETASSGNPLDFFPILRYL-PNPALQRFKAFNQRFLWFLQKTVQE 246 (495)
T ss_dssp HHHHHHHHHHHHHHGGGSCTTCHHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGS-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998742 22222222222232222222234567766432 3234455666667788888888888
Q ss_pred HHHhhhhhhhhhhhhhhhhhHHHHHHhccC--C-cccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHH
Q 040489 261 RKKMKEEESLSIKEREYVLSYVDTLLDLQL--P-EEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQET 337 (413)
Q Consensus 261 r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~--~-~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~K 337 (413)
+++... . +...|+++.|++... + +++..+|+++|.+++.++++||+|||+++++|++|+|++||++|+|
T Consensus 247 r~~~~~--~------~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~k 318 (495)
T 2hi4_A 247 HYQDFD--K------NSVRDITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRK 318 (495)
T ss_dssp HHHTCC--T------TCCCSHHHHHHHHHHHCCEETTEECCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHhhc--c------cccccHHHHHHHHhhhccCccccCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCHHHHHH
Confidence 765421 1 112389999985321 1 1234589999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhhh-hhhccccccccccccccccceeeeeeec
Q 040489 338 VYTEIRGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRA-IWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 338 l~eEi~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+++||++++|++.. +++.+||||+|||+|+||+|||+|+.++|.+.+ +.+ .+.+.++++.|..+.+++-|
T Consensus 319 l~~Ei~~v~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 392 (495)
T 2hi4_A 319 IQKELDTVIGRERRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTL-----NGFYIPKKCCVFVNQWQVNH 392 (495)
T ss_dssp HHHHHHHHTTTSSCCCGGGSTTCHHHHHHHHHHHHHHCSSCBCSCEECSSCEEE-----TTEEECTTCEEEEBHHHHHH
T ss_pred HHHHHHHhcCCCCCCChHHhccCHHHHHHHHHHHHccCCccCCCccccCCCeeE-----eCeEECCCCEEEeChHHhhC
Confidence 99999999986432 889999999999999999999999888876653 333 46888999999888887655
No 9
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=100.00 E-value=5.9e-50 Score=399.95 Aligned_cols=353 Identities=19% Similarity=0.262 Sum_probs=264.4
Q ss_pred CCCCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCC
Q 040489 30 KTNLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPT 109 (413)
Q Consensus 30 ~~~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~ 109 (413)
..++||||++ ++++. .++++..+.+|+++||||+++++|+.++|+++||+++++|+.+++..|.+++.....
T Consensus 27 ~~~lPPGP~~------l~~~~--~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~ 98 (496)
T 3qz1_A 27 NLHLPPLVPG------FLHLL--QPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSY 98 (496)
T ss_dssp --CCCCBCSC------SCTTS--SSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTTT
T ss_pred CCCCCcCCcc------ccccC--CCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcchH
Confidence 3478999987 33332 356889999999999999999999999999999999999998887788887654322
Q ss_pred cccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHH
Q 040489 110 SKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFC 189 (413)
Q Consensus 110 ~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~ 189 (413)
.. ...+..++.+..+|+.|+++||.+. +.|++..++.+.+.++++++.+++.|... .| .++|+.+.+..+++|
T Consensus 99 ~~-~~~~~~~l~~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l~~~--~~---~~vd~~~~~~~~~~d 171 (496)
T 3qz1_A 99 KL-VSQRCQDISLGDYSLLWKAHKKLTR-SALLLGTRSSMEPWVDQLTQEFCERMRVQ--AG---APVTIQKEFSLLTCS 171 (496)
T ss_dssp TT-SCTTCCCSSSSCCSHHHHHHHHHHH-HHHHC--CCCHHHHHHHHHHHHHHHHHTT--CS---CCCHHHHHHTHHHHH
T ss_pred HH-hcCCCCceEECCCCHHHHHHHHHHH-HHHhhccHhhHHHHHHHHHHHHHHHHHhc--CC---CccCHHHHHHHHHHH
Confidence 22 2222225555444999999999876 66777778889999999999999999762 23 689999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhcC--CcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040489 190 LLVLMCFGDKLDESQIKKIENVQRTQLLAFGN--FNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEE 267 (413)
Q Consensus 190 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~ 267 (413)
+|+.++||. .++.....+............. ..+.+++|++..+ ..+.+++..+..+.+.+++.++++++++....
T Consensus 172 vi~~~~fG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l-p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 249 (496)
T 3qz1_A 172 IICYLTFGN-KEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFF-PNPGLWRLKQAIENRDHMVEKQLRRHKESMVA 249 (496)
T ss_dssp HTTTTSTTC-CCHHHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHhcCC-CCChHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999998 3343333333332222211111 1223456655443 22345566667777888888888877654311
Q ss_pred hhhhhhhhhhhhhHHHHHHhccCCc---cc-CCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHH
Q 040489 268 ESLSIKEREYVLSYVDTLLDLQLPE---EK-RKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIR 343 (413)
Q Consensus 268 ~~~~~~~~~~~~~~ld~ll~~~~~~---~~-~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~ 343 (413)
+...|+++.|++...++ ++ ..++++++.+++.++++||+|||+++++|++|+|++||++|+|+++|++
T Consensus 250 --------~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~ 321 (496)
T 3qz1_A 250 --------GQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELD 321 (496)
T ss_dssp --------SCCSSSHHHHTTSSTTCCC-----CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred --------CCccchHHHHHHHHHhccccCCcccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 11238999999865421 11 2699999999999999999999999999999999999999999999999
Q ss_pred hhhcCC----CC--CCCCCChhHHHhhhccccccCCCCCCCcchhhh-hhhccccccccccccccccceeeeeeec
Q 040489 344 GVVGEN----EE--GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRA-IWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 344 ~v~g~~----~~--~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+++|++ .. +++.+||||+|||+|+||+|||+|..+||.+.+ ..+ .+.+.++|++|..+.+++-|
T Consensus 322 ~~~~~~~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~~~~R~~~~d~~~-----~g~~ip~Gt~v~~~~~~~~~ 392 (496)
T 3qz1_A 322 RELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLALPHRTTRPSSI-----FGYDIPEGMVVIPNLQGAHL 392 (496)
T ss_dssp HHHCSSSSSSCCSTTGGGSCHHHHHHHHHHHHHSCSSSSCCCEECSSCEEC-----SSSEECTTCEEEECHHHHTT
T ss_pred HHhCCCcccCCCChhhhhcCcHHHHHHHHHHHhcCCcccccCccCCCCceE-----CCEEeCCCCEEEechHHhhC
Confidence 999862 21 788999999999999999999999988887643 333 47889999999988887765
No 10
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=100.00 E-value=4.8e-49 Score=391.65 Aligned_cols=356 Identities=21% Similarity=0.302 Sum_probs=257.1
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcc
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSK 111 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~ 111 (413)
+.||||+++|++||++++. ..+++..+.+++++||+|+++++|+.++|+++||+++++|+.+++..|.+++.......
T Consensus 11 ~~pPgP~~~p~iG~~~~~~--~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~ 88 (477)
T 1r9o_A 11 KLPPGPTPLPVIGNILQIG--IKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAER 88 (477)
T ss_dssp BCCCCSSSCC-----CCBC--HHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCT
T ss_pred CCCCCCCCCceeccHhhcC--CCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhh
Confidence 5799999999999998872 23468889999999999999999999999999999999999776667877653221222
Q ss_pred cccCCCcceEeccCChhHHHHHHHHhhhhcCHH--HHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHH
Q 040489 112 IVSSNQHNISSASYGTTWRLFRRNLSAEILHPS--RVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFC 189 (413)
Q Consensus 112 ~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~ 189 (413)
.. . +.++.+ .+|+.|+++||.+. +.|++. .++.+.+.+.+.++.+++.|.... + .++|+.+.+..+++|
T Consensus 89 ~~-~-~~~l~~-~~g~~w~~~Rr~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~--~---~~vd~~~~~~~~~~~ 159 (477)
T 1r9o_A 89 AN-R-GFGIVF-SNGKKWKEIRRFSL-MTLRNFGMGKRSIEDRVQEEARCLVEELRKTK--A---SPCDPTFILGCAPCN 159 (477)
T ss_dssp TT-C-TTSSTT-CCHHHHHHHHHHHH-HHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTT--T---SCBCTHHHHHHHHHH
T ss_pred cc-C-CCceEe-cCChHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHHhcC--C---CccChHHHHHHHHHH
Confidence 21 1 234433 47999999999765 667776 456789999999999999987532 2 579999999999999
Q ss_pred HHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhcC--CcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040489 190 LLVLMCFGDKLDE--SQIKKIENVQRTQLLAFGN--FNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMK 265 (413)
Q Consensus 190 vi~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~ 265 (413)
+|++++||.+++. .....+.......+..... ..+..++|++.+++.. ..++..+..+.+.+++.++++++++..
T Consensus 160 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~lp~-~~~~~~~~~~~~~~~~~~~i~~r~~~~ 238 (477)
T 1r9o_A 160 VICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPG-THNKLLKNVAFMKSYILEKVKEHQESM 238 (477)
T ss_dssp HHHHHHHSCCCCTTCHHHHHHHHHHHHHHHHHTCCBC-------CCCSCCTT-CHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHccCcCCCCCHHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999988742 2223332222222222111 1123456653332222 234455566677788888888876532
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhccCC---cccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHH
Q 040489 266 EEESLSIKEREYVLSYVDTLLDLQLP---EEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEI 342 (413)
Q Consensus 266 ~~~~~~~~~~~~~~~~ld~ll~~~~~---~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi 342 (413)
. . +.+.|+++.|++.... +.+..+|+++|.+++.++++||+|||+++++|++|+|++||++|+|+++||
T Consensus 239 ~--~------~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei 310 (477)
T 1r9o_A 239 D--M------NNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEI 310 (477)
T ss_dssp C--T------TCCCSHHHHHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--C------CCchHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1 1 1123789988853211 123469999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhhh-hhhccccccccccccccccceeeeeeec
Q 040489 343 RGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRA-IWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 343 ~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++++|++.. +++.+||||+|||+|+||+|||+|+.++|.+.+ +.+ .+.+.+++++|..+.+++-|
T Consensus 311 ~~~~~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~~~~R~~~~d~~~-----~g~~Ip~Gt~V~~~~~~~~r 379 (477)
T 1r9o_A 311 ERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKF-----RNYLIPKGTTILISLTSVLH 379 (477)
T ss_dssp HHHTCSSSCCCGGGGGGCHHHHHHHHHHHHHHTSSTTCSCEECSSCEEE-----TTEEECTTCEEEECSHHHHT
T ss_pred HHhcCCCCCCChHhhccCcHHHHHHHHHHHhcCCCCCCCceeccCCccc-----cceecCCCCEEEEecHHhhC
Confidence 999986432 889999999999999999999999877876653 333 46889999999988887755
No 11
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=100.00 E-value=2.7e-49 Score=393.34 Aligned_cols=356 Identities=19% Similarity=0.289 Sum_probs=262.9
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcc
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSK 111 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~ 111 (413)
+.||||+++|++||++++. .++++..+.+++++||+|+++++|+.++|+++||+++++|+.+++..|.+++.......
T Consensus 10 ~~pPgP~~~p~iG~~~~~~--~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~ 87 (476)
T 1po5_A 10 KLPPGPSPLPVLGNLLQMD--RKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDP 87 (476)
T ss_dssp CCCCCSCCBTTTBTGGGCC--TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCS
T ss_pred CCCcCCCCCCccccHHhcc--CCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHh
Confidence 6899999999999998872 35678899999999999999999999999999999999999776667876653221111
Q ss_pred cccCCCcceEeccCChhHHHHHHHHhhhhcCHH--HHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHH
Q 040489 112 IVSSNQHNISSASYGTTWRLFRRNLSAEILHPS--RVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFC 189 (413)
Q Consensus 112 ~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~ 189 (413)
.. . +.++.+ .+|+.|+++||.+. +.|++. .++.+.+.+.+.++.+++.|.... + .++|+.+.+..+++|
T Consensus 88 ~~-~-~~~l~~-~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~--~---~~~d~~~~~~~~~~~ 158 (476)
T 1po5_A 88 IF-Q-GYGVIF-ANGERWRALRRFSL-ATMRDFGMGKRSVEERIQEEARCLVEELRKSK--G---ALLDNTLLFHSITSN 158 (476)
T ss_dssp CC-S-SCCCCC-SSHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTT--T---CCBCCHHHHHHHHHH
T ss_pred hc-C-CCceEe-cCCcHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHhcC--C---CccCHHHHHHHHHHH
Confidence 11 1 234544 47999999999765 667766 457789999999999999987642 2 579999999999999
Q ss_pred HHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhcCC--cccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040489 190 LLVLMCFGDKLDE--SQIKKIENVQRTQLLAFGNF--NILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMK 265 (413)
Q Consensus 190 vi~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~ 265 (413)
+|++++||.+++. .....+.............. .....+|++.+++.. .+++..+..+.+.+++.++++++++..
T Consensus 159 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~lp~-~~~~~~~~~~~~~~~~~~~i~~r~~~~ 237 (476)
T 1po5_A 159 IICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFPG-THRQIYRNLQEINTFIGQSVEKHRATL 237 (476)
T ss_dssp HHHHHHHSSCCCTTCHHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTSSC-SHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998752 22222222222211111100 112245542222221 234455566677788888888776432
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhccCC---cccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHH
Q 040489 266 EEESLSIKEREYVLSYVDTLLDLQLP---EEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEI 342 (413)
Q Consensus 266 ~~~~~~~~~~~~~~~~ld~ll~~~~~---~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi 342 (413)
. . +.+.|+++.|+..... +.+..+|+++|++++.++++||+|||+++++|++|+|++||++|+|+++||
T Consensus 238 ~--~------~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~Ei 309 (476)
T 1po5_A 238 D--P------SNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEI 309 (476)
T ss_dssp C--T------TSCCSHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--C------CCcccHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1 1 1123799988854211 112358999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 343 RGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 343 ~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++++|.+.. +++.+||||+|||+||||+|||+|+.++|.+. ++.+ .+.+.++|+.|..+.+++-|
T Consensus 310 ~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~~~~R~~~~d~~~-----~g~~Ip~Gt~v~~~~~~~~r 378 (476)
T 1po5_A 310 EQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQF-----RGYVIPKNTEVFPVLSSALH 378 (476)
T ss_dssp HHHTCSSSCCCGGGGGGCHHHHHHHHHHHHHHCSSTTCCCEECSSCEEE-----TTEEECTTCEEEECHHHHHT
T ss_pred HHHhCCCCCCChHHHhcCcHHHHHHHHHHHhccCCCCCCccccCCCcee-----cCEecCCCCEEEeehHhHhc
Confidence 999986432 88999999999999999999999987777665 3443 46888999999888877655
No 12
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=100.00 E-value=7e-49 Score=390.40 Aligned_cols=356 Identities=20% Similarity=0.290 Sum_probs=265.6
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcc
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSK 111 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~ 111 (413)
++||||+++|++||++++. ..+++.++.+++++||+|+++++|+.++++++||+++++|+.+++..|.+++..... .
T Consensus 10 ~~pPgP~~~p~iG~~~~~~--~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~-~ 86 (476)
T 2fdv_A 10 KLPPGPTPLPFIGNYLQLN--TEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATF-D 86 (476)
T ss_dssp BCCCCCCCBTTTBTGGGCC--TTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHH-H
T ss_pred CCCCCCCCCcccccHhhcC--CcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHH-h
Confidence 5799999999999998873 245788999999999999999999999999999999999997766677765432111 1
Q ss_pred cccCCCcceEeccCChhHHHHHHHHhhhhcCHHHH--hHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHH
Q 040489 112 IVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRV--KSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFC 189 (413)
Q Consensus 112 ~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~ 189 (413)
.+.. +.++.+ .+|+.|+++||.+. +.|++..+ +.+.+.+.+.++.+++.|... .+ .++|+.+.+..+++|
T Consensus 87 ~~~~-~~~l~~-~~g~~~~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~---~~vd~~~~~~~~~~~ 158 (476)
T 2fdv_A 87 WVFK-GYGVVF-SNGERAKQLRRFSI-ATLRDFGVGKRGIEERIQEEAGFLIDALRGT--GG---ANIDPTFFLSRTVSN 158 (476)
T ss_dssp HHHT-TCSSSS-CCHHHHHHHHHHHH-HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHT--TT---CCBCCHHHHHHHHHH
T ss_pred hhcC-CCCeEe-cCchHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHhc--CC---CccChHHHHHHHHHH
Confidence 1111 234544 47999999999865 67877666 789999999999999998753 22 579999999999999
Q ss_pred HHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhcCC--cccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040489 190 LLVLMCFGDKLDE--SQIKKIENVQRTQLLAFGNF--NILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMK 265 (413)
Q Consensus 190 vi~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~ 265 (413)
+|++++||.+++. .....+.......+...... .+.+.+|++.+++. ..+++..+..+.+.+++.++++++++..
T Consensus 159 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~ 237 (476)
T 2fdv_A 159 VISSIVFGDRFDYKDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLP-GPQQQAFQLLQGLEDFIAKKVEHNQRTL 237 (476)
T ss_dssp HHHHHHHSSCCCTTCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTSC-SHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCcCCCCCHHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998752 22233333222222211110 01234554222222 2234555566777888888888776432
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhccCC---cccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHH
Q 040489 266 EEESLSIKEREYVLSYVDTLLDLQLP---EEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEI 342 (413)
Q Consensus 266 ~~~~~~~~~~~~~~~~ld~ll~~~~~---~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi 342 (413)
. . +.+.|+++.+++...+ +++..+|+++|.+++.++++||+|||+++++|++|+|++||++|+|+++||
T Consensus 238 ~--~------~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~Ei 309 (476)
T 2fdv_A 238 D--P------NSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEI 309 (476)
T ss_dssp C--T------TSCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--C------CCCccHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1 1 1123899999875311 123469999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 343 RGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 343 ~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++++|++.. +++.+||||+|||+|+||+|||+|+.++|.+. ++.+ .+.+.++++.|..+.+++-|
T Consensus 310 ~~~~~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~~~~R~~~~d~~~-----~g~~Ip~Gt~V~~~~~~~~r 378 (476)
T 2fdv_A 310 DRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKF-----RDFFLPKGTEVYPMLGSVLR 378 (476)
T ss_dssp HHHTCSSSCCCGGGGGGCHHHHHHHHHHHHHHCSSTTCSCEECSSCEEE-----TTEEECTTCEEEECHHHHHT
T ss_pred HHhhcCCCCCChhhhhcChHHHHHHHHHHHhcCCcccCcceeccCCeeE-----CCEeeCCCCEEEeehHHhhC
Confidence 999986432 88999999999999999999999987777665 3333 46888899999888877655
No 13
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=100.00 E-value=1.1e-49 Score=396.90 Aligned_cols=354 Identities=21% Similarity=0.274 Sum_probs=252.0
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhc-CcccccCCCCCCCc
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQN-GAIFADRPRPLPTS 110 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~-~~~f~~r~~~~~~~ 110 (413)
+.||||+++|++||++++.+ +++.++.+|+++||+||++++|+.++|+++||+++++||.++ +..|.+++.... .
T Consensus 14 ~~~PGP~~~PliGn~~~~~~---~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~-~ 89 (485)
T 3nxu_A 14 LGIPGPTPLPFLGNILSYHK---GFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGP-V 89 (485)
T ss_dssp HTCCCCCCBTTTBTGGGGGG---CHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSC-C
T ss_pred CCCCCCCCcCeecCcHHhhc---ChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccc-c
Confidence 57999999999999998853 578889999999999999999999999999999999999876 566776654321 1
Q ss_pred ccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHH
Q 040489 111 KIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCL 190 (413)
Q Consensus 111 ~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~v 190 (413)
..++ .++ +..+|+.|+++||.+. +.|+++.++.+.+.+++.++.+++.|......| .++|+.+.+..+++|+
T Consensus 90 ~~~~---~~l-~~~~g~~w~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g---~~~d~~~~~~~~~~dv 161 (485)
T 3nxu_A 90 GFMK---SAI-SIAEDEEWKRLRSLLS-PTFTSGKLKEMVPIIAQYGDVLVRNLRREAETG---KPVTLKDVFGAYSMDV 161 (485)
T ss_dssp GGGG---GST-TTCCHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CCEEHHHHHHHHHHHH
T ss_pred cccc---cCc-cccCCcHHHHHHhhcC-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CcCcHHHHHHHHHHHH
Confidence 2222 234 3357999999999875 889999999999999999999999997654444 6899999999999999
Q ss_pred HHHHHhcCCCChHH--HHHHHHHHHHHHHHhcC---Ccccccccccchhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040489 191 LVLMCFGDKLDESQ--IKKIENVQRTQLLAFGN---FNILNFWPRLSKIVFV-KKWEQFLQMRRDQENVLVPLIRARKKM 264 (413)
Q Consensus 191 i~~~~fG~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~p~l~~~~~~-~~~~~~~~~~~~~~~~i~~~i~~r~~~ 264 (413)
|+.++||.+++... ...+............. ......+|++.++... ..........+.+...+.++++++.+.
T Consensus 162 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (485)
T 3nxu_A 162 ITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLED 241 (485)
T ss_dssp HHHHHHSCCCCGGGCTTCHHHHHHTTSCCCCTTSHHHHHHHHCTTHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCccccccCCCcHHHHHHHHHhchhhHHHHHHHHHHhhhhHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999885321 01111111000000000 0011223332211000 000000011122233333333333211
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhccCCc---ccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHH
Q 040489 265 KEEESLSIKEREYVLSYVDTLLDLQLPE---EKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTE 341 (413)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ld~ll~~~~~~---~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eE 341 (413)
. .+...|+++.+++....+ ++..++++++++++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 242 ~---------~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~kl~~E 312 (485)
T 3nxu_A 242 T---------QKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEE 312 (485)
T ss_dssp C------------CCCHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c---------CCCcccHHHHHHHhhhccccccccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 0 122348999998764321 2356999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 342 IRGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 342 i~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++++++++.. +++.+||||+|||+|+||+|||+|. ++|.+. ++.+ .+.+.+++++|..+.+++-|
T Consensus 313 i~~~~~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~-~~R~~~~d~~i-----~g~~Ip~Gt~V~~~~~~~~~ 381 (485)
T 3nxu_A 313 IDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMR-LERVCKKDVEI-----NGMFIPKGVVVMIPSYALHR 381 (485)
T ss_dssp HHHHSTTTCCCCHHHHHHCHHHHHHHHHHHHHSCSCSC-EEEECCSCEEE-----TTEEECTTCEEEECHHHHHT
T ss_pred HHHHhccCCCCCHHHHhcChHHHHHHHHHHhcCCCccC-cceeeCCCeeE-----CCEEECCCCEEEEchHHhcC
Confidence 9999986443 7888999999999999999999997 666554 4433 57889999999888887765
No 14
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=100.00 E-value=6.1e-48 Score=384.47 Aligned_cols=361 Identities=16% Similarity=0.158 Sum_probs=263.5
Q ss_pred CCCCCCCcccccccchhhhhc--cCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCC
Q 040489 32 NLPPGPFNLPVIGNLQWLLKS--FSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPT 109 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~--~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~ 109 (413)
+.+|||+++|+. |++.+... .+.++.++.+|++|||||+++++|+.++|+++||+++++|+.+++ .|.+|+.....
T Consensus 9 ~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~~~~~~ 86 (487)
T 3n9y_A 9 NEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERFLIPPW 86 (487)
T ss_dssp GGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCCCCHHH
T ss_pred hhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCCCCcHH
Confidence 458999988864 87776542 236788999999999999999999999999999999999997654 67766542211
Q ss_pred --cccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccchHHHHHHH
Q 040489 110 --SKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESK-NGDRPVPVRVLDHFQYA 186 (413)
Q Consensus 110 --~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~vd~~~~~~~~ 186 (413)
.......+.++ +..+|+.|+++||.+.+.+|+++.++.+.+.++++++.+++.|..... .++++.++|+.+.+..+
T Consensus 87 ~~~~~~~~~~~~l-~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~ 165 (487)
T 3n9y_A 87 VAYHQYYQRPIGV-LLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRF 165 (487)
T ss_dssp HHHHHHTTCCCCG-GGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHHHHHH
T ss_pred HHHHHHccccCCC-ccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHHHHHH
Confidence 01111122344 346899999999988744799999999999999999999999976431 11112579999999999
Q ss_pred HHHHHHHHHhcCCCCh------HHHHHHHHHHHHHHHHhcCCcccccccc-cchhhchhHHHHHHHHHHHHHHHHHHHHH
Q 040489 187 MFCLLVLMCFGDKLDE------SQIKKIENVQRTQLLAFGNFNILNFWPR-LSKIVFVKKWEQFLQMRRDQENVLVPLIR 259 (413)
Q Consensus 187 ~~~vi~~~~fG~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~-l~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 259 (413)
++|+|+.++||.+++. .....+.......+.... ....+|. +.+++..+.+++..+..+.+.+++.++++
T Consensus 166 t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 242 (487)
T 3n9y_A 166 AFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSV---PMLNLPPDLFRLFRTKTWKDHVAAWDVIFSKADIYTQ 242 (487)
T ss_dssp HHHHHHHHHHSSCCCTTSSSCCHHHHHHHHHHHHHHHHHG---GGTTSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCCChHHHHHHHHHHHHHHHHH---HHHhcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998741 222333333333332221 1223332 33333334455544445555666666776
Q ss_pred HHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHH
Q 040489 260 ARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVY 339 (413)
Q Consensus 260 ~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~ 339 (413)
++.+...... ...+...|+++.+++. ..+++++|.+++.++++||+|||+++|+|++|+|++||++|+|++
T Consensus 243 ~~~~~~~~~~---~~~~~~~d~l~~ll~~------~~l~~~ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~kl~ 313 (487)
T 3n9y_A 243 NFYWELRQKG---SVHHDYRGILYRLLGD------SKMSFEDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLR 313 (487)
T ss_dssp HHHHHHHHHC---CCCSSCCCHHHHHHHS------CSSCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHhcC---CcccchHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhChHHHHHHH
Confidence 6544331111 0011234899999862 248999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCC---CCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeecC
Q 040489 340 TEIRGVVGENEE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVRI 413 (413)
Q Consensus 340 eEi~~v~g~~~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
+||++++|+... +++.+||||+|||+|+||+|||+|. ++|.+. ++.+ .+.+.++|++|..+.+++-|+
T Consensus 314 ~Ei~~~~~~~~~~~~~~l~~lpyl~avi~E~lRl~p~~~~-~~R~~~~d~~~-----~g~~ip~Gt~v~~~~~~~~~d 385 (487)
T 3n9y_A 314 AEVLAARHQAQGDMATMLQLVPLLKASIKETLRLHPISVT-LQRYLVNDLVL-----RDYMIPAKTLVQVAIYALGRE 385 (487)
T ss_dssp HHHHHHHHHTTTCHHHHTTSCHHHHHHHHHHHHHSCSSSE-EEEECSSCEEE-----TTEEECTTCEEEEEHHHHHTC
T ss_pred HHHHHhhcccccchhhhhhhCHHHHHHHHHHhhhCCcccc-cceeecCceee-----CCEEECCCCEEEeCcHHhcCC
Confidence 999999986443 8899999999999999999999986 566554 4444 578999999999998887663
No 15
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=100.00 E-value=2.3e-48 Score=386.09 Aligned_cols=353 Identities=16% Similarity=0.114 Sum_probs=256.4
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcc
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSK 111 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~ 111 (413)
+.+|||+++|++||++++. .+..+..+.+++++||||+++++|+.+.++++||+++++|+.+ ..|. +........
T Consensus 3 ~~~PGP~~~p~iG~l~~~~--~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f~-~~~~~~~~~ 77 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLN--TDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRFD-KNLSQALKF 77 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGC--SSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTEE-ECCCHHHHH
T ss_pred CCCCCCCCCCccccHHHHh--cccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCcC-cCchhHHHH
Confidence 4589999999999998874 2457888999999999999999999999999999999999953 2353 221110111
Q ss_pred cccCCCcceEec-cCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHH
Q 040489 112 IVSSNQHNISSA-SYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCL 190 (413)
Q Consensus 112 ~~~~~~~~i~~~-~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~v 190 (413)
+....+.++.+. .+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|.... .+ .++|+.+.+..+++|+
T Consensus 78 ~~~~~~~~l~~~~~~g~~w~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~---~~vd~~~~~~~~~~~v 152 (470)
T 2ij2_A 78 VRDFAGDGLFTSWTHEKNWKKAHNILL-PSFSQQAMKGYHAMMVDIAVQLVQKWERLN-AD---EHIEVPEDMTRLTLDT 152 (470)
T ss_dssp HHHHHTTSGGGSCTTSHHHHHHHHHHG-GGGSTTTHHHHHHHHHHHHHHHHHHHHTCC-TT---CCEEHHHHHHHHHHHH
T ss_pred HHHhcCCceEEcCCCchHHHHHHHHhc-cccCHHHHHHHHHHHHHHHHHHHHHHHhhC-CC---CeEEHHHHHHHHHHHH
Confidence 100011234333 47999999999875 789999999999999999999999887532 22 5799999999999999
Q ss_pred HHHHHhcCCCChH---HHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040489 191 LVLMCFGDKLDES---QIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEE 267 (413)
Q Consensus 191 i~~~~fG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~ 267 (413)
|+.++||.+++.. ....+.......+....... ...|++.. +.....++..+..+.+.+++.++++++++..
T Consensus 153 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~-- 227 (470)
T 2ij2_A 153 IGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKL--QRANPDDP-AYDENKRQFQEDIKVMNDLVDKIIADRKASG-- 227 (470)
T ss_dssp HHHHHHSCCCCGGGCSSCCHHHHHHHHHHHHHHHTC-----CTTSG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCcccccccCCCCHHHHHHHHHHHHHHHHH--hhhhhHhh-ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 9999999987531 11122222211111111000 00122211 1222334445556667778888888765421
Q ss_pred hhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhc
Q 040489 268 ESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVG 347 (413)
Q Consensus 268 ~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g 347 (413)
....|+++.|++...++++..+|+++|.+++.++++||+|||+++++|++|+|++||++|+|+++|+++++|
T Consensus 228 --------~~~~dll~~ll~~~~~~~~~~ls~~ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~ 299 (470)
T 2ij2_A 228 --------EQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLV 299 (470)
T ss_dssp --------CCCSSHHHHHHHCCCTTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC
T ss_pred --------cCchhHHHHHHhccCcccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcC
Confidence 112389999998654323456999999999999999999999999999999999999999999999999998
Q ss_pred CCCC--CCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccc-cccccccccceeeeeeec
Q 040489 348 ENEE--GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKE-SFWNKSTVVEATYINIVR 412 (413)
Q Consensus 348 ~~~~--~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 412 (413)
++.. +++.+||||+|||+|+||+|||+|...+++.++..+ .+ .+.++++.|..+.+++-|
T Consensus 300 ~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~~~r~~~~d~~~-----~g~~~Ip~Gt~V~~~~~~~~r 362 (470)
T 2ij2_A 300 DPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVL-----GGEYPLEKGDELMVLIPQLHR 362 (470)
T ss_dssp SSSCCHHHHHTCHHHHHHHHHHHHHSCSSCEEEEEESSCEEE-----TTTEEECTTCEEEEEHHHHTT
T ss_pred CCCCCHHHHhCCHHHHHHHHHHHhcCCCccccceeccCCccc-----CCceEeCCCCEEEechHHhcC
Confidence 6433 788899999999999999999999854444444433 24 688999999988887765
No 16
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=100.00 E-value=3.8e-49 Score=390.70 Aligned_cols=346 Identities=15% Similarity=0.149 Sum_probs=261.2
Q ss_pred CCCCCCCc-ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCC-C
Q 040489 32 NLPPGPFN-LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLP-T 109 (413)
Q Consensus 32 ~~~PgP~~-~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~-~ 109 (413)
+.||+|++ +|++||++++.+ +++.++.++++||||||++++|+.++|+++||+++++++.+++..|.+++.... .
T Consensus 11 ~~PP~~~~~lP~iG~~~~~~~---~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~ 87 (461)
T 3ld6_A 11 KSPPYIFSPIPFLGHAIAFGK---SPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLT 87 (461)
T ss_dssp CCCCBCCCSSTTTBTHHHHHH---CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHH
T ss_pred CCCCCCCCCcCeeeeHHHhhh---CHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhh
Confidence 56777775 999999998864 578999999999999999999999999999999999999887777765542111 1
Q ss_pred cccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHH
Q 040489 110 SKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFC 189 (413)
Q Consensus 110 ~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~ 189 (413)
...++ .++.+..+|+.|+++|+.+. +.|++..++.+.+.+++.++.+++.|.+. ..+|+.+.+..++++
T Consensus 88 ~~~~g---~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 156 (461)
T 3ld6_A 88 TPVFG---KGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGES-------GEKNVFEALSELIIL 156 (461)
T ss_dssp HHHHC---TTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCSE-------EEEEHHHHHHHHHHH
T ss_pred hccCC---CccccCCCcHHHHHHHHhcc-ccccHHHHhhhhHHHHHHHHHHHHHHhhc-------CCccHHHHHHHHHHH
Confidence 12232 23334567999999999865 78999999999999988888877765421 468899999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 040489 190 LLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEES 269 (413)
Q Consensus 190 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~ 269 (413)
+++.++||.+++......+......+...+. .....+|.+ +....+.+..++.+.+.+++.+.+++++...
T Consensus 157 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~~---- 227 (461)
T 3ld6_A 157 TASHCLHGKEIRSQLNEKVAQLYADLDGGFS--HAAWLLPGW---LPLPSFRRRDRAHREIKDIFYKAIQKRRQSQ---- 227 (461)
T ss_dssp HHHHHHTCHHHHHTCCHHHHHHHHHHHTTSS--HHHHHSCTT---SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHcCcchhhhhhhhhhhhhhhhhhhhh--hHHHhhhhh---ccCcHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 9999999987633211222222222211111 111223322 1223345555666777778888887764321
Q ss_pred hhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCC
Q 040489 270 LSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGEN 349 (413)
Q Consensus 270 ~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~ 349 (413)
+...|+++.|+++..+ ++..+|+++|.+++.++++||+|||+++++|++++|++||++|+|+++|+++++|+.
T Consensus 228 ------~~~~d~l~~ll~~~~~-~~~~ls~~ei~~~~~~~~~aG~dTt~~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~ 300 (461)
T 3ld6_A 228 ------EKIDDILQTLLDATYK-DGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGEN 300 (461)
T ss_dssp ------CCCCSHHHHHHTCBCT-TSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCTT
T ss_pred ------CCCcchhhhhHHhhhc-ccCCCCHHHHHHHHHhhhhcccccccccchhhhcccccChHHHHHHHHHHHHHhccc
Confidence 1223899999987643 445699999999999999999999999999999999999999999999999999865
Q ss_pred CC----CCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 350 EE----GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 350 ~~----~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.. +++++||||+|||+||||+|||+|...++++.+.. -.++..+++++|..+.+++-|
T Consensus 301 ~~~~~~~~l~~lpyl~avi~E~lRl~p~~~~~~r~~~~d~~-----~~g~~ip~Gt~v~~~~~~~~~ 362 (461)
T 3ld6_A 301 LPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQT-----VAGYTIPPGHQVCVSPTVNQR 362 (461)
T ss_dssp CCCCCHHHHHTCHHHHHHHHHHHHHSCSCCCEEEEESSCEE-----ETTEEECTTCEEEECHHHHTT
T ss_pred ccchhHHHHHHHhhhhheeeeccccCCchhcccccccccee-----eCCcccCCCCeeeechHhhcC
Confidence 42 66789999999999999999999998777776543 456788899988888777655
No 17
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=100.00 E-value=4.1e-48 Score=381.73 Aligned_cols=353 Identities=14% Similarity=0.161 Sum_probs=267.1
Q ss_pred CCCCCCCCc-ccccccchhhhhccCCchHHHHHHHhhcC-CeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCC
Q 040489 31 TNLPPGPFN-LPVIGNLQWLLKSFSEIEPILRNLHSKLG-PVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLP 108 (413)
Q Consensus 31 ~~~~PgP~~-~pl~G~l~~~~~~~~~~~~~~~~~~~kyG-~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~ 108 (413)
.++||||++ +|++||++++.. +.+.++.+++++|| +||++++|+.++|+++||+++++++.+++..|.+++....
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~~~---~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~ 78 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQFGK---SPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSF 78 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHHHH---CHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGG
T ss_pred CCCCCCCCCCcchhccHHHHcc---CHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHH
Confidence 378999775 999999998853 56889999999999 9999999999999999999999999877777776643221
Q ss_pred CcccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHH-HHHhhccCCCCCcccchHHHHHHHH
Q 040489 109 TSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLN-HLKSESKNGDRPVPVRVLDHFQYAM 187 (413)
Q Consensus 109 ~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~vd~~~~~~~~~ 187 (413)
...+++. ++.+..+|+.|+++||.+. +.|++..++.+.+.+.++++.+++ .|.. .+ .++|+.+.+..++
T Consensus 79 ~~~~~g~---~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~---~~---~~vd~~~~~~~~~ 148 (450)
T 3gw9_A 79 MVPVFGE---GVAYAAPYPRMREQLNFLA-EELTIAKFQNFVPAIQHEVRKFMAANWDK---DE---GEINLLEDCSTMI 148 (450)
T ss_dssp GHHHHCT---TSGGGSCHHHHHHHHHHHH-HTTSGGGCTTHHHHHHHHHHHHHHHHSCS---SE---EEEEHHHHHHHHH
T ss_pred HHHHhcC---CcccCCCcHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhcc---CC---CcccHHHHHHHHH
Confidence 2223332 3334457999999999865 789999999999999998888887 5432 22 5799999999999
Q ss_pred HHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040489 188 FCLLVLMCFGDKLDESQ-IKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKE 266 (413)
Q Consensus 188 ~~vi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~ 266 (413)
+++++.++||.+++... ...+......+.... .....++|++..+ ....+++..+..+.+.+++.++++++++...
T Consensus 149 ~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~l-p~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 225 (450)
T 3gw9_A 149 INTACQCLFGEDLRKRLDARRFAQLLAKMESSL--IPAAVFLPILLKL-PLPQSARCHEARTELQKILSEIIIARKEEEV 225 (450)
T ss_dssp HHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHTC--CGGGGTCGGGGGS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchhhhhhhHHHHHHHHHHHhcc--ccchhcccchhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999998764221 223333333222221 2233456766433 2333455566677788888888887764321
Q ss_pred hhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh--hChHHHHHHHHHHHh
Q 040489 267 EESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLV--KHPHVQETVYTEIRG 344 (413)
Q Consensus 267 ~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La--~~P~vq~Kl~eEi~~ 344 (413)
.+ ++...|+++.|++...+ ++..++++++.++++++++||+|||+++++|++++|+ +||++|+|+++|+++
T Consensus 226 ~~------~~~~~d~l~~ll~~~~~-~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~~~p~~~~~l~~Ei~~ 298 (450)
T 3gw9_A 226 NK------DSSTSDLLSGLLSAVYR-DGTPMSLHEVCGMIVAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEE 298 (450)
T ss_dssp HT------SCCCCSHHHHHHHCBCT-TSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHTT
T ss_pred cc------CCccchHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHcCCcchhHHHHHHHHHHh
Confidence 11 12234899999987542 3446999999999999999999999999999999999 999999999999999
Q ss_pred hhcCCCC-CCC-CCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 345 VVGENEE-GPK-YRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 345 v~g~~~~-~~~-~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+ +.... +++ .+||||+|||+||||+|||+|...+++..++.+ .+.+.++|++|..+.+++-|
T Consensus 299 ~-~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~~-----~g~~ip~Gt~v~~~~~~~~~ 362 (450)
T 3gw9_A 299 F-PAQLNYNNVMDEMPFAERCARESIRRDPPLLMLMRKVMADVKV-----GSYVVPKGDIIACSPLLSHH 362 (450)
T ss_dssp C-CSSCCHHHHHHHCHHHHHHHHHHHHHSCSCCCEEEEECSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred c-cCCCChHHHHHhcHHHHHHHHHHHHhCCchhcccccccccccc-----CCEEECCCCEEEEChHHhhC
Confidence 8 32222 667 899999999999999999999855445555544 57889999999988887765
No 18
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=100.00 E-value=4.6e-47 Score=375.16 Aligned_cols=345 Identities=12% Similarity=0.121 Sum_probs=242.1
Q ss_pred CCCCC-CCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCc
Q 040489 32 NLPPG-PFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTS 110 (413)
Q Consensus 32 ~~~Pg-P~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~ 110 (413)
++||| |+++|++||++++. .+++.++.+++++||+||++++|+.++++++||+++++|+.+++..|.+++......
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~---~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~ 80 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFR---TDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMT 80 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHT---TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGH
T ss_pred CCCCCCCCCCCCccCHHHHh---hChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHH
Confidence 67898 88999999999874 357889999999999999999999999999999999999987656676654221111
Q ss_pred ccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHH
Q 040489 111 KIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCL 190 (413)
Q Consensus 111 ~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~v 190 (413)
..++ .++. .+|+.|+++||.+ .+.|++..++.+.+.+.++++.+++.|.. + .++|+.+.+..+++++
T Consensus 81 ~~~g---~~~~--~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~~~~----~---~~vd~~~~~~~~~~~v 147 (455)
T 2cib_A 81 PIFG---EGVV--FDASPERRKEMLH-NAALRGEQMKGHAATIEDQVRRMIADWGE----A---GEIDLLDFFAELTIYT 147 (455)
T ss_dssp HHHC--------------------------CCHHHHHHHHHHHHHHHHHHHTTCCS----E---EEEEHHHHHHHHHHHH
T ss_pred hhcC---Cccc--cCcHHHHHHHhhh-ccccCHHHHHHHHHHHHHHHHHHHHHhCC----C---CcEeHHHHHHHHHHHH
Confidence 2222 2332 3699999999987 48899999999999999998888876532 2 4699999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 040489 191 LVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESL 270 (413)
Q Consensus 191 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~ 270 (413)
+++++||.+++......+......+.... .....++|++ ....+++..+..+.+.+++.++++++++...
T Consensus 148 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~l----~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~---- 217 (455)
T 2cib_A 148 SSACLIGKKFRDQLDGRFAKLYHELERGT--DPLAYVDPYL----PIESFRRRDEARNGLVALVADIMNGRIANPP---- 217 (455)
T ss_dssp HHHHHTCHHHHTTCCHHHHHHHHHHHTTC--CGGGGTCTTC----SCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHcCCCcchhhhHHHHHHHHHHHhhh--hHHHHhcccC----CChhHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 99999998763211112222222222111 1122234433 1223344455666777888888887764321
Q ss_pred hhhhhhhhhhHHHHHHhccCCcccCC-CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCC
Q 040489 271 SIKEREYVLSYVDTLLDLQLPEEKRK-LSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGEN 349 (413)
Q Consensus 271 ~~~~~~~~~~~ld~ll~~~~~~~~~~-lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~ 349 (413)
......|+++.|++...+ ++.. +|+++|.+++.++++||+|||+++++|++|+|++||++|+|+++|++++++++
T Consensus 218 ---~~~~~~dll~~ll~~~~~-~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~~~ 293 (455)
T 2cib_A 218 ---TDKSDRDMLDVLIAVKAE-TGTPRFSADEITGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGDG 293 (455)
T ss_dssp -------CCCHHHHHHHCBCT-TSSBSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGC
T ss_pred ---CCCCcccHHHHHHHhhhh-cCCCCCCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCC
Confidence 001122899999986532 2334 99999999999999999999999999999999999999999999999999864
Q ss_pred CC---CCCCCChhHHHhhhccccccCCCCCCCcchh-hhhhhccccccccccccccccceeeeeeec
Q 040489 350 EE---GPKYRVPLFLFICIPDLRIHMHLSLDDPECV-RAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 350 ~~---~~~~~lpyl~avikEtlRl~pp~~~~~pr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.. +++.+|||++|||+|+||+|||++. ++|.+ +++.+ .+.+.++++.|..+.+++-|
T Consensus 294 ~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~-~~R~~~~d~~l-----~g~~Ip~Gt~V~~~~~~~~r 354 (455)
T 2cib_A 294 RSVSFHALRQIPQLENVLKETLRLHPPLII-LMRVAKGEFEV-----QGHRIHEGDLVAASPAISNR 354 (455)
T ss_dssp CCHHHHTTSCCHHHHHHHHHHHHHSCSCCC-EEEEECSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred CCCCHHHHhcCHHHHHHHHHHHhcCCcccc-cceeeCCCceE-----CCEEECCCCEEEEChHHhcC
Confidence 43 8899999999999999999999987 45554 44444 47888899998888777655
No 19
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=100.00 E-value=1.2e-46 Score=371.05 Aligned_cols=338 Identities=17% Similarity=0.164 Sum_probs=253.2
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcc
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSK 111 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~ 111 (413)
+.||||+++|++||++.+..+ ++ ++.+++++||+||++++++.+.++++||+++++|+.+++..|..+... ....
T Consensus 12 ~~pPgp~~~P~iG~~~~~~~~---~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~~~~ 86 (444)
T 2ve3_A 12 PIPPGDFGLPWLGETLNFLND---GD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL-STRI 86 (444)
T ss_dssp CCCCCCCCBTTTBTHHHHHHC---TT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-HHHH
T ss_pred CCCCCCCCCCccccHHHHhcC---cH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-HHHH
Confidence 679999999999999988642 45 788999999999999988888999999999999997665556532210 1112
Q ss_pred cccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHHH
Q 040489 112 IVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCLL 191 (413)
Q Consensus 112 ~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~vi 191 (413)
+++ ..++.+ .+|+.|+++||.+. +.|++..++.+.+.++++++.+++.|.. + .++|+.+.+..+++|++
T Consensus 87 ~~g--~~~l~~-~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~---~~vd~~~~~~~~~~~vi 155 (444)
T 2ve3_A 87 LLG--PNALAT-QMGEIHRSRRKILY-QAFLPRTLDSYLPKMDGIVQGYLEQWGK----A---NEVIWYPQLRRMTFDVA 155 (444)
T ss_dssp HHC--TTSGGG-CCHHHHHHHHHHHH-GGGCHHHHHTTHHHHHHHHHHHHHHHHH----S---SEEEHHHHHHHHHHHHH
T ss_pred HhC--cccccc-CCchHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhcC----C---CcEeHHHHHHHHHHHHH
Confidence 232 124433 57999999999875 7899999999999999999999998852 2 57999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 040489 192 VLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLS 271 (413)
Q Consensus 192 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~ 271 (413)
++++|| +..... ..+...+......+.. +..++|. ..+++..+..+.+.+++.++++++++..
T Consensus 156 ~~~~fG-~~~~~~-~~~~~~~~~~~~~~~~--~~~~~p~-------~~~~~~~~~~~~~~~~~~~~i~~r~~~~------ 218 (444)
T 2ve3_A 156 ATLFMG-EKVSQN-PQLFPWFETYIQGLFS--LPIPLPN-------TLFGKSQRARALLLAELEKIIKARQQQP------ 218 (444)
T ss_dssp HHHHTC-HHHHSC-TTHHHHHHHHHHHHSS--CCCCSTT-------SHHHHHHHHHHHHHHHHHHHHHHHHTSC------
T ss_pred HHHHcC-CCcccH-HHHHHHHHHHHHHHhc--CCccCCC-------cHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 999999 332111 1222222222222111 1112221 1234445556677788888888775421
Q ss_pred hhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCC
Q 040489 272 IKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEE 351 (413)
Q Consensus 272 ~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~ 351 (413)
+...|+++.|++...+ ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+++++++...
T Consensus 219 ----~~~~d~l~~ll~~~~~-~~~~l~~~~i~~~~~~~~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~~~~~ 293 (444)
T 2ve3_A 219 ----PSEEDALGILLAARDD-NNQPLSLPELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQLSQEL 293 (444)
T ss_dssp ----CCCSSHHHHHHHCBCT-TSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHSSCCSSCC
T ss_pred ----CCccCHHHHHHhcccc-CCCCCCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhccCCCC
Confidence 1123899999986532 34569999999999999999999999999999999999999999999999999886432
Q ss_pred --CCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 352 --GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 352 --~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+++.+||||+|||+|+||+|||+|...+.+.+++.+ .+.+.++|+.|..+.+++-|
T Consensus 294 ~~~~l~~lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 351 (444)
T 2ve3_A 294 TAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQF-----QGFHFPKGWLVSYQISQTHA 351 (444)
T ss_dssp CHHHHTTCHHHHHHHHHHHHHSCSSCEEEEEESSCEEE-----TTEEECTTCEEEEEHHHHTT
T ss_pred ChhhhhcChHHHHHHHHHHhcCCCccCccceeCCCeeE-----CCEEECCCCEEEechHHhcC
Confidence 788999999999999999999999854444444444 46888999999888887755
No 20
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=100.00 E-value=4e-46 Score=368.99 Aligned_cols=345 Identities=15% Similarity=0.142 Sum_probs=255.3
Q ss_pred CCCCC-CCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCC-CC
Q 040489 32 NLPPG-PFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPL-PT 109 (413)
Q Consensus 32 ~~~Pg-P~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~-~~ 109 (413)
++||| |+++|++||++++.. +++.++.+++++||+||++++|++++|++++|+.+++++.++...|..+.... ..
T Consensus 11 ~~PPg~P~~lP~iG~l~~~~~---~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~ 87 (461)
T 3i3k_A 11 KSPPYIFSPIPFLGHAIAFGK---SPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLT 87 (461)
T ss_dssp CCCCBCCCSSTTTBTHHHHHH---CHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHH
T ss_pred CCCCCCCCCCCccccHHhhcc---CHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHhh
Confidence 78999 899999999998853 56889999999999999999999999999999999999987655444321100 01
Q ss_pred cccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHH
Q 040489 110 SKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFC 189 (413)
Q Consensus 110 ~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~ 189 (413)
..+++ .++.+..+|+.|+++||.+. +.|++..++.+.+.+.++++.+++.|.. . ..+|+.+.+..++++
T Consensus 88 ~~~~g---~g~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~ll~~l~~---~----~~~dl~~~~~~~~~~ 156 (461)
T 3i3k_A 88 TPVFG---KGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE---S----GEKNVFEALSELIIL 156 (461)
T ss_dssp HHHHC---TTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS---E----EEEEHHHHHHHHHHH
T ss_pred hhhcC---CeeeeCCCcHHHHHHHHHHh-hhhCHHHHHHHHHHHHHHHHHHHHHhhh---c----CCcCHHHHHHHHHHH
Confidence 12232 23434446999999999875 7899999999999998888888776642 1 358999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 040489 190 LLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEES 269 (413)
Q Consensus 190 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~ 269 (413)
++++++||.++.......+......+...+. .....+|.+ +....+++..+..+.+.+++.++++++++..
T Consensus 157 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~~---l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---- 227 (461)
T 3i3k_A 157 TASHCLHGKEIRSQLNEKVAQLYADLDGGFS--HAAWLLPGW---LPLPSFRRRDRAHREIKDIFYKAIQKRRQSQ---- 227 (461)
T ss_dssp HHHHHHTCHHHHHTCCHHHHHHHHHHHTTSS--HHHHHSCTT---SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHccHhhhhHHHHHHHHHHHHHHhccc--cchhhcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 9999999976532111122222222111110 111223322 1223345555666777778888777764321
Q ss_pred hhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCC
Q 040489 270 LSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGEN 349 (413)
Q Consensus 270 ~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~ 349 (413)
+...|+++.+++...+ ++..++++++.++++++++||+|||+++++|++++|++||++|+|+++|+++++|++
T Consensus 228 ------~~~~d~l~~ll~~~~~-~~~~l~~~~i~~~~~~l~~ag~~Tt~~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~~~ 300 (461)
T 3i3k_A 228 ------EKIDDILQTLLDATYK-DGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGEN 300 (461)
T ss_dssp ------CCCCSHHHHHHTCBCT-TSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCTT
T ss_pred ------cccccHHHHHHHhhhc-cCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCC
Confidence 1123899999986542 344699999999999999999999999999999999999999999999999999865
Q ss_pred CC----CCCCCChhHHHhhhccccccCCCCCCCcchh-hhhhhccccccccccccccccceeeeeeec
Q 040489 350 EE----GPKYRVPLFLFICIPDLRIHMHLSLDDPECV-RAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 350 ~~----~~~~~lpyl~avikEtlRl~pp~~~~~pr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.. +++.+|||++|||+||||+|||++. ++|.+ .++.+ .+...++++.|..+.+++-|
T Consensus 301 ~~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~-~~r~~~~d~~~-----~g~~ip~G~~v~~~~~~~~~ 362 (461)
T 3i3k_A 301 LPPLTYDQLKDLNLLDRCIKETLRLRPPIMI-MMRMARTPQTV-----AGYTIPPGHQVCVSPTVNQR 362 (461)
T ss_dssp CCCCCHHHHHTCHHHHHHHHHHHHHSCSCCC-EEEEECSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred CCCCCHHHHhcChHHHHHHHHHHhcCCCccc-cccccCCCccC-----CCEEECCCCEEEEChHHhcC
Confidence 32 6788999999999999999999976 45654 44433 57888899988887776654
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=100.00 E-value=8.5e-46 Score=367.28 Aligned_cols=344 Identities=13% Similarity=0.158 Sum_probs=234.1
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCC-CCc
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPL-PTS 110 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~-~~~ 110 (413)
..||||+++|++||++++.. +++.++.++++ ||||+++++|+.++++++||+.+++|+.++ .|..+.... ...
T Consensus 23 eppPgP~~~P~iG~~~~~~~---~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~ 96 (467)
T 3dbg_A 23 EPPVAGGGVPLLGHGWRLAR---DPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLE 96 (467)
T ss_dssp BCCEECCCCSTTHHHHHHHH---CHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC-----------
T ss_pred CCCCCCCCCCcccchHHhcc---CHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHH
Confidence 35789999999999999864 56888899987 999999999999999999999999999765 553332211 112
Q ss_pred ccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHH
Q 040489 111 KIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCL 190 (413)
Q Consensus 111 ~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~v 190 (413)
.+++ ..++. ..+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|.. + .++|+.+.+..+++++
T Consensus 97 ~~~g--~~~l~-~~dg~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~---~~~d~~~~~~~~~~~v 165 (467)
T 3dbg_A 97 GLLG--KEGVA-TANGPLHRRQRRTIQ-PAFRLDAIPAYGPIMEEEAHALTERWQP----G---KTVDATSESFRVAVRV 165 (467)
T ss_dssp ----------------------CGGGH-HHHSTTTSTTTHHHHHHHHHHHHHHSCT----T---SCEEHHHHHHHHHHHH
T ss_pred HhcC--CCCcc-cCCcHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhcc----C---CcCcHHHHHHHHHHHH
Confidence 2222 12443 357999999999865 8899999999999999999999887742 2 5799999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccc--cchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040489 191 LVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPR--LSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEE 268 (413)
Q Consensus 191 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~ 268 (413)
++.++||.+++......+............ ...++|+ +.. +.....++..+..+.+.+++.++++++++..
T Consensus 166 i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~--- 238 (467)
T 3dbg_A 166 AARCLLRGQYMDERAERLCVALATVFRGMY---RRMVVPLGPLYR-LPLPANRRFNDALADLHLLVDEIIAERRASG--- 238 (467)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHhCCcccchhHHHHHHHHHHHHHHHH---HHhccchhhhhh-CCChHhHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 999999999875433344333333322211 1122332 111 1122233444455667777777777765321
Q ss_pred hhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcC
Q 040489 269 SLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGE 348 (413)
Q Consensus 269 ~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~ 348 (413)
+...|+++.|++...+ ++..++++++.++++++++||+|||+++++|++|+|++||++|+|+++|+++++|+
T Consensus 239 -------~~~~dll~~ll~~~~~-~~~~ls~~ei~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~ 310 (467)
T 3dbg_A 239 -------QKPDDLLTALLEAKDD-NGDPIGEQEIHDQVVAILTPGSETIASTIMWLLQALADHPEHADRIRDEVEAVTGG 310 (467)
T ss_dssp -------SSCCSHHHHHTTC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTT
T ss_pred -------CCchHHHHHHHhhccC-CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 1123899999986532 33469999999999999999999999999999999999999999999999999986
Q ss_pred CCC--CCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 349 NEE--GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 349 ~~~--~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
... +++.+||||+|||+|+||+|||++...+++..++.+ .+...++|++|..+.+++-|
T Consensus 311 ~~~~~~~l~~l~yl~a~i~E~lRl~p~~~~~~R~~~~d~~l-----~g~~Ip~Gt~V~~~~~~~~r 371 (467)
T 3dbg_A 311 RPVAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESEL-----GGYRIPAGADIIYSPYAIQR 371 (467)
T ss_dssp SCCCHHHHTTCHHHHHHHHHHHHHSCSCCCEEEECSSCEEE-----TTEEECTTCEEEECHHHHHT
T ss_pred CCCCHHHHhhCHHHHHHHHHHhhcCCCccccceeeCCCccC-----CCEEECCCCEEEEChHHhcC
Confidence 433 888999999999999999999999854444445444 46888899998888777654
No 22
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=100.00 E-value=3.9e-44 Score=354.13 Aligned_cols=333 Identities=15% Similarity=0.174 Sum_probs=243.0
Q ss_pred CCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCC-CcccccC--CCcceEeccCChhHH
Q 040489 54 SEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLP-TSKIVSS--NQHNISSASYGTTWR 130 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~-~~~~~~~--~~~~i~~~~~g~~w~ 130 (413)
..+|..+.+|+++|||||++++|+.++|+++||+++++||.+ ..|.+++..+. ....++. .+.++.+..+|+.|+
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~ 87 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH 87 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchhHHHHHHhhcccccCCCcccCCChHHHH
Confidence 357888999999999999999999999999999999999953 23443321110 0011110 012343445799999
Q ss_pred HHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHHHHHHHhcCCCChHH--HHHH
Q 040489 131 LFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCLLVLMCFGDKLDESQ--IKKI 208 (413)
Q Consensus 131 ~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~--~~~~ 208 (413)
++||.+. +.|+++.++.+.+.+++.++.+++.|......+ .++|+.+.+..+++|+|+.++||.+++... ...+
T Consensus 88 ~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~---~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~ 163 (456)
T 3mdm_A 88 KQRRVID-LAFSRSSLVSLMETFNEKAEQLVEILEAKADGQ---TPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPL 163 (456)
T ss_dssp HHHHHHG-GGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSS---SCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCCHHH
T ss_pred HHHhhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CeeeHHHHHHHHHHHHHHHHHcCCChhhhcccccHH
Confidence 9999875 789999999999999999999999998765433 689999999999999999999999885311 1112
Q ss_pred HHHHHHHHHHhcC--CcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHH
Q 040489 209 ENVQRTQLLAFGN--FNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLL 286 (413)
Q Consensus 209 ~~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll 286 (413)
..........+.. ..+..++|.. .+..+...+..+.+.+++.++++++++..... .+.+.|+++.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~------~~~~~d~l~~ll 232 (456)
T 3mdm_A 164 SQAVKLMLEGITASRNTLAKFLPGK-----RKQLREVRESIRFLRQVGRDWVQRRREALKRG------EEVPADILTQIL 232 (456)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCGGG-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------ccchhhHHHHHH
Confidence 1111111111110 1122223321 11223334445566677777777776543211 122348999999
Q ss_pred hccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCC---CCCCCChhHHHh
Q 040489 287 DLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEE---GPKYRVPLFLFI 363 (413)
Q Consensus 287 ~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~---~~~~~lpyl~av 363 (413)
+.. +..++++++.+++.++++||+|||+++++|++|+|++||++|+|+++|+++++|++.. +++.+||||+||
T Consensus 233 ~~~----~~~~~~~~l~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~a~ 308 (456)
T 3mdm_A 233 KAE----EGAQDDEGLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQYLSQV 308 (456)
T ss_dssp HHT----SSCSSSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCSSCCHHHHHHCHHHHHH
T ss_pred Hhc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCCCCCHHHHhcCHHHHHH
Confidence 753 2357899999999999999999999999999999999999999999999999986543 788999999999
Q ss_pred hhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 364 CIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 364 ikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+||||+|||+|...+++..+..+ .+.+.+++++|..+.+++-|
T Consensus 309 i~E~lRl~p~~~~~~r~~~~d~~i-----~g~~Ip~Gt~v~~~~~~~~~ 352 (456)
T 3mdm_A 309 LKESLRLYPPAWGTFRLLEEETLI-----DGVRVPGNTPLLFSTYVMGR 352 (456)
T ss_dssp HHHHHHHCCSSCCEEEEECSCEEE-----TTEEECSSEEEEECHHHHHT
T ss_pred HHHHHHhCCCccccccccCCceeE-----CCEEECCCCEEEeehHHhcC
Confidence 999999999999776666555544 46889999999888887755
No 23
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=100.00 E-value=1.6e-42 Score=345.94 Aligned_cols=359 Identities=16% Similarity=0.112 Sum_probs=246.6
Q ss_pred hhcCCCCCCCCCCCCCc-ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCc-cc
Q 040489 23 VIISPKYKTNLPPGPFN-LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGA-IF 100 (413)
Q Consensus 23 ~~~~~~~~~~~~PgP~~-~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~-~f 100 (413)
+++.++...++||||++ +|++||++.+. .+++.++.+++++|||||++++|+.++++++||+++++++.+... .|
T Consensus 4 ~~~~~~~~~~~PPgp~~~lPliG~~~~~~---~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~ 80 (491)
T 3v8d_A 4 KTSSRRRQTGEPPLENGLIPYLGCALQFG---ANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDW 80 (491)
T ss_dssp ---CCCCCTTSCCEEEEEESSTTTTGGGT---CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEES
T ss_pred hhhhhccCCCCCCCCCCCcceeccHHHHh---cCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccch
Confidence 44455666689999999 69999999984 468999999999999999999999999999999999999965431 23
Q ss_pred ccCCCCCCCcccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchH
Q 040489 101 ADRPRPLPTSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVL 180 (413)
Q Consensus 101 ~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~ 180 (413)
..++.. ....+++.+ .+ ...+|+.|+++||.+ .+.|++..++.+.+.+.+.++.+++.+......+.....+++.
T Consensus 81 ~~~~~~-~~~~~~g~~--~~-~~~~g~~~~~~Rr~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~ 155 (491)
T 3v8d_A 81 KKFHFA-LSAKAFGHR--SI-DPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMY 155 (491)
T ss_dssp SHHHHH-HHHHHHTCC--CC-CGGGSSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHH
T ss_pred HHHHHH-HHHHhcCCc--cc-ccccchhHHHHHHHH-HHHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHH
Confidence 222111 122333322 22 234799999999975 4789999999999998888887776432221110012567899
Q ss_pred HHHHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHH
Q 040489 181 DHFQYAMFCLLVLMCFGDKLDE--SQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLI 258 (413)
Q Consensus 181 ~~~~~~~~~vi~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 258 (413)
+.+..+++++++..+||.+... .....+......+.. +.+.+|.+...+....+++..++.+.+.+++.+.+
T Consensus 156 ~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~p~~~~~~~~~a~~~l~~~~~~~~ 229 (491)
T 3v8d_A 156 SFCYRVMFEAGYLTIFGRDLTRRDTQKAHILNNLDNFKQ------FDKVFPALVAGLPIHMFRTAHNAREKLAESLRHEN 229 (491)
T ss_dssp HHHHHHHHHHHHHHHHCBCCSCGGGHHHHHHHHHHHHHH------HHHHHHHHHTTCCGGGCHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHHHcCccccccchhhhhhHHHHHHHHH------HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998642 111222222211111 11223322221222233444455555544443333
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHH
Q 040489 259 RARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETV 338 (413)
Q Consensus 259 ~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl 338 (413)
++++ +...|+++.++.... +++.++++++..+++.+++||+|||+++++|++++|++||++|+|+
T Consensus 230 ~~~~-------------~~~~d~l~~l~~~~~--~~~~~~~~ei~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~~~~l 294 (491)
T 3v8d_A 230 LQKR-------------ESISELISLRMFLND--TLSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAA 294 (491)
T ss_dssp HTTC-------------BSCCHHHHHHHHHHH--HHBCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSHHHHHHH
T ss_pred Hhcc-------------ccccHHHHHHHHHhh--ccCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 2221 112378888886542 3346999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCC------------C-CCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccce
Q 040489 339 YTEIRGVVGENE------------E-GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEA 405 (413)
Q Consensus 339 ~eEi~~v~g~~~------------~-~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
++||++++++.. . +++.+||||+|||+|+||+||+ +...+.+..++.++.. +.+...++++.|..
T Consensus 295 ~~Ei~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~a~i~E~lRl~p~-~~~~R~~~~d~~~~~~-~~g~~ip~G~~v~~ 372 (491)
T 3v8d_A 295 TEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSA-SLNIRTAKEDFTLHLE-DGSYNIRKDDIIAL 372 (491)
T ss_dssp HHHHHHHHHHTTCCCCSSSSCCCCCHHHHHCCHHHHHHHHHHHHHHEE-ECEEEEESSSEEEECS-SCEEEECTTCEEEE
T ss_pred HHHHHHHhhccccccccccccccCCHHHHhcChHHHHHHHHHhhcCCC-CccceeccCCeeEeec-CCcEEeCCCCEEEe
Confidence 999999987531 1 4556999999999999999984 4544445555555332 25778889988877
Q ss_pred eeeeeec
Q 040489 406 TYINIVR 412 (413)
Q Consensus 406 ~~~~~~~ 412 (413)
..+++-|
T Consensus 373 ~~~~~~~ 379 (491)
T 3v8d_A 373 YPQLMHL 379 (491)
T ss_dssp CTHHHHT
T ss_pred cchhhcC
Confidence 7666544
No 24
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=100.00 E-value=1.1e-41 Score=339.64 Aligned_cols=350 Identities=16% Similarity=0.114 Sum_probs=229.5
Q ss_pred CCCCCCCCc-ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcC-cccccCCCCCC
Q 040489 31 TNLPPGPFN-LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNG-AIFADRPRPLP 108 (413)
Q Consensus 31 ~~~~PgP~~-~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~-~~f~~r~~~~~ 108 (413)
.+.||||++ +|++||++++. .+++.++.+++++||+||++++|+.++|+++||+++++++.++. ..|..+... .
T Consensus 12 ~~~pPgp~~~~P~iG~~~~~~---~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~-~ 87 (491)
T 3dax_A 12 TGEPPLENGLIPYLGCALQFG---ANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA-T 87 (491)
T ss_dssp TTCCCEEEEEESCTTTTGGGT---CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHH-H
T ss_pred CCCCCcCCCcccchhhHHHHh---hCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHH-H
Confidence 368899998 89999999874 35788999999999999999999999999999999999996543 122221100 0
Q ss_pred CcccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHH
Q 040489 109 TSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMF 188 (413)
Q Consensus 109 ~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~ 188 (413)
....++. ++....+|+.|+++|+.+. +.|++..++.+.+.+.+.+...++..............+++.+.+..+++
T Consensus 88 ~~~~~g~---~~~~~~~g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~ 163 (491)
T 3dax_A 88 SAKAFGH---RSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMF 163 (491)
T ss_dssp HHHHHTC---CCCCGGGTSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHH
T ss_pred HHHHcCC---CcccccchhHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHH
Confidence 1122322 2221346889999998875 67888888888777665555554433211000111135788888999999
Q ss_pred HHHHHHHhcCCCChH--HHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040489 189 CLLVLMCFGDKLDES--QIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKE 266 (413)
Q Consensus 189 ~vi~~~~fG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~ 266 (413)
++++.++||.+.+.. ....+......+.. +.+.+|++...+....+++..+..+.+.+.+ ++++.+..
T Consensus 164 ~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~------~~~~~p~l~~~lp~~~~~~~~~~~~~~~~~~---~~~~~~~~- 233 (491)
T 3dax_A 164 EAGYLTIFGRDLTRRDTQKAHILNNLDNFKQ------FDKVFPALVAGLPIHMFRTAHNAREKLAESL---RHENLQKR- 233 (491)
T ss_dssp HHHHHHHHCBCSTTGGGHHHHHHHHHHHHHH------HHHHHHHHHTTCCGGGSHHHHHHHHHHHHHT---SHHHHTTC-
T ss_pred HHhHHHHcCcccccccchhhhhhHHHHHHHH------HHHHhHHHHHhCCHhhhhHHHHHHHHHHHHH---HHHHhhcc-
Confidence 999999999887532 11112221111110 1123443322111111222222222222211 12221110
Q ss_pred hhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhh
Q 040489 267 EESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVV 346 (413)
Q Consensus 267 ~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~ 346 (413)
+...|+++.+++... +.+.++++++.++++++++||+|||+++++|++++|++||++|+|+++||++++
T Consensus 234 ---------~~~~d~l~~ll~~~~--~~~~~~~~~i~~~~~~~~~ag~~tta~tl~~~l~~L~~~P~~~~kl~~Ei~~v~ 302 (491)
T 3dax_A 234 ---------ESISELISLRMFLND--TLSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTL 302 (491)
T ss_dssp ---------BSCCHHHHHHHHHHH--HHBCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ---------cchhHHHHHHHHHHH--hcCCChHHHHHHHHHHHHHHhccchHHHHHHHHHHHHcCHHHHHHHHHHHHHHh
Confidence 112378998886542 223589999999999999999999999999999999999999999999999999
Q ss_pred cCCC------------C-CCCCCChhHHHhhhccccccCCCCCCCcchh-hhhhhccccccccccccccccceeeeeeec
Q 040489 347 GENE------------E-GPKYRVPLFLFICIPDLRIHMHLSLDDPECV-RAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 347 g~~~------------~-~~~~~lpyl~avikEtlRl~pp~~~~~pr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|++. . +++.+||||+|||+||||+||+ |. ++|.+ .++.++.+ +.+++.+++++|..+.+++-|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~-~~-~~R~~~~d~~l~~~-~~g~~ip~Gt~v~~~~~~~~~ 379 (491)
T 3dax_A 303 ENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSA-SL-NIRTAKEDFTLHLE-DGSYNIRKDDIIALYPQLMHL 379 (491)
T ss_dssp HTTTCCCCSSSCCCCCCHHHHHCCHHHHHHHHHHHHHHEE-EC-EEEEESSSEEEEET-TEEEEECTTCEEEECTHHHHT
T ss_pred hccccccccCCCccccCHHHHhcCHHHHHHHHHHHhcCCC-cc-ceeEecCCeEeecC-CCcEEeCCCCEEEechHhhcC
Confidence 7531 2 6778999999999999999985 65 46655 34444321 146789999999888887655
No 25
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=100.00 E-value=1.4e-39 Score=319.61 Aligned_cols=313 Identities=14% Similarity=0.105 Sum_probs=227.7
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccccCCCCCCCc
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTS 110 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~ 110 (413)
+.||||+++|++||+..... .+++.++.++ ++||||+++++ |+.++++++||+++++||.++ .|.+++... ..
T Consensus 26 ~~~PGP~~~p~lG~~~~~~~--~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~-~~ 99 (436)
T 2cd8_A 26 QGTTASPPVLDLGALGQDFA--ADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNS-TT 99 (436)
T ss_dssp --------CCBHHHHHHHHH--HCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGC-SS
T ss_pred cCCCCCCccccCCCCCcccc--cChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccc-cc
Confidence 78999999999999864322 3578899999 99999999997 788899999999999999765 576654311 11
Q ss_pred ccc---cCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHH
Q 040489 111 KIV---SSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYA 186 (413)
Q Consensus 111 ~~~---~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~ 186 (413)
... ...+.++. ..+|+.|+++||.+. +.|++..++.+.+.+++.++.+++.|... .+ .++|+.+.+ ..+
T Consensus 100 ~~~~~~~~~~~~l~-~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~---~~vd~~~~~~~~~ 172 (436)
T 2cd8_A 100 PLTEAEAALNHNML-ESDPPRHTRLRKLVA-REFTMRRVELLRPRVQEIVDGLVDAMLAA--PD---GRADLMESLAWPL 172 (436)
T ss_dssp CCCTTGGGTCCSGG-GCCTTHHHHHHHHHG-GGSSHHHHHTTHHHHHHHHHHHHHHHHTC--TT---SCEEHHHHTTTHH
T ss_pred cccccccccccccc-ccCchHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc--cC---CCcchHHHHHHHH
Confidence 110 11123443 358999999999875 78999999999999999999999999742 12 579998877 579
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040489 187 MFCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKE 266 (413)
Q Consensus 187 ~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~ 266 (413)
++++|+. +||.+.++. ..+......++ .. . .| ++..+....+.+++.++++++++..
T Consensus 173 ~~~vi~~-~~G~~~~~~--~~~~~~~~~~~----~~--~--~~-----------~~~~~~~~~~~~~~~~~i~~r~~~~- 229 (436)
T 2cd8_A 173 PITVISE-LLGVPEPDR--AAFRVWTDAFV----FP--D--DP-----------AQAQTAMAEMSGYLSRLIDSKRGQD- 229 (436)
T ss_dssp HHHHHHH-HHTCCGGGH--HHHHHHHHHHH----SC--S--ST-----------THHHHHHHHHHHHHHHHHHHHTTSC-
T ss_pred HHHHHHH-HhCCCHHHH--HHHHHHHHHHh----cc--C--CH-----------HHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 9999998 799876431 22222222111 10 0 01 1233445566777778787764321
Q ss_pred hhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhh
Q 040489 267 EESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVV 346 (413)
Q Consensus 267 ~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~ 346 (413)
..|+++.|++... +++..+|+++|.+++.++++||+|||+++++|++++|++||++|+|+++|+
T Consensus 230 -----------~~d~l~~ll~~~~-~~~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~e~---- 293 (436)
T 2cd8_A 230 -----------GEDLLSALVRTSD-EDGSRLTSEELLGMAHILLVAGHETTVNLIANGMYALLSHPDQLAALRADM---- 293 (436)
T ss_dssp -----------CCSHHHHHHHHHH-HCTTTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCHHHHHHHHHCG----
T ss_pred -----------CCCHHHHHHHhhh-ccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHhhCh----
Confidence 1279999987542 124569999999999999999999999999999999999999999999984
Q ss_pred cCCCCCCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 347 GENEEGPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 347 g~~~~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.|++|||+|+||+|||+|+.++|.+. ++.+ .+...+++++|..+.+++-|
T Consensus 294 -----------~~l~a~i~E~lRl~p~~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 344 (436)
T 2cd8_A 294 -----------TLLDGAVEEMLRYEGPVESATYRFPVEPVDL-----DGTVIPAGDTVLVVLADAHR 344 (436)
T ss_dssp -----------GGHHHHHHHHHHHHCSBSSCCCBEESSCEEE-----TTEEECTTCCEEECHHHHTT
T ss_pred -----------hhHHHHHHHHHHhcCcccCceeEEeCCCeEE-----CCEEECCCCEEEeChHHhCC
Confidence 38999999999999999977777664 3333 47889999999988887765
No 26
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=100.00 E-value=1.2e-38 Score=309.98 Aligned_cols=314 Identities=13% Similarity=0.099 Sum_probs=227.5
Q ss_pred CCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-CccEEEEeChHHHHHHHHhcC-cccccCCCCCCCc
Q 040489 33 LPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-PRPAIFIADRSLAHKALVQNG-AIFADRPRPLPTS 110 (413)
Q Consensus 33 ~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-~~~~v~i~dpe~i~~il~~~~-~~f~~r~~~~~~~ 110 (413)
+||||+++|++||+.+ +++..+.++. +||||+++.++ +.+.+++++++.++++|.++. ..+.+++......
T Consensus 2 ~pPGp~~~P~~g~~~~------~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~ 74 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP------EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELS 74 (404)
T ss_dssp ----CCBSSCCCSSTT------SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCS
T ss_pred CCCCCCCCCCCCCcCC------CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcccc
Confidence 5899999999999874 4677788885 69999988864 455677899999999997652 2333333221111
Q ss_pred cc---ccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHH
Q 040489 111 KI---VSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAM 187 (413)
Q Consensus 111 ~~---~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~ 187 (413)
.. ...+..++. ..+|+.|+++||.+ .+.|++..++.+.+.+++.++.+++.|......+ .++|+.+.+...+
T Consensus 75 ~~~~~~~~~~~~l~-~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~---~~~d~~~~~~~~~ 149 (404)
T 1jfb_A 75 ASGKQAAKAKPTFV-DMDPPEHMHQRSMV-EPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCAN---GPVDLVKEFALPV 149 (404)
T ss_dssp HHHHHHTTSCCCGG-GCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTT---SCEEHHHHTTTHH
T ss_pred ccccchhcccCccc-ccCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCccHHHHHHHHH
Confidence 10 011122343 35799999999976 5889999999999999999999999998654323 5799999999989
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040489 188 FCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEE 267 (413)
Q Consensus 188 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~ 267 (413)
.++++..+||.+.++.. .+.... ..+. .+.| ..++..+..+.+.+++.++++++++..
T Consensus 150 ~~~i~~~~~G~~~~~~~--~~~~~~----~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~i~~r~~~~-- 207 (404)
T 1jfb_A 150 PSYIIYTLLGVPFNDLE--YLTQQN----AIRT-----NGSS---------TAREASAANQELLDYLAILVEQRLVEP-- 207 (404)
T ss_dssp HHHHHHHHHTCCGGGHH--HHHHHH----HHHH-----CTTS---------CHHHHHHHHHHHHHHHHHHHHHHHHSC--
T ss_pred HHHHHHHHcCCCHHHHH--HHHHHH----HHHh-----ccCc---------chHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 99999999998874321 111111 1100 0111 123334455567777778887765321
Q ss_pred hhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhc
Q 040489 268 ESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVG 347 (413)
Q Consensus 268 ~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g 347 (413)
..|+++.|++... ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|++++
T Consensus 208 ----------~~d~l~~ll~~~~--~~~~l~~~ei~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~~------ 269 (404)
T 1jfb_A 208 ----------KDDIISKLCTEQV--KPGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQHPDQLAQLKAN------ 269 (404)
T ss_dssp ----------CSSHHHHHHHHTT--TTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHC------
T ss_pred ----------CCcHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHhC------
Confidence 1279999996442 2346999999999999999999999999999999999999999999982
Q ss_pred CCCCCCCCCChhHHHhhhccccccCCCCCCCcchhhh-hhhccccccccccccccccceeeeeeec
Q 040489 348 ENEEGPKYRVPLFLFICIPDLRIHMHLSLDDPECVRA-IWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 348 ~~~~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.+|++|||+|+||+|||+|+.++|.+.+ +.+ .+.+.+++++|..+.+++-|
T Consensus 270 ---------~~yl~a~i~E~lRl~p~~~~~~~R~~~~d~~~-----~g~~Ip~Gt~V~~~~~~~~r 321 (404)
T 1jfb_A 270 ---------PSLAPQFVEELCRYHTASALAIKRTAKEDVMI-----GDKLVRANEGIIASNQSANR 321 (404)
T ss_dssp ---------GGGHHHHHHHHHHHSCSCCSCCEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred ---------hHhHHHHHHHHHhhCCCccccceeeeCCCeeE-----CCEEECCCCEEEeCHHhhCC
Confidence 3699999999999999999878887653 333 46888999999888887765
No 27
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=100.00 E-value=2.2e-39 Score=323.74 Aligned_cols=350 Identities=14% Similarity=0.091 Sum_probs=224.6
Q ss_pred CCCCCCCCCc-ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCC-
Q 040489 30 KTNLPPGPFN-LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPL- 107 (413)
Q Consensus 30 ~~~~~PgP~~-~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~- 107 (413)
..++||||++ +|++||++++.. +.+.++.+++++||+||++++|+.++|+++||+++++++.++...+..++...
T Consensus 16 ~~~~PPgp~~~~P~iG~~~~~~~---~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~ 92 (498)
T 3b6h_A 16 RPGEPPLDLGSIPWLGYALDFGK---DAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIF 92 (498)
T ss_dssp CTTCCCEECCSSTTTBTHHHHHH---CHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHHH
T ss_pred CCCCCCCCCCCCcchhhHHHhcc---CHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHHH
Confidence 3478999998 899999998853 46889999999999999999999999999999999999976543122221110
Q ss_pred CCcccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHH
Q 040489 108 PTSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAM 187 (413)
Q Consensus 108 ~~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~ 187 (413)
.....++. +.. ..+|+.|++.+ .+.|++..++.+.+.+.+.+...++.+...... ....+++.+.+..++
T Consensus 93 ~~~~~~g~---~~~-~~~~~~~rr~~----~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~l~~~~~~vi 162 (498)
T 3b6h_A 93 LMERIFDV---QLP-HYSPSDEKARM----KLTLLHRELQALTEAMYTNLHAVLLGDATEAGS--GWHEMGLLDFSYSFL 162 (498)
T ss_dssp HHHHTSCC---CCT-TCCHHHHHHHH----HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SCEEEEHHHHHHHHH
T ss_pred HHHHHcCC---Ccc-ccCHHHHHHHH----HHhhchHhHHHHHHHHHHHHHHHHhhcccccCC--CcceecHHHHHHHHH
Confidence 01112221 221 24577775433 357888888888766655555544433221111 113578888889999
Q ss_pred HHHHHHHHhcCCCChHHH---HHHHHHHHHHHHHhcCCcccccccccchhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040489 188 FCLLVLMCFGDKLDESQI---KKIENVQRTQLLAFGNFNILNFWPRLSKIVF-VKKWEQFLQMRRDQENVLVPLIRARKK 263 (413)
Q Consensus 188 ~~vi~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~-~~~~~~~~~~~~~~~~~i~~~i~~r~~ 263 (413)
+++++.++||.+++.... .............+. .+.+.+|++...+. ...+++..+..+.+.+ .+++++.+
T Consensus 163 ~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 237 (498)
T 3b6h_A 163 LRAGYLTLYGIEALPRTHESQAQDRVHSADVFHTFR--QLDRLLPKLARGSLSVGDKDHMCSVKSRLWK---LLSPARLA 237 (498)
T ss_dssp HHHHHHHHHCBSCSSCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH---HTCHHHHT
T ss_pred HHHHHHhhcCcccccccccchhhHHHhhHHHHHHHH--HHHhhHHHHHHHhcCchhhHHHHHHHHHHHH---HHHHHHHh
Confidence 999999999987632111 001111111111111 11233443322111 1122233232222221 11122211
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHH
Q 040489 264 MKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIR 343 (413)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~ 343 (413)
. . +...|+++.+++... +++.++++++. +++++++||+|||+++++|++++|++||++|+|+++|++
T Consensus 238 ~----~------~~~~d~l~~ll~~~~--~~~~~~~~~~~-~~~~~l~ag~~tt~~~l~~~l~~L~~~P~~~~kl~~Ei~ 304 (498)
T 3b6h_A 238 R----R------AHRSKWLESYLLHLE--EMGVSEEMQAR-ALVLQLWATQGNMGPAAFWLLLFLLKNPEALAAVRGELE 304 (498)
T ss_dssp T----C------BSCCHHHHHHHHHHH--HTTCCHHHHHH-HHHHHHHHHHTTHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred c----c------ccHHHHHHHHHHHHH--hCCCCHHHHHH-HHHHHHHHhhhchHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 1 0 123389999887542 22347788888 888999999999999999999999999999999999999
Q ss_pred hhhcCCC---------C-CCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeee-ee
Q 040489 344 GVVGENE---------E-GPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYIN-IV 411 (413)
Q Consensus 344 ~v~g~~~---------~-~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 411 (413)
+++|++. . +++.+||||+|||+||||+||+ |. ++|.+. +..++.....+++.+++++|..+.|+ +-
T Consensus 305 ~v~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~-~~-~~R~~~~d~~~~~~~g~g~~ip~Gt~v~~~~~~~~~ 382 (498)
T 3b6h_A 305 SILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTAA-PF-ITREVVVDLAMPMADGREFNLRRGDRLLLFPFLSPQ 382 (498)
T ss_dssp HHHHC----------CCTHHHHSCHHHHHHHHHHHHHHBC-BC-EEEEECSCEEEECTTSCEEEECTTCEEEECTCCCCC
T ss_pred HHhcccCCCCCcccccCHHHHhcCHHHHHHHHHHHhccCC-Cc-ceeeecCCeeeecCCCCeEEeCCCCEEEeCchHhhc
Confidence 9998532 2 6778999999999999999985 65 566554 44432210147899999999998888 76
Q ss_pred c
Q 040489 412 R 412 (413)
Q Consensus 412 ~ 412 (413)
|
T Consensus 383 ~ 383 (498)
T 3b6h_A 383 R 383 (498)
T ss_dssp T
T ss_pred C
Confidence 5
No 28
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=100.00 E-value=2.8e-39 Score=322.76 Aligned_cols=351 Identities=13% Similarity=0.088 Sum_probs=231.8
Q ss_pred CCCCCCCCcccccccchhhhh--ccCCchHHHHHHHhhcCC-eEEEEcCCccE-------EEEeChHHHHHHHHhcC---
Q 040489 31 TNLPPGPFNLPVIGNLQWLLK--SFSEIEPILRNLHSKLGP-VVTLFIGPRPA-------IFIADRSLAHKALVQNG--- 97 (413)
Q Consensus 31 ~~~~PgP~~~pl~G~l~~~~~--~~~~~~~~~~~~~~kyG~-i~~~~~g~~~~-------v~i~dpe~i~~il~~~~--- 97 (413)
.+.||||+|||++|+++++.. ...+++.++.++++|||+ ||++++++.++ +++++++..+.++....
T Consensus 27 ~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v~k 106 (495)
T 3dsk_A 27 IRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVEK 106 (495)
T ss_dssp BCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTEEC
T ss_pred CCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccccccc
Confidence 468999999999999988863 235788999999999999 99999998887 66677766555542211
Q ss_pred -cccccCCCCCCCcccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 040489 98 -AIFADRPRPLPTSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVP 176 (413)
Q Consensus 98 -~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (413)
..|...... ...+++..........+|+.|+++|+.+. +.|++.. +.+.+.+++.++.+++.|......+ .+
T Consensus 107 ~~~~~~~~~~--~~~l~g~~~~~~~~~~~g~~h~~~R~~~~-~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~---~~ 179 (495)
T 3dsk_A 107 KDLLTGTYMP--STELTGGYRILSYLDPSEPKHEKLKNLLF-FLLKSSR-NRIFPEFQATYSELFDSLEKELSLK---GK 179 (495)
T ss_dssp SSCTTSSSCC--CGGGGTTCCCGGGCCTTSHHHHHHHHHHH-HHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHH---SS
T ss_pred cccccccCCC--CccccCCCcceeeeCCCchHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccC---CC
Confidence 122121111 11444422212223357999999999876 6777754 8899999999999999997643222 57
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHH
Q 040489 177 VRVLDHFQYAMFCLLVLMCFGDKLDESQI-KKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLV 255 (413)
Q Consensus 177 vd~~~~~~~~~~~vi~~~~fG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~ 255 (413)
+|+.+.+..++++++++++||.+..+... .............. ..|.+...+. +..+......... -.
T Consensus 180 vdl~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~~~~~p-~~~~~~~~~~~~~---~~ 248 (495)
T 3dsk_A 180 ADFGGSSDGTAFNFLARAFYGTNPADTKLKADAPGLITKWVLFN-------LHPLLSIGLP-RVIEEPLIHTFSL---PP 248 (495)
T ss_dssp EESHHHHHHHHHHHHHHHHHSCCGGGSTTTTCHHHHHHHHHHHH-------HGGGCCCSSC-HHHHHHHHSSSCC---CG
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcchhhhhhhHHHHHHHHHHHh-------hhhHhHhccH-HHHHHHHHHhhcc---cc
Confidence 99999999999999999999987643211 11111111111110 0111100000 0001100000000 00
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHh-hcccccHHHHHHHHHHHHhh-ChH
Q 040489 256 PLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFL-NAGTDTTSTALQWIMANLVK-HPH 333 (413)
Q Consensus 256 ~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l-~AG~dTTa~tl~w~~~~La~-~P~ 333 (413)
..+++..... .+...+.++.+++.. ++..++++|+..+++.++ +||+|||+++++|++++|+. ||+
T Consensus 249 ~~~~~~~~~~---------~~~~~~~~~~ll~~~---~~~~l~~~ei~~~~~~~l~~ag~~tt~~~l~~~l~~L~~~~P~ 316 (495)
T 3dsk_A 249 ALVKSDYQRL---------YEFFLESAGEILVEA---DKLGISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQ 316 (495)
T ss_dssp GGGHHHHHHH---------HHHHHHHCHHHHHHH---HHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhhhhHHHH---------HHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCHH
Confidence 0001110000 000112334444432 234689999998766665 99999999999999999995 999
Q ss_pred HHHHHHHHHHhhhcCCCC----CCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeee
Q 040489 334 VQETVYTEIRGVVGENEE----GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYIN 409 (413)
Q Consensus 334 vq~Kl~eEi~~v~g~~~~----~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
+|+|+++|++++++.... +++.+||||+|||+|+||++||+|+..||+.+++.+... +.++..++++.|....++
T Consensus 317 ~~~~lr~Ei~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~a~~d~~l~~~-~~g~~IpkG~~v~~~~~~ 395 (495)
T 3dsk_A 317 VHNRLAEEIRSVIKSNGGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESH-DAAFKVKAGEMLYGYQPL 395 (495)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHTCHHHHHHHHHHHHHSCSSCEEEEEESSCEEEECS-SCEEEECTTCEEEEEHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhcCCCccccceeecCCeEeccC-CCceEECCCCEEEeccHH
Confidence 999999999999875422 778899999999999999999999999998888877643 358899999999887776
Q ss_pred eec
Q 040489 410 IVR 412 (413)
Q Consensus 410 ~~~ 412 (413)
+-|
T Consensus 396 ~~~ 398 (495)
T 3dsk_A 396 ATR 398 (495)
T ss_dssp HHT
T ss_pred hhC
Confidence 544
No 29
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=100.00 E-value=2.3e-37 Score=302.25 Aligned_cols=316 Identities=12% Similarity=0.027 Sum_probs=228.0
Q ss_pred CCcccccccchhhhhccCCchHHHHHHHhhcC-CeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCC--Ccccc
Q 040489 37 PFNLPVIGNLQWLLKSFSEIEPILRNLHSKLG-PVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLP--TSKIV 113 (413)
Q Consensus 37 P~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG-~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~--~~~~~ 113 (413)
|++.|++||+..+.. +++.++.+++++|| ||+++++++.+++++++|+.++.++ + ...|.++..... ...++
T Consensus 5 ~Pg~P~lG~~~~~~~---~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~ 79 (417)
T 1izo_A 5 IPHDKSLDNSLTLLK---EGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSLF 79 (417)
T ss_dssp -CBCCCTTHHHHHHH---HGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTTT
T ss_pred CCCCCccchHHHHhh---CcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhhc
Confidence 334489999998864 46789999999998 8999998888999999999998544 3 334544322110 11222
Q ss_pred cCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHHHHH
Q 040489 114 SSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCLLVL 193 (413)
Q Consensus 114 ~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~vi~~ 193 (413)
+. .++. ..+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|.. + .++|+.+.+..+++++|++
T Consensus 80 g~--~~l~-~~dg~~h~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~---~~~dl~~~~~~~~~~vi~~ 148 (417)
T 1izo_A 80 GV--NAIQ-GMDGSAHIHRKMLFL-SLMTPPHQKRLAELMTEEWKAAVTRWEK----A---DEVVLFEEAKEILCRVACY 148 (417)
T ss_dssp CT--TCGG-GCCHHHHHHHHHHHH-HTSSHHHHHHHHHHHHHHHHHHHHHHTT----S---SEEEHHHHHHHHHHHHHHH
T ss_pred cc--ccee-ecCChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHhc----C---CCeeHHHHHHHHHHHHHHH
Confidence 21 2343 457999999999765 8899999999999999999999988753 2 5799999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 040489 194 MCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIK 273 (413)
Q Consensus 194 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~ 273 (413)
+ ||.++++.....+...+..++..+. .+.| .+.+..+..+.+.+++.++|+++++... .
T Consensus 149 ~-~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~i~~r~~~~~-~----- 207 (417)
T 1izo_A 149 W-AGVPLKETEVKERADDFIDMVDAFG-----AVGP---------RHWKGRRARPRAEEWIEVMIEDARAGLL-K----- 207 (417)
T ss_dssp H-HTCCCCTTTHHHHHHHHHHHHHHTT-----CCSH---------HHHHHHHHHHHHHHHHHHHHHHHHTTSS-C-----
T ss_pred H-cCCCCCchHHHHHHHHHHHHHhhcc-----cCCc---------cchhHHHHHHHHHHHHHHHHHHHHhhcc-C-----
Confidence 8 6998865433333332222222111 0111 1223345566777888888888765321 0
Q ss_pred hhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCC
Q 040489 274 EREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGP 353 (413)
Q Consensus 274 ~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~ 353 (413)
....|+++.|++.... ++..++++++.+++..++ ||+|||+++++|++++|++||++|+|+++|
T Consensus 208 --~~~~d~l~~ll~~~~~-~g~~l~~~~~~~~~~~~~-ag~~tt~~~l~~~l~~L~~~P~~~~~l~~E------------ 271 (417)
T 1izo_A 208 --TTSGTALHEMAFHTQE-DGSQLDSRMAAIELINVL-RPIVAISYFLVFSALALHEHPKYKEWLRSG------------ 271 (417)
T ss_dssp --CCTTSHHHHHHHCBCT-TSCBCCHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHSTHHHHHHHTC------------
T ss_pred --CCcCCHHHHHHHhccc-cCCCCCHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhhCHHHHHHHHhc------------
Confidence 0113799999986532 344688888888777655 999999999999999999999999999987
Q ss_pred CCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 354 KYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 354 ~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++||++|||+|+||+|||++...+++.+++.+ .+...++++.|....+++-|
T Consensus 272 --~~~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l-----~g~~ip~G~~v~~~~~~~~r 323 (417)
T 1izo_A 272 --NSREREMFVQEVRRYYPFGPFLGALVKKDFVW-----NNCEFKKGTSVLLDLYGTNH 323 (417)
T ss_dssp --CHHHHHHHHHHHHHHSCCCCEEEEEECSCEEE-----TTEEECTTCEEEEEHHHHHT
T ss_pred --CCHHHHHHHHHHhhcCCcccccceeecCCeeE-----CCEEECCCCEEEecHHHhhc
Confidence 47999999999999999999844445445444 35778888888877766544
No 30
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=100.00 E-value=1.8e-37 Score=301.86 Aligned_cols=306 Identities=13% Similarity=0.116 Sum_probs=226.3
Q ss_pred CCCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEE----c-CC-ccEEEEeChHHHHHHH-HhcCcccccC
Q 040489 31 TNLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLF----I-GP-RPAIFIADRSLAHKAL-VQNGAIFADR 103 (413)
Q Consensus 31 ~~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~----~-g~-~~~v~i~dpe~i~~il-~~~~~~f~~r 103 (413)
.++||||+++|+. + ..+++..+.++ ++||||++++ + |+ .++++++||+++++|| .+. .|.++
T Consensus 9 ~~lppgp~~~p~~-----~---~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~ 77 (406)
T 1ued_A 9 APLLREPANFQLR-----T---NCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTR 77 (406)
T ss_dssp CCEEECCTTTTCE-----E---TTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECC
T ss_pred CCCcccCcccCCC-----C---CCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--ccccc
Confidence 4789999999976 2 23578889999 9999999999 6 78 8999999999999999 443 35444
Q ss_pred CCCCCCc-ccccC--CCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchH
Q 040489 104 PRPLPTS-KIVSS--NQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVL 180 (413)
Q Consensus 104 ~~~~~~~-~~~~~--~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~ 180 (413)
+...... .+... ...++. ..+|+.|+++||.+. +.|++..++.+.+.+++.++.+++.|... | .++|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~-~~~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g---~~~d~~ 149 (406)
T 1ued_A 78 PQFTQSKSGAHVEAQFVGQIS-TYDPPEHTRLRKMLT-PEFTVRRIRRMEPAIQSLIDDRLDLLEAE---G---PSADLQ 149 (406)
T ss_dssp CCC---------CGGGTTCGG-GCCTTHHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHH---C---TTEEHH
T ss_pred ccccccccccccccccccccc-cCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc---C---CCeeHH
Confidence 3211000 11100 112443 358999999999875 78999999999999999999999999741 2 579999
Q ss_pred HHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHH
Q 040489 181 DHFQY-AMFCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIR 259 (413)
Q Consensus 181 ~~~~~-~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 259 (413)
+.+.. +++++|+ .+||.+.++ ...+... ...+... . . ..++..+..+.+.+++.++++
T Consensus 150 ~~~~~~~~~~vi~-~~~G~~~~~--~~~~~~~----~~~~~~~---~-~----------~~~~~~~~~~~~~~~~~~~i~ 208 (406)
T 1ued_A 150 GLFADPVGAHALC-ELLGIPRDD--QREFVRR----IRRNADL---S-R----------GLKARAADSAAFNRYLDNLLA 208 (406)
T ss_dssp HHTHHHHHHHHHH-HHHTCCHHH--HHHHHHH----HHHCC-------C----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHH-HHcCCCHHH--HHHHHHH----HHHHHhc---c-C----------CHHHHHHHHHHHHHHHHHHHH
Confidence 88765 9999999 579986421 1122111 1111110 0 0 012344455667778888887
Q ss_pred HHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHH
Q 040489 260 ARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVY 339 (413)
Q Consensus 260 ~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~ 339 (413)
++++.. ..|+++.|++.. +..+|++++.+++.++++||+|||+++++|++++|++||++|+|++
T Consensus 209 ~r~~~~------------~~d~l~~ll~~~----~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~ 272 (406)
T 1ued_A 209 RQRADP------------DDGLLGMIVRDH----GDNVTDEELKGLCTALILGGVETVAGMIGFGVLALLDNPGQIELLF 272 (406)
T ss_dssp HHHHSC------------CSSHHHHHHHHH----GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTHHH
T ss_pred HHHhCC------------CCCHHHHHHHhc----CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 765321 127999998753 3458999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 340 TEIRGVVGENEEGPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 340 eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+|++ |++|||+|+||+|||+|+.++|.+. ++.+ .+.+.+++++|..+.+++-|
T Consensus 273 ~e~~---------------~l~a~i~E~lRl~p~~~~~~~R~~~~d~~~-----~G~~Ip~Gt~V~~~~~~~~r 326 (406)
T 1ued_A 273 ESPE---------------KAERVVNELVRYLSPVQAPNPRLAIKDVVI-----DGQLIKAGDYVLCSILMANR 326 (406)
T ss_dssp HCHH---------------HHHHHHHHHHHHHCSSCSCSCEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred hCHH---------------HHHHHHHHHHhcCCCcccCcceecCCCEEE-----CCEEECCCCEEEecHHHhcC
Confidence 9863 7999999999999999987777664 3333 57889999999988887765
No 31
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=100.00 E-value=1.7e-38 Score=307.50 Aligned_cols=298 Identities=16% Similarity=0.133 Sum_probs=214.1
Q ss_pred CCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCC-CCcccc
Q 040489 35 PGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPL-PTSKIV 113 (413)
Q Consensus 35 PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~-~~~~~~ 113 (413)
|++..+|++||++++.. +++.++.+++++||||++ ++|+.++++++||+.+++|+.++ .|.+++... ....++
T Consensus 2 ~~~~~~p~iGnl~~~~~---~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~ 75 (389)
T 1n97_A 2 KRLSLREAWPYLKDLQQ---DPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT 75 (389)
T ss_dssp EECCHHHHHHHHHHHHH---CHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH
T ss_pred cccccccccccHHHHhh---ChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh
Confidence 46778999999998853 468899999999999999 89999999999999999999765 676654111 111222
Q ss_pred cCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHHHHH
Q 040489 114 SSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCLLVL 193 (413)
Q Consensus 114 ~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~vi~~ 193 (413)
+ .++. ..+|+.|+++||.+. +.|+++.++.+.+.+.+.++.+++.|. + .++|+.+.+..+++|++++
T Consensus 76 g---~~l~-~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~-----~---~~~dl~~~~~~~~~~vi~~ 142 (389)
T 1n97_A 76 G---RGLL-TDWGESWKEARKALK-DPFLPKNVRGYREAMEEEARAFFGEWR-----G---EERDLDHEMLALSLRLLGR 142 (389)
T ss_dssp C---SSTT-TCCHHHHHHHHHHHC-GGGSHHHHHTTHHHHHHHHHHHHHTCC-----S---CCEEHHHHHHHHHHHHHHH
T ss_pred C---Cccc-cCCcHHHHHHHHHhC-cccCHHHHHHHHHHHHHHHHHHHHHcc-----C---CcCcHHHHHHHHHHHHHHH
Confidence 2 2343 357999999999875 889999999999999999998888765 2 5799999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 040489 194 MCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIK 273 (413)
Q Consensus 194 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~ 273 (413)
++||.++++ .+......+...... ....++ .++....+++..+..+.+.+++.++++
T Consensus 143 ~~fG~~~~~----~~~~~~~~~~~~~~~-~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~i~-------------- 199 (389)
T 1n97_A 143 ALFGKPLSP----SLAEHALKALDRIMA-QTRSPL----ALLDLAAEARFRKDRGALYREAEALIV-------------- 199 (389)
T ss_dssp HHHSSCCCH----HHHHHHHHHHHHHHH-HHHCGG----GGGCHHHHHHHHHHHHHHHHHHGGGTT--------------
T ss_pred HHcCCcchH----HHHHHHHHHHHHHHH-HHhhHH----HhcCCchhHHHHHHHHHHHHHHHHHHH--------------
Confidence 999999873 222222222211110 011111 111111122222111111111110000
Q ss_pred hhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCC
Q 040489 274 EREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGP 353 (413)
Q Consensus 274 ~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~ 353 (413)
+ . ++ ..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|++++.
T Consensus 200 --~---r----ll--------~~l~~~~l~~~~~~~~~aG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E~~~~~------- 255 (389)
T 1n97_A 200 --H---P----PL--------SHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAAL------- 255 (389)
T ss_dssp --S---T----TG--------GGSCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH-------
T ss_pred --H---H----hc--------ccCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-------
Confidence 0 0 22 2378999999999999999999999999999999999999999999998764
Q ss_pred CCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 354 KYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 354 ~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|||+|+||+|||+|.. +|.+. ++.+ .+...++++.|..+.+++-|
T Consensus 256 --------a~i~E~lRl~p~~~~~-~R~~~~d~~l-----~g~~Ip~Gt~V~~~~~~~~r 301 (389)
T 1n97_A 256 --------AAFQEALRLYPPAWIL-TRRLERPLLL-----GEDRLPPGTTLVLSPYVTQR 301 (389)
T ss_dssp --------HHHHHHHHHSCSSCCE-EEEESSCEEE-----TTEEECTTCEEEECHHHHHH
T ss_pred --------HHHHHHHhcCCCcccc-ceeeCCCceE-----CCEEeCCCCEEEECHHHHhh
Confidence 9999999999999986 66554 3333 46888999999888777644
No 32
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=100.00 E-value=2e-37 Score=303.75 Aligned_cols=325 Identities=10% Similarity=0.072 Sum_probs=229.8
Q ss_pred CCCCCCCcccccccchhhhhc-c-CCchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccccCCC-CC
Q 040489 32 NLPPGPFNLPVIGNLQWLLKS-F-SEIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFADRPR-PL 107 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~-~-~~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~~r~~-~~ 107 (413)
++||| ++|++.+.... . .+++..+.++.+ ||||+++++ |+.+++++++++.++++|.+. ..|.+++. ..
T Consensus 6 ~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~~~~ 78 (428)
T 1cpt_A 6 TIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEGSEI 78 (428)
T ss_dssp CSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSSCSS
T ss_pred ccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCcccccc
Confidence 67788 78987654311 1 246788888865 799999987 678999999999999999654 46877754 21
Q ss_pred CC---c-c-c---ccC---CCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 040489 108 PT---S-K-I---VSS---NQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVP 176 (413)
Q Consensus 108 ~~---~-~-~---~~~---~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (413)
.. . . + ++. ...++. ..+|+.|+++||.+. +.|+++.++.+.+.+++.++.+++.|... + .+
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~~~~l~-~~~g~~~~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~---~~ 150 (428)
T 1cpt_A 79 LYDQNNEAFMRSISGGCPHVIDSLT-SMDPPTHTAYRGLTL-NWFQPASIRKLEENIRRIAQASVQRLLDF---D---GE 150 (428)
T ss_dssp CCCHHHHHHHHHHTTTSSCSSCCGG-GCCTTHHHHHHHHHH-TTSSHHHHGGGHHHHHHHHHHHHHHHHTS---S---SE
T ss_pred CCcccccchhccccccccccccccc-cCChHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHHh---C---CC
Confidence 11 1 1 2 321 112443 357999999999875 88999999999999999999999998752 2 46
Q ss_pred cchHHH-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHH
Q 040489 177 VRVLDH-FQYAMFCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLV 255 (413)
Q Consensus 177 vd~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~ 255 (413)
+|+.+. ...+++++|+.+ ||.+.++. ..+......+.... ......+|++... ....+++..+..+.+.+++.
T Consensus 151 ~d~~~~~~~~~~~~vi~~~-fG~~~~~~--~~~~~~~~~~~~~~--~~~~~~~P~l~~~-~~~~~~~~~~~~~~~~~~~~ 224 (428)
T 1cpt_A 151 CDFMTDCALYYPLHVVMTA-LGVPEDDE--PLMLKLTQDFFGVH--EPDEQAVAAPRQS-ADEAARRFHETIATFYDYFN 224 (428)
T ss_dssp EEHHHHTTTTHHHHHHHHH-HTCCGGGH--HHHHHHHHTTTCC-------------------CHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHhhhHHHHHHHH-cCCCHhHH--HHHHHHHHHHHhcc--ccccccccccccc-chhhHHHHHHHHHHHHHHHH
Confidence 898755 467999999999 99976432 22222211111000 0111223433211 01222444555667777888
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHH
Q 040489 256 PLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQ 335 (413)
Q Consensus 256 ~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq 335 (413)
++++++++. . ..|+++.|++... ++..+|++++.+++.++++||+|||+++++|++++|++||++|
T Consensus 225 ~~i~~r~~~----~--------~~dll~~ll~~~~--~~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~ 290 (428)
T 1cpt_A 225 GFTVDRRSC----P--------KDDVMSLLANSKL--DGNYIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNPEQL 290 (428)
T ss_dssp HHHHHHTTS----C--------CSSHHHHHHHCBS--SSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcC----C--------CCcHHHHHHhccc--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 888776431 1 1289999998653 3446999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 336 ETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 336 ~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+|+++|++ |++|||+|+||+|||++. ++|.+. ++.+ .+.+.+++++|..+.+++-|
T Consensus 291 ~~l~~E~~---------------~l~a~i~E~lRl~p~~~~-~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 347 (428)
T 1cpt_A 291 ALAKSDPA---------------LIPRLVDEAVRWTAPVKS-FMRTALADTEV-----RGQNIKRGDRIMLSYPSANR 347 (428)
T ss_dssp HHHHHCGG---------------GHHHHHHHHHHHHCCBCC-CEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HHHHHhHH---------------HHHHHHHHHHHhCCcccc-cceeeCCCeeE-----CCEEECCCCEEEeCHHHhCC
Confidence 99999963 899999999999999996 677654 3433 56889999999988887765
No 33
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=100.00 E-value=1.8e-36 Score=295.72 Aligned_cols=315 Identities=9% Similarity=-0.006 Sum_probs=226.6
Q ss_pred CCCCCcccccccchhhhhccCCchHHHHHHHhhc-CCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCC--CCc
Q 040489 34 PPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKL-GPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPL--PTS 110 (413)
Q Consensus 34 ~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~ky-G~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~--~~~ 110 (413)
|||| |++||++.+.. +++.++.+++++| |||+++.+++.+++++++|+.++ ++.+. +.|.+++... ...
T Consensus 4 pPg~---P~iG~~~~~~~---~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~ 75 (415)
T 3awm_A 4 TPHT---KGPDETLSLLA---DPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQK 75 (415)
T ss_dssp --------CCCCHHHHHH---STTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHT
T ss_pred CCCC---CccchHHHHHh---ChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhh
Confidence 5666 89999998864 4678999999999 79999998888899999999986 66543 4565443211 011
Q ss_pred ccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHH
Q 040489 111 KIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCL 190 (413)
Q Consensus 111 ~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~v 190 (413)
.+++ ..++. ..+|+.|+++||.+ .+.|+++.++.+.+.+.+.++.+++.|... .++|+.+.+..+++++
T Consensus 76 ~~~g--~~~l~-~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~-------~~vdl~~~~~~~~~~v 144 (415)
T 3awm_A 76 TLLG--QGGVQ-GLDGETHRHRKQMF-MGLMTPERVRALAQLFEAEWRRAVPGWTRK-------GEIVFYDELHEPLTRA 144 (415)
T ss_dssp TTSC--SSSGG-GCCHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-------SEEEHHHHHHHHHHHH
T ss_pred hccC--Cccee-ecCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhccC-------CcEeHHHHHHHHHHHH
Confidence 1222 12343 45899999999976 488999999999999999999999988642 4799999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 040489 191 LVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESL 270 (413)
Q Consensus 191 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~ 270 (413)
|+++ ||.+.++.....+...+......+ +.+ ...+.+..++.+.+.+++.++++++++... .
T Consensus 145 i~~~-~G~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~-~-- 206 (415)
T 3awm_A 145 VCAW-AGVPLPDDEAGNRAGELRALFDAA---------GSA-----SPRHLWSRLARRRVDAWAKRIIEGIRAGSI-G-- 206 (415)
T ss_dssp HHHH-HTCCCCGGGHHHHHHHHHHHHHST---------TCS-----SHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-C--
T ss_pred HHHH-cCCCCCcchHHHHHHHHHHHHHHh---------ccc-----CchHHHHHHHHHHHHHHHHHHHHHHHHhhh-c--
Confidence 9998 899886543333322222222111 111 011233445566777888888887765321 0
Q ss_pred hhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCC
Q 040489 271 SIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENE 350 (413)
Q Consensus 271 ~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~ 350 (413)
....|+++.|++.... ++..++++++.+++..++ ||+|||+++++|++++|++||++|+|+++|
T Consensus 207 -----~~~~d~l~~ll~~~~~-~g~~~~~~~~~~~~~~~~-ag~~tt~~~l~~~l~~L~~~P~~~~~l~~e--------- 270 (415)
T 3awm_A 207 -----SGSGTAAYAIAWHRDR-HDDLLSPHVAAVELVNVL-RPTVAIAVYITFVAHALQTCSGIRAALVQQ--------- 270 (415)
T ss_dssp -----CCTTSHHHHHHHCBCT-TSCBCCHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHSTTHHHHHHHC---------
T ss_pred -----CCCCCHHHHHHhhhhc-cCCCCCHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhChHHHHHHHHH---------
Confidence 0112799999976432 344689998888877665 999999999999999999999999999986
Q ss_pred CCCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 351 EGPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 351 ~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||++|||+|+||+|||++...+++..++.+ .+...++++.|....+++-|
T Consensus 271 ------~~~l~a~i~E~lRl~p~~~~~~R~~~~d~~l-----~G~~ip~G~~V~~~~~~~~r 321 (415)
T 3awm_A 271 ------PDYAELFVQEVRRFYPFFPAVVARASQDFEW-----EGMAFPEGRQVVLDLYGSNH 321 (415)
T ss_dssp ------TTHHHHHHHHHHHHSCCSCEEEEEESSCEEE-----TTEEECTTCEEEEEHHHHHT
T ss_pred ------HHHHHHHHHHHhhcCCCccccceeecCCeEE-----CCEEECCCCEEEeCchhhcC
Confidence 6899999999999999999844444444444 46788888888877776654
No 34
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=100.00 E-value=2.2e-38 Score=314.51 Aligned_cols=341 Identities=13% Similarity=0.103 Sum_probs=215.3
Q ss_pred CCCCCCCCCc-ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCC-
Q 040489 30 KTNLPPGPFN-LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPL- 107 (413)
Q Consensus 30 ~~~~~PgP~~-~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~- 107 (413)
..+.||||++ +|++||++++.. +++.++.+++++|||||++++|+.++++++||+++++++.++.. |..+....
T Consensus 16 ~~~~pPgp~~~~P~iG~~~~~~~---~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~ 91 (475)
T 3b98_A 16 RRNEPPLDKGMIPWLGHALEFGK---DAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQV 91 (475)
T ss_dssp CTTCCCEECCSSTTTBTHHHHHH---CHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHH
T ss_pred CCCCCCCCCCCcchHHhHHHHhh---CHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHH
Confidence 3478999998 999999998853 47889999999999999999999999999999999999965432 32221110
Q ss_pred CCcccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHH
Q 040489 108 PTSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAM 187 (413)
Q Consensus 108 ~~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~ 187 (413)
.....++. ++. ..+|+.|| |.+ .+.|++..++.+.+.+.+.++.+++.+.... .+.....+++.+.+..++
T Consensus 92 ~~~~~~g~---~~~-~~~~~~~R---~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 162 (475)
T 3b98_A 92 LMKRIFNM---ILP-SHNPESEK---KRA-EMHFQGASLTQLSNSMQNNLRLLMTPSEMGL-KTSEWKKDGLFNLCYSLL 162 (475)
T ss_dssp HHHHTTCC---CCT-TCCHHHHH---HHH-HHHTSHHHHHHHHHHHHHHHHHHSSTTTTTC-SSCSCEEEEHHHHHHHHH
T ss_pred HHHHHhCC---CCC-CCChHHHH---HHH-HHHcChhhHHHHHHHHHHHHHHHHhhccccc-CCCCceeehHHHHHHHHH
Confidence 01122221 222 24577664 333 3678999999998887777766665443211 011113467777788888
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchh-hchhHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Q 040489 188 FCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKI-VFVKKWEQFLQMRRDQENVLVPLI-RARKKMK 265 (413)
Q Consensus 188 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-~~~~~~~~~~~~~~~~~~~i~~~i-~~r~~~~ 265 (413)
+++++...||.+-.+ ...+......+.. +.+.+|++... +....+++..+..+.+ .+.+ +++.+
T Consensus 163 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~~------~~~~~p~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-- 228 (475)
T 3b98_A 163 FKTGYLTVFGAENNN--SAALTQIYEEFRR------FDKLLPKLARTTVNKEEKQIASAAREKL----WKWLTPSGLD-- 228 (475)
T ss_dssp HHHHHHHHHCCTTSC--HHHHHHHHHHHHH------HHHHHHHHHTTCCCHHHHHHHHHHHHHH----HHHHSCTTSC--
T ss_pred HHHhhhheeCCcccc--chhcHHHHHHHHH------HHhhhHHHHHHhcChhhhHHHHHHHHHH----HHHHHHHHhh--
Confidence 888888889865322 1111111111111 01223332111 1111122222222211 1111 11110
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhh
Q 040489 266 EEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGV 345 (413)
Q Consensus 266 ~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v 345 (413)
. .+...|+++.+++... +++.++++++. +++++++||+|||+++++|++++|++||++|+|+++|++
T Consensus 229 --~------~~~~~d~l~~ll~~~~--~~~~~~~~~i~-~~~~~l~ag~~TTa~~l~~~l~~L~~~P~~~~~l~~Ei~-- 295 (475)
T 3b98_A 229 --R------KPREQSWLGSYVKQLQ--DEGIDAEMQRR-AMLLQLWVTQGNAGPAAFWVMGYLLTHPEALRAVREEIQ-- 295 (475)
T ss_dssp --C------CCCTTSHHHHHHHHHH--HTTCCHHHHHH-HHHHHHHHHHSSHHHHHHHHHHHHHTCHHHHHHHHHHHC--
T ss_pred --c------cccccHHHHHHHHHHH--HcCCCHHHHHH-HHHHHHHHccccHHHHHHHHHHHHHcCHHHHHHHHHHHh--
Confidence 0 0112389999987542 23358888888 999999999999999999999999999999999999998
Q ss_pred hcCCC-C-CCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeee-eec
Q 040489 346 VGENE-E-GPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYIN-IVR 412 (413)
Q Consensus 346 ~g~~~-~-~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 412 (413)
.|... . +++.+||||+|||+|+||+||+ +. ++|.+. ++.++.....+.+.+++++|..+.++ +-|
T Consensus 296 ~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~-~~-~~R~~~~d~~l~~~~g~g~~Ip~Gt~V~~~~~~~~~r 364 (475)
T 3b98_A 296 GGKHLRLEERQKNTPVFDSVLWETLRLTAA-AL-ITRDVTQDKKICLSNGQEYHLRRGDRLCVFPFISPQM 364 (475)
T ss_dssp ------------CCHHHHHHHHHHHHHHEE-EC-EEEEECSCEEEECTTSCEEEECTTCEEEECTCCCCCT
T ss_pred cCCCCCCHHHHhcCHHHHHHHHHHHhcCCc-cc-eeEEecCCeEeecCCCCeEEECCCCEEEeCcHHHhcC
Confidence 23222 2 8899999999999999999987 65 566554 44443211156899999999998888 765
No 35
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=100.00 E-value=5.3e-38 Score=311.56 Aligned_cols=350 Identities=14% Similarity=0.093 Sum_probs=228.1
Q ss_pred CCCCCCCcccccccchhhhhc--cC-CchHHHHHHHhhcCC-eEEEEcCCcc-------EEEEeChHHHHHHHHh----c
Q 040489 32 NLPPGPFNLPVIGNLQWLLKS--FS-EIEPILRNLHSKLGP-VVTLFIGPRP-------AIFIADRSLAHKALVQ----N 96 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~--~~-~~~~~~~~~~~kyG~-i~~~~~g~~~-------~v~i~dpe~i~~il~~----~ 96 (413)
+.||||+|||++|+++++... .. +++.++.++++|||+ ||++++++.+ .|+++++...+.++.. +
T Consensus 9 ~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~ 88 (473)
T 3dan_A 9 REIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKVEK 88 (473)
T ss_dssp CCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTEEC
T ss_pred CCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcceec
Confidence 568999999999999987532 34 678899999999999 9999986443 3444555443333310 1
Q ss_pred CcccccCCCCCCCcccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 040489 97 GAIFADRPRPLPTSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVP 176 (413)
Q Consensus 97 ~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (413)
...+.+.... ...+++..........+|+.|+++||.+. +.|++ .++.+.+.+++.++.+++.|......+ .+
T Consensus 89 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~h~~~R~~~~-~~f~~-~~~~~~~~i~~~~~~ll~~~~~~~~~~---~~ 161 (473)
T 3dan_A 89 KDLFTGTYMP--STKLTGGYRVLSYLDPSEPRHAQLKNLLF-FMLKN-SSNRVIPQFETTYTELFEGLEAELAKN---GK 161 (473)
T ss_dssp SSCTTSSSCC--CGGGGTTSCCGGGCCTTSHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred cccccccccC--CccccCCCcceeeeCCCcHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccC---Cc
Confidence 1112111111 11233321112223457999999999875 77888 489999999999999999997643322 57
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHH
Q 040489 177 VRVLDHFQYAMFCLLVLMCFGDKLDESQIK-KIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLV 255 (413)
Q Consensus 177 vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~ 255 (413)
+|+.+.+..+++++++.++||.+.+..... .......... .. ...|.+...+. ...+........ ...
T Consensus 162 vdl~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~~~~~~~~~-~~------~~~p~~~~~lp-~~~~~~~~~~~~---~~~ 230 (473)
T 3dan_A 162 AAFNDVGEQAAFRFLGRAYFNSNPEETKLGTSAPTLISSWV-LF------NLAPTLDLGLP-WFLQEPLLHTFR---LPA 230 (473)
T ss_dssp EECHHHHHHHHHHHHHHHHHSCCGGGSTTTTCHHHHHHHHH-HH------HHGGGCCCSCC-HHHHHHHHSSSC---CCG
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHHHH-HH------hccchhhhcch-HHHHHHHhhhcc---chH
Confidence 999999999999999999999987542111 1111111111 00 11122110000 000000000000 000
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHh-hcccccHHHHHHHHHHHHhh-ChH
Q 040489 256 PLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFL-NAGTDTTSTALQWIMANLVK-HPH 333 (413)
Q Consensus 256 ~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l-~AG~dTTa~tl~w~~~~La~-~P~ 333 (413)
..+++..+.. .+...++++.+++.. ++..++++++.++++.++ +||+|||+++++|++++|++ ||+
T Consensus 231 ~~~~~~~~~~---------~~~~~~~~~~ll~~~---~~~~l~~~ei~~~~l~~~g~~~~~tta~~l~~~l~~L~~~~P~ 298 (473)
T 3dan_A 231 FLIKSTYNKL---------YDYFQSVATPVMEQA---EKLGVPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGEN 298 (473)
T ss_dssp GGTHHHHHHH---------HHHHHHHCHHHHHHH---HHHTCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhhhchhhh---------HHHHHHHHHHHHHhH---hhcCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCHH
Confidence 0001110000 011124555566532 235699999999887776 88899999999999999999 899
Q ss_pred HHHHHHHHHHhhhcC-CC--C--CCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeee
Q 040489 334 VQETVYTEIRGVVGE-NE--E--GPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYI 408 (413)
Q Consensus 334 vq~Kl~eEi~~v~g~-~~--~--~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
+|+|+++|++++++. .. . +++.+||||+|||+|+||++||+|...||+..++.++.. +.+...++++.|....+
T Consensus 299 ~~~~lr~Ei~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~d~~l~~~-~~g~~Ip~G~~v~~~~~ 377 (473)
T 3dan_A 299 LHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIESH-DATFEVKKGEMLFGYQP 377 (473)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHTCHHHHHHHHHHHHHSCSSCEEEEEESSCEEEECS-SCEEEECTTCEEEEEHH
T ss_pred HHHHHHHHHHHHhhcccCCCCCHHHHhcCchHHHHHHHHHhcCCCcccccccccCCcEeecC-CCceEeCCCCEEEechH
Confidence 999999999999876 32 1 778899999999999999999999999998888777543 26788899999888777
Q ss_pred eeec
Q 040489 409 NIVR 412 (413)
Q Consensus 409 ~~~~ 412 (413)
++-|
T Consensus 378 ~~~~ 381 (473)
T 3dan_A 378 FATK 381 (473)
T ss_dssp HHTT
T ss_pred HhhC
Confidence 6654
No 36
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=100.00 E-value=4.9e-36 Score=292.35 Aligned_cols=311 Identities=15% Similarity=0.121 Sum_probs=226.5
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhc-CCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccccCCCCCCC
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKL-GPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFADRPRPLPT 109 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~ky-G~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~ 109 (413)
..+|||+++|.+..-..+ ..+++..+.++ ++| |||+++++ |+.++++++||+++++||.++ .|.+++.....
T Consensus 5 ~~~~~~~~~P~~~~~~~~---~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~ 78 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSC---PYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNRTDDNF 78 (412)
T ss_dssp ---CCCCSSCBSSCCCSS---TTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCTTSTTS
T ss_pred CCCCCCCCCCCCCCCchh---ccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCcccccc
Confidence 457888888866222222 23578899999 888 99999997 888999999999999999754 34444321111
Q ss_pred ccc------ccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH
Q 040489 110 SKI------VSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF 183 (413)
Q Consensus 110 ~~~------~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~ 183 (413)
... +.....++. ..+|+.|+++||.+. +.|++..++.+.+.+++.++.+++.|... | .++|+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~l~-~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g---~~~d~~~~~ 150 (412)
T 2zbx_A 79 PATSPRFEAVRESPQAFI-GLDPPEHGTRRRMTI-SEFTVKRIKGMRPEVEEVVHGFLDEMLAA---G---PTADLVSQF 150 (412)
T ss_dssp CCCSGGGC----CCCCGG-GCCTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHH---C---SCEEHHHHT
T ss_pred cccccccccccccccccc-cCCcHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc---C---CCccHHHHH
Confidence 111 000112343 358999999999865 78999999999999999999999999742 2 579998887
Q ss_pred H-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040489 184 Q-YAMFCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARK 262 (413)
Q Consensus 184 ~-~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~ 262 (413)
. .+++++|+. +||.+.++. ..+......++. . .+ . ++..+..+.+.+++.+++++++
T Consensus 151 ~~~~~~~vi~~-~~G~~~~~~--~~~~~~~~~~~~----~-----~~--------~--~~~~~~~~~~~~~~~~~i~~r~ 208 (412)
T 2zbx_A 151 ALPVPSMVICR-LLGVPYADH--EFFQDASKRLVQ----S-----TD--------A--QSALTARNDLAGYLDGLITQFQ 208 (412)
T ss_dssp TTHHHHHHHHH-HHTCCGGGH--HHHHHHHHHHHH----C-----SS--------H--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCCHHHH--HHHHHHHHHHhc----c-----Cc--------H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 6 588999997 799876431 222222211111 0 00 1 2334455566777888887765
Q ss_pred HhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHH
Q 040489 263 KMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEI 342 (413)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi 342 (413)
+.. + .|+++.|++... ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+
T Consensus 209 ~~~---------~---~d~l~~ll~~~~--~~~~ls~~ei~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e~ 274 (412)
T 2zbx_A 209 TEP---------G---AGLVGALVADQL--ANGEIDREELISTAMLLLIAGHETTASMTSLSVITLLDHPEQYAALRADR 274 (412)
T ss_dssp HSC---------C---SSHHHHHHHTTT--TTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCG
T ss_pred hCC---------C---CCHHHHHHHhcc--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHhCh
Confidence 321 1 279999998653 34569999999999999999999999999999999999999999999975
Q ss_pred HhhhcCCCCCCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 343 RGVVGENEEGPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 343 ~~v~g~~~~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.|++|||+|+||+|||+|+.++|.+. ++.+ .+...+++++|..+.+++-|
T Consensus 275 ---------------~~l~a~i~E~lRl~p~~~~~~~R~~~~d~~~-----~G~~Ip~Gt~V~~~~~~~~r 325 (412)
T 2zbx_A 275 ---------------SLVPGAVEELLRYLAIADIAGGRVATADIEV-----EGQLIRAGEGVIVVNSIANR 325 (412)
T ss_dssp ---------------GGHHHHHHHHHHHHCCCGGGCEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred ---------------HhHHHHHHHHHHhCCccccccceeeCCCeEE-----CCEEECCCCEEEeChhhhcC
Confidence 28999999999999999977787664 3333 47888999999988887765
No 37
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=100.00 E-value=1e-35 Score=287.46 Aligned_cols=291 Identities=14% Similarity=0.117 Sum_probs=217.7
Q ss_pred CCchHHHHHHHhhcCCeEEEEcCC----ccEEEEeChHHHHHHHHhcCcccccCCCCCCCcccccCCCcceEeccCChhH
Q 040489 54 SEIEPILRNLHSKLGPVVTLFIGP----RPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVSSNQHNISSASYGTTW 129 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~g~----~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w 129 (413)
.+++.++.++ ++||||+++++|+ .++++++||+++++|+. +...|.+++..... ........++ +..+|+.|
T Consensus 12 ~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl~-~~~~f~~~~~~~~~-~~~~~~~~~~-~~~~g~~~ 87 (384)
T 3oo3_A 12 LDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAILA-DHERFSSMRPVDDE-ADRALLPGIL-QAYDPPDH 87 (384)
T ss_dssp TEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHHH-CTTTEECSCCCC------CCCTTCG-GGCCTTHH
T ss_pred cChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHHh-CchhccCCcccccc-cccccccccc-ccCCChhH
Confidence 4678889999 5999999988876 89999999999999994 45678777543211 1111112233 34589999
Q ss_pred HHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 040489 130 RLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCLLVLMCFGDKLDESQIKKIE 209 (413)
Q Consensus 130 ~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~ 209 (413)
+++||.+. +.|+++.++.+.+.+.+.++.+++.|... + .++|+.+.+...+.+++...+||.+.++. ..+.
T Consensus 88 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~---~~~d~~~~~~~~~~~~v~~~~~G~~~~~~--~~~~ 158 (384)
T 3oo3_A 88 TRLRRTVA-PAYSARRMERLRPRIEEIVEECLDDFESV---G---APVDFVRHAAWPIPAYIACEFLGVPRDDQ--AELS 158 (384)
T ss_dssp HHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHS---C---SSEEHHHHTTTHHHHHHHHHHHTCCGGGH--HHHH
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc---C---CCccHHHHHHHHHHHHHHHHHcCCCHHHH--HHHH
Confidence 99999875 89999999999999999999999998652 3 57999999888777777777899876432 2222
Q ss_pred HHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhcc
Q 040489 210 NVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQ 289 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~ 289 (413)
........ .+ ..++..+..+.+.+++.++++++++.. ..|+++.+++.
T Consensus 159 ~~~~~~~~----------~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~d~l~~ll~~- 206 (384)
T 3oo3_A 159 RMIRESRE----------SR---------LPRQRTLSGLGIVNYTKRLTSGKRRDP------------GDGMIGVIVRE- 206 (384)
T ss_dssp HHHHHHHH----------CS---------CHHHHHHHHHHHHHHHHHHHHHHHHSC------------CSSHHHHHHHH-
T ss_pred HHHHHHhc----------cC---------ChHHHHHHHHHHHHHHHHHHHHHHhCC------------CCCHHHHHHHh-
Confidence 22222111 00 123334455667777888887664321 12799999975
Q ss_pred CCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhcccc
Q 040489 290 LPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLR 369 (413)
Q Consensus 290 ~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlR 369 (413)
++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++. ++|||+|+||
T Consensus 207 ---~~~~l~~~~l~~~~~~~~~AG~~Tta~~l~~~l~~L~~~P~~~~~l~~E~~~---------------l~a~i~E~lR 268 (384)
T 3oo3_A 207 ---HGAEISDEELAGLAEGNLIMAAEQMAAQLAVAVLLLVTHPDQMALLREKPEL---------------IDSATEEVLR 268 (384)
T ss_dssp ---HGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHCGGG---------------HHHHHHHHHH
T ss_pred ---cCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHCHHHHHHHHhCHHH---------------HHHHHHHHHH
Confidence 2346999999999999999999999999999999999999999999999864 8999999999
Q ss_pred ccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 370 IHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 370 l~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+|||+|..++|.+. ++.+ .+.+.++++.|..+.+++-|
T Consensus 269 l~p~~~~~~~R~~~~d~~~-----~g~~Ip~Gt~V~~~~~~~~r 307 (384)
T 3oo3_A 269 HASIVEAPAPRVALADVRM-----AGRDIHAGDVLTCSMLATNR 307 (384)
T ss_dssp HHCSCSCCSCEEESSCEEE-----TTEEECTTCEEEECHHHHHC
T ss_pred hCCcccCCcceeeCCCEEE-----CCEEECCCCEEEEehhhcCC
Confidence 99999988888665 3333 57889999999888776543
No 38
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=100.00 E-value=2.7e-36 Score=294.08 Aligned_cols=315 Identities=14% Similarity=0.092 Sum_probs=218.8
Q ss_pred HHHHHhhhhhcCCCCCCCCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHH
Q 040489 15 ALLKAFISVIISPKYKTNLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALV 94 (413)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~ 94 (413)
++...+|-+++++.. .+|||+. + .+++.++.++++ |||| ++++.+.++++||+.+++++.
T Consensus 5 ~~~~~iyr~~~~pl~---~~PGp~~----~---------~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~ 64 (411)
T 2jjn_A 5 VETTCCARRTLTTID---EVPGMAD----E---------TALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLR 64 (411)
T ss_dssp ------------CCC---SCCCSSC----H---------HHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHH
T ss_pred hHhHHhhhcccCCCC---CCCCccc----c---------cChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHc
Confidence 344456666776664 4778772 1 135778888865 9998 567778999999999999997
Q ss_pred hcCcccccCCCCCCCcccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 040489 95 QNGAIFADRPRPLPTSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRP 174 (413)
Q Consensus 95 ~~~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (413)
+. ..|.+++... .... ...+.++. ..+|+.|+++||.+. +.|++..++.+.+.+++.++.+++. . +
T Consensus 65 ~~-~~f~~~~~~~-~~~~-~~~~~~~~-~~~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~-----~-~--- 130 (411)
T 2jjn_A 65 DT-ATFSSDPTRV-IEGA-SPTPGMIH-EIDPPEHRALRKVVS-SAFTPRTISDLEPRIRDVTRSLLAD-----A-G--- 130 (411)
T ss_dssp CT-TTEESCGGGG-STTC-CCCTTCGG-GCCTTHHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHT-----S-C---
T ss_pred Cc-ccccCccccc-CCcc-cccccccc-cCCchHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHhc-----C-C---
Confidence 64 4677665321 1111 11123443 357999999999875 7899999999999999988888876 1 2
Q ss_pred cccchHHH-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHH
Q 040489 175 VPVRVLDH-FQYAMFCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENV 253 (413)
Q Consensus 175 ~~vd~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 253 (413)
.++|+.+. ...+++|+|+.+ ||.+.++.. .+......+.... .|.+. ....+++..+..+.+.++
T Consensus 131 ~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~~--~~~~~~~~~~~~~--------~~~~~---~p~~~~~~~~~~~~~~~~ 196 (411)
T 2jjn_A 131 ESFDLVDVLAFPLPVTIVAEL-LGLPPMDHE--QFGDWSGALVDIQ--------MDDPT---DPALAERIADVLNPLTAY 196 (411)
T ss_dssp SEEEHHHHTTTHHHHHHHHHH-HTCCSCCCS--TTCCHHHHHHHSC--------CSCTT---CHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHH-cCCCHHHHH--HHHHHHHHHHhcc--------Ccccc---chHHHHHHHHHHHHHHHH
Confidence 47998855 468999999998 998874311 1111111121111 11110 012234455566677778
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChH
Q 040489 254 LVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPH 333 (413)
Q Consensus 254 i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~ 333 (413)
+.++++++++.. ..|+++.|++... ++..+|++++.+++.++++||+|||+++++|++++|++||+
T Consensus 197 ~~~~i~~r~~~~------------~~d~l~~ll~~~~--~~~~l~~~el~~~~~~~~~AG~eTt~~~l~~~l~~L~~~P~ 262 (411)
T 2jjn_A 197 LKARCAERRADP------------GDDLISRLVLAEV--DGRALDDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHPA 262 (411)
T ss_dssp HHHHHHHHHHSC------------CSSHHHHHHHCCB--TTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred HHHHHHHHHhCC------------CCCHHHHHHhccc--CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHH
Confidence 888887765411 1279999998642 34569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 334 VQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 334 vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+|+|+++|++ |++|||+|+||+|||+|. ++|.+. ++.+ .+...++++.|..+.+++-|
T Consensus 263 ~~~~l~~E~~---------------~l~a~i~E~lRl~p~~~~-~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 321 (411)
T 2jjn_A 263 HWDAAAEDPG---------------RIPAIVEEVLRYRPPFPQ-MQRTTTKATEV-----AGVPIPADVMVNTWVLSANR 321 (411)
T ss_dssp HHHHHHHCGG---------------GHHHHHHHHHHHSCSSCE-EEEEESSCEEE-----TTEEECSSCEEEEEHHHHHT
T ss_pred HHHHHHhCHH---------------hHHHHHHHHhhhCCCcCC-cceEECCCeEE-----CCEEECCCCEEEechhhhCC
Confidence 9999999963 999999999999999996 677654 4443 46888999999888877655
No 39
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=100.00 E-value=5.6e-36 Score=292.02 Aligned_cols=309 Identities=14% Similarity=0.125 Sum_probs=226.4
Q ss_pred CCCCCCCCccccc--ccchhhhhc--cCCchHHHHHHHhhcC--CeEEEE-cCCccEEEEeChHHHHHHHHhcCcccccC
Q 040489 31 TNLPPGPFNLPVI--GNLQWLLKS--FSEIEPILRNLHSKLG--PVVTLF-IGPRPAIFIADRSLAHKALVQNGAIFADR 103 (413)
Q Consensus 31 ~~~~PgP~~~pl~--G~l~~~~~~--~~~~~~~~~~~~~kyG--~i~~~~-~g~~~~v~i~dpe~i~~il~~~~~~f~~r 103 (413)
.++||||++.|.. +.+-.+... ..+++.++.+|+ +|| ||++++ +| ++++++|++.+++||.+ ...|.++
T Consensus 10 ~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~~f~~~ 85 (415)
T 2zwu_A 10 ANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YRHFSSE 85 (415)
T ss_dssp -CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TTTEETT
T ss_pred cccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-ccccCCC
Confidence 4799999999864 543211111 235788898884 899 999988 55 58999999999999964 4567776
Q ss_pred CCCCCCc-ccccCCCcc-eEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHH
Q 040489 104 PRPLPTS-KIVSSNQHN-ISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLD 181 (413)
Q Consensus 104 ~~~~~~~-~~~~~~~~~-i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~ 181 (413)
+...... ..+ +.+ +. ..+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|... .++|+.+
T Consensus 86 ~~~~~~~~~~~---~~~~l~-~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~-------~~~d~~~ 153 (415)
T 2zwu_A 86 CPFIPREAGEA---YDFIPT-SMDPPEQRQFRALAN-QVVGMPVVDKLENRIQELACSLIESLRPQ-------GQCNFTE 153 (415)
T ss_dssp SCSSSHHHHHH---CCCTTT-TCCTTTTHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHGGG-------TEEEHHH
T ss_pred cccCCCCcccc---ccccCc-cCCCcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc-------CCccHHH
Confidence 5111110 111 123 43 357999999999875 78999999999999999999999988642 3689887
Q ss_pred HH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 040489 182 HF-QYAMFCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRA 260 (413)
Q Consensus 182 ~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 260 (413)
.+ ..+++++|+.+ ||.+.++. ..+......+.. . ..|. +..+..+.+.+++.+++++
T Consensus 154 ~~~~~~~~~vi~~~-~G~~~~~~--~~~~~~~~~~~~---~-----~~P~-----------~~~~~~~~~~~~~~~~i~~ 211 (415)
T 2zwu_A 154 DYAEPFPIRIFMLL-AGLPEEDI--PHLKYLTDQMTR---P-----DGSM-----------TFAEAKEALYDYLIPIIEQ 211 (415)
T ss_dssp HTTTHHHHHHHHHH-HTCCGGGH--HHHHHHHHHHHS---C-----CSSS-----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCHHHH--HHHHHHHHHHHh---c-----cCHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 65 78999999998 99987532 222222222211 0 0122 1223345566777788877
Q ss_pred HHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHH
Q 040489 261 RKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYT 340 (413)
Q Consensus 261 r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~e 340 (413)
+++.. ..|+++.|++... ++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++
T Consensus 212 r~~~~------------~~dll~~ll~~~~--~~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~ 277 (415)
T 2zwu_A 212 RRQKP------------GTDAISIVANGQV--NGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIE 277 (415)
T ss_dssp HHHSC------------CSSHHHHHHTCEE--TTEECCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhCC------------CCCHHHHHHHhhh--cCCCCCHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhCHHHHHHHHh
Confidence 65421 1279999997642 334599999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 341 EIRGVVGENEEGPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 341 Ei~~v~g~~~~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|++ |++|||+|+||+|||+|.. +.+..++.+ .+...++++.|..+.+++-|
T Consensus 278 E~~---------------~l~a~i~E~lRl~p~~~~~-R~~~~d~~~-----~G~~Ip~Gt~V~~~~~~~~r 328 (415)
T 2zwu_A 278 RPE---------------RIPAACEELLRRFSLVADG-RILTSDYEF-----HGVQLKKGDQILLPQMLSGL 328 (415)
T ss_dssp CGG---------------GHHHHHHHHHHHTCCBCCE-EEESSCEEE-----TTEEECTTCEEECCHHHHHH
T ss_pred CHH---------------HHHHHHHHHHhhcCCcCCc-eeeCCCEEE-----CCEEECCCCEEEeCchhhCC
Confidence 963 9999999999999999964 444445444 47889999999888887655
No 40
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=100.00 E-value=3.4e-35 Score=285.54 Aligned_cols=292 Identities=12% Similarity=0.088 Sum_probs=217.8
Q ss_pred CchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccccCCC--CCCCcccccC--CCcceEeccCChhH
Q 040489 55 EIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFADRPR--PLPTSKIVSS--NQHNISSASYGTTW 129 (413)
Q Consensus 55 ~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~~r~~--~~~~~~~~~~--~~~~i~~~~~g~~w 129 (413)
+++.++.++ ++||||+++++ |+.++++++||+++++||.++ .|.+++. .......+.. .+.++. ..+|+.|
T Consensus 20 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~~h 95 (403)
T 3aba_A 20 LPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLL-WQDEPEH 95 (403)
T ss_dssp SCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCT-TCCTTHH
T ss_pred ChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccc-cCCchhH
Confidence 467788888 89999999997 889999999999999999763 4666532 1010011111 123443 3589999
Q ss_pred HHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHHHHH
Q 040489 130 RLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQIKKI 208 (413)
Q Consensus 130 ~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~ 208 (413)
+++||.+. +.|++..++.+.+.+.+.++.+++.|.+ . + .++|+.+.+ ..+++++|+. +||.+.++. ..+
T Consensus 96 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~-~---~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~--~~~ 165 (403)
T 3aba_A 96 TSDRKLLA-KEFTVRRMQALRPNIQRIVDEHLDAIEA--R-G---GPVDLVKTFANAVPSMVISD-LFGVPVERR--AEF 165 (403)
T ss_dssp HHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHHHHH--H-C---SCEEHHHHTTTHHHHHHHHH-HHTCCGGGH--HHH
T ss_pred HHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh--c-C---CCccHHHHHHHHHHHHHHHH-HcCCCHHHH--HHH
Confidence 99999875 7899999999999999999999999975 1 2 579988766 5789999998 799876432 122
Q ss_pred HHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhc
Q 040489 209 ENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDL 288 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~ 288 (413)
.... ..+.. .. .| . ++..+..+.+.+++.++++++++.. . .|+++.|++.
T Consensus 166 ~~~~----~~~~~--~~--~~--------p--~~~~~~~~~~~~~~~~~i~~r~~~~---------~---~dll~~ll~~ 215 (403)
T 3aba_A 166 QDIA----EAMMR--VD--QD--------A--AATEAAGMRLGGLLYQLVQERRANP---------G---DDLISALITT 215 (403)
T ss_dssp HHHH----HHHSB--SS--SC--------H--HHHHHHHHHHHHHHHHHHHHHHHSC---------C---SSHHHHHHTS
T ss_pred HHHH----HHHHh--cc--Cc--------H--HHHHHHHHHHHHHHHHHHHHHHhCC---------C---CCHHHHHHhh
Confidence 2211 11111 00 00 0 2334455667777888887765421 1 2799999986
Q ss_pred cCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccc
Q 040489 289 QLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDL 368 (413)
Q Consensus 289 ~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtl 368 (413)
.. ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ .|++|||+|+|
T Consensus 216 ~~--~~~~l~~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~---------------~~l~a~i~E~l 278 (403)
T 3aba_A 216 ED--PDGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALLLDSPDQLALLREDP---------------SLVGNAVEELL 278 (403)
T ss_dssp CC--TTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCG---------------GGHHHHHHHHH
T ss_pred cc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHhCH---------------HHHHHHHHHHH
Confidence 43 34569999999999999999999999999999999999999999999985 28999999999
Q ss_pred cccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 369 RIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 369 Rl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+|||+|+.++|.+. ++.+ .+...+++++|..+.+++-|
T Consensus 279 Rl~p~~~~~~~R~~~~d~~~-----~g~~Ip~Gt~V~~~~~~~~r 318 (403)
T 3aba_A 279 RYLTIGQFGGERVATRDVEL-----GGVRIAKGEQVVAHVLAADF 318 (403)
T ss_dssp HHHCSCTTCEEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred hcCCCcccccceEeCCCeEE-----CCEEECCCCEEEechhhhCC
Confidence 999999977777664 3333 47888999999888877655
No 41
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=100.00 E-value=1.1e-35 Score=289.40 Aligned_cols=308 Identities=13% Similarity=0.122 Sum_probs=224.0
Q ss_pred CCCCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEc-CCcc-EEEEeChHHHHHHHHhcCcccccCCCCC
Q 040489 30 KTNLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFI-GPRP-AIFIADRSLAHKALVQNGAIFADRPRPL 107 (413)
Q Consensus 30 ~~~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~-g~~~-~v~i~dpe~i~~il~~~~~~f~~r~~~~ 107 (413)
..+.+|+|+++|+.++.. .+++.++.++. +||||+++++ ++.+ +++++||+.+++||.+ +.|.+++...
T Consensus 6 ~~~~~~~~~~~p~~~~~~------~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~ 76 (406)
T 1s1f_A 6 ISQAVPPVRDWPAVDLPG------SDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMD 76 (406)
T ss_dssp --CCSCCEEECCCCCCCT------TCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTT
T ss_pred HhhhccCCCCCCCCcccc------cCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCC
Confidence 347889999999887732 35788888884 7999999986 5665 9999999999999975 4676654321
Q ss_pred CC----cc-cccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHH
Q 040489 108 PT----SK-IVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDH 182 (413)
Q Consensus 108 ~~----~~-~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~ 182 (413)
.. .. ... .+.++.+ .+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|... + .++|+.+.
T Consensus 77 ~~~~~~~~~~~~-~~~~l~~-~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~---~~~d~~~~ 147 (406)
T 1s1f_A 77 RQVTRLAPHFIP-ARGAVGF-LDPPDHTRLRRSVA-AAFTARGVERVRERSRGMLDELVDAMLRA---G---PPADLTEA 147 (406)
T ss_dssp TTBCBSSSSCSS-CTTSGGG-CCTTHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHH---C---SSEEHHHH
T ss_pred CCcccccccccc-ccccccc-CCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc---C---CCccHHHH
Confidence 11 11 111 1234533 57999999999876 78999999999999999999999998741 2 47998866
Q ss_pred H-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040489 183 F-QYAMFCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRAR 261 (413)
Q Consensus 183 ~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r 261 (413)
+ ..+++++|+. +||.+.++. ..+......+..... | . ++..+..+.+.+++.++++++
T Consensus 148 ~~~~~~~~vi~~-~~G~~~~~~--~~~~~~~~~~~~~~~--------~------~----~~~~~~~~~~~~~~~~~i~~r 206 (406)
T 1s1f_A 148 VLSPFPIAVICE-LMGVPATDR--HSMHTWTQLILSSSH--------G------A----EVSERAKNEMNAYFSDLIGLR 206 (406)
T ss_dssp TTTHHHHHHHHH-HHTCCGGGH--HHHHHHHHHHHHHHT--------T------C----CCCHHHHTHHHHHHHHHHHTS
T ss_pred HhhHhHHHHHHH-HhCCCHHHH--HHHHHHHHHHHhccC--------C------H----HHHHHHHHHHHHHHHHHHHHH
Confidence 6 5799999998 699886432 222222222221110 1 0 011123344556666666655
Q ss_pred HHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHH
Q 040489 262 KKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTE 341 (413)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eE 341 (413)
++. . ..|+++.|++... + ..+|++++.+++.++++|| |||+++++|++++|++||++|+|+++|
T Consensus 207 ~~~---------~---~~d~l~~ll~~~~--~-~~ls~~el~~~~~~l~~AG-eTt~~~l~~~l~~L~~~P~~~~~l~~E 270 (406)
T 1s1f_A 207 SDS---------A---GEDVTSLLGAAVG--R-DEITLSEAVGLAVLLQIGG-EAVTNNSGQMFHLLLSRPELAERLRSE 270 (406)
T ss_dssp CCS---------C---CCSHHHHHHHHHH--T-TSSCHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSHHHHHHHHHC
T ss_pred HhC---------C---CCCHHHHHHHhhc--c-cCCCHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 321 1 1279999997542 2 5699999999999999999 999999999999999999999999998
Q ss_pred HHhhhcCCCCCCCCCChhHHHhhhccccccCCCC-CCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 342 IRGVVGENEEGPKYRVPLFLFICIPDLRIHMHLS-LDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 342 i~~v~g~~~~~~~~~lpyl~avikEtlRl~pp~~-~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++ |++|||+|+||+|||+| +.++|.+. ++.+ .+...+++++|..+.+++-|
T Consensus 271 ~~---------------~l~a~i~E~lRl~p~~~~~~~~R~~~~d~~i-----~G~~Ip~Gt~V~~~~~~~~r 323 (406)
T 1s1f_A 271 PE---------------IRPRAIDELLRWIPHRNAVGLSRIALEDVEI-----KGVRIRAGDAVYVSYLAANR 323 (406)
T ss_dssp GG---------------GHHHHHHHHHHHSCCBSSCCCCEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HH---------------HHHHHHHHHHhhCCCccccCcceEeCCCEEE-----CCEEECCCCEEEeCcHHhcC
Confidence 63 89999999999999999 56777664 3433 47888899999888877655
No 42
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=100.00 E-value=4.4e-35 Score=287.47 Aligned_cols=300 Identities=14% Similarity=0.119 Sum_probs=223.6
Q ss_pred CchHHHHHHHhhcCCeEEEEcC-------CccEEEEeChHHHHHHHHhcCcccccCCCC-CC-CcccccCCCcceEeccC
Q 040489 55 EIEPILRNLHSKLGPVVTLFIG-------PRPAIFIADRSLAHKALVQNGAIFADRPRP-LP-TSKIVSSNQHNISSASY 125 (413)
Q Consensus 55 ~~~~~~~~~~~kyG~i~~~~~g-------~~~~v~i~dpe~i~~il~~~~~~f~~r~~~-~~-~~~~~~~~~~~i~~~~~ 125 (413)
+++.++.++. +||||++++++ +.++++++||+.+++||.++ +.|.+++.. .. ....+...+.++.+ .+
T Consensus 45 ~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~-~d 121 (435)
T 2wm5_A 45 VRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIV-LD 121 (435)
T ss_dssp HHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGG-CC
T ss_pred ChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhcccccc-CC
Confidence 4678888885 79999998875 66899999999999999864 468777532 11 11111100134433 57
Q ss_pred ChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHH
Q 040489 126 GTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQ 204 (413)
Q Consensus 126 g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~ 204 (413)
|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|.... .+ .++|+.+.+ ..+++++|+++ ||.+.++.
T Consensus 122 g~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~-~~---~~vd~~~~~~~~~~~~vi~~~-~G~~~~~~- 194 (435)
T 2wm5_A 122 DPRHQRLRSIVS-RAFTPKVVARIEAAVRDRAHRLVSSMIANN-PD---RQADLVSELAGPLPLQIICDM-MGIPKADH- 194 (435)
T ss_dssp TTHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHHHHHHHHC-TT---SEEEHHHHTTTHHHHHHHHHH-HTCCGGGH-
T ss_pred cHHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhcC-CC---CcEehHHHHHHHHHHHHHHHH-cCCCHHHH-
Confidence 999999999875 789999999999999999999999997642 12 479998766 78999999999 99987532
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHH
Q 040489 205 IKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDT 284 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ 284 (413)
..+......+.... .|.+.. .+++..+..+.+.+++.++++++++.. ..|+++.
T Consensus 195 -~~~~~~~~~~~~~~--------~p~~~~-----~~~~~~~~~~~~~~~~~~~i~~r~~~~------------~~dll~~ 248 (435)
T 2wm5_A 195 -QRIFHWTNVILGFG--------DPDLAT-----DFDEFMQVSADIGAYATALAEDRRVNH------------HDDLTSS 248 (435)
T ss_dssp -HHHHHHHHHHHHTT--------CTTSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHSC------------CSSHHHH
T ss_pred -HHHHHHHHHHhccC--------Ccchhh-----hHHHHHHHHHHHHHHHHHHHHHHhcCC------------CCCHHHH
Confidence 22322222222211 122211 123444556677788888888775421 1279999
Q ss_pred HHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhh
Q 040489 285 LLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFIC 364 (413)
Q Consensus 285 ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avi 364 (413)
|++... ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ +|++|||
T Consensus 249 ll~~~~--~~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~~--------------~~l~a~i 312 (435)
T 2wm5_A 249 LVEAEV--DGERLSSREIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSDFD--------------GLAPTAV 312 (435)
T ss_dssp HHHCCB--TTBCCCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCHHHHHHHHHSHH--------------HHHHHHH
T ss_pred HHhhhc--cCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCHHHHHHHhChH--------------hHHHHHH
Confidence 998642 345699999999999999999999999999999999999999999999985 3999999
Q ss_pred hccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 365 IPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 365 kEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+|+||+|||+| .++|.+. ++.+ .+.+.++++.|..+.+++-|
T Consensus 313 ~E~lRl~p~~~-~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 355 (435)
T 2wm5_A 313 EEIVRWASPVV-YMRRTLTQDIEL-----RGTKMAAGDKVSLWYCSANR 355 (435)
T ss_dssp HHHHHHHCSBC-CEEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HHHHhhcCccc-CcceEeCCCeeE-----CCEEECCCCEEEeCHHHhcC
Confidence 99999999999 6677664 4443 46888999999888877755
No 43
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=100.00 E-value=1e-34 Score=283.26 Aligned_cols=293 Identities=15% Similarity=0.112 Sum_probs=218.2
Q ss_pred CCchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccccCCCC-CCCcccccC--CCcceEeccCChhH
Q 040489 54 SEIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFADRPRP-LPTSKIVSS--NQHNISSASYGTTW 129 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~-~~~~~~~~~--~~~~i~~~~~g~~w 129 (413)
.+++.++.++ ++||||+++++ |+.++++++||+.+++||.++ .|.+++.. ... ..+.. .+.++. ..+|+.|
T Consensus 37 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~-~~~~~~~~~~~l~-~~dg~~h 111 (417)
T 2y5n_A 37 LTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDE-PRTRPEMVKGGLL-SMDPPEH 111 (417)
T ss_dssp CCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCC-CBSSSSCCCCSGG-GCCTTHH
T ss_pred cCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccc-cccCcccccccCc-cCCchHH
Confidence 3578899999 89999999997 889999999999999999753 46555321 111 11111 123443 3589999
Q ss_pred HHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHHHHH
Q 040489 130 RLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQIKKI 208 (413)
Q Consensus 130 ~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~ 208 (413)
+++||.+. +.|++..++.+.+.+.+.++.+++.|... + .++|+.+.+ ..+++++|+. +||.+.++. ..+
T Consensus 112 ~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~---~---~~vdl~~~~~~~~~~~vi~~-~~G~~~~~~--~~~ 181 (417)
T 2y5n_A 112 SRLRRLVV-KAFTARRAESLRPRAREIAHELVDQMAAT---G---QPADLVAMFARQLPVRVICE-LLGVPSADH--DRF 181 (417)
T ss_dssp HHHHHHHH-HHSCHHHHHHTHHHHHHHHHHHHHHHHHH---C---SSEEHHHHTTTTHHHHHHHH-HHTCCGGGH--HHH
T ss_pred HHHHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhC---C---CCeeHHHHHHHHhHHHHHHH-HcCCCHHHH--HHH
Confidence 99999875 78999999999999999999999998731 1 279988776 5689999998 699876431 122
Q ss_pred HHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhc
Q 040489 209 ENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDL 288 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~ 288 (413)
.. ....+.. ... .| .++..+..+.+.+++.++++++++.. . .|+++.|++.
T Consensus 182 ~~----~~~~~~~--~~~-~~----------~~~~~~~~~~l~~~~~~~i~~r~~~~---------~---~dll~~ll~~ 232 (417)
T 2y5n_A 182 TR----WSGAFLS--TAE-VT----------AEEMQEAAEQAYAYMGDLIDRRRKEP---------T---DDLVSALVQA 232 (417)
T ss_dssp HH----HHHTTST--TCC-CC----------HHHHHHHHHHHHHHHHHHHHHHHHSC---------C---SSHHHHHHHC
T ss_pred HH----HHHHHhc--ccC-CC----------HHHHHHHHHHHHHHHHHHHHHHHhCC---------C---CCHHHHHHhh
Confidence 11 1111111 000 01 12344455667778888887765421 1 2799999986
Q ss_pred cCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccc
Q 040489 289 QLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDL 368 (413)
Q Consensus 289 ~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtl 368 (413)
.. ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ .|++|||+|+|
T Consensus 233 ~~--~~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E~---------------~~l~a~i~E~l 295 (417)
T 2y5n_A 233 RD--QQDSLSEQELLDLAIGLLVAGYESTTTQIADFVYLLMTRPELRRQLLDRP---------------ELIPSAVEELT 295 (417)
T ss_dssp CB--TTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCG---------------GGHHHHHHHHH
T ss_pred hc--cCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCHHHHHHHHhCH---------------HHHHHHHHHHH
Confidence 42 34569999999999999999999999999999999999999999999985 28999999999
Q ss_pred cccCCCC-CCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 369 RIHMHLS-LDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 369 Rl~pp~~-~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+|||+| +.++|.+. ++.+ .+...+++++|..+.+++-|
T Consensus 296 Rl~p~~~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 336 (417)
T 2y5n_A 296 RWVPLGVGTAFPRYAVEDVTL-----RGVTIRAGEPVLASTGAANR 336 (417)
T ss_dssp HHCCCBSSCCSCEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HhcCCccccccceEeCCCEEE-----CCEEECCCCEEEeChhhhCC
Confidence 9999999 56777664 3333 47888999999888887765
No 44
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=100.00 E-value=1.1e-34 Score=282.58 Aligned_cols=292 Identities=14% Similarity=0.130 Sum_probs=217.3
Q ss_pred CCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCC----cccccCCCcceEeccCChhH
Q 040489 54 SEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPT----SKIVSSNQHNISSASYGTTW 129 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~----~~~~~~~~~~i~~~~~g~~w 129 (413)
.+++.++.++ ++||||+++++|+.++++++||+.++++|.++ .|.+++..... ..+....+.++. ..+|+.|
T Consensus 20 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~~h 95 (411)
T 3a4g_A 20 QNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDP--RLSKDWRHTLPEDQRADMPATPTPMMI-LMDPPDH 95 (411)
T ss_dssp TCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCT--TEESCGGGGSCGGGCTTCCSCSSCCGG-GCCTTHH
T ss_pred cCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCC--CcccccccccccccccccCcccccccc-cCCchHH
Confidence 3578899999 99999999999988999999999999999764 37666431100 011110123443 3589999
Q ss_pred HHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHH-HHHHHHHHHHHHHhcCCCChHHHHHH
Q 040489 130 RLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDH-FQYAMFCLLVLMCFGDKLDESQIKKI 208 (413)
Q Consensus 130 ~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~ 208 (413)
+++||.+. +.|+++.++.+.+.+.+.++.+++.|.. + .++|+... ...+++++|+.+ ||.+.++. ..+
T Consensus 96 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~---~~vd~~~~~~~~~~~~vi~~~-~G~~~~~~--~~~ 164 (411)
T 3a4g_A 96 TRLRKLVG-RSFTVRRMNELEPRITEIADGLLAGLPT----D---GPVDLMREYAFQIPVQVICEL-LGVPAEDR--DDF 164 (411)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHSCS----S---SCEEHHHHTTTTHHHHHHHHH-HTCCGGGH--HHH
T ss_pred HHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh----c---CCccHHHHHHHHhHHHHHHHH-hCCCHHHH--HHH
Confidence 99999875 7899999999999999999999888753 1 46898755 468999999975 99876431 122
Q ss_pred HHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhc
Q 040489 209 ENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDL 288 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~ 288 (413)
...... +... .| . ++..+..+.+.+++.++++++++.. ..|+++.|++.
T Consensus 165 ~~~~~~----~~~~-----~p------~----~~~~~~~~~~~~~~~~~i~~r~~~~------------~~d~l~~ll~~ 213 (411)
T 3a4g_A 165 SAWSSV----LVDD-----SP------A----DDKNAAMGKLHGYLSDLLERKRTEP------------DDALLSSLLAV 213 (411)
T ss_dssp HHHHHH----HTTS-----SC------T----TTHHHHHHHHHHHHHHHHHHHHHSC------------CSSHHHHHHHC
T ss_pred HHHHHH----Hhcc-----CC------H----HHHHHHHHHHHHHHHHHHHHHHhCC------------CCCHHHHHHHh
Confidence 221111 1111 12 0 1222344566777778887765421 12799999986
Q ss_pred cCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccc
Q 040489 289 QLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDL 368 (413)
Q Consensus 289 ~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtl 368 (413)
..+ ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ .|++|||+|+|
T Consensus 214 ~~~-~~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~---------------~~l~a~i~E~l 277 (411)
T 3a4g_A 214 SDE-DGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDP---------------SLISSAVEEFL 277 (411)
T ss_dssp CCT-TCCCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHHHHCG---------------GGHHHHHHHHH
T ss_pred hcc-CCCCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhCHHHHHHHhcCH---------------HHHHHHHHHHH
Confidence 431 34469999999999999999999999999999999999999999999985 28999999999
Q ss_pred cccCCCCCCCcchhhh-hhhccccccccccccccccceeeeeeec
Q 040489 369 RIHMHLSLDDPECVRA-IWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 369 Rl~pp~~~~~pr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+|||+|+.++|.+.+ +.+ .+.+.+++++|..+.+++-|
T Consensus 278 Rl~p~~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 317 (411)
T 3a4g_A 278 RFDSPVSQAPIRFTAEDVTY-----SGVTIPAGEMVMLGLAAANR 317 (411)
T ss_dssp HHTCSBCBCCCEEESSCEEE-----TTEEECTTCEEEEBHHHHTT
T ss_pred HhcccccCCceeEeCCCEEE-----CCEEECCCCEEEeChhhhCC
Confidence 9999999777776643 333 47889999999988888765
No 45
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=100.00 E-value=4.5e-35 Score=286.16 Aligned_cols=299 Identities=15% Similarity=0.174 Sum_probs=220.1
Q ss_pred CCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCC---C-CC---CcccccCC-CcceEeccC
Q 040489 54 SEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPR---P-LP---TSKIVSSN-QHNISSASY 125 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~---~-~~---~~~~~~~~-~~~i~~~~~ 125 (413)
.+++.++.++ ++||||++ + ++.++++++||+.+++||.++. |.+++. . .. ....++.. +.++. ..+
T Consensus 26 ~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 99 (419)
T 1q5d_A 26 EDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLF-GLP 99 (419)
T ss_dssp TCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTT-TSC
T ss_pred hChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccccc-cCC
Confidence 3678889988 78999998 6 7778999999999999997653 777651 0 00 00111100 12343 357
Q ss_pred ChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHH-HHHHHHHHHHHHHhcCCCChHH
Q 040489 126 GTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDH-FQYAMFCLLVLMCFGDKLDESQ 204 (413)
Q Consensus 126 g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~vi~~~~fG~~~~~~~ 204 (413)
|+.|+++||.+. +.|++..++.+.+.+++.++.+++.|.. . .++|+... ...+++++|+.+ ||.+.++.
T Consensus 100 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~----~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~- 169 (419)
T 1q5d_A 100 PEDHARVRKLVN-PSFTSRAIDLLRAEIQRTVDQLLDARSG---Q----EEFDVVRDYAEGIPMRAISAL-LKVPAECD- 169 (419)
T ss_dssp HHHHHHHHHHHG-GGGSHHHHGGGHHHHHHHHHHHHHHHTT---S----SCEETTTTTGGGSHHHHHHHH-TTCCGGGH-
T ss_pred chHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHh---c----CCCCHHHHHHHHHHHHHHHHH-hCCCHHHH-
Confidence 999999999875 7899999999999999999999998863 1 36888755 488999999998 99987532
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh-hHHH
Q 040489 205 IKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVL-SYVD 283 (413)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~-~~ld 283 (413)
..+......+..... ..++|+.. ..+++..+....+.+++.++++++++.. .. |+++
T Consensus 170 -~~~~~~~~~~~~~~~----~~~~P~~~-----~~~~~~~~~~~~~~~~~~~~i~~r~~~~------------~~~dll~ 227 (419)
T 1q5d_A 170 -EKFRRFGSATARALG----VGLVPRVD-----EETKTLVASVTEGLALLHGVLDERRRNP------------LENDVLT 227 (419)
T ss_dssp -HHHHHHHHHHHHHTT----TTTSSCCC-----SCHHHHHHHHHHHHHHHHHHHHHHHHSC------------CSSCHHH
T ss_pred -HHHHHHHHHHHHhcc----cccccCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CCCCHHH
Confidence 222222222222211 12234321 1234445566677778888887765321 12 7999
Q ss_pred HHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHh
Q 040489 284 TLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFI 363 (413)
Q Consensus 284 ~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~av 363 (413)
.|++... ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ .|++||
T Consensus 228 ~ll~~~~--~~~~l~~~ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E~---------------~~l~a~ 290 (419)
T 1q5d_A 228 MLLQAEA--DGSRLSTKELVALVGAIIAAGTDTTIYLIAFAVLNLLRSPEALELVKAEP---------------GLMRNA 290 (419)
T ss_dssp HHHHHHH--SSTTCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHCG---------------GGHHHH
T ss_pred HHHhhhc--cCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHhCH---------------HHHHHH
Confidence 9987542 34469999999999999999999999999999999999999999999984 399999
Q ss_pred hhccccccCCCCCCCcchhhh-hhhccccccccccccccccceeeeeeec
Q 040489 364 CIPDLRIHMHLSLDDPECVRA-IWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 364 ikEtlRl~pp~~~~~pr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+|+||+|||+|+.++|.+.+ +.+ .+.+.+++++|..+.+++-|
T Consensus 291 i~E~lRl~p~~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 335 (419)
T 1q5d_A 291 LDEVLRFDNILRIGTVRFARQDLEY-----CGASIKKGEMVFLLIPSALR 335 (419)
T ss_dssp HHHHHHHSCSBSSEEEEEESSCEEE-----TTEEECTTCEEEEEHHHHTT
T ss_pred HHHHHHhCCccccccceeeCCCeEE-----CCEEECCCCEEEecHHHhcC
Confidence 999999999999777886653 333 47889999999988887765
No 46
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.8e-34 Score=280.05 Aligned_cols=291 Identities=11% Similarity=0.040 Sum_probs=217.1
Q ss_pred CCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcccccCCCcceEeccCChhHHHHH
Q 040489 54 SEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVSSNQHNISSASYGTTWRLFR 133 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~R 133 (413)
.+++.++.++++ ||||++ ++. ++++++||+.+++|+.+. ..|.+++... ..... +.++. ..+|+.|+++|
T Consensus 18 ~~p~~~~~~l~~-~Gpv~~--~~~-~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~~---~~~l~-~~~g~~h~~~R 87 (398)
T 2xkr_A 18 REARAAYRWMRA-NQPVFR--DRN-GLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQPA---LPMMI-DMDDPAHLLRR 87 (398)
T ss_dssp TTHHHHHHHHHH-HCSEEE--CTT-CCEEECSHHHHHHHHTCT-TTEESTTCSS-TTSCC---CSSGG-GCCTTHHHHHH
T ss_pred cChhHHHHHHHh-cCCeee--cCC-CeEEEecHHHHHHHHhCc-ccccCccccC-Ccccc---ccccc-ccCchHHHHHH
Confidence 467888999977 999995 454 789999999999999754 3677665321 11221 22443 35799999999
Q ss_pred HHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 040489 134 RNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLD-HFQYAMFCLLVLMCFGDKLDESQIKKIENVQ 212 (413)
Q Consensus 134 k~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~-~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 212 (413)
|.+. +.|++..++.+.+.+.+.++.+++.|.. . .++|+.. ....+++++|+.+ ||.+.++. ..+....
T Consensus 88 ~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~----~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~--~~~~~~~ 156 (398)
T 2xkr_A 88 KLVN-AGFTRKRVKDKEASIAALCDTLIDAVCE---R----GECDFVRDLAAPLPMAVIGDM-LGVRPEQR--DMFLRWS 156 (398)
T ss_dssp HHHG-GGSCHHHHHTTHHHHHHHHHHHHHTTTT---T----SEEEHHHHTTTHHHHHHHHHH-HTCCGGGH--HHHHHHH
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHhhhh---c----CCccHHHHHHHHHHHHHHHHH-hCCCHHHH--HHHHHHH
Confidence 9875 8899999999999999999999887753 1 3689884 4578999999998 99986432 2232222
Q ss_pred HHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCc
Q 040489 213 RTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPE 292 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~ 292 (413)
..+..... ..++| ..+++..+..+.+.+++.++++++++.. ..|+++.|++...
T Consensus 157 ~~~~~~~~----~~~~p--------~~~~~~~~~~~~~~~~~~~~i~~r~~~~------------~~dll~~ll~~~~-- 210 (398)
T 2xkr_A 157 DDLVTFLS----SHVSQ--------EDFQITMDAFAAYNDFTRATIAARRADP------------TDDLVSVLVSSEV-- 210 (398)
T ss_dssp HHHHHHHT----SCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHSC------------CSSHHHHHHHCCB--
T ss_pred HHHHhccC----cccch--------hhHHHHHHHHHHHHHHHHHHHHHHHhCC------------CCCHHHHHHHhhc--
Confidence 22222111 11122 1234445556677788888887765421 1279999998642
Q ss_pred ccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccccccC
Q 040489 293 EKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRIHM 372 (413)
Q Consensus 293 ~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~p 372 (413)
++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|+||+||
T Consensus 211 ~~~~ls~~ei~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~i~E~lRl~p 275 (398)
T 2xkr_A 211 DGERLSDDELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQRDPS---------------LLPGAIEEMLRWTA 275 (398)
T ss_dssp TTBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHSHHHHHHHHHCGG---------------GHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHCHHHHHHHHhCHH---------------HHHHHHHHHHhhcc
Confidence 345699999999999999999999999999999999999999999999974 89999999999999
Q ss_pred CCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 373 HLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 373 p~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+|. ++|.+. ++.+ .+...+++++|..+.+++-|
T Consensus 276 ~~~~-~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 310 (398)
T 2xkr_A 276 PVKN-MCRVLTADTEF-----HGTALCAGEKMMLLFESANF 310 (398)
T ss_dssp SBCE-EEEEESSCEEE-----TTEEECTTCEEEEEHHHHHT
T ss_pred cccC-cceEECCCeeE-----CCEEECCCCEEEeChhhhcC
Confidence 9998 677664 3433 47888999999888887755
No 47
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=100.00 E-value=2e-34 Score=281.38 Aligned_cols=293 Identities=14% Similarity=0.106 Sum_probs=219.3
Q ss_pred CCchHHHHHHHhhcCCeEEEEcC-CccEEEEeChHHHHHHHHhcCcccccCCCCC---CCcccc---cCCCcceEeccCC
Q 040489 54 SEIEPILRNLHSKLGPVVTLFIG-PRPAIFIADRSLAHKALVQNGAIFADRPRPL---PTSKIV---SSNQHNISSASYG 126 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~g-~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~---~~~~~~---~~~~~~i~~~~~g 126 (413)
.+++.++.++.++ |||++++++ +.++++++||+.+++||.++ .|.+++... ...... +..+.++. ..+|
T Consensus 29 ~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~dg 104 (417)
T 3tyw_A 29 FAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFI-RTDA 104 (417)
T ss_dssp TSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGG-GCCH
T ss_pred cCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchh-hcCC
Confidence 4678889999888 999999986 48899999999999999765 566643211 111111 01123443 3579
Q ss_pred hhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHH
Q 040489 127 TTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQI 205 (413)
Q Consensus 127 ~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~ 205 (413)
+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|... | .++|+.+.+ ..+++++|+.+ ||.+.++..
T Consensus 105 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g---~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~~- 175 (417)
T 3tyw_A 105 PEHTRYRRMLL-PAFTVRRVRAMRPAVQARVDEILDGMLAA---G---GPVDLVSAYANAVSTSVICEL-LGIPRHDLE- 175 (417)
T ss_dssp HHHHHHHHHHG-GGGCHHHHHHTHHHHHHHHHHHHHHHHHH---C---SSEEHHHHTHHHHHHHHHHHH-HTCCTTTTT-
T ss_pred cHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhh---C---CCcchHHHHHHHHHHHHHHHH-hCCCHHHHH-
Confidence 99999999875 89999999999999999999999998762 3 579998887 57899999997 999875421
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHH
Q 040489 206 KKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTL 285 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~l 285 (413)
.+......+. . ..+. .++..+..+.+.+++.++++++++.. ..|+++.+
T Consensus 176 -~~~~~~~~~~----~-----~~~~---------~~~~~~~~~~l~~~~~~~i~~r~~~~------------~~d~l~~l 224 (417)
T 3tyw_A 176 -FFRDVTRISG----S-----RNST---------AEQVSEALGGLFGLLGGLVAERREEP------------RDDLISKL 224 (417)
T ss_dssp -HHHHHHHHHH----S-----SSSC---------TTHHHHHHHHHHHHHHHHHHHHHSSC------------CSSHHHHH
T ss_pred -HHHHHHHHHh----c-----ccCC---------HHHHHHHHHHHHHHHHHHHHHHhhCC------------CCCHHHHH
Confidence 1111111111 1 0110 11233445566777778887765321 12899999
Q ss_pred HhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhh
Q 040489 286 LDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICI 365 (413)
Q Consensus 286 l~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avik 365 (413)
++... ++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+
T Consensus 225 l~~~~--~~~~ls~~el~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~i~ 287 (417)
T 3tyw_A 225 VTDHL--VPGNVTTEQLLSTLGITINAGRETTTSMIALSTLLLLDRPELPAELRKDPD---------------LMPAAVD 287 (417)
T ss_dssp HHHTT--TTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHCGG---------------GHHHHHH
T ss_pred HHhcc--cCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCHHHHHHHHhChH---------------HHHHHHH
Confidence 98653 234699999999999999999999999999999999999999999999853 8999999
Q ss_pred ccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 366 PDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 366 EtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+||++||++..++|.+. ++.+ .+.+.+++++|..+.+++-|
T Consensus 288 E~lRl~p~~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 330 (417)
T 3tyw_A 288 ELLRVLSVADSIPLRVAAEDIEL-----SGRTVPADDGVIALLAGANH 330 (417)
T ss_dssp HHHHHHCSCTTCCEEEESSCEEC-----SSCEECTTCEEEECHHHHTT
T ss_pred HHHHhccccccCceeEeCCCeEE-----CCEEECCCCEEEEehhhhcC
Confidence 999999999998777664 3333 56888899998888877655
No 48
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=100.00 E-value=1.8e-34 Score=282.28 Aligned_cols=297 Identities=13% Similarity=0.081 Sum_probs=214.9
Q ss_pred CchHHHHHHHhhcCCeEEEEcC--CccEEEEeChHHHHHHHHhcCcccccCCCC-------C-C-C---ccccc-CCCcc
Q 040489 55 EIEPILRNLHSKLGPVVTLFIG--PRPAIFIADRSLAHKALVQNGAIFADRPRP-------L-P-T---SKIVS-SNQHN 119 (413)
Q Consensus 55 ~~~~~~~~~~~kyG~i~~~~~g--~~~~v~i~dpe~i~~il~~~~~~f~~r~~~-------~-~-~---~~~~~-~~~~~ 119 (413)
+++.++.++. +||||+++++| +.++++++||+.+++||.++ .|.+++.. . . . ...+. .++.+
T Consensus 21 ~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 2z3t_A 21 DPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVENW 97 (425)
T ss_dssp CCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTTC
T ss_pred ChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccccccccc
Confidence 4678888885 59999999987 77899999999999999754 67776531 1 0 0 00011 01134
Q ss_pred eEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcC
Q 040489 120 ISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGD 198 (413)
Q Consensus 120 i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~ 198 (413)
+.+ .+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|... .++|+.+.+ ..+++++|+.+ ||.
T Consensus 98 l~~-~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-------g~~dl~~~~~~~~~~~vi~~~-~G~ 167 (425)
T 2z3t_A 98 LVF-LDPPHHTELRSLLT-TEFSPSIVTGLRPRIAELASALLDRLRAQ-------RRPDLVEGFAAPLPILVISAL-LGI 167 (425)
T ss_dssp GGG-CCHHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTTS-------SSCBHHHHTTTHHHHHHHHHH-HTC
T ss_pred ccc-CCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHHHHHHH-hCC
Confidence 433 47999999999875 88999999999999999999999988531 268887754 78999999998 998
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 040489 199 KLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYV 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~ 278 (413)
+.++. ..+......+.. ..+++| + ....+++..+..+.+.+++.++++++++.. .
T Consensus 168 ~~~~~--~~~~~~~~~~~~------~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~------------~ 222 (425)
T 2z3t_A 168 PEEDH--TWLRANAVALQE------ASTTRA-R----DGRGYARAEAASQEFTRYFRREVDRRGGDD------------R 222 (425)
T ss_dssp CGGGH--HHHHHHHHHHHT------TCTTCC-C-------HHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred CHHHH--HHHHHHHHHHHh------hccccC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------C
Confidence 86432 222222222211 111122 1 111234445556667777777776654321 1
Q ss_pred hhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCCh
Q 040489 279 LSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVP 358 (413)
Q Consensus 279 ~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lp 358 (413)
.|+++.|++... ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|++
T Consensus 223 ~dll~~ll~~~~--~~~~ls~~el~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~~--------------- 285 (425)
T 2z3t_A 223 DDLLTLLVRARD--TGSPLSVDGIVGTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDELRTTPE--------------- 285 (425)
T ss_dssp -CHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHCHHHHHHHHHCGG---------------
T ss_pred CCHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHhChH---------------
Confidence 279999987642 245699999999999999999999999999999999999999999999862
Q ss_pred hHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 359 LFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 359 yl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|++|||+|+||+|||+| .++|.+. ++.+ .+...+++++|..+.+++-|
T Consensus 286 ~l~a~i~E~lRl~p~~~-~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 334 (425)
T 2z3t_A 286 STPAAVEELMRYDPPVQ-AVTRWAYEDIRL-----GDHDIPRGSRVVALLGSANR 334 (425)
T ss_dssp GHHHHHHHHHHHSCSBC-EEEEEESSCEEE-----TTEEECTTCEEEEEHHHHTT
T ss_pred hHHHHHHHHHHhCCccc-CcceEeCCCeeE-----CCEEECCCCEEEeChhhhCC
Confidence 99999999999999999 6777664 3333 47889999999988887765
No 49
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=100.00 E-value=2.1e-34 Score=282.52 Aligned_cols=312 Identities=11% Similarity=0.014 Sum_probs=220.8
Q ss_pred CCCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEE--------cCCccEEEEeChHHHHHHHHhcCcccccC
Q 040489 32 NLPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLF--------IGPRPAIFIADRSLAHKALVQNGAIFADR 103 (413)
Q Consensus 32 ~~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~--------~g~~~~v~i~dpe~i~~il~~~~~~f~~r 103 (413)
..||+|.++++++.... ...+++.++.++ ++||||+++. +|+.+++++++++.+++|+.+ ...|.++
T Consensus 18 ~~p~~~~~~~~~~~~~~---~~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~-~~~fs~~ 92 (433)
T 3ivy_A 18 PSPNLPPGFDFTDPAIY---AERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRH-SDVFSSY 92 (433)
T ss_dssp --CCCCTTCCTTCHHHH---TTCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHC-TTTEEST
T ss_pred CCCCCCCCCCCCCHHHh---hcCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcC-hhhccCC
Confidence 45667777766554322 124588899999 8899999988 555789999999999999964 3567766
Q ss_pred CCCCCCc-------ccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 040489 104 PRPLPTS-------KIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVP 176 (413)
Q Consensus 104 ~~~~~~~-------~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (413)
+...... ......+.++. ..+|+.|+++||.+ .+.|++..++.+.+.+.+.++.+++.|... .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-------~~ 163 (433)
T 3ivy_A 93 ENGVIPRFKNDIAREDIEVQRFVML-NMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAAA-------GS 163 (433)
T ss_dssp TTCSCCCCCTTCCHHHHHGGGGSGG-GCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHHH-------CE
T ss_pred cccccccccccccccccccccCCcc-ccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhhC-------CC
Confidence 5432111 01111122443 46899999999987 488999999999999999999999998732 46
Q ss_pred cchHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHH
Q 040489 177 VRVLDHF-QYAMFCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLV 255 (413)
Q Consensus 177 vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~ 255 (413)
+|+.+.+ ..+++++|+++ ||.+. +....+.. ....+.. ...|.+.. .+..+..+.+.+++.
T Consensus 164 ~d~~~~~~~~~~~~vi~~l-~G~~~--~~~~~~~~----~~~~~~~----~~~p~~~~-------~~~~~~~~~~~~~~~ 225 (433)
T 3ivy_A 164 GDFVEQVSCELPLQAIAGL-LGVPQ--EDRGKLFH----WSNEMTG----NEDPEYAH-------IDPKASSAELIGYAM 225 (433)
T ss_dssp EEHHHHTTSHHHHHHHHHH-HTCCH--HHHHHHHH----HHTTCSC----CCCGGGTT-------CCHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHH-cCCCH--HHHHHHHH----HHHHHhc----cCCchhhh-------HHHHHHHHHHHHHHH
Confidence 8988887 99999999996 99652 22222211 1111111 11222211 022334456677777
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHH
Q 040489 256 PLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQ 335 (413)
Q Consensus 256 ~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq 335 (413)
++++++++.. .+ |+++.|++... ++..+|++++.+++.++++||+|||+++++|++++|++||++|
T Consensus 226 ~~i~~r~~~~---------~~---dll~~ll~~~~--~~~~ls~~ei~~~~~~ll~AG~dTTa~~l~~~l~~L~~~P~~~ 291 (433)
T 3ivy_A 226 KMAEEKAKNP---------AD---DIVTQLIQADI--DGEKLSDDEFGFFVVMLAVAGNETTRNSITQGMMAFAEHPDQW 291 (433)
T ss_dssp HHHHHC-------------------CHHHHHSCC----CCCCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCC---------CC---cHHHHHHhhhc--CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCHHHH
Confidence 7777664321 12 79999998643 4457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCChhHHHhhhccccccCCCCCCCcchh-hhhhhccccccccccccccccceeeeeeec
Q 040489 336 ETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRIHMHLSLDDPECV-RAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 336 ~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+|+++|++ +|||+|+||+|||++.. +|.+ .++.+ .+...++++.|..+.+++-|
T Consensus 292 ~~l~~E~~-----------------~a~i~E~LRl~p~~~~~-~R~~~~d~~l-----~G~~Ip~G~~V~~~~~~~~r 346 (433)
T 3ivy_A 292 ELYKKVRP-----------------ETAADEIVRWATPVTAF-QRTALRDYEL-----SGVQIKKGQRVVMFYRSANF 346 (433)
T ss_dssp HHHHHHCC-----------------TTHHHHHHHHHCSBCEE-EEEESSCEEE-----TTEEECTTCEEEEEHHHHTT
T ss_pred HHHHhCcc-----------------cchhHHHhhhCcchhce-eeEECCCEEE-----CCEEECCCCEEEEChhhhcC
Confidence 99999974 69999999999999984 6655 44444 46888899988888777655
No 50
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=100.00 E-value=9.7e-35 Score=282.84 Aligned_cols=298 Identities=16% Similarity=0.143 Sum_probs=217.0
Q ss_pred CCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCC--CCC---Cc---ccccC-CCcceEecc
Q 040489 54 SEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPR--PLP---TS---KIVSS-NQHNISSAS 124 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~--~~~---~~---~~~~~-~~~~i~~~~ 124 (413)
.+++..+.++ ++||||+++++++.++++++||+++++|+.++. +.+++. ... .. .++.. ...++ +..
T Consensus 15 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 90 (408)
T 1odo_A 15 ADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENM-FTA 90 (408)
T ss_dssp TTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSG-GGC
T ss_pred CChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--cccccccccccccccccccccccccccccc-ccc
Confidence 4678889999 999999999988889999999999999996542 333321 000 00 01100 11234 345
Q ss_pred CChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHH-HHHHHHHHHHHhcCCCChH
Q 040489 125 YGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQ-YAMFCLLVLMCFGDKLDES 203 (413)
Q Consensus 125 ~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~vi~~~~fG~~~~~~ 203 (413)
+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|.+.. .+ .++|+.+.+. .+++|+|+. +||.+.++
T Consensus 91 ~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~---~~~d~~~~~~~~~~~~vi~~-~~G~~~~~- 163 (408)
T 1odo_A 91 YGPNHRKLRRLVA-PAFSARRVDAMRPAVEAMVTGLVDRLAELP-AG---EPVDLRQELAYPLPIAVIGH-LMGVPQDR- 163 (408)
T ss_dssp CHHHHHHHHHTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHSC-TT---SCEEHHHHTTTHHHHHHHHH-HHTCCHHH-
T ss_pred CChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhhc-CC---CCcchHHHHhhhhHHHHHHH-HhCCCHHH-
Confidence 8999999999865 889999999999999999999999997542 13 5799998886 599999996 79986532
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHH
Q 040489 204 QIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVD 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld 283 (413)
...+......++ ... .+ .++..+..+.+.+++.++++++++.. + .|+++
T Consensus 164 -~~~~~~~~~~~~----~~~----~~----------~~~~~~~~~~~~~~~~~~i~~r~~~~---------~---~d~l~ 212 (408)
T 1odo_A 164 -RDGFRALVDGVF----DTT----LD----------QAEAQANTARLYEVLDQLIAAKRATP---------G---DDMTS 212 (408)
T ss_dssp -HHHHHHHHHHHH----CTT----CC----------HHHHHHHHHHHHHHHHHHHHHHHHSC---------C---SSHHH
T ss_pred -HHHHHHHHHHHh----ccc----CC----------HHHHHHHHHHHHHHHHHHHHHHhhCC---------C---CCHHH
Confidence 122222211111 100 00 12334455667777888887765321 1 27999
Q ss_pred HHHhccCCc-ccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHH
Q 040489 284 TLLDLQLPE-EKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLF 362 (413)
Q Consensus 284 ~ll~~~~~~-~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~a 362 (413)
.|++...++ ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ +|++|
T Consensus 213 ~ll~~~~~~~~~~~l~~~ei~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e~---------------~~l~a 277 (408)
T 1odo_A 213 LLIAARDDEGDGDRLSPEELRDTLLLMISAGYETTVNVIDQAVHTLLTRPDQLALVRKGE---------------VTWAD 277 (408)
T ss_dssp HHHHHHCC-----CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHTS---------------SCHHH
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCHHHHHHHHhCH---------------HHHHH
Confidence 999765321 14569999999999999999999999999999999999999999999973 37999
Q ss_pred hhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 363 ICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 363 vikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
||+|+||+|||+|..++|.+. ++.+. .+...+++++|..+.+++-|
T Consensus 278 ~i~E~lRl~p~~~~~~~R~~~~d~~l~----~G~~Ip~Gt~V~~~~~~~~r 324 (408)
T 1odo_A 278 VVEETLRHEPAVKHLPLRYAVTDIALP----DGRTIARGEPILASYAAANR 324 (408)
T ss_dssp HHHHHHHHSCSBSCEEEEEESSCEECT----TSCEECTTCEEEECHHHHTT
T ss_pred HHHHHHhhCCCccCCcceEeCCCeEcC----CCcEECCCCEEEeChhhhcC
Confidence 999999999999987777664 34432 17889999999988888765
No 51
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=100.00 E-value=2.8e-34 Score=279.89 Aligned_cols=292 Identities=12% Similarity=0.090 Sum_probs=216.4
Q ss_pred CchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccccCCCCCCCc------cccc--CCCcc-eEecc
Q 040489 55 EIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTS------KIVS--SNQHN-ISSAS 124 (413)
Q Consensus 55 ~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~------~~~~--~~~~~-i~~~~ 124 (413)
+++.++.++. +||||+++++ |+.++++++||+.++++|.+ ..|.+++...... ..+. .++.+ +. ..
T Consensus 23 ~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 98 (413)
T 2z36_A 23 APPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLAD--GRFSSDKRKDGFPLFTLDAATLQQLRSQPPLML-GM 98 (413)
T ss_dssp BCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHC--TTEECCTTSTTCCCSSCCHHHHHHHTTSCCCGG-GC
T ss_pred CchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcC--CCcccCccccCcccccccccccccccccccccc-cc
Confidence 5788889986 7899999997 88999999999999999975 3576664321111 1110 01234 43 35
Q ss_pred CChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChH
Q 040489 125 YGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDES 203 (413)
Q Consensus 125 ~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~ 203 (413)
+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|... .+ .++|+.+.+ ..+++++|+.+ ||.+.++.
T Consensus 99 ~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~---~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~ 171 (413)
T 2z36_A 99 DGAEHSAARRPVI-GEFTVKRLAALRPRIQDIVDHFIDDMLAT--DQ---RPVDLVQALSLPVPSLVICEL-LGVPYTDH 171 (413)
T ss_dssp CHHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTTC--SC---SSEEHHHHTTTHHHHHHHHHH-HTCCGGGH
T ss_pred CchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHh--cC---CCccHHHHHhhhhHHHHHHHH-hCCCHHHH
Confidence 7999999999875 78999999999999999999999988642 12 579988665 46899999994 99876432
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHH
Q 040489 204 QIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVD 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld 283 (413)
..+.. ....+.. . ..| ++..+..+.+.+++.++++++++.. ..|+++
T Consensus 172 --~~~~~----~~~~~~~--~--~~~-----------~~~~~~~~~~~~~~~~~i~~r~~~~------------~~dll~ 218 (413)
T 2z36_A 172 --DFFQS----RTTMMVS--R--TSM-----------EDRRRAFAELRAYIDDLITRKESEP------------GDDLFS 218 (413)
T ss_dssp --HHHHH----HHHHTTC--S--SCH-----------HHHHHHHHHHHHHHHHHHHHHHSSC------------CSSHHH
T ss_pred --HHHHH----HHHHHhc--c--cCc-----------HHHHHHHHHHHHHHHHHHHHHHhCC------------CCCHHH
Confidence 12211 1111111 0 001 2333455566777778887765321 127999
Q ss_pred HHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHh
Q 040489 284 TLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFI 363 (413)
Q Consensus 284 ~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~av 363 (413)
.|++.. +++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ .|++||
T Consensus 219 ~ll~~~--~~~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E~---------------~~l~a~ 281 (413)
T 2z36_A 219 RQIARQ--RQEGTLDHAGLVSLAFLLLTAGHETTANMISLGVVGLLSHPEQLTVVKANP---------------GRTPMA 281 (413)
T ss_dssp HHHHHH--HHHSCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHHHHCG---------------GGHHHH
T ss_pred HHHHhh--cCCCCCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhCHHHHHHHHhCh---------------HHHHHH
Confidence 998753 234569999999999999999999999999999999999999999999985 289999
Q ss_pred hhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 364 CIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 364 ikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+|+||+|||+|+.++|.+. ++.+ .+...+++++|..+.+++-|
T Consensus 282 i~E~lRl~p~~~~~~~R~~~~d~~~-----~G~~Ip~Gt~V~~~~~~~~r 326 (413)
T 2z36_A 282 VEELLRYFTIADGVTSRLATEDVEI-----GGVSIKAGEGVIVSMLSANW 326 (413)
T ss_dssp HHHHHHHHCTTTTCEEEEECSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HHHHHHhCCCcccceeeeeCCCEEE-----CCEEECCCCEEEEChHhhcC
Confidence 99999999999977788665 3333 47888999999888887765
No 52
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=100.00 E-value=2.1e-34 Score=280.21 Aligned_cols=296 Identities=16% Similarity=0.123 Sum_probs=215.9
Q ss_pred CchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCC---cccccCCCcceEeccCChhHHH
Q 040489 55 EIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPT---SKIVSSNQHNISSASYGTTWRL 131 (413)
Q Consensus 55 ~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~---~~~~~~~~~~i~~~~~g~~w~~ 131 (413)
+++.++.++ ++||||+++++|+.++++++||+.++++|.+. ..|.+++..... ..+....+.++ +..+|+.|++
T Consensus 14 ~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~h~~ 90 (404)
T 3ejb_B 14 NPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMM-LFQNQPDHRR 90 (404)
T ss_dssp CHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSG-GGCCTTHHHH
T ss_pred CchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcch-hhcCCchHHH
Confidence 567888887 68999999999999999999999999999865 567666532111 01111011234 3457999999
Q ss_pred HHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHH-HHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 040489 132 FRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDH-FQYAMFCLLVLMCFGDKLDESQIKKIEN 210 (413)
Q Consensus 132 ~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~~~ 210 (413)
+||.+. +.|++..++.+.+.+.+.++.+++.|.. + ..+|+... ...+++++++.+ ||.+.++. ..+..
T Consensus 91 ~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~---~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~--~~~~~ 159 (404)
T 3ejb_B 91 LRTLAS-GAFTPRTTESYQPYIIETVHHLLDQVQG----K---KKMEVISDFAFPLASFVIANI-IGVPEEDR--EQLKE 159 (404)
T ss_dssp HHHHHH-GGGSHHHHHTTHHHHHHHHHHHHHTTTT----T---SEEEHHHHTHHHHHHHHHHHH-HTCCGGGH--HHHHH
T ss_pred HHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhhh----c---CCcchHHHHHHHHHHHHHHHH-cCCCHHHH--HHHHH
Confidence 999875 8899999999999999999999887753 2 46887655 456899999984 89876432 22222
Q ss_pred HHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccC
Q 040489 211 VQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~ 290 (413)
....+...+. .|.. ...+++..+..+.+.+++.++++++++.. ..|+++.|+ ...
T Consensus 160 ~~~~~~~~~~-------~p~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~~------------~~d~l~~ll-~~~ 214 (404)
T 3ejb_B 160 WAASLIQTID-------FTRS-----RKALTEGNIMAVQAMAYFKELIQKRKRHP------------QQDMISMLL-KGR 214 (404)
T ss_dssp HHHHHHGGGS-------TTCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHSC------------CSSHHHHHH-HC-
T ss_pred HHHHHHHhcc-------CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------cchHHHHHH-hcc
Confidence 2222211111 1221 11234445566677778888887765321 127999999 332
Q ss_pred CcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccccc
Q 040489 291 PEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRI 370 (413)
Q Consensus 291 ~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl 370 (413)
++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|+||+
T Consensus 215 --~~~~ls~~el~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~i~E~lRl 277 (404)
T 3ejb_B 215 --EKDKLTEEEAASTCILLAIAGHETTVNLISNSVLCLLQHPEQLLKLRENPD---------------LIGTAVEECLRY 277 (404)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCGG---------------GHHHHHHHHHHH
T ss_pred --cCCCCCHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHCHHHHHHHHhCHH---------------HHHHHHHHHHHh
Confidence 345699999999999999999999999999999999999999999999863 899999999999
Q ss_pred cCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 371 HMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 371 ~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||+| .++|.+. ++.+ .+.+.+++++|..+.+++-|
T Consensus 278 ~p~~~-~~~R~~~~d~~~-----~g~~ip~Gt~v~~~~~~~~r 314 (404)
T 3ejb_B 278 ESPTQ-MTARVASEDIDI-----CGVTIRQGEQVYLLLGAANR 314 (404)
T ss_dssp SCSBC-EEEEEESSCEEE-----TTEEECTTCEEEEEHHHHTT
T ss_pred CCccc-ccceEeCCCeEE-----CCEEECCCCEEEecHHHhCC
Confidence 99999 5677654 4433 57888999999888887755
No 53
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=100.00 E-value=8e-35 Score=283.44 Aligned_cols=291 Identities=14% Similarity=0.105 Sum_probs=212.2
Q ss_pred CCchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcc--cccC----CCcceEeccCC
Q 040489 54 SEIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSK--IVSS----NQHNISSASYG 126 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~--~~~~----~~~~i~~~~~g 126 (413)
.+++..+.+| ++||||+++++ |+.++++++||+.+++||.++ .|.+++....... .+.. ...++. ..+|
T Consensus 24 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g 99 (408)
T 3abb_A 24 YQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP--RLSSDWGHPDFPVVVRRTEDRGGLAFPLI-GVDD 99 (408)
T ss_dssp TSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT--TEECCTTSTTCCCCC---------CCTTT-TCCT
T ss_pred cCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC--CcccccccccccccccCCccccccccccc-cCCc
Confidence 3578889999 99999999997 888999999999999999754 3444332010100 0110 112343 3589
Q ss_pred hhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHH-HHHHHHHHHHHhcCCCChHHH
Q 040489 127 TTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQ-YAMFCLLVLMCFGDKLDESQI 205 (413)
Q Consensus 127 ~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~vi~~~~fG~~~~~~~~ 205 (413)
+.|+++||.+. +.|++..++.+.+.+++.++.+++.|.. .| .++|+.+.+. .+++++|+. +||.+.++.
T Consensus 100 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g---~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~-- 169 (408)
T 3abb_A 100 PVHARQRRMLI-PSFGVKRMNAIRPRLQSLVDRLLDDMLA---KG---PGADLVSAFALPVPSVAICE-LLGVPYGDH-- 169 (408)
T ss_dssp THHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH---TC---SCEEHHHHTTTHHHHHHHHH-HHTCCGGGH--
T ss_pred hHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh---cC---CCeehHHHHHHHHHHHHHHH-HhCCCHHHH--
Confidence 99999999875 7899999999999999999999999874 23 5799988875 588999997 799876432
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHH
Q 040489 206 KKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTL 285 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~l 285 (413)
..+......+ .. .. .+ ++..+..+.+.+++.++++++++.. + .|+++.|
T Consensus 170 ~~~~~~~~~~----~~--~~--~~-----------~~~~~~~~~~~~~~~~~i~~r~~~~---------~---~d~l~~l 218 (408)
T 3abb_A 170 DFFEECSRNF----VG--AA--TS-----------AEADAAFGELYTYLHGLVGRKQAEP---------E---DGLLDEL 218 (408)
T ss_dssp HHHHHHHHHH----C---------------------CCSSHHHHHHHHHHHHHHHHHHSC---------C---SSHHHHH
T ss_pred HHHHHHHHHH----hc--cc--ch-----------HHHHHHHHHHHHHHHHHHHHHHhCC---------C---CCHHHHH
Confidence 2222211111 11 00 01 1111233445667777777665321 1 2799999
Q ss_pred HhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhh
Q 040489 286 LDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICI 365 (413)
Q Consensus 286 l~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avik 365 (413)
++... ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+
T Consensus 219 l~~~~--~~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e~~---------------~l~a~i~ 281 (408)
T 3abb_A 219 IARQL--EEGDLDHDEVVMIALVLLVAGHETTVNAIALGALTLIQHPEQIDVLLRDPG---------------AVSGVVE 281 (408)
T ss_dssp HHHHH--TSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGGGGGGSCHH---------------HHHHHHH
T ss_pred Hhccc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhCHH---------------hHHHHHH
Confidence 87542 244699999999999999999999999999999999999999999998753 8999999
Q ss_pred ccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 366 PDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 366 EtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+||+|||+| .++|.+. ++.+ .+.+.+++++|..+.+++-|
T Consensus 282 E~lRl~p~~~-~~~R~~~~d~~~-----~G~~Ip~Gt~V~~~~~~~~r 323 (408)
T 3abb_A 282 ELLRFTSVSD-HIVRMAKEDIEV-----GGATIKAGDAVLVSITLMNR 323 (408)
T ss_dssp HHHHHHCSSC-EEEEEESSCEEE-----TTEEECTTCEEEEEHHHHHT
T ss_pred HHHHhcCccc-ccceEeCCCeEE-----CCEEECCCCEEEeChHHhcC
Confidence 9999999999 6777664 3333 57889999999998888765
No 54
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=100.00 E-value=3.8e-34 Score=282.05 Aligned_cols=305 Identities=11% Similarity=0.048 Sum_probs=219.9
Q ss_pred chHHHHHHHhhcCCeE--EEE-cCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCccccc---------C---CCcce
Q 040489 56 IEPILRNLHSKLGPVV--TLF-IGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVS---------S---NQHNI 120 (413)
Q Consensus 56 ~~~~~~~~~~kyG~i~--~~~-~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~---------~---~~~~i 120 (413)
++.++.++ ++||||+ ++. +|+.++++|++++++++++.+. ..|.+++.......... . ...++
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 77888888 7899999 887 7888999999999999999654 67877764322111100 0 01233
Q ss_pred EeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCC
Q 040489 121 SSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDK 199 (413)
Q Consensus 121 ~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~ 199 (413)
+..+|+.|+++||.+. +.|++..++.+.+.+++.++.+++.|... + .++|+.+.+ ..+++++|+.+ ||.+
T Consensus 125 -~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~---~---~~~dl~~~~~~~~~~~vi~~l-~G~~ 195 (450)
T 3tkt_A 125 -VQMDAPKHPKLRRLTQ-DWFMPKNLARLDGEIRKIANEAIDRMLGA---G---EEGDFMALVAAPYPLHVVMQI-LGVP 195 (450)
T ss_dssp -GGCCTTHHHHHHHHHH-TTTSHHHHGGGHHHHHHHHHHHHHHHHHT---C---SEEEHHHHTTTHHHHHHHHHH-TTCC
T ss_pred -ccCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc---C---CCEeeHHHHHHHHHHHHHHHH-cCCC
Confidence 3457999999999865 89999999999999999999999998752 2 579988877 68999999995 9976
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCcccccccccchhh-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 040489 200 LDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIV-FVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYV 278 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~ 278 (413)
.++ ...+...... +.......+.+++..+. +.+..++..+..+.+.+++.++++++++.. .
T Consensus 196 ~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~---------~--- 257 (450)
T 3tkt_A 196 PED--EPKMLFLTQQ----MFGGQDEDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRRNP---------T--- 257 (450)
T ss_dssp GGG--HHHHHHHHHT----TSCCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHSC---------C---
T ss_pred hhH--HHHHHHHHHH----HhccccchhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCC---------C---
Confidence 532 2222222111 11111111122111100 112234555666777788888888765421 1
Q ss_pred hhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCCh
Q 040489 279 LSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVP 358 (413)
Q Consensus 279 ~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lp 358 (413)
.|+++.|++... ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ +
T Consensus 258 ~dll~~ll~~~~--~~~~ls~~ei~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~~l~~E~---------------~ 320 (450)
T 3tkt_A 258 DDVATVIANAVV--DGEPMSDRDTAGYYIITASAGHDTTSASSAGAALALARDPDLFARVKADR---------------N 320 (450)
T ss_dssp SSHHHHHHTCEE--TTEECCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHCG---------------G
T ss_pred CCHHHHHHhccc--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHCH---------------H
Confidence 279999998653 34469999999999999999999999999999999999999999999985 3
Q ss_pred hHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 359 LFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 359 yl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+.|||+|+||++||++ .++|.+. ++.+ .+...++++.|..+.+++-|
T Consensus 321 ~l~a~i~E~LRl~pp~~-~~~R~~~~d~~l-----~G~~Ip~G~~V~~~~~~~~r 369 (450)
T 3tkt_A 321 LLPGIVEEAIRWTTPVQ-HFMRTAATDTEL-----CGQKIAAGDWLMLNYVAANH 369 (450)
T ss_dssp GHHHHHHHHHHHHCSBC-EEEEEESSSEEE-----TTEEECTTCEEEEEHHHHHT
T ss_pred HHHHHHHHHHHhCCCcc-CcceeeCCCeeE-----CCEEECCCCEEEEChHHhcC
Confidence 89999999999999999 4666554 4443 56888899999888887655
No 55
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=100.00 E-value=1.6e-34 Score=281.02 Aligned_cols=292 Identities=16% Similarity=0.117 Sum_probs=217.6
Q ss_pred CCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCC--C----CCc--ccc-cC----CCcce
Q 040489 54 SEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRP--L----PTS--KIV-SS----NQHNI 120 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~--~----~~~--~~~-~~----~~~~i 120 (413)
.+++.++.++ ++||||+++++|+.++++++||+.+++++.++ .|.+++.. . ... ..+ .. .+.++
T Consensus 14 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (404)
T 1z8o_A 14 VDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATNM 90 (404)
T ss_dssp SSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSSG
T ss_pred cCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhccccc
Confidence 3578889999 99999999999999999999999999999765 57666432 1 000 011 10 12344
Q ss_pred EeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCC
Q 040489 121 SSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDK 199 (413)
Q Consensus 121 ~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~ 199 (413)
. ..+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|.. + .++|+.+.+ ..+++++|+. +||.+
T Consensus 91 ~-~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~---~~~d~~~~~~~~~~~~vi~~-~~G~~ 160 (404)
T 1z8o_A 91 G-TSDPPTHTRLRKLVS-QEFTVRRVEAMRPRVEQITAELLDEVGD----S---GVVDIVDRFAHPLPIKVICE-LLGVD 160 (404)
T ss_dssp G-GCCTTHHHHHHHHHH-TTSCHHHHHHTHHHHHHHHHHHHHTSCS----S---SEEEHHHHTTTHHHHHHHHH-HTTCC
T ss_pred c-cCCCcHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhhhh----c---CCcchHHHHhHHHHHHHHHH-HhCCC
Confidence 3 357999999999875 7899999999999999999998887642 2 579988665 6899999998 49987
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 040489 200 LDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVL 279 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~ 279 (413)
.++. ..+......+.. . . .|. +++..+..+.+.+++.++++++++.. . .
T Consensus 161 ~~~~--~~~~~~~~~~~~----~---~-~p~---------~~~~~~~~~~~~~~~~~~i~~r~~~~---------~---~ 209 (404)
T 1z8o_A 161 EKYR--GEFGRWSSEILV----M---D-PER---------AEQRGQAAREVVNFILDLVERRRTEP---------G---D 209 (404)
T ss_dssp GGGT--TTHHHHHHHHHC----C---C-GGG---------HHHHHHHHHHHHHHHHHHHHHHHHSC---------C---S
T ss_pred HHHH--HHHHHHHHHHhc----c---C-Chh---------HHHHHHHHHHHHHHHHHHHHHHHhCC---------C---C
Confidence 6431 112222111111 0 0 111 23444556667778888887765421 1 2
Q ss_pred hHHHHHHhc-cCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCCh
Q 040489 280 SYVDTLLDL-QLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVP 358 (413)
Q Consensus 280 ~~ld~ll~~-~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lp 358 (413)
|+++.|++. .. ++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ .
T Consensus 210 dll~~ll~~~~~--~~~~l~~~ei~~~~~~~~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E~---------------~ 272 (404)
T 1z8o_A 210 DLLSALIRVQDD--DDGRLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDQLALVRRDP---------------S 272 (404)
T ss_dssp SHHHHHHHCEET--TTEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCG---------------G
T ss_pred CHHHHHHhhhcc--cCCCCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCHHHHHHHHhCH---------------H
Confidence 799999986 42 33459999999999999999999999999999999999999999999985 2
Q ss_pred hHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 359 LFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 359 yl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|++|||+|+||+|||+| .++|.+. ++.+ .+.+.+++++|..+.+++-|
T Consensus 273 ~l~a~i~E~lRl~p~~~-~~~R~~~~d~~l-----~g~~Ip~Gt~V~~~~~~~~r 321 (404)
T 1z8o_A 273 ALPNAVEEILRYIAPPE-TTTRFAAEEVEI-----GGVAIPQYSTVLVANGAANR 321 (404)
T ss_dssp GHHHHHHHHHHHTCSSC-CEEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred hHHHHHHHHHHhcCCcc-CcceEECCCEEE-----CCEEECCCCEEEecchhhcC
Confidence 89999999999999999 6777664 3333 46888999999888887765
No 56
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=100.00 E-value=1.4e-34 Score=282.14 Aligned_cols=295 Identities=12% Similarity=0.075 Sum_probs=214.8
Q ss_pred CCchHHHHHHHhhcCCeE-----EEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCC-CCc-ccc-c-CCCcceEecc
Q 040489 54 SEIEPILRNLHSKLGPVV-----TLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPL-PTS-KIV-S-SNQHNISSAS 124 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~-----~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~-~~~-~~~-~-~~~~~i~~~~ 124 (413)
.+++.++.++ ++||||+ ++++ .++++++||+.+++|+.++ ..|.+++... ... ..+ + ..+.++.+ .
T Consensus 25 ~~p~~~~~~l-~~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 99 (414)
T 2uuq_A 25 PNPWPMYRAL-RDHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVM-Q 99 (414)
T ss_dssp TCCHHHHHHH-HHHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGG-C
T ss_pred cCchHHHHHH-HhcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCccccccccccccccc-C
Confidence 3678888888 5799999 7766 6789999999999999865 5687765321 111 122 2 11234533 5
Q ss_pred CChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchH-HHHHHHHHHHHHHHHhcCCCChH
Q 040489 125 YGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVL-DHFQYAMFCLLVLMCFGDKLDES 203 (413)
Q Consensus 125 ~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~-~~~~~~~~~vi~~~~fG~~~~~~ 203 (413)
+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|... .++|+. +.+..+++++|+. +||.+.++.
T Consensus 100 ~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-------~~vdl~~~~~~~~~~~vi~~-~~G~~~~~~ 170 (414)
T 2uuq_A 100 DPPVHTEFRKLVS-RGFTPRQVETVEPTVRKFVVERLEKLRAN-------GGGDIVTELFKPLPSMVVAH-YLGVPEEDW 170 (414)
T ss_dssp CTTHHHHHHHHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHT-------TEEEHHHHTTTHHHHHHHHH-HTTCCGGGH
T ss_pred CchhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc-------CCccHHHHHHHHhHHHHHHH-HhCCCHHHH
Confidence 7999999999875 88999999999999999999999998752 358986 5567999999999 699987532
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccc-cccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHH
Q 040489 204 QIKKIENVQRTQLLAFGNFNILNFW-PRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYV 282 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~l 282 (413)
..+......+... .++ |... +..+..+.+.+++.++++++++.. ..|++
T Consensus 171 --~~~~~~~~~~~~~-------~~~~p~~~---------~~~~~~~~~~~~~~~~i~~r~~~~------------~~dll 220 (414)
T 2uuq_A 171 --TQFDGWTQAIVAA-------NAVDGATT---------GALDAVGSMMAYFTGLIERRRTEP------------ADDAI 220 (414)
T ss_dssp --HHHHHHHHHHHHH-------HHC--------------CCHHHHHHHHHHHHHHHHHHTTSC------------CSSHH
T ss_pred --HHHHHHHHHHHhh-------cccCCchh---------HHHHHHHHHHHHHHHHHHHHHhCC------------CCCHH
Confidence 2222222222111 011 2110 112334456667777777664321 12799
Q ss_pred HHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHH
Q 040489 283 DTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLF 362 (413)
Q Consensus 283 d~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~a 362 (413)
+.|++...++++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ +|++|
T Consensus 221 ~~ll~~~~~~~~~~ls~~ei~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~E~---------------~~l~a 285 (414)
T 2uuq_A 221 SHLVAAGVGADGDTAGTLSILAFTFTMVTGGNDTVTGMLGGSMPLLHRRPDQRRLLLDDP---------------EGIPD 285 (414)
T ss_dssp HHHHHTTTTCTTCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHHHHCG---------------GGHHH
T ss_pred HHHHhcccccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHhCH---------------HHHHH
Confidence 999986431133458999999999999999999999999999999999999999999986 39999
Q ss_pred hhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 363 ICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 363 vikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
||+|+||+|||+| .++|.+.+ +-+-.+...++++.|..+.+++-|
T Consensus 286 ~i~E~lRl~p~~~-~~~R~~~~----d~~l~G~~Ip~Gt~V~~~~~~~~r 330 (414)
T 2uuq_A 286 AVEELLRLTSPVQ-GLARTTTR----DVTIGDTTIPAGRRVLLLYGSANR 330 (414)
T ss_dssp HHHHHHHHHCSBC-CEEEEESS----CEEETTEEECTTCEEEECHHHHTT
T ss_pred HHHHHHHhCCCcC-CcceEECC----CEEECCEEECCCCEEEeChhhhCC
Confidence 9999999999999 67776643 222357888999999988887765
No 57
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=100.00 E-value=1.3e-34 Score=281.01 Aligned_cols=289 Identities=10% Similarity=0.029 Sum_probs=215.5
Q ss_pred CCchHHHHHHHhhc--CCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcccccCCCcceEeccCChhHHH
Q 040489 54 SEIEPILRNLHSKL--GPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVSSNQHNISSASYGTTWRL 131 (413)
Q Consensus 54 ~~~~~~~~~~~~ky--G~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~ 131 (413)
.+++.++.+|+++| |||+++++|+ +.++++||+.+++|+. +.+.|.+++....... ...+..++ +..+|+.|++
T Consensus 19 ~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~-~~~~~~~~-~~~~g~~~~~ 94 (398)
T 4fb2_A 19 GTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVIQ-NTKAFSNKGVTFPRYE-TGEFELMM-AGQDDPVHKK 94 (398)
T ss_dssp SSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHHT-CCSSEEGGGCSSSCC-----CCCTT-TTCCTTHHHH
T ss_pred cChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHHh-ChhhccCCcccccCCC-CcccccCc-ccCCchHHHH
Confidence 46789999999999 9999998875 5899999999999994 4557877654322111 11112222 3468999999
Q ss_pred HHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHH-HHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 040489 132 FRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDH-FQYAMFCLLVLMCFGDKLDESQIKKIEN 210 (413)
Q Consensus 132 ~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~~~ 210 (413)
+||.+. +.|++..++.+.+.+.+.++.+++.|.. . ..+|+... ...+++++++. +||.+.++ ...+..
T Consensus 95 ~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~---~----~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~~~~~ 163 (398)
T 4fb2_A 95 YRQLVA-KPFSPEATDLFTEQLRQSTNDLIDARIE---L----GEGDAATWLANEIPARLTAI-LLGLPPED--GDTYRR 163 (398)
T ss_dssp HHHHHH-TTTCHHHHHTTHHHHHHHHHHHHHTTTT---T----TEEEHCCCCCTTHHHHHHHH-HTTSCGGG--HHHHHH
T ss_pred HHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhh---c----CCccHHHHHHHHHHHHHHHH-HcCCCHHH--HHHHHH
Confidence 999875 8899999999999999999998887653 1 35776544 46899999999 79987533 222222
Q ss_pred HHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccC
Q 040489 211 VQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQL 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~ 290 (413)
....+.. +.. .++..+..+.+.+++.++++++++.. ..|+++.|++...
T Consensus 164 ~~~~~~~-----------~~~--------~~~~~~~~~~~~~~~~~~i~~r~~~~------------~~d~l~~ll~~~~ 212 (398)
T 4fb2_A 164 WVWAITH-----------VEN--------PEEGAEIFAELVAHARTLIAERRTNP------------GNDIMSRVIMSKI 212 (398)
T ss_dssp HHHHHHH-----------CCC--------HHHHHHHHHHHHHHHHHHHHHHHHSC------------CSSHHHHHHHCCB
T ss_pred HHHHHhc-----------CCC--------HHHHHHHHHHHHHHHHHHHHHHHhCC------------CCCHHHHHHHccc
Confidence 2222211 100 12334455667777888888775421 1289999998653
Q ss_pred CcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccccc
Q 040489 291 PEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRI 370 (413)
Q Consensus 291 ~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl 370 (413)
++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|+||+
T Consensus 213 --~~~~l~~~~i~~~~~~l~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~i~E~lRl 275 (398)
T 4fb2_A 213 --DGESLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWDIELRRRLIAHPE---------------LIPNAVDELLRF 275 (398)
T ss_dssp --TTBCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCGG---------------GHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHhCHH---------------HHHHHHHHHHHh
Confidence 345699999999999999999999999999999999999999999999964 789999999999
Q ss_pred cCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 371 HMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 371 ~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|||+| ++|.+. ++.+ .+.+.++|++|..+.+++-|
T Consensus 276 ~p~~~--~~R~~~~d~~l-----~g~~Ip~Gt~V~~~~~~~~r 311 (398)
T 4fb2_A 276 YGPAM--VGRLVTQEVTV-----GDITMKPGQTAMLWFPIASR 311 (398)
T ss_dssp HCCBC--EEEEECSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred CCCcC--CCeeeCCCEEE-----CCEEECCCCEEEechHhhcC
Confidence 99999 566554 4444 56888999999888877655
No 58
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=100.00 E-value=6.8e-34 Score=277.05 Aligned_cols=293 Identities=15% Similarity=0.170 Sum_probs=216.1
Q ss_pred CCchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccccCCCCCC------Cc---ccccC-C-CcceE
Q 040489 54 SEIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFADRPRPLP------TS---KIVSS-N-QHNIS 121 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~------~~---~~~~~-~-~~~i~ 121 (413)
.+++..+.++ ++||||+++++ |+.++++++||+++++||.++. +.+++.... .. .+++. . ..++
T Consensus 17 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 92 (411)
T 1gwi_A 17 TDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRSM- 92 (411)
T ss_dssp SCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSSG-
T ss_pred CChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccccc-
Confidence 3578889999 99999999997 8899999999999999997543 333320000 00 01100 1 1234
Q ss_pred eccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHH-HHHHHHHHHHHhcCCC
Q 040489 122 SASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQ-YAMFCLLVLMCFGDKL 200 (413)
Q Consensus 122 ~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~vi~~~~fG~~~ 200 (413)
+..+|+.|+++||.+. +.|++..++.+.+.+++.++.+++.|.. .+ .++|+.+.+. .+++++|+. +||.+.
T Consensus 93 ~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~---~~~d~~~~~~~~~~~~vi~~-~~G~~~ 164 (411)
T 1gwi_A 93 LTVDGAEHRRLRTLVA-QALTVRRVEHMRGRITELTDRLLDELPA---DG---GVVDLKAAFAYPLPMYVVAD-LMGIEE 164 (411)
T ss_dssp GGCCHHHHHHHHHHHT-TTSCHHHHHTTHHHHHHHHHHHHHTSCC---SC---CCEEHHHHTTTHHHHHHHHH-HHTCCG
T ss_pred ccCCcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHH---cC---CCcchHHHHhhHHHHHHHHH-HhCCCH
Confidence 3458999999999875 8899999999999999999999887752 23 5799988875 599999996 799876
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 040489 201 DESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLS 280 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~ 280 (413)
++. ..+......++. .. .+ .++..+..+.+.+++.++++++++.. . .|
T Consensus 165 ~~~--~~~~~~~~~~~~----~~----~~----------~~~~~~~~~~~~~~~~~~i~~r~~~~--------~----~d 212 (411)
T 1gwi_A 165 ARL--PRLKVLFEKFFS----TQ----TP----------PEEVVATLTELASIMTDTVAAKRAAP--------G----DD 212 (411)
T ss_dssp GGH--HHHHHHHHHHHC----TT----SC----------HHHHHHHHHHHHHHHHHHHHHHHHSC--------C----SS
T ss_pred HHH--HHHHHHHHHHhc----cC----CC----------hHHHHHHHHHHHHHHHHHHHHHHhCC--------C----CC
Confidence 431 222222221111 00 00 12334455667777888887765321 1 27
Q ss_pred HHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhH
Q 040489 281 YVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLF 360 (413)
Q Consensus 281 ~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl 360 (413)
+++.|++... ++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ +|+
T Consensus 213 ~l~~ll~~~~--~~~~l~~~~i~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e~---------------~~l 275 (411)
T 1gwi_A 213 LTSALIQASE--NGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTHPEQRALVLSGE---------------AEW 275 (411)
T ss_dssp HHHHHHHCCB--TTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTS---------------SCH
T ss_pred HHHHHHHhcc--cCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhChHHHHHHHcCh---------------HHH
Confidence 9999998642 34569999999999999999999999999999999999999999999863 389
Q ss_pred HHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 361 LFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 361 ~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+|||+|+||+|||+|+.++|.+. ++.+ .+.+.++++.|..+.+++-|
T Consensus 276 ~a~i~E~lRl~p~~~~~~~R~~~~d~~~-----~G~~Ip~Gt~V~~~~~~~~r 323 (411)
T 1gwi_A 276 SAVVEETLRFSTPTSHVLIRFAAEDVPV-----GDRVIPAGDALIVSYGALGR 323 (411)
T ss_dssp HHHHHHHHHHSCSBCCEEEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HHHHHHHHHhCCcccCCceeeeCCCeEE-----CCEEECCCCEEEecHHHhcC
Confidence 99999999999999987788664 3333 47889999999988887765
No 59
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=100.00 E-value=2.7e-33 Score=272.05 Aligned_cols=284 Identities=14% Similarity=0.149 Sum_probs=212.3
Q ss_pred CchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccccCCCCCC-CcccccCCCcc--eEeccCC----
Q 040489 55 EIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFADRPRPLP-TSKIVSSNQHN--ISSASYG---- 126 (413)
Q Consensus 55 ~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~-~~~~~~~~~~~--i~~~~~g---- 126 (413)
+++.++.++ ++||||+++++ |+.++++++||+++++|+.++ .|.+++.... ...... +.+ +.+ .+|
T Consensus 27 ~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~--~~~~~l~~-~~g~~~~ 100 (404)
T 2xbk_A 27 KLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVR--SPFLDLLI-SDADAES 100 (404)
T ss_dssp BCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSC--CHHHHTTC-BCSCHHH
T ss_pred CccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcccc--ccccccee-eCCCCCC
Confidence 467889999 89999999997 889999999999999999653 4665543211 111111 223 433 579
Q ss_pred --hhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChH
Q 040489 127 --TTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDES 203 (413)
Q Consensus 127 --~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~ 203 (413)
+.|+++||.+. +.|++..++.+.+.+++.++.+++.|.. .| .++|+.+.+ ..+++++|+. +||.+.++.
T Consensus 101 ~~~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~g---~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~ 172 (404)
T 2xbk_A 101 GRRQHAETRRLLT-PLFSARRVLEMQPKVEEAADTLLDAFIA---QG---PPGDLHGELTVPFALTVLCE-VIGVPPQRR 172 (404)
T ss_dssp HHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH---TC---SSEEHHHHTHHHHHHHHHHH-HHTCCGGGH
T ss_pred CCchHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh---cC---CCeeHHHHHHHHHHHHHHHH-HhCCCHHHH
Confidence 99999999875 7899999999999999999999999874 23 579988765 5789999997 799876432
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHH
Q 040489 204 QIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVD 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld 283 (413)
..+..... .+.. .. .| + +..+..+.+.+++.++++++++.. . .|+++
T Consensus 173 --~~~~~~~~----~~~~--~~--~~--------p---~~~~~~~~~~~~~~~~i~~r~~~~---------~---~dll~ 219 (404)
T 2xbk_A 173 --AELTTLLA----GIAK--LD--DR--------E---GAVRAQDDLFGYVAGLVEHKRAEP---------G---PDIIS 219 (404)
T ss_dssp --HHHHHHHH----HHTB--SS--CH--------H---HHHHHHHHHHHHHHHHHHHHHHSC---------C---SSHHH
T ss_pred --HHHHHHHH----HHHh--cc--Cc--------H---HHHHHHHHHHHHHHHHHHHHHhCC---------C---CCHHH
Confidence 12222111 1111 00 00 0 233445566777778887765421 1 27888
Q ss_pred HHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHh
Q 040489 284 TLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFI 363 (413)
Q Consensus 284 ~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~av 363 (413)
.| + ++ .+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++||
T Consensus 220 ~l-~-----~~-~ls~~ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~ 277 (404)
T 2xbk_A 220 RL-N-----DG-ELTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAHPDQRAAALADPD---------------VMARA 277 (404)
T ss_dssp HH-H-----SS-SCCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCHHHHHHHHHCHH---------------HHHHH
T ss_pred Hh-h-----cC-CCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHhCHH---------------HHHHH
Confidence 87 2 23 699999999999999999999999999999999999999999999963 89999
Q ss_pred hhccccccCCCC-CCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 364 CIPDLRIHMHLS-LDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 364 ikEtlRl~pp~~-~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+|+||++||+| +.++|.+. ++.+ .+.+.+++++|..+.+++-|
T Consensus 278 i~E~lRl~p~~~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 323 (404)
T 2xbk_A 278 VEEVLRTARAGGSVLPPRYASEDMEF-----GGVTIRAGDLVLFDLGLPNF 323 (404)
T ss_dssp HHHHHHHSCSSCCBCSCEEESSCEEE-----TTEEECTTCEEECBTHHHHT
T ss_pred HHHHHHhCCCccccccceeECCCeeE-----CCEEECCCCEEEeChHHhcC
Confidence 999999999999 56777664 3433 47888999999888887755
No 60
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=100.00 E-value=1.4e-33 Score=274.73 Aligned_cols=292 Identities=12% Similarity=0.079 Sum_probs=213.8
Q ss_pred cCCchHHHHHHHhhcCCeEEEEcCC--ccEEEEeChHHHHHHHHhcCcccccCCCCC----CCcccccCCCcceEeccCC
Q 040489 53 FSEIEPILRNLHSKLGPVVTLFIGP--RPAIFIADRSLAHKALVQNGAIFADRPRPL----PTSKIVSSNQHNISSASYG 126 (413)
Q Consensus 53 ~~~~~~~~~~~~~kyG~i~~~~~g~--~~~v~i~dpe~i~~il~~~~~~f~~r~~~~----~~~~~~~~~~~~i~~~~~g 126 (413)
.+++|.++.+++ +||||+++++++ .+.+++++|+.+++||.+ ..|.+++... ....+.+..+.++. ..+|
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l~-~~dg 101 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSLA-FADQ 101 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCST-TCCT
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhccccccc-cCCc
Confidence 345678888887 899999998764 789999999999999965 3565543211 01111110023443 4589
Q ss_pred hhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHH-HHHHHHHHHHHhcCCCChHHH
Q 040489 127 TTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQ-YAMFCLLVLMCFGDKLDESQI 205 (413)
Q Consensus 127 ~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~vi~~~~fG~~~~~~~~ 205 (413)
+.|+++||.+. +.|+++.++.+.+.+.+.++.+++.|... | .++|+.+.+. .+++++|+. +||.+.++.
T Consensus 102 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g---~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~-- 171 (411)
T 2dkk_A 102 PDHNRLRRAVA-GAFTVGATKRLRPRAQEILDGLVDGILAE---G---PPADLVERVLEPFPIAVVSE-VMGVPAADR-- 171 (411)
T ss_dssp THHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHH---C---SCEEHHHHTTTHHHHHHHHH-HHTCCSSHH--
T ss_pred hHHHHHHHHhh-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc---C---CCeehHHHHHHHHHHHHHHH-HhCCCHHHH--
Confidence 99999999875 78999999999999999999999999752 2 4799987775 799999998 599987532
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHH
Q 040489 206 KKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTL 285 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~l 285 (413)
..+. .....+.. ..+ .+++..+..+.+.+++.++++++++.. . .|+++.|
T Consensus 172 ~~~~----~~~~~~~~-----~~~---------~~~~~~~~~~~l~~~~~~~i~~r~~~~---------~---~dll~~l 221 (411)
T 2dkk_A 172 ERVH----SWTRQIIS-----TSG---------GAEAAERAKRGLYGWITETVRARAGSE---------G---GDVYSML 221 (411)
T ss_dssp HHHH----HHHGGGCS-----SCS---------CSHHHHHHHHHHHHHHHHHHHTTTTCC---------S---SCHHHHH
T ss_pred HHHH----HHHHHHHh-----ccc---------hHHHHHHHHHHHHHHHHHHHHHHHhCC---------C---CCHHHHH
Confidence 1111 11111111 111 112334455666777777777654211 1 2799999
Q ss_pred HhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhh
Q 040489 286 LDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICI 365 (413)
Q Consensus 286 l~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avik 365 (413)
++. . ++..+|++++.+++.++++|| |||+++++|++|+|++||++|+|+++|++ |++|||+
T Consensus 222 l~~-~--~~~~ls~~el~~~~~~l~~AG-eTta~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~i~ 282 (411)
T 2dkk_A 222 GAA-V--GRGEVGETEAVGLAGPLQIGG-EAVTHNVGQMLYLLLTRRELMARMRERPG---------------ARGTALD 282 (411)
T ss_dssp HHH-H--HTTSSCTTSHHHHHHHHHHTH-HHHHHHHHHHHHHHHHSHHHHHHHHHCTT---------------CCHHHHH
T ss_pred HHh-c--CCCCCCHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhCHHHHHHHHhCHH---------------HHHHHHH
Confidence 875 2 345699999999999999999 99999999999999999999999999862 8999999
Q ss_pred ccccccCCCCCC-Ccchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 366 PDLRIHMHLSLD-DPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 366 EtlRl~pp~~~~-~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+||+|||++.. ++|.+. ++.+ .+...++++.|..+.+++-|
T Consensus 283 E~lRl~p~~~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 326 (411)
T 2dkk_A 283 ELLRWISHRTSVGLARIALEDVEV-----HGTRIAAGEPVYVSYLAANR 326 (411)
T ss_dssp HHHHHSCCBSSCCCCEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HHHhhCCccccCccceEECCCEEE-----CCEEECCCCEEEeChhhhcC
Confidence 999999999966 777664 3333 46788888888877776654
No 61
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=100.00 E-value=8.2e-34 Score=275.31 Aligned_cols=292 Identities=13% Similarity=0.068 Sum_probs=212.4
Q ss_pred CchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCC-----cccccCC-CcceEeccCChh
Q 040489 55 EIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPT-----SKIVSSN-QHNISSASYGTT 128 (413)
Q Consensus 55 ~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~-----~~~~~~~-~~~i~~~~~g~~ 128 (413)
+++.++.++ ++||||++ + +.++++++||+.+++||.+ ..|.+++..... ...+... +.++. ..+|+.
T Consensus 14 ~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~~ 86 (397)
T 3buj_A 14 DPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIIL-FQDEPD 86 (397)
T ss_dssp CCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGG-GCCTTH
T ss_pred CchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccc-cCCchh
Confidence 467777766 68999998 6 4788999999999999964 356544211000 0011110 12343 357999
Q ss_pred HHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHH-HHHHHHHHHHHHHhcCCCChHHHHH
Q 040489 129 WRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDH-FQYAMFCLLVLMCFGDKLDESQIKK 207 (413)
Q Consensus 129 w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~ 207 (413)
|+++||.+. +.|++..++.+.+.+.+.++.+++.|.. + .++|+.+. ...+++++|+.+ ||.+.++. ..
T Consensus 87 h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~---~~~dl~~~~~~~~~~~vi~~~-~G~~~~~~--~~ 155 (397)
T 3buj_A 87 HGRLRGVVG-PAFSPSALRRLEPVIAGTVDDLLRPALA----R---GAMDVVDELAYPLALRAVLGL-LGLPAADW--GA 155 (397)
T ss_dssp HHHHHHHHG-GGSSTTTTGGGHHHHHHHHHHHHHHHHT----T---TEEEHHHHTHHHHHHHHHHHH-HTCCGGGH--HH
T ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHhh----c---CCeehHHHHHHHhHHHHHHHH-hCCCHHHH--HH
Confidence 999999876 7899999999999999999999998873 2 47897654 578999999998 99987532 22
Q ss_pred HHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHh
Q 040489 208 IENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLD 287 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~ 287 (413)
+......+...+ . . + + ....+++..+..+.+.+++.++++++++.. ..|+++.|++
T Consensus 156 ~~~~~~~~~~~~---~---~-~-~----~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~------------~~dll~~ll~ 211 (397)
T 3buj_A 156 VGRWSRDVGRTL---D---R-G-A----SAEDMRRGHAAIAEFADYVERALARRRREG------------GEDLLALMLD 211 (397)
T ss_dssp HHHHHHHHHGGG---C---S-S-C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCSHHHHHHH
T ss_pred HHHHHHHHHhhc---C---C-C-C----ChHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------CCCHHHHHHH
Confidence 222222222111 0 0 0 1 112234455566677788888888765421 1279999997
Q ss_pred ccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhcc
Q 040489 288 LQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPD 367 (413)
Q Consensus 288 ~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEt 367 (413)
... ++. +|++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|+
T Consensus 212 ~~~--~~~-ls~~ei~~~~~~~~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~i~E~ 273 (397)
T 3buj_A 212 AHD--RGL-MSRNEIVSTVVTFIFTGHETVASQVGNAVLSLLAHPDQLDLLRRRPD---------------LLAQAVEEC 273 (397)
T ss_dssp HHH--TTS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHCGG---------------GHHHHHHHH
T ss_pred hhh--cCC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhCHHHHHHHhhCHH---------------HHHHHHHHH
Confidence 541 233 99999999999999999999999999999999999999999999852 999999999
Q ss_pred ccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 368 LRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 368 lRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
||+|||+| .++|.+. ++.+ .+.+.+++++|..+.+++-|
T Consensus 274 lRl~p~~~-~~~R~~~~d~~~-----~g~~Ip~Gt~V~~~~~~~~r 313 (397)
T 3buj_A 274 LRYDPSVQ-SNTRQLDVDVEL-----RGRRLRRDDVVVVLAGAANR 313 (397)
T ss_dssp HHHSCSCC-EEEEEESSCEEE-----TTEEECTTCEEEEEHHHHTT
T ss_pred HhhcCccc-CcceEECCCEEE-----CCEEECCCCEEEEChhhhCC
Confidence 99999999 6777664 3333 47888999999888887765
No 62
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=100.00 E-value=5.7e-34 Score=278.30 Aligned_cols=300 Identities=13% Similarity=0.137 Sum_probs=213.0
Q ss_pred CCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCccccc-------CCCcceEeccCC
Q 040489 54 SEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVS-------SNQHNISSASYG 126 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~-------~~~~~i~~~~~g 126 (413)
.+++.++.++ ++||||+++.+| ++++++|+.+++|+.+. ..+.+++.........+ ..+.++. ..+|
T Consensus 29 ~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~dg 102 (418)
T 3r9b_A 29 ADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFL-FLDP 102 (418)
T ss_dssp TCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGG-GCCT
T ss_pred cCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchh-hcCC
Confidence 4688888888 688999987666 89999999999999653 34444432110111110 0112343 3579
Q ss_pred hhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHH
Q 040489 127 TTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQI 205 (413)
Q Consensus 127 ~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~ 205 (413)
+.|+++||.+. +.|+++.++.+.+.+++.++.+++ |. .. .++|+...+ ..+++++++. +||.+.++.
T Consensus 103 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~-l~---~~----~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~-- 170 (418)
T 3r9b_A 103 PDHTRLRGLVS-KAFAPRVIKRLEPEITALVDQLLD-AV---DG----PEFNLIDNLAYPLPVAVICR-LLGVPIEDE-- 170 (418)
T ss_dssp THHHHHHHHHH-GGGSHHHHGGGHHHHHHHHHHHHH-TC---CS----SEEEHHHHTTTHHHHHHHHH-HHTCCGGGH--
T ss_pred chHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHh-hh---cc----CCeehHHHHhCcCCHHHHHH-HcCCCHHHH--
Confidence 99999999875 889999999999999999999888 63 22 478876554 6899999999 899887432
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHH
Q 040489 206 KKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTL 285 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~l 285 (413)
..+......+...+. .++.+..+ .....++..+..+.+.+++.++++++++.. ..|+++.|
T Consensus 171 ~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~~r~~~~------------~~d~l~~l 231 (418)
T 3r9b_A 171 PKFSRASALLAAALD------PFLALTGE-TSDLFDEQMKAGMWLRDYLRALIDERRRTP------------GEDLMSGL 231 (418)
T ss_dssp HHHHHHHHHHHHTTS------CHHHHHSS-CCTTHHHHHHHHHHHHHHHHHHHHHTTTSC------------CSSHHHHH
T ss_pred HHHHHHHHHHHhhcC------cccccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CccHHHHH
Confidence 222222222221111 11111111 112234555666777778888887664321 12799999
Q ss_pred HhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhh
Q 040489 286 LDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICI 365 (413)
Q Consensus 286 l~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avik 365 (413)
++.. +++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+
T Consensus 232 l~~~--~~~~~ls~~ei~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~i~ 294 (418)
T 3r9b_A 232 VAVE--ESGDQLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRTPGQWAALAADGS---------------RASAVIE 294 (418)
T ss_dssp HHHH--HHSSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSTTHHHHHHHCGG---------------GHHHHHH
T ss_pred HHhh--hccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCHHHHHHHHhChH---------------hHHHHHH
Confidence 8753 2445699999999999999999999999999999999999999999999863 8999999
Q ss_pred ccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 366 PDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 366 EtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+||+|||+|+..+.+..++.+ .+...++++.|..+.+++-|
T Consensus 295 E~lRl~p~~~~~~R~~~~d~~l-----~g~~Ip~G~~V~~~~~~~~r 336 (418)
T 3r9b_A 295 ETMRYDPPVQLVSRYAGDDLTI-----GTHTVPKGDTMLLLLAAAHR 336 (418)
T ss_dssp HHHHHSCSBCCEEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HHHHhCCccccceeEeCCCeEE-----CCEEECCCCEEEEChHHhcC
Confidence 9999999999965444444444 46788888888887777654
No 63
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=100.00 E-value=1.6e-33 Score=273.27 Aligned_cols=284 Identities=12% Similarity=0.110 Sum_probs=206.1
Q ss_pred HHHHhhcCCeEEEEcC-Cc---cEEEEeChHHHHHHHHhcCcccccCCC------CCCCccc--ccCCCcceEeccCChh
Q 040489 61 RNLHSKLGPVVTLFIG-PR---PAIFIADRSLAHKALVQNGAIFADRPR------PLPTSKI--VSSNQHNISSASYGTT 128 (413)
Q Consensus 61 ~~~~~kyG~i~~~~~g-~~---~~v~i~dpe~i~~il~~~~~~f~~r~~------~~~~~~~--~~~~~~~i~~~~~g~~ 128 (413)
.+|.++ |||++++++ +. ++++++||+.++++|+.+ ..|.+++. ....... .. .+.++.+ .+|+.
T Consensus 20 ~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~-~~g~~ 95 (398)
T 1lfk_A 20 DELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRE-LVGNLMD-YDPPE 95 (398)
T ss_dssp HHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------C-CTTCGGG-CCTTH
T ss_pred HHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccc-cccCccc-cCCHH
Confidence 346565 999998865 45 899999999999999433 34666653 1100000 11 1234433 57999
Q ss_pred HHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHH-HHHHHHHHHHhcCCCChHHHHH
Q 040489 129 WRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQY-AMFCLLVLMCFGDKLDESQIKK 207 (413)
Q Consensus 129 w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~-~~~~vi~~~~fG~~~~~~~~~~ 207 (413)
|+++||.+. +.|++..++.+.+.+++.++.+++.|... | .++|+.+.+.. +++++++. +||.+.++. ..
T Consensus 96 ~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~---~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~--~~ 165 (398)
T 1lfk_A 96 HTRLRRKLT-PGFTLRKMQRMAPYIEQIVNDRLDEMERA---G---SPADLIAFVADKVPGAVLCE-LVGVPRDDR--DM 165 (398)
T ss_dssp HHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH---C---SSEEHHHHTTTTHHHHHHHH-HHTCCGGGH--HH
T ss_pred HHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc---C---CCccHHHHHHHHHHHHHHHH-HcCCCHHHH--HH
Confidence 999999875 78999999999999999999999998742 2 57999998876 88999998 699886432 12
Q ss_pred HHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHh
Q 040489 208 IENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLD 287 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~ 287 (413)
+... ...+.. ..+ ..++..+..+.+.+++.++++++++.. ..|+++.|++
T Consensus 166 ~~~~----~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~i~~r~~~~------------~~dll~~ll~ 215 (398)
T 1lfk_A 166 FMKL----CHGHLD-----ASL---------SQKRRAALGDKFSRYLLAMIARERKEP------------GEGMIGAVVA 215 (398)
T ss_dssp HHHH----HHHTTC-----TTS---------CHHHHHHHHHHHHHHHHHHHHHHHHSC------------CSSHHHHHHH
T ss_pred HHHH----HHHHHh-----ccc---------chHHHHHHHHHHHHHHHHHHHHHHhCC------------CCCHHHHHHH
Confidence 2111 111111 000 113344455667778888887765421 1279999987
Q ss_pred ccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhcc
Q 040489 288 LQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPD 367 (413)
Q Consensus 288 ~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEt 367 (413)
.. +..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|+
T Consensus 216 ~~----~~~l~~~el~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~i~E~ 276 (398)
T 1lfk_A 216 EY----GDDATDEELRGFCVQVMLAGDDNISGMIGLGVLAMLRHPEQIDAFRGDEQ---------------SAQRAVDEL 276 (398)
T ss_dssp HH----GGGSCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHSGGGGGGGSSCHH---------------HHHHHHHHH
T ss_pred hc----CCCCCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHCHHHHHHHHhCHH---------------HHHHHHHHH
Confidence 53 23589999999999999999999999999999999999999999999874 899999999
Q ss_pred ccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 368 LRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 368 lRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
||+|||+|+.++|.+. ++.+ .+...+++++|..+.+++-|
T Consensus 277 lRl~p~~~~~~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 317 (398)
T 1lfk_A 277 IRYLTVPYSPTPRIAREDLTL-----AGQEIKKGDSVICSLPAANR 317 (398)
T ss_dssp HHHHCCBSCCSCEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HHhCcccccccceecCCCeeE-----CCEEECCCCEEEeChHHhCC
Confidence 9999999977777664 3333 47888999999888887765
No 64
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=100.00 E-value=3.5e-33 Score=272.93 Aligned_cols=295 Identities=11% Similarity=0.098 Sum_probs=214.2
Q ss_pred CCchHHHHHHHhhcC-CeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcccccCCCcceEeccCChhHHHH
Q 040489 54 SEIEPILRNLHSKLG-PVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVSSNQHNISSASYGTTWRLF 132 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG-~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~ 132 (413)
.+++.++.++.+++| ||+++..++ +.++++||+.+++|+. +.+.|.+++... ........+.++ +..+|+.|+++
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~-~~~~~~~~~~~~-~~~dg~~h~~~ 113 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYR-SPERFSSRVIWV-PREAGEAYDMVP-TKLDPPEHTPY 113 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEETTCCSS-SHHHHHHCCCTT-TTCCTTTHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHc-ChhhccCCcccC-CcccccccccCC-ccCCcHHHHHH
Confidence 367888988877655 899887765 4899999999999994 445777765322 111111112233 34579999999
Q ss_pred HHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 040489 133 RRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQIKKIENV 211 (413)
Q Consensus 133 Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~ 211 (413)
||.+. +.|++..++.+.+.+.+.++.+++.|.. . ..+|+...+ ..++.++++. +||.+.++ ...+...
T Consensus 114 R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~----~~~d~~~~~~~~~~~~v~~~-~~G~~~~~--~~~~~~~ 182 (421)
T 3lxh_A 114 RKAID-KGLNLAEIRKLEDQIRTIAVEIIEGFAD---R----GHCEFGSEFSTVFPVRVFLA-LAGLPVED--ATKLGLL 182 (421)
T ss_dssp HHHHH-HHHSHHHHHTTHHHHHHHHHHHHHTTTT---T----SEEEHHHHTTTTHHHHHHHH-HHTCCGGG--HHHHHHH
T ss_pred HHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHhh---c----CCeehHHHHHHHHHHHHHHH-HcCCCHHH--HHHHHHH
Confidence 99875 7899999999999999999998887753 1 468865554 6678888876 58976532 2233222
Q ss_pred HHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCC
Q 040489 212 QRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLP 291 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~ 291 (413)
...+.. ...++|. ..+++..+..+.+.+++.++++++++.. ..|+++.|++...
T Consensus 183 ~~~~~~------~~~~~p~-------~~~~~~~~~~~~~~~~~~~~i~~r~~~~------------~~dll~~ll~~~~- 236 (421)
T 3lxh_A 183 ANEMTR------PSGNTPE-------EQGRSLEAANKGFFEYVAPIIAARRGGS------------GTDLITRILNVEI- 236 (421)
T ss_dssp HHHHHS------CCCSSHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTCC------------CCSHHHHHHTSCB-
T ss_pred HHHHhc------cccCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHhCC------------CCCHHHHHHhhhc-
Confidence 222211 1112221 1234555666777788888887765321 1289999998643
Q ss_pred cccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhcccccc
Q 040489 292 EEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRIH 371 (413)
Q Consensus 292 ~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~ 371 (413)
++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|+||+|
T Consensus 237 -~~~~l~~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~i~E~lRl~ 300 (421)
T 3lxh_A 237 -DGKPMPDDRALGLVSLLLLGGLDTVVNFLGFMMIYLSRHPETVAEMRREPL---------------KLQRGVEELFRRF 300 (421)
T ss_dssp -TTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH---------------HHHHHHHHHHHHC
T ss_pred -cCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCHHHHHHHHhCHH---------------HHHHHHHHHHHhc
Confidence 445699999999999999999999999999999999999999999999985 8999999999999
Q ss_pred CCCCCCCcchh-hhhhhccccccccccccccccceeeeeeec
Q 040489 372 MHLSLDDPECV-RAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 372 pp~~~~~pr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
||+ . ++|.+ +++.+ .+...++++.|..+.+++-|
T Consensus 301 p~~-~-~~R~~~~d~~l-----~G~~Ip~G~~V~~~~~~~~r 335 (421)
T 3lxh_A 301 AVV-S-DARYVVSDMEF-----HGTMLKEGDLILLPTALHGL 335 (421)
T ss_dssp CCB-E-EEEEECSCEEE-----TTEEECTTCEEEEETHHHHT
T ss_pred Ccc-C-CceeeCCCeeE-----CCEEECCCCEEEEchhhhCC
Confidence 999 4 56655 44444 46888899998888777655
No 65
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=100.00 E-value=1.7e-33 Score=276.57 Aligned_cols=294 Identities=16% Similarity=0.115 Sum_probs=201.1
Q ss_pred CchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcccccCCCcceEeccCChhHHHHHH
Q 040489 55 EIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVSSNQHNISSASYGTTWRLFRR 134 (413)
Q Consensus 55 ~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~Rk 134 (413)
+++.++.++ ++||||+++..++ .+++++|+.+++||.+.. .|.+++........++ ..++. ..+|+.|+++||
T Consensus 54 ~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~--~~~l~-~~dg~~h~~~Rr 126 (441)
T 3nc3_A 54 NPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVMR--GPVLA-QMHGKEHSAKRR 126 (441)
T ss_dssp CGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSCC----------------CCHH
T ss_pred ChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-cccccccccccccccC--CCccc-cCCcHHHHHHHH
Confidence 466677766 7899999876555 799999999999997654 4776654322222222 12343 457999999999
Q ss_pred HHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 040489 135 NLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVL-DHFQYAMFCLLVLMCFGDKLDESQIKKIENVQR 213 (413)
Q Consensus 135 ~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~-~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~ 213 (413)
.+. +.|++..++.+.+.+.+.++.+++.|.. + ..+|+. +....+++++|+. +||.+.++. ..+.....
T Consensus 127 ~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~---~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~--~~~~~~~~ 195 (441)
T 3nc3_A 127 IVV-RSFIGDALDHLSPLIKQNAENLLAPYLE----R---GKSDLVNDFGKTFAVCVTMD-MLGLDKRDH--EKISEWHS 195 (441)
T ss_dssp HHH-HHHHHTHHHHHHHHHHHHHHHHHTTTTT----T---TEEECCCCCHHHHHHHHHHH-HTTCCGGGH--HHHHHHHH
T ss_pred HHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh----c---CCCcHHHHHHHHHHHHHHHH-HcCCCHHHH--HHHHHHHH
Confidence 875 8899999999999999999988887642 2 468864 4456789999998 589876432 22222222
Q ss_pred HHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcc
Q 040489 214 TQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEE 293 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~ 293 (413)
.+........ .+ ....+...+..+.+.+++.++++++++.. ..|+++.|++... +
T Consensus 196 ~~~~~~~~~~----~~-------~~~~~~~~~~~~~l~~~~~~~i~~rr~~~------------~~Dll~~Ll~~~~--~ 250 (441)
T 3nc3_A 196 GVADFITSIS----QS-------PEARAHSLWCSEQLSQYLMPVIKERRVNP------------GSDLISILCTSEY--E 250 (441)
T ss_dssp HHHHHHHCSC----CC-------HHHHHHHHHHHHHHHHHHHHHHHHHTTSC------------CSSHHHHHCC------
T ss_pred HHHHhccccc----CC-------hHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CCCHHHHHHHhhc--c
Confidence 2222211100 00 01123344455667778888887765321 1279999997653 3
Q ss_pred cCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccccccCC
Q 040489 294 KRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRIHMH 373 (413)
Q Consensus 294 ~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~pp 373 (413)
+..+|+++|.+++..+++||+|||+++++|++++|++||++|+|+++|+ +|+.|||+|+||+|||
T Consensus 251 ~~~ls~~el~~~~~~ll~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~E~---------------~~l~a~i~E~LRl~pp 315 (441)
T 3nc3_A 251 GMALSDKDILALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVLADR---------------SLVPRAIAETLRYKPP 315 (441)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHCG---------------GGHHHHHHHHHHHSCS
T ss_pred CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHhCH---------------HHHHHHHHHhhhcCCc
Confidence 4569999999999999999999999999999999999999999999974 5999999999999999
Q ss_pred CCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 374 LSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 374 ~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++. ++|.+. ++.+ .+...++++.|..+.+++-|
T Consensus 316 ~~~-~~R~~~~d~~l-----~G~~Ip~Gt~V~~~~~~~~r 349 (441)
T 3nc3_A 316 VQL-IPRQLSQDTVV-----GGMEIKKDTIVFCMIGAANR 349 (441)
T ss_dssp BCE-EEEEESSCEES-----SSCEECTTCEEEEEHHHHHT
T ss_pred ccC-ccEEECCCEEE-----CCEEECCCCEEEechHHhcC
Confidence 998 566554 3333 46788888888887776654
No 66
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=100.00 E-value=2.2e-33 Score=273.63 Aligned_cols=291 Identities=13% Similarity=0.028 Sum_probs=210.3
Q ss_pred CCchHHHHHHHhhcCCeEEEE-cCC-ccEEEEeChHHHHHHHHhcCcccccCCCCCCCc--ccccCC-CcceEeccCChh
Q 040489 54 SEIEPILRNLHSKLGPVVTLF-IGP-RPAIFIADRSLAHKALVQNGAIFADRPRPLPTS--KIVSSN-QHNISSASYGTT 128 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~-~g~-~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~--~~~~~~-~~~i~~~~~g~~ 128 (413)
.+++.++.++.+ ||||+++. .|+ .+++++++++.++++|.+ ...|.+++...... ...... +.++ +..+|+.
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~-~~~fs~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~ 113 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAP-SAPLTSEYGMMIGFDRDHPDNSGGRMM-VVSEHEQ 113 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCT-TSSEECTTCSSTTCCSSSCCTTTTTSG-GGCCHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhC-hhhhcCCccccccccccccccccCCCc-cccCcHH
Confidence 467888888876 99999876 443 789999999999999954 34677665332110 001001 2233 3468999
Q ss_pred HHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHHHH
Q 040489 129 WRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQIKK 207 (413)
Q Consensus 129 w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~ 207 (413)
|+++||.+. +.|++..++.+.+.+.+.++.+++.|.. . .++|+.+.+ ..+++++|+. +||.+.++ ...
T Consensus 114 h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~----~~~dl~~~~~~~~~~~vi~~-l~G~~~~~--~~~ 182 (415)
T 3mgx_A 114 HRKLRKLVG-PLLSRAAARKLAERVRIEVGDVLGRVLD---G----EVCDAATAIGPRIPAAVVCE-ILGVPAED--EDM 182 (415)
T ss_dssp HHHHHHHHG-GGSSHHHHHHSHHHHHHHHHHHTTTSSS---S----SCEESTTTTTTHHHHHHHHH-HHTCCGGG--HHH
T ss_pred HHHHHHHhH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh---c----CCcchHHHHHHHHHHHHHHH-HcCCCHHH--HHH
Confidence 999999865 8899999999999999998888876642 2 368988877 6799999998 58976432 222
Q ss_pred HHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHh
Q 040489 208 IENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLD 287 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~ 287 (413)
+......+. ......+.| ... .+..+.+.+++.++++++++.. . .|+++.|++
T Consensus 183 ~~~~~~~~~----~~~~~~~~~-------~~~----~~~~~~l~~~~~~~i~~rr~~~---------~---~dll~~ll~ 235 (415)
T 3mgx_A 183 LIDLTNHAF----GGEDELFDG-------MTP----RQAHTEILVYFDELITARRKEP---------G---DDLVSTLVT 235 (415)
T ss_dssp HHHHHHHHT----SCCC----C-------CCH----HHHHHHHHHHHHHHHHHHHHSC---------C---SSHHHHHHH
T ss_pred HHHHHHHHH----cccCcccch-------HHH----HHHHHHHHHHHHHHHHHHHhCC---------C---CCHHHHHHh
Confidence 322222211 111111111 111 1344566777888887775421 1 279999997
Q ss_pred ccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhcc
Q 040489 288 LQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPD 367 (413)
Q Consensus 288 ~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEt 367 (413)
.. .+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ ||++|||+|+
T Consensus 236 ~~------~ls~~el~~~~~~ll~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~E~---------------~~l~a~i~E~ 294 (415)
T 3mgx_A 236 DD------DLTIDDVLLNCDNVLIGGNETTRHAITGAVHALATVPGLLTALRDGS---------------ADVDTVVEEV 294 (415)
T ss_dssp CT------TSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSTTHHHHHHHTS---------------SCHHHHHHHH
T ss_pred CC------CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCHHHHHHHHhCh---------------HhHHHHHHHH
Confidence 42 59999999999999999999999999999999999999999999985 6999999999
Q ss_pred ccccCCCCCCCcchh-hhhhhccccccccccccccccceeeeeeec
Q 040489 368 LRIHMHLSLDDPECV-RAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 368 lRl~pp~~~~~pr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
||++||++. ++|.+ .++.+ .+...++++.|..+.+++-|
T Consensus 295 LRl~pp~~~-~~R~~~~d~~l-----~G~~Ip~G~~V~~~~~a~~r 334 (415)
T 3mgx_A 295 LRWTSPAMH-VLRVTTADVTI-----NGRDLPSGTPVVAWLPAANR 334 (415)
T ss_dssp HHHHCCBCE-EEEEESSCEEE-----TTEEECTTCEEEEEHHHHTT
T ss_pred HHhcCcccc-cceecCCCeeE-----CCEEECCCCEEEechHHhCC
Confidence 999999995 56655 44444 46888899999888887755
No 67
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=100.00 E-value=3.3e-33 Score=270.97 Aligned_cols=290 Identities=15% Similarity=0.137 Sum_probs=208.8
Q ss_pred CCchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccc-c-CCCC--CCCc-ccccC-CCcceEeccCC
Q 040489 54 SEIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFA-D-RPRP--LPTS-KIVSS-NQHNISSASYG 126 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~-~-r~~~--~~~~-~~~~~-~~~~i~~~~~g 126 (413)
.+++.++.+| ++||||+++++ |+.++++++||++++++|.++ .|. + ++.. .... ..+.. .+.++.+ .
T Consensus 16 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-- 89 (396)
T 1n40_A 16 DRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGN-I-- 89 (396)
T ss_dssp SSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHH-H--
T ss_pred cCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhh-H--
Confidence 3578899999 99999999997 788999999999999999754 465 4 4321 1110 01111 1123432 2
Q ss_pred hhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHH
Q 040489 127 TTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQI 205 (413)
Q Consensus 127 ~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~ 205 (413)
.|+++||.+. +.|++. ++.+.+.+.+.++.+++.|... + .++|+.+.+ ..+++++|+. +||.+.++.
T Consensus 90 -~h~~~R~~~~-~~fs~~-~~~~~~~i~~~~~~l~~~l~~~---~---~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~-- 157 (396)
T 1n40_A 90 -ADAGLRKAVM-KAITPK-APGLEQFLRDTANSLLDNLITE---G---APADLRNDFADPLATALHCK-VLGIPQEDG-- 157 (396)
T ss_dssp -HHTTCHHHHH-HHTSSC-STTHHHHHHHHHHHHHHHHHHH---C---SCEETTTTTHHHHHHHHHHH-HHTCCGGGH--
T ss_pred -HHHHHHHHHH-HhhChH-HHHhHHHHHHHHHHHHHHHHhc---C---CCccHHHHHHHHhHHHHHHH-HhCCChhhH--
Confidence 8999999876 779999 9999999999999999998752 2 578988665 5899999998 899886432
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHH
Q 040489 206 KKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTL 285 (413)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~l 285 (413)
..+....... .. .....| .++..+..+.+ +++.++++ .. . ...|+++.|
T Consensus 158 ~~~~~~~~~~----~~--~~~~~p----------~~~~~~~~~~~-~~~~~~i~----~~---~-------~~~dll~~l 206 (396)
T 1n40_A 158 PKLFRSLSIA----FM--SSADPI----------PAAKINWDRDI-EYMAGILE----NP---N-------ITTGLMGEL 206 (396)
T ss_dssp HHHHHTHHHH----TB--CCSSCC----------HHHHHHHHHHH-HHHHHHHH----CT---T-------CCSHHHHHH
T ss_pred HHHHHHHHHH----hc--cccCCC----------HHHHHHHHHHH-HHHHHHHh----CC---C-------CCCCHHHHH
Confidence 2222221111 11 000011 12333344445 56655555 10 0 123799999
Q ss_pred HhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhh
Q 040489 286 LDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICI 365 (413)
Q Consensus 286 l~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avik 365 (413)
++.....++..+|++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ .|++|||+
T Consensus 207 l~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~---------------~~l~a~i~ 271 (396)
T 1n40_A 207 SRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQRPQLRNLLHEKP---------------ELIPAGVE 271 (396)
T ss_dssp HHHHTSGGGTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCG---------------GGHHHHHH
T ss_pred HHhhcccccCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcChHHHHHHHhCH---------------HHHHHHHH
Confidence 975411134569999999999999999999999999999999999999999999985 28999999
Q ss_pred ccccccCCCCCCCcchhhh-hhhccccccccccccccccceeeeeeec
Q 040489 366 PDLRIHMHLSLDDPECVRA-IWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 366 EtlRl~pp~~~~~pr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+||+|||+|+.++|.+.+ +.+ .+.+.+++++|..+.+++-|
T Consensus 272 E~lRl~p~~~~~~~R~~~~d~~~-----~G~~Ip~Gt~V~~~~~~~~r 314 (396)
T 1n40_A 272 ELLRINLSFADGLPRLATADIQV-----GDVLVRKGELVLVLLEGANF 314 (396)
T ss_dssp HHHHTCCCBCSCEEEEESSCEEE-----TTEEECTTCEEEECHHHHHT
T ss_pred HHHhhCCCcccccceecCCCeeE-----CCEEECCCCEEEechHHhhC
Confidence 9999999999777886653 333 47889999999888887755
No 68
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=100.00 E-value=4.3e-33 Score=270.14 Aligned_cols=288 Identities=13% Similarity=0.081 Sum_probs=211.6
Q ss_pred CCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcccccCCCcceEeccCChhHHHHH
Q 040489 54 SEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVSSNQHNISSASYGTTWRLFR 133 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~R 133 (413)
.+++.++.+++++ |||+++..|+ +.++++||+.+++++.+ .+.|.+++... ........+.++ +..+|+.|+++|
T Consensus 24 ~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~-~~~~~~~~~~~~-~~~~g~~h~~~R 98 (396)
T 3oft_A 24 QDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGD-AERLSSQCLAV-TPGLGKVMQFIP-LQQDGAEHKAFR 98 (396)
T ss_dssp TCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHC-TTTEESTTCCS-STTHHHHHCCTT-TTCCHHHHHHHH
T ss_pred cChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcC-cccccCCcccC-CCccccccccCc-cccCCcHHHHHH
Confidence 4689999999998 9999988774 47999999999999965 35777765321 111111111223 345799999999
Q ss_pred HHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 040489 134 RNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQIKKIENVQ 212 (413)
Q Consensus 134 k~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 212 (413)
|.+. +.|++..++.+.+.+.+.++.+++.|... ..+|+...+ ..++.++++. +||.+.++ ...+....
T Consensus 99 ~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~-------~~~d~~~~~~~~~~~~v~~~-~~G~~~~~--~~~~~~~~ 167 (396)
T 3oft_A 99 TPVM-KGLASRFVVALEPKVQAVARKLMESLRPR-------GSCDFVSDFAEILPLNIFLT-LIDVPLED--RPRLRQLG 167 (396)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHGGG-------SEEEHHHHTTTTHHHHHHHH-HTTCCGGG--HHHHHHHH
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhhc-------CCccHHHHHHHHHHHHHHHH-HcCCCHHH--HHHHHHHH
Confidence 9875 88999999999999999999999988642 357876555 6677788776 68876432 22222222
Q ss_pred HHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCc
Q 040489 213 RTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPE 292 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~ 292 (413)
..+.. . .. .++..+..+.+.+++.++++++++.. ..|+++.|++...
T Consensus 168 ~~~~~---~------~~----------~~~~~~~~~~~~~~~~~~i~~r~~~~------------~~d~l~~ll~~~~-- 214 (396)
T 3oft_A 168 VQLTR---P------DG----------SMTVEQLKQAADDYLWPFIEKRMAQP------------GDDLFSRILSEPV-- 214 (396)
T ss_dssp HHHHS---C------CS----------SCCHHHHHHHHHHHHHHHHHHHHHSC------------CSSHHHHHHTSCB--
T ss_pred HHHhC---C------CC----------HHHHHHHHHHHHHHHHHHHHHHHhCC------------CCCHHHHHHHhhc--
Confidence 21110 0 00 01123344566777888888775431 1289999998643
Q ss_pred ccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccccccC
Q 040489 293 EKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRIHM 372 (413)
Q Consensus 293 ~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~p 372 (413)
++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|+||+||
T Consensus 215 ~~~~l~~~el~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E~~---------------~l~a~i~E~lRl~p 279 (396)
T 3oft_A 215 GGRPWTVDEARRMCRNLLFGGLDTVAAMIGMVALHLARHPEDQRLLRERPD---------------LIPAAADELMRRYP 279 (396)
T ss_dssp TTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCGG---------------GHHHHHHHHHHHCC
T ss_pred cCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHhCHH---------------hHHHHHHHHHHhcC
Confidence 445699999999999999999999999999999999999999999999974 89999999999999
Q ss_pred CCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 373 HLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 373 p~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+ .++|.+. ++.+ .+...++++.|..+.+++-|
T Consensus 280 ~~--~~~R~~~~d~~~-----~g~~Ip~G~~V~~~~~~~~r 313 (396)
T 3oft_A 280 TV--AVSRNAVADVDA-----DGVTIRKGDLVYLPSVLHNL 313 (396)
T ss_dssp CB--EEEEEESSCEEE-----TTEEECTTCEEEEETHHHHT
T ss_pred cc--cCceecCCCEEE-----CCEEECCCCEEEeChHHhCC
Confidence 99 4566554 4443 56888899999888877655
No 69
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.97 E-value=5.8e-31 Score=257.45 Aligned_cols=297 Identities=15% Similarity=0.087 Sum_probs=209.9
Q ss_pred CCchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHhcCcccccCCC--CCCCcc-----cccC-CCcceEecc
Q 040489 54 SEIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQNGAIFADRPR--PLPTSK-----IVSS-NQHNISSAS 124 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~~~~~f~~r~~--~~~~~~-----~~~~-~~~~i~~~~ 124 (413)
++++.++.++.++ |||+++.. ++.++++|++++.+++++.+. ..|++++. ...... .... ...++ +..
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 114 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNF-IAM 114 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCG-GGC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcc-ccc
Confidence 4578888888765 99998876 557799999999999999764 35655431 110111 0010 11233 345
Q ss_pred CChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChH
Q 040489 125 YGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDES 203 (413)
Q Consensus 125 ~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~ 203 (413)
+|+.|+++||.+. +.|++..++.+.+.+.+.++.+++.|. .+ .++|+...+ ..+++++++. +||.+..+.
T Consensus 115 dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~----~~---~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~ 185 (426)
T 3rwl_A 115 DRPRHDEQRKAVS-PIVAPANLAALEGTIRERVSKTLDGLP----VG---EEFDWVDRVSIEITTQMLAT-LFDFPFEER 185 (426)
T ss_dssp CTTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHTSC----SS---SCEEHHHHTHHHHHHHHHHH-HHTCCGGGT
T ss_pred CchHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhh----cC---CCcchHHHHHHHHHHHHHHH-HcCCCHHHH
Confidence 8999999999865 889999999999999999998888762 22 579977666 6788898886 899865332
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHH
Q 040489 204 QIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVD 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld 283 (413)
..+... ...+.... . +.. ....+...+..+.+.+++.+++++++.. + . ..|+++
T Consensus 186 --~~~~~~----~~~~~~~~--~--~~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~---~-----~---~~dll~ 239 (426)
T 3rwl_A 186 --RKLTRW----SDVTTAAP--G--GGV-----VESWDQRKTELLECAAYFQVLWNERVNK---D-----P---GNDLIS 239 (426)
T ss_dssp --HHHHHH----HHHHTCCT--T--SSS-----CSSHHHHHHHHHHHHHHHHHHHHHHHTS---C-----C---CSSHHH
T ss_pred --HHHHHH----HHHHHhcc--C--ccc-----cccHHHHHHHHHHHHHHHHHHHHHHhhc---C-----C---CCCHHH
Confidence 122111 11111110 0 111 0112333445566777888888776321 1 1 128999
Q ss_pred HHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHh
Q 040489 284 TLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFI 363 (413)
Q Consensus 284 ~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~av 363 (413)
.|++.. .++.++++++.+++..+++||+|||+++++|++++|++||++|+|+++|+ +|+.||
T Consensus 240 ~ll~~~---~~~~ls~~el~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~lr~E~---------------~~l~a~ 301 (426)
T 3rwl_A 240 MLAHSP---ATRNMTPEEYLGNVLLLIVGGNDTTRNSMTGGVLALHKNPDQFAKLKANP---------------ALVETM 301 (426)
T ss_dssp HHHHCG---GGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCG---------------GGHHHH
T ss_pred HHHhcc---cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhCh---------------HhHHHH
Confidence 999864 22348999999999999999999999999999999999999999999984 499999
Q ss_pred hhccccccCCCCCCCcchh-hhhhhccccccccccccccccceeeeeeec
Q 040489 364 CIPDLRIHMHLSLDDPECV-RAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 364 ikEtlRl~pp~~~~~pr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+|+||++||++. ++|.+ .++.+ .+...++++.|..+.+++-|
T Consensus 302 i~E~LRl~p~~~~-~~R~~~~d~~l-----~G~~Ip~G~~V~~~~~~~~r 345 (426)
T 3rwl_A 302 VPEIIRWQTPLAH-MRRTAIADSEL-----GGKTIRKGDKVVMWYYSGNR 345 (426)
T ss_dssp HHHHHHHHCSBCC-EEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HHHHHHhcCcccc-CceecCCCeEE-----CCEEECCCCEEEechHHhCC
Confidence 9999999999998 56655 44444 46788888888877776654
No 70
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.97 E-value=2.1e-31 Score=253.29 Aligned_cols=262 Identities=13% Similarity=0.091 Sum_probs=187.6
Q ss_pred hhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcccccCCCcceEeccCChhHHHHHHHHhhhhcCHH
Q 040489 65 SKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVSSNQHNISSASYGTTWRLFRRNLSAEILHPS 144 (413)
Q Consensus 65 ~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~ 144 (413)
++||||+++ + +++++||+++++||.++ ..|.+++..... ..++.++.+ .+|+.|+++||.+. +.|++.
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~----~~~~~~l~~-~~g~~~~~~R~~~~-~~fs~~ 69 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNPGNRYS----NAGGISFIT-MDNPEHKEFRDISA-PYFLPS 69 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSCSSCCC-------CCGGGG-CCHHHHHHHHHHHH-HHHSHH
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCCcCCCC----Ccccccccc-CCchHHHHHHHHhh-hhcCHH
Confidence 589999964 3 89999999999999865 467776522111 112234533 57999999999875 789999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCc
Q 040489 145 RVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFN 223 (413)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (413)
.++.+.+.+++.++.+++.|. ++|+.+.+ ..+++++|+.+ ||.+.++. ..+......+.. .
T Consensus 70 ~l~~~~~~i~~~~~~l~~~l~----------~~d~~~~~~~~~~~~vi~~~-~G~~~~~~--~~~~~~~~~~~~---~-- 131 (343)
T 2rfb_A 70 KINDYKDFIEETSNDLIKNID----------NKDIISEYAVRLPVNIISKI-LGIPDSDM--PLFKLWSDYIIG---N-- 131 (343)
T ss_dssp HHGGGHHHHHHHHHHHHTTCT----------TSCHHHHTTTHHHHHHHHHH-HTCCGGGH--HHHHHHHHHHHT---S--
T ss_pred HHHHHHHHHHHHHHHHHHhcc----------ccCHHHHHhhhhhHHHHHHH-cCCCHHHH--HHHHHHHHHHhh---c--
Confidence 999999999998888887653 47887765 89999999998 99876432 222222222211 1
Q ss_pred ccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHH
Q 040489 224 ILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIV 303 (413)
Q Consensus 224 ~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~ 303 (413)
..|.+. .+++. +..+.+.+++.+++ ..| ++.|++... ++..+|++++.
T Consensus 132 ---~~p~~~------~~~~~-~~~~~~~~~~~~~i-------------------~~d-l~~ll~~~~--~~~~l~~~ei~ 179 (343)
T 2rfb_A 132 ---KRDENF------NYVNN-RMVSRLLEIFKSDS-------------------HGI-INVLAGSSL--KNRKLTMDEKI 179 (343)
T ss_dssp ---CCSSHH------HHHHH-HHHHHHHHHHHSCC-------------------SSH-HHHHHTCBC--SSSBCCHHHHH
T ss_pred ---cCcchh------hHHHH-HHHHHHHHHHHHHH-------------------hcc-HHHHHhhhc--CCCCCCHHHHH
Confidence 113211 11222 22222322222222 127 888887643 24469999999
Q ss_pred HHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccccccCCC-CCCCcchh
Q 040489 304 SLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRIHMHL-SLDDPECV 382 (413)
Q Consensus 304 ~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~pp~-~~~~pr~~ 382 (413)
+++.++++||+|||+++++|++++|++||++|+|+++|+ +|||+|+||+|||+ | .++|.+
T Consensus 180 ~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~------------------~a~i~E~lRl~p~~~~-~~~R~~ 240 (343)
T 2rfb_A 180 KYIMLLIIGGNETTTNLIGNMIRVIDENPDIIDDALKNR------------------SGFVEETLRYYSPIQF-LPHRFA 240 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHCH------------------HHHHHHHHHHSCSBCC-BCCCEE
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHcCc------------------HHHHHHHHhhCccccc-ccceEE
Confidence 999999999999999999999999999999999999985 79999999999999 8 567765
Q ss_pred h-hhhhccccccccccccccccceeeeeeec
Q 040489 383 R-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 383 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
. ++.+ .+.+.++++.|..+.+++-|
T Consensus 241 ~~d~~~-----~g~~Ip~Gt~V~~~~~~~~r 266 (343)
T 2rfb_A 241 AEDSYI-----NNKKIKKGDQVIVYLGSANR 266 (343)
T ss_dssp SSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred CCCeEE-----CCEEECCCCEEEEChhhhCC
Confidence 4 4443 47888999999888887755
No 71
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.97 E-value=4.7e-32 Score=264.47 Aligned_cols=294 Identities=15% Similarity=0.059 Sum_probs=208.9
Q ss_pred CchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCC------CCcccccCCCcceEeccCChh
Q 040489 55 EIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPL------PTSKIVSSNQHNISSASYGTT 128 (413)
Q Consensus 55 ~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~------~~~~~~~~~~~~i~~~~~g~~ 128 (413)
+++.+ ++.++|||++++.+|+.. +++++++.+++||.+.. |....... .........+.++ +..+|+.
T Consensus 34 ~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~ 107 (416)
T 3p3o_A 34 FSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR--LISGFRGLVDMVGTPEGPVRDFMVDFL-QSLDGAD 107 (416)
T ss_dssp CCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT--EECSHHHHHHHHTCCSSHHHHHHHHSG-GGCCHHH
T ss_pred CCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc--cccCCccccccccccccchhhhhcCcc-ccCCchH
Confidence 46666 556789999988887767 99999999999997643 32211000 0001100001123 3468999
Q ss_pred HHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHHHH
Q 040489 129 WRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQIKK 207 (413)
Q Consensus 129 w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~ 207 (413)
|+++||.+. +.|++..++.+.+.+.+.++.+++.| . . ..+|+...+ ..+++++|+. +||.+..+. ..
T Consensus 108 h~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l-~---~----g~~d~~~~~~~~~~~~vi~~-l~G~~~~~~--~~ 175 (416)
T 3p3o_A 108 HRRLRGLAT-HPFTPRRITAVQPFVRSTVEQLIDKL-P---Q----GDFDFVQHFPHPLPALVMCQ-LLGFPLEDY--DT 175 (416)
T ss_dssp HHHHHHTTC-GGGSHHHHHHHHHHHHHHHHHHHHTC-C---S----SSEEHHHHTTTHHHHHHHHH-HHTCCGGGH--HH
T ss_pred HHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhh-c---c----CCccHHHHHHHHHHHHHHHH-HhCCCHHHH--HH
Confidence 999999865 88999999999999999999999887 2 2 358865554 6799999998 589875332 22
Q ss_pred HHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHh
Q 040489 208 IENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLD 287 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~ 287 (413)
+.. ....+.. .+... ......++..+..+.+.+++.++++++++.. ..|+++.|++
T Consensus 176 ~~~----~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~l~~~~~~~i~~rr~~~------------~~dll~~ll~ 231 (416)
T 3p3o_A 176 VGR----LSIETNL-----GLALS---NDQDILVKVEQGLGRMFDYLVAAIEKRKVEP------------GDDLTSDIVR 231 (416)
T ss_dssp HHH----HHHTTCG-----GGTTC---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------------CSSHHHHHHH
T ss_pred HHH----HHHHHHh-----hcccc---cchhhHHHHHHHHHHHHHHHHHHHHHHHhCC------------CccHHHHHHH
Confidence 221 1111111 11110 0112234555666778888888888775431 1279999987
Q ss_pred ccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhcc
Q 040489 288 LQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPD 367 (413)
Q Consensus 288 ~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEt 367 (413)
... ++ .++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |+.|||+|+
T Consensus 232 ~~~--~~-~ls~~el~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~e~~---------------~l~a~i~E~ 293 (416)
T 3p3o_A 232 AFH--DG-VLDDYELRTLVATVLVAGYETTNHQLALAMYDFAQHPDQWMKIKENPE---------------LAPQAVEEV 293 (416)
T ss_dssp HHH--TT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCGG---------------GHHHHHHHH
T ss_pred hhc--cC-CCCHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHCHHHHHHHHhCHH---------------HHHHHHHHH
Confidence 642 22 799999999999999999999999999999999999999999999863 899999999
Q ss_pred ccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 368 LRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 368 lRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
||+|||+|..++|.+.+ +-+-.+...++++.|..+.+++-|
T Consensus 294 lRl~p~~~~~~~R~~~~----d~~l~G~~Ip~G~~V~~~~~~~~r 334 (416)
T 3p3o_A 294 LRWSPTLPVTATRVAAE----DFEVNGVRIPTGTPVFMCAHVAHR 334 (416)
T ss_dssp HHHSCSCSSCCEEEESS----CEEETTEEECTTCEEEECHHHHTT
T ss_pred HhhccccccCcceEeCC----CeEECCEEECCCCEEEEChHHhcC
Confidence 99999998888887653 222356788888888877776654
No 72
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.97 E-value=6e-31 Score=252.54 Aligned_cols=275 Identities=13% Similarity=0.110 Sum_probs=196.5
Q ss_pred hHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCC--C--CC-C--ccc-ccC-CCcceEeccCCh
Q 040489 57 EPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPR--P--LP-T--SKI-VSS-NQHNISSASYGT 127 (413)
Q Consensus 57 ~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~--~--~~-~--~~~-~~~-~~~~i~~~~~g~ 127 (413)
+..+.++ ++||||+++ | +.+++++|+.++++|.+. ..|.+++. . .. . ... ++. .+.++. ..+|+
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~g~ 74 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTML-TSDPP 74 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGG-GCCTT
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccccc-cCCCh
Confidence 5567777 589999975 4 579999999999999864 46777653 0 10 0 010 111 112343 35799
Q ss_pred hHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHHH
Q 040489 128 TWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQIK 206 (413)
Q Consensus 128 ~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~ 206 (413)
.|+++||.+. +.|++..++.+.+.+.+.++.+++.| . . .++|+.+.+ ..+++++|+.+ ||.+.++. .
T Consensus 75 ~h~~~R~~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l-~---~----g~~d~~~~~~~~~~~~vi~~~-~G~~~~~~--~ 142 (368)
T 1io7_A 75 LHDELRSMSA-DIFSPQKLQTLETFIRETTRSLLDSI-D---P----REDDIVKKLAVPLPIIVISKI-LGLPIEDK--E 142 (368)
T ss_dssp HHHHHHGGGT-TTTCHHHHHHHHHHHHHHHHHHHHTC-C---T----TSEEHHHHTTTHHHHHHHHHH-HTCCGGGH--H
T ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHh-h---c----CCccHHHHHHHHHHHHHHHHH-hCCCHHHH--H
Confidence 9999999765 78999999999999999999999887 3 2 368988866 78999999999 99876432 1
Q ss_pred HHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHH
Q 040489 207 KIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLL 286 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll 286 (413)
.+.. ....+.. .. ..|. .+++..+..+.+.+++.+++ +. . .|+++.|+
T Consensus 143 ~~~~----~~~~~~~--~~-~~p~--------~~~~~~~~~~~~~~~~~~~i---------~~----~----~d~l~~ll 190 (368)
T 1io7_A 143 KFKE----WSDLVAF--RL-GKPG--------EIFELGKKYLELIGYVKDHL---------NS----G----TEVVSRVV 190 (368)
T ss_dssp HHHH----HGGGCTT--SC-CCTT--------CHHHHHHHHHHHHHHHHHHT---------TS----S----CHHHHHHH
T ss_pred HHHH----HHHHHHh--cc-CChH--------HHHHHHHHHHHHHHHHHHHh---------CC----C----CCHHHHHH
Confidence 2211 1111111 00 0121 11223333444445554444 00 1 17999998
Q ss_pred hccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhc
Q 040489 287 DLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIP 366 (413)
Q Consensus 287 ~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikE 366 (413)
+. .+|++++.+++.++++||+|||+++++|++++|++|| +|+|+++| + |++|||+|
T Consensus 191 ~~-------~l~~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P-~~~~l~~E-~---------------~l~a~i~E 246 (368)
T 1io7_A 191 NS-------NLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFN-LWQRIREE-N---------------LYLKAIEE 246 (368)
T ss_dssp TS-------SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-CHHHHHHH-T---------------CHHHHHHH
T ss_pred hc-------cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCh-HHHHHHhc-c---------------hHHHHHHH
Confidence 63 5899999999999999999999999999999999999 99999999 1 89999999
Q ss_pred cccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 367 DLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 367 tlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||+|||+| .++|.+. ++.+ .+...+++++|..+.+++-|
T Consensus 247 ~lRl~p~~~-~~~R~~~~d~~l-----~g~~Ip~Gt~V~~~~~~~~r 287 (368)
T 1io7_A 247 ALRYSPPVM-RTVRKTKERVKL-----GDQTIEEGEYVRVWIASANR 287 (368)
T ss_dssp HHHHSCSBC-CEEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HHHhCcccc-cCceeeCCCeeE-----CCEEECCCCEEEecHhhhCC
Confidence 999999999 6677664 3333 46788899998888777655
No 73
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.97 E-value=1.7e-30 Score=251.69 Aligned_cols=292 Identities=11% Similarity=0.064 Sum_probs=205.1
Q ss_pred CchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcccccCCCcceEeccCChhHHHHHH
Q 040489 55 EIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVSSNQHNISSASYGTTWRLFRR 134 (413)
Q Consensus 55 ~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~Rk 134 (413)
+++.++.++.+ +|||+++..| .+++++++.+++++.+ ..|..++........... +.++ +..+|+.|+++||
T Consensus 21 dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d--~~fs~~~~~~~~~~~~~~-~~~l-~~~dg~~h~~~R~ 92 (394)
T 2wiy_A 21 NPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKL--PIMSVEPGWADAGPWAVA-SDTA-LGSDPPHHTVLRR 92 (394)
T ss_dssp CCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTS--TTEECHHHHHTCGGGGGG-GGSG-GGCCTTHHHHHHH
T ss_pred CccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcC--CCccccccccccccchhc-cccc-ccCCchHHHHHHH
Confidence 56778888755 5899976543 5899999999999954 345433211001111111 1233 3468999999999
Q ss_pred HHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 040489 135 NLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHFQYAMFCLLVLMCFGDKLDESQIKKIENVQRT 214 (413)
Q Consensus 135 ~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~ 214 (413)
.+. +.|+++.++.+.+.+++.++.+++.|. .+ .++|+.+.+..+++++++..+||.+.++. ..+......
T Consensus 93 ~~~-~~fs~~~~~~~~~~i~~~~~~l~~~~~----~~---~~~d~~~~~~~~~~~vi~~~~~G~~~~~~--~~~~~~~~~ 162 (394)
T 2wiy_A 93 QTN-KWFTPKLVDGWVRTTRELVGDLLDGVE----AG---QVIEARRDLAVVPTHVTMARVLQLPEDDA--DAVMEAMFE 162 (394)
T ss_dssp HHH-TTCSHHHHHHHTHHHHHHHHHHHHTCC----TT---CCEEHHHHHTHHHHHHHHHHHHTCCCCCH--HHHHHHHHH
T ss_pred HHH-hccCHHHHHHHHHHHHHHHHHHHHHHh----cc---CCeeHHHHHHhhhHHHHHHHHcCCCHhHH--HHHHHHHHH
Confidence 865 899999999999999888888887653 22 57999999999999999999999876432 222221111
Q ss_pred HHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCCccc
Q 040489 215 QLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLPEEK 294 (413)
Q Consensus 215 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~ 294 (413)
.+. . ....|.. ..+++..+....+.+++.+++++++... ++ |+++.|++... +
T Consensus 163 ~~~---~---~~~~p~~------~~~~~~~~~~~~l~~~~~~~i~~rr~~~---------~~---dll~~Ll~~~~---~ 215 (394)
T 2wiy_A 163 AML---M---QSAEPAD------GDVDRAAVAFGYLSARVAEMLEDKRVNP---------GD---GLADSLLDAAR---A 215 (394)
T ss_dssp HHG---G---GSSSCCT------THHHHHHHHHHHHHHHHHHHHHHHHHSC---------CS---SHHHHHHHHHH---T
T ss_pred HHH---h---ccCCccc------hHHHHHHHHHHHHHHHHHHHHHHhhcCC---------CC---cHHHHHHHhhh---c
Confidence 110 0 0111211 1123333445566677777787765321 12 78898887542 2
Q ss_pred CCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhccccccCCC
Q 040489 295 RKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRIHMHL 374 (413)
Q Consensus 295 ~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~pp~ 374 (413)
+.+|++|+.+++.++++||+|||+++++|++++|++||++|+|+++|+ +|++|||+|+||++||+
T Consensus 216 ~~ls~~el~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~e~---------------~~l~a~i~E~LRl~pp~ 280 (394)
T 2wiy_A 216 GEITESEAIATILVFYAVGHMAIGYLIASGIELFARRPEVFTAFRNDE---------------SARAAIINEMVRMDPPQ 280 (394)
T ss_dssp TSSCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHCHHHHHHHHHCG---------------GGHHHHHHHHHHHSCSB
T ss_pred CCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHCHHHHHHHHhCh---------------HhHHHHHHHHHhhCCCc
Confidence 359999999999999999999999999999999999999999999975 38999999999999999
Q ss_pred CCCCcchh-hhhhhccccccccccccccccceeeeeeec
Q 040489 375 SLDDPECV-RAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 375 ~~~~pr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+. ++|.+ .++.+ .+...++|+.|....+++-|
T Consensus 281 ~~-~~R~~~~d~~l-----~G~~Ip~G~~V~~~~~~~~r 313 (394)
T 2wiy_A 281 LS-FLRFPTEDVEI-----GGVLIEAGSPIRFMIGAANR 313 (394)
T ss_dssp CE-EEEEESSCEEE-----TTEEECTTCCEEEEHHHHTT
T ss_pred cC-eeEEECCCEEE-----cCeecCCCCEEEeChHhhcC
Confidence 85 45554 34443 46778888888877776654
No 74
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.97 E-value=7e-31 Score=251.96 Aligned_cols=275 Identities=13% Similarity=0.072 Sum_probs=197.1
Q ss_pred hHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCC--C-----c-ccccCC-CcceEeccCCh
Q 040489 57 EPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLP--T-----S-KIVSSN-QHNISSASYGT 127 (413)
Q Consensus 57 ~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~--~-----~-~~~~~~-~~~i~~~~~g~ 127 (413)
+..+.++ ++||||+++. | ++++++|+.++++|.+. +.|.+++.... . . .+.+.. ..++.+ .+|+
T Consensus 2 ~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~dg~ 74 (367)
T 3b4x_A 2 YDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLT-SDPP 74 (367)
T ss_dssp HHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGG-CCTT
T ss_pred CHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhccccccccc-CCch
Confidence 4566777 5899999876 3 79999999999999865 36776642111 1 1 222200 134433 5799
Q ss_pred hHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHHH
Q 040489 128 TWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQIK 206 (413)
Q Consensus 128 ~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~ 206 (413)
.|+++||.+. +.|+++.++. +.+++.++.+++.|. | . +|+.+.+ ..+++++|+. +||.+ ++. .
T Consensus 75 ~h~~~R~~~~-~~fs~~~l~~--~~i~~~~~~l~~~l~-----g---~-~d~~~~~~~~~~~~vi~~-~~G~~-~~~--~ 138 (367)
T 3b4x_A 75 LHDELRNLTA-DAFNPSNLPV--DFVREVTVKLLSELD-----E---E-FDVIESFAIPLPILVISK-MLGIN-PDV--K 138 (367)
T ss_dssp HHHHHHHTTG-GGGSGGGSCH--HHHHHHHHHHHHTCC-----S---E-EEHHHHTTTHHHHHHHHH-HHTCC-CCH--H
T ss_pred hHHHHHHHHH-HhcCHhhhcc--hHHHHHHHHHHHhcc-----C---C-cchHHHHHHhhHHHHHHH-HcCCC-CcH--H
Confidence 9999999765 7899999988 888888888887664 3 3 8988765 7999999999 79998 532 2
Q ss_pred HHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHH
Q 040489 207 KIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLL 286 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll 286 (413)
.+......+...+ ...|... +.. +..+.+.+++.++++++++.. ..|+++.|+
T Consensus 139 ~~~~~~~~~~~~~------~~~p~~~--------~~~-~~~~~~~~~~~~~i~~r~~~~------------~~dll~~ll 191 (367)
T 3b4x_A 139 KVKDWSDLVALRL------GRADEIF--------SIG-RKYLELISFSKKELDSRKGKE------------IVDLTGKIA 191 (367)
T ss_dssp HHHHHHHHHHTTT------TSTTGGG--------CCC-HHHHHHHHHHHHHHHHHTTTC------------CSSHHHHHH
T ss_pred HHHHHHHHHHhcc------CCChhhH--------HHH-HHHHHHHHHHHHHHHHHhcCC------------CCCHHHHHH
Confidence 2222222222111 1123211 111 234456667777777664311 127999998
Q ss_pred hccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhc
Q 040489 287 DLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIP 366 (413)
Q Consensus 287 ~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikE 366 (413)
+. .+|++++.+++.++++||+|||+++++|++++|++ |++|+|+++|++ +|||+|
T Consensus 192 ~~-------~ls~~el~~~~~~l~~AG~eTt~~~l~~~l~~L~~-P~~~~~l~~e~~-----------------~a~i~E 246 (367)
T 3b4x_A 192 NS-------NLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTL-YNSWDYVREKGA-----------------LKAVEE 246 (367)
T ss_dssp TS-------SSCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH-TTCHHHHHHHCS-----------------HHHHHH
T ss_pred hc-------cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC-HHHHHHHHhCCc-----------------hHHHHH
Confidence 64 58999999999999999999999999999999999 999999999963 799999
Q ss_pred cccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 367 DLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 367 tlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||+|||+| .++|.+. ++.+ .+...++++.|..+.+++-|
T Consensus 247 ~lRl~p~~~-~~~R~~~~d~~l-----~g~~Ip~Gt~V~~~~~~~~r 287 (367)
T 3b4x_A 247 ALRFSPPVM-RTIRVTKEKVKI-----RDQVIDEGELVRVWIASANR 287 (367)
T ss_dssp HHHHSCSBC-CEEEEESSCEEE-----TTEEECTTCEEEECHHHHTT
T ss_pred HHHhcCccc-CeeEEeCCCeEE-----CCEEECCCCEEEEChhhhcC
Confidence 999999999 6677664 3333 46788899998888777655
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.95 E-value=2.4e-27 Score=230.81 Aligned_cols=308 Identities=14% Similarity=0.068 Sum_probs=196.6
Q ss_pred CCccccccc-c--hhhhhccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCC--Ccc
Q 040489 37 PFNLPVIGN-L--QWLLKSFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLP--TSK 111 (413)
Q Consensus 37 P~~~pl~G~-l--~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~--~~~ 111 (413)
+.++|.+|- . ..+. .+++.++.++ +++|||+ +.++..+++|++++.+++||.+. ..|.+...... ...
T Consensus 17 ~~~~P~~~~dp~~~~~~---~dP~~~~~~l-R~~gPV~--~~~~~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~ 89 (412)
T 4dnj_A 17 GAGVPHLGIDPFALDYF---ADPYPEQETL-REAGPVV--YLDKWNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDFKK 89 (412)
T ss_dssp STTSCEECCCTTSHHHH---HSCHHHHHHH-HHHCSSE--EETTTTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCTTT
T ss_pred CCCCCccCCCCCCHHHH---hCcHHHHHHH-HhcCCEE--EECCCCEEEECCHHHHHHHHcCC-ccccCCCccccccccc
Confidence 346787762 1 1222 3578888777 4589998 55667789999999999999643 34543321110 000
Q ss_pred -cccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccch-HHHHHHHHHH
Q 040489 112 -IVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRV-LDHFQYAMFC 189 (413)
Q Consensus 112 -~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~-~~~~~~~~~~ 189 (413)
........+ ...+|+.|+++||.++ +.|+++.++.+.+.+.+.++.+++.+... + ..+|+ .+....++++
T Consensus 90 ~~~~~~~~~~-~~~Dg~~H~r~R~~~~-~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~---~---~~~D~v~~~~~~~~~~ 161 (412)
T 4dnj_A 90 EKPWRPPSLI-LEADPPAHTRTRAVLS-KVLSPATMKRLRDGFAAAADAKIDELLAR---G---GNIDAIADLAEAYPLS 161 (412)
T ss_dssp SCCSSCCCTT-TTCCTTHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHHHT---T---SEEETCCCCCCHHHHH
T ss_pred cccccCCCcc-ccCChHHHHHHHhhcc-cccCHHHHHHhhHHHHHHHHHHHHhhhcc---C---CCceeHHHHHhhhhHh
Confidence 000011223 3468999999999865 89999999999999999999998887643 2 45664 4555777888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 040489 190 LLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEES 269 (413)
Q Consensus 190 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~ 269 (413)
+++.++.....+.......... +..... ..... .+........+. ..+.++.+.. .
T Consensus 162 ~i~~l~g~~~~~~~~~~~~~~~---~~~~~~------~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~--~- 217 (412)
T 4dnj_A 162 VFPDAMGLKQEGRENLLPYAGL---VFNAFG------PPNEL--------RQSAIERSAPHQ----AYVAEQCQRP--N- 217 (412)
T ss_dssp HHHHHHTCCSTTGGGHHHHHHH---HHHHTS------CSSHH--------HHHHHHTCHHHH----HHHHHHTSGG--G-
T ss_pred HHHHHcCCchhhhhhhhhhhhc---cccccc------ccHHH--------HHHHHHHHHHHH----HHHHHHHHhh--c-
Confidence 8887544333232222222111 111110 00000 011111111111 1122221111 0
Q ss_pred hhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCC
Q 040489 270 LSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGEN 349 (413)
Q Consensus 270 ~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~ 349 (413)
. ..+.+..++.... ++..++++|+.+++.++++||+|||+++++|++|+|++||++|+||++|
T Consensus 218 ------~-~~~~~~~l~~~~~--~~~~l~~~e~~~~~~~l~~AG~eTTa~~l~~~~~~L~~~P~~~~~Lr~~-------- 280 (412)
T 4dnj_A 218 ------L-APGGFGACIHAFS--DTGEITPEEAPLLVRSLLSAGLDTTVNGIAAAVYCLARFPDEFARLRAD-------- 280 (412)
T ss_dssp ------S-CTTSHHHHHHHTT--TTTSSCTTHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHCHHHHHHHHHC--------
T ss_pred ------c-ccccchhhhHhhh--hccchhHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhCHHHHHHHHhC--------
Confidence 0 1134455554432 4567999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCChhHHHhhhccccccCCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 350 EEGPKYRVPLFLFICIPDLRIHMHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 350 ~~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
..|+.++++|++|++||++...+.+++++.+ .+....+|+.|..+.+++-|
T Consensus 281 -------~~~~~~~~eE~lR~~pp~~~~~R~a~~d~~l-----~G~~Ip~G~~V~~~~~a~~r 331 (412)
T 4dnj_A 281 -------PSLARNAFEEAVRFESPVQTFFRTTTRDVEL-----AGATIGEGEKVLMFLGSANR 331 (412)
T ss_dssp -------GGGHHHHHHHHHHHHCSBCEEEEEESSCEEE-----TTEEECTTCEEEEEHHHHTT
T ss_pred -------ccccccccceeeeecCCcccccccCCCCeEE-----CCccCCCCCeEEeehhhccC
Confidence 3488999999999999999865556555444 56788888888888777655
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.90 E-value=2.8e-22 Score=195.02 Aligned_cols=296 Identities=10% Similarity=0.099 Sum_probs=190.4
Q ss_pred CCchHHHHHHHhhcC-CeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCCcccccCCCcceEeccCChhHHHH
Q 040489 54 SEIEPILRNLHSKLG-PVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPTSKIVSSNQHNISSASYGTTWRLF 132 (413)
Q Consensus 54 ~~~~~~~~~~~~kyG-~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~i~~~~~g~~w~~~ 132 (413)
.++|..+.++.+..+ +++-.-.++ ...+|+..+.+++|+.+ .+.|+++...... . .+..........+|+.|+++
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d-~~~fs~~~~~~~~-~-~~~~~~~~~~~~D~p~H~r~ 112 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSD-PTRFSSEVIFLPK-E-AGEKAQMVPTKMDPPEHTPY 112 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEESSCCSSST-T-SSCSSCTTTTTCCTTTHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcC-chhccCCCccccc-c-cccccccCcccCCcHHHHHH
Confidence 357777777765543 455322233 35678999999999964 3456554322111 1 11111112233579999999
Q ss_pred HHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 040489 133 RRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF-QYAMFCLLVLMCFGDKLDESQIKKIENV 211 (413)
Q Consensus 133 Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~ 211 (413)
||.++ +.|++++++.+.+.+++.++.+++.|... ..+|+...+ ..+.+.+++. ++|....+ ...+...
T Consensus 113 Rrll~-~~Fs~~~l~~~~~~i~~~~~~lld~l~~~-------g~~D~v~~~a~~l~~~vi~~-llg~~~~d--~~~~~~~ 181 (417)
T 4dxy_A 113 RKALD-KGLNLAKIRKVEDKVREVASSLIDSFAAR-------GECDFAAEYAELFPVHVFMA-LADLPLED--IPVLSEY 181 (417)
T ss_dssp HHHHH-HHHCHHHHHTTHHHHHHHHHHHHHHHHTT-------SEEEHHHHTTTTHHHHHHHH-HTTCCGGG--HHHHHHH
T ss_pred HHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHhhhc-------CCeeeHHHHHhhhHHHHHHH-HcCCCHHH--HHHHHhh
Confidence 99865 88999999999999999999999887642 467765554 5566666665 57876432 2222222
Q ss_pred HHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhccCC
Q 040489 212 QRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKKMKEEESLSIKEREYVLSYVDTLLDLQLP 291 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~~~~~~~~~~~~~~~~~~~ld~ll~~~~~ 291 (413)
...+. .. .... ..............+..++.++++++++.. ++ |+++.|+....
T Consensus 182 ~~~~~----~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~li~~rr~~~---------~d---dl~s~L~~~~~- 235 (417)
T 4dxy_A 182 ARQMT----RP--EGNT-------PEEMATDLEAGNNGFYAYVDPIIRARVGGD---------GD---DLITLMVNSEI- 235 (417)
T ss_dssp HHHHH----SC--CCSS-------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------CC---SHHHHHHTCEE-
T ss_pred hhhhc----cc--cccC-------hHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------cc---chhhhhccccc-
Confidence 11111 10 0001 111223334455666777777777664321 12 78888887542
Q ss_pred cccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCCCCCCCChhHHHhhhcccccc
Q 040489 292 EEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEEGPKYRVPLFLFICIPDLRIH 371 (413)
Q Consensus 292 ~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~~~~~~lpyl~avikEtlRl~ 371 (413)
++..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|... -....|.+|+|
T Consensus 236 -~~~~~~~~e~~~~~~~ll~AG~eTTa~~l~~~~~~L~~~P~~~~~l~~e~~~----------------~~~avee~~~~ 298 (417)
T 4dxy_A 236 -NGERIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLARHPELVAELRSDPLK----------------LMRGAEEMFRR 298 (417)
T ss_dssp -TTEECCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHHHHHCHHH----------------HHHTHHHHHHH
T ss_pred -cCCccchhHHHHHHHHHHhhcccchhhHHHHHHHHHHhCchhhhhhccCccc----------------cccceeeeecc
Confidence 4566999999999999999999999999999999999999999999998643 23345666667
Q ss_pred CCCCCCCcchhhhhhhccccccccccccccccceeeeeeec
Q 040489 372 MHLSLDDPECVRAIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 372 pp~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+++...+.++.++. -.+...++|+.|...++++-|
T Consensus 299 ~~~~~~~R~a~~d~~-----l~G~~Ip~G~~V~~~~~a~~r 334 (417)
T 4dxy_A 299 FPVVSEARMVAKDQE-----YKGVFLKRGDMILLPTALHGL 334 (417)
T ss_dssp SCCBEEEEEECSCEE-----ETTEEECTTCEEEEETHHHHT
T ss_pred ccccccccccccceE-----ecCccccCCCEEEEeehhhcC
Confidence 776654433444433 346778888888777666544
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.77 E-value=2e-21 Score=185.65 Aligned_cols=258 Identities=13% Similarity=0.070 Sum_probs=154.4
Q ss_pred CCCC-CCcccccccchhhhh--ccCCchHHHHHHHhhcCCeEEEEcCCccEEEEeChHHHHHHHHhcCcccccCCCCCCC
Q 040489 33 LPPG-PFNLPVIGNLQWLLK--SFSEIEPILRNLHSKLGPVVTLFIGPRPAIFIADRSLAHKALVQNGAIFADRPRPLPT 109 (413)
Q Consensus 33 ~~Pg-P~~~pl~G~l~~~~~--~~~~~~~~~~~~~~kyG~i~~~~~g~~~~v~i~dpe~i~~il~~~~~~f~~r~~~~~~ 109 (413)
+||| |.+||++|+...+.. ...+++.++.+++++ ||++.. .+.+++++++.+++||.+ ..|.+++.....
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCcccccc
Confidence 4667 447899998766432 234688899998866 898643 457999999999999975 357654321100
Q ss_pred c-----ccccCCCcceEeccCChhHHHHHHHHhhhhcCHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCcccchHHHH-
Q 040489 110 S-----KIVSSNQHNISSASYGTTWRLFRRNLSAEILHPSRVKSYKHARKWVLEILLNHLKSESKNGDRPVPVRVLDHF- 183 (413)
Q Consensus 110 ~-----~~~~~~~~~i~~~~~g~~w~~~Rk~~~~~~~s~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~- 183 (413)
. ..+...+.++.+ .+|+.| .+.|+ . .+.+++.++.+++.|. | .+|+...+
T Consensus 108 ~~~~~~~~~~~~~~~l~~-~dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~-----g----~~Dl~~~~a 163 (381)
T 2yjn_B 108 WMRAAGAPPAEWAQPFRD-VHAASW--------EGEVP-----D-VGELAESFAGLLPGAG-----A----RLDLVGDFA 163 (381)
T ss_dssp HHHHHTCCHHHHTHHHHH-HHHCCC--------CSCCC-----C-CSCHHHHTSTTSCC---------------CCCCCC
T ss_pred cccccccccchhhhhhhh-CCchhh--------hhccC-----C-hHHHHHHHHHHHHhcc-----C----cchHHHHHH
Confidence 0 000000123333 468888 35677 2 5566666777766654 2 47877665
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhcCCcccccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040489 184 QYAMFCLLVLMCFGDKLDESQIKKIENVQRTQLLAFGNFNILNFWPRLSKIVFVKKWEQFLQMRRDQENVLVPLIRARKK 263 (413)
Q Consensus 184 ~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~r~~ 263 (413)
..+++++|+++ ||.+.++. .+.. . +.. ..+ ++ + .. ...+ +..
T Consensus 164 ~~l~~~vi~~l-~G~~~~~~---~~~~---~----~~~--~~~-~~-~---~~-~~~~------------------~~~- 205 (381)
T 2yjn_B 164 WQVPVQGMTAV-LGAAGVLR---GAAW---D----ARV--SLD-AQ-L---SP-QQLA------------------VTE- 205 (381)
T ss_dssp THHHHHHHHTC------CCH---HHHH---H----HTT--HHH-HT-T---SC-CCHH------------------HHH-
T ss_pred HHHHHHHHHHH-cCCCHHHH---HHHH---H----HHH--hcc-CC-C---CH-HHHH------------------HHH-
Confidence 69999999995 99887543 1111 1 000 000 00 0 00 0000 000
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhccCCcccCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHH
Q 040489 264 MKEEESLSIKEREYVLSYVDTLLDLQLPEEKRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIR 343 (413)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~ld~ll~~~~~~~~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~ 343 (413)
+.++.++ + +++..+++||+|||+++++|++++|++||++|+|+++|++
T Consensus 206 ----------------~~~~~l~------------~----~~~~~ll~aG~eTt~~~l~~~l~~L~~~P~~~~~l~~e~~ 253 (381)
T 2yjn_B 206 ----------------AAVAALP------------A----DPALRALFAGAEMTANTVVDAVLAVSAEPGLAERIADDPA 253 (381)
T ss_dssp ----------------HHHHHCC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC
T ss_pred ----------------HHHHHHH------------H----HHHHHHHHHhhhHHHHHHHHHHHHHHHCHHHHHHHhhCHH
Confidence 0111111 0 5789999999999999999999999999999999999852
Q ss_pred hhhcCCCCCCCCCChhHHHhhhccccccCCCCCCCcchhh-hhhhccccccccccccccccceeeeeeec
Q 040489 344 GVVGENEEGPKYRVPLFLFICIPDLRIHMHLSLDDPECVR-AIWYSEKEDKESFWNKSTVVEATYINIVR 412 (413)
Q Consensus 344 ~v~g~~~~~~~~~lpyl~avikEtlRl~pp~~~~~pr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|+.+||+|+||++||++. ++|.+. ++.+ .+...++++.|....+++-|
T Consensus 254 ---------------~l~~~i~E~LR~~pp~~~-~~R~a~~d~~l-----~G~~Ip~G~~V~~~~~~~~r 302 (381)
T 2yjn_B 254 ---------------AAQRTVAEVLRLHPALHL-ERRTATAEVRL-----GEHVIGEGEEVVVVVAAANR 302 (381)
T ss_dssp -----------------HHHHHHHHHHSCSCSE-EEEEESSCEES-----SSCEECTTCEEEEEHHHHTT
T ss_pred ---------------HHHHHhCeeeeecCCCcc-eeEEECCCeEE-----CCEEECCCCEEEeCHHHHcC
Confidence 999999999999999997 556554 3333 45677777777766655443
No 78
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=69.34 E-value=17 Score=26.78 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=41.2
Q ss_pred CCCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEc---C---CccEEEEeChHHHHHHHH
Q 040489 33 LPPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFI---G---PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 33 ~~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~---g---~~~~v~i~dpe~i~~il~ 94 (413)
.+|.|..--++||++.-. -.+.+.+++.+||+|..+.+ + +.-.|-..+++.+...+.
T Consensus 3 ~~~~~~~~l~V~nlp~~~-----t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKI-----TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp CCTTCCSEEEEESCCTTC-----CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHH
Confidence 456666556789987532 24568899999999987766 2 245788889998888875
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.63 E-value=16 Score=26.64 Aligned_cols=50 Identities=10% Similarity=-0.004 Sum_probs=36.5
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC--------CccEEEEeChHHHHHHHHh
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG--------PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g--------~~~~v~i~dpe~i~~il~~ 95 (413)
-++||++.-. -.+.+.+++.+||+|..+.+. +--.|...+++.++.++..
T Consensus 14 lfV~~Lp~~~-----te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 14 VYIKGFPTDA-----TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp EEEECCCTTC-----CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTS
T ss_pred EEEECCCCCC-----CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHc
Confidence 3578887532 245688899999998776653 2356788899999998853
No 80
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.81 E-value=13 Score=26.93 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcC-CeEEEEcCCccEEEEeChHHHHHHHHh-cCcccccCC
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLG-PVVTLFIGPRPAIFIADRSLAHKALVQ-NGAIFADRP 104 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG-~i~~~~~g~~~~v~i~dpe~i~~il~~-~~~~f~~r~ 104 (413)
-.++||..-.. .......+.+++.+|| +|..+ .++.-.|...+.+.++..+.. ++..+.+|+
T Consensus 12 lYV~NL~~~~~-~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 12 LYVYNLPANKD-GKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp EEEESCCTTSC-HHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCcCC-HHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34899876432 1223445888999995 88876 578999999999999888743 444444444
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=53.72 E-value=16 Score=24.35 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=34.8
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHhcC
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQNG 97 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~~~ 97 (413)
++||++.-. -.+.+.++..+||+|..+.+. +--.|-..+++.++..+..++
T Consensus 3 ~v~nLp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 62 (75)
T 1iqt_A 3 FVGGLSPDT-----PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62 (75)
T ss_dssp EESCCCSSC-----CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS
T ss_pred EEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC
Confidence 356665332 245688899999998776652 234677889999999885433
No 82
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=52.33 E-value=19 Score=26.43 Aligned_cols=69 Identities=22% Similarity=0.143 Sum_probs=41.4
Q ss_pred CCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC----------CccEEEEeChHHHHHHHHh-cCccccc
Q 040489 34 PPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG----------PRPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 34 ~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g----------~~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
.|.|...-+++|+..-.....+..+.+.+.+.+||+|..+++. +.-.|-..+++.+...+.. ++..|.+
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3455556677887642111123567788899999998776642 1235667788877776643 4444443
No 83
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=49.16 E-value=34 Score=25.70 Aligned_cols=67 Identities=24% Similarity=0.197 Sum_probs=42.2
Q ss_pred CCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-------------CccEEEEeChHHHHHHHHh-cCccccc
Q 040489 37 PFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-------------PRPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 37 P~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-------------~~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
|...-++.|+..-.....+..+-+.+.+.+||+|..+++. +.-.|-..+++.+...+.. ++..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4445567888654322345677888999999998776542 1235666788877776633 4444444
Q ss_pred C
Q 040489 103 R 103 (413)
Q Consensus 103 r 103 (413)
|
T Consensus 99 R 99 (118)
T 3ue2_A 99 R 99 (118)
T ss_dssp E
T ss_pred c
Confidence 3
No 84
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=47.68 E-value=39 Score=24.06 Aligned_cols=51 Identities=25% Similarity=0.213 Sum_probs=36.3
Q ss_pred CcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---ccEEEEeChHHHHHHH
Q 040489 38 FNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---RPAIFIADRSLAHKAL 93 (413)
Q Consensus 38 ~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---~~~v~i~dpe~i~~il 93 (413)
.+|-++||+..-. -.+.+.+++.+||+|..+++.. --.|-..+++.+++..
T Consensus 7 ~~wL~VgNL~~~~-----te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai 60 (89)
T 2wbr_A 7 SSWLLLKNLTAQI-----DGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQ 60 (89)
T ss_dssp CCEEEEECCCTTC-----CCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHH
T ss_pred cceEEEeCCCccC-----CHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHH
Confidence 3566789987543 2467999999999998877643 2467777887666665
No 85
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.12 E-value=67 Score=22.29 Aligned_cols=59 Identities=27% Similarity=0.379 Sum_probs=39.7
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHh-cCcccccC
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQ-NGAIFADR 103 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~-~~~~f~~r 103 (413)
--++||+..-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++.++.. ++..+.++
T Consensus 7 ~l~v~nlp~~~-----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 7 GLYVGSLHFNI-----TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp EEEEESCCTTC-----CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 34578886532 2456889999999987766532 346778899999988853 44444443
No 86
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.44 E-value=61 Score=23.68 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=39.9
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---CccEEEEeChHHHHHHHHh-cCcccccC
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---PRPAIFIADRSLAHKALVQ-NGAIFADR 103 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---~~~~v~i~dpe~i~~il~~-~~~~f~~r 103 (413)
-++||+..- .-.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.. ++..+.++
T Consensus 13 l~V~nLp~~-----~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 13 ILAKNLPAG-----TLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEESCCTT-----CCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred EEEeCCCCC-----CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 357887643 2355789999999999887763 3457888899988887743 44444443
No 87
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=46.26 E-value=31 Score=24.74 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=35.1
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-----C----ccEEEEeChHHHHHHHHh
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-----P----RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-----~----~~~v~i~dpe~i~~il~~ 95 (413)
++|||+.-. -.+.+.+++.+||+|..+.+. + --.|-..+++.++..+..
T Consensus 23 fV~nLp~~~-----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 23 IVNYLPQNM-----TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EEESCCTTC-----CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCC-----CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 578887543 245788999999998776652 1 136778899998888743
No 88
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=46.04 E-value=25 Score=23.37 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=32.6
Q ss_pred cccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHH
Q 040489 43 IGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALV 94 (413)
Q Consensus 43 ~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~ 94 (413)
+||++.-. -.+.+.++..+||+|..+.+.. --.|-..+++.++.++.
T Consensus 4 v~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 4 VGGLSVNT-----TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EECCCSSC-----CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EecCCCCC-----CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 56665432 2456888999999987766531 24577789999988874
No 89
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=45.75 E-value=37 Score=25.07 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=38.5
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC-------ccEEEEeChHHHHHHHHh-cCccccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP-------RPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~-------~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
++|||..-. -.+.+.+++.+||+|..+.+.. --.|-..+++.++..+.. ++..+.+
T Consensus 9 fV~nLp~~~-----te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 9 FIKNLDKSI-----DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp EEESCCTTC-----CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred EECCCCCCC-----CHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 678887532 2457899999999987665421 247888999999988753 4433433
No 90
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=45.49 E-value=18 Score=27.04 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=42.5
Q ss_pred CCCCCcccccccchhhhhc-----cCCchHHHHHHHhhcCCeEEEEcC-----CccEEEEeChHHHHHHHHh-cCccccc
Q 040489 34 PPGPFNLPVIGNLQWLLKS-----FSEIEPILRNLHSKLGPVVTLFIG-----PRPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 34 ~PgP~~~pl~G~l~~~~~~-----~~~~~~~~~~~~~kyG~i~~~~~g-----~~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
+|-|...-++.|++..... ..+..+.+.+.+.+||.|..+.+. |.-.|-..+++.+...+.. ++..|.+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4666666667777665321 112444567788899998877663 3346667788877776633 4444433
No 91
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=44.34 E-value=51 Score=23.93 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=32.1
Q ss_pred hHHHHHHHhhcCCeEEEEcCC-ccEEEEeChHHHHHHHH
Q 040489 57 EPILRNLHSKLGPVVTLFIGP-RPAIFIADRSLAHKALV 94 (413)
Q Consensus 57 ~~~~~~~~~kyG~i~~~~~g~-~~~v~i~dpe~i~~il~ 94 (413)
..-+.+++..||.+..-|+.. ...+++.+|+.+++++.
T Consensus 29 t~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 456899999999888878854 57899999999999985
No 92
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.97 E-value=52 Score=22.86 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=38.9
Q ss_pred CCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC------C---ccEEEEeChHHHHHHHHh
Q 040489 34 PPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG------P---RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 34 ~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g------~---~~~v~i~dpe~i~~il~~ 95 (413)
.|.|..--++||++.-. -.+.+.+++.+||+|..+.+. . .-.|-..+++.++.++..
T Consensus 11 ~~~~~~~l~v~nlp~~~-----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYT-----TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp SCCGGGCEEEESCCSSC-----CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCC-----CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 34444445678887532 245688999999998776652 1 246778899999988853
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=42.64 E-value=68 Score=23.81 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=40.1
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHh-cCcccccC
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQ-NGAIFADR 103 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~-~~~~f~~r 103 (413)
-+||||..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 25 l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 25 LFVTGVHEEA-----TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp EEEESCCTTC-----CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 4678876432 245688899999999877762 2347888899999988843 44445443
No 94
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=42.52 E-value=55 Score=24.08 Aligned_cols=58 Identities=12% Similarity=-0.004 Sum_probs=40.2
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC--CccEEEEeChHHHHHHHHh-cCcccccC
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG--PRPAIFIADRSLAHKALVQ-NGAIFADR 103 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g--~~~~v~i~dpe~i~~il~~-~~~~f~~r 103 (413)
-++|||..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.. ++..+.++
T Consensus 19 l~V~nLp~~~-----t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 19 VVVSGLPPSG-----SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp EEEEECCSSC-----CTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3678887432 234688899999998877663 4567888899988888753 44445444
No 95
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=42.09 E-value=59 Score=23.21 Aligned_cols=49 Identities=8% Similarity=0.065 Sum_probs=35.2
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHH
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~ 94 (413)
-++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.+...+.
T Consensus 26 l~V~nlp~~~-----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 26 LFVTGVHEEA-----TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp EEEECCCTTC-----CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCCC-----CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 3578876532 245688999999998776652 224677889999888885
No 96
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=41.90 E-value=81 Score=22.36 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=36.3
Q ss_pred ccccccchhhhhcc-CCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHH
Q 040489 40 LPVIGNLQWLLKSF-SEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 40 ~pl~G~l~~~~~~~-~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~ 94 (413)
.-++||++...... ....+.+.+++.+||+|..+.+. +--.|-..+++.++..+.
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 72 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIK 72 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 34678877521100 11245688899999999887763 234688889999888874
No 97
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.84 E-value=74 Score=22.55 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=41.5
Q ss_pred CCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-------CccEEEEeChHHHHHHHHh-cCccccc
Q 040489 35 PGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-------PRPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 35 PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-------~~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
+.+..--++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 12 ~~~~~~l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGI-----DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp CSSCCCEEEECCCTTC-----CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCEEEEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3344445688887542 245688888999998776653 2346778899999988853 4434433
No 98
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=41.21 E-value=66 Score=22.57 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=40.0
Q ss_pred cccccchh-hhhccCCchHHHHHHHhhcCCeEEEEcC-CccEEEEeChHHHHHHHHh-cCcccccC
Q 040489 41 PVIGNLQW-LLKSFSEIEPILRNLHSKLGPVVTLFIG-PRPAIFIADRSLAHKALVQ-NGAIFADR 103 (413)
Q Consensus 41 pl~G~l~~-~~~~~~~~~~~~~~~~~kyG~i~~~~~g-~~~~v~i~dpe~i~~il~~-~~~~f~~r 103 (413)
-++||++. -. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.. ++..+.++
T Consensus 13 l~V~nlp~~~~-----t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 13 LFIGNLPLKNV-----SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp EEEESSTTSCC-----CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred EEEeCCCcccC-----CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 35788874 32 245688999999998776653 4457888899999988863 44444333
No 99
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=41.20 E-value=1.1e+02 Score=22.96 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=37.9
Q ss_pred CCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHh
Q 040489 37 PFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 37 P~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~ 95 (413)
|..--++|||..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 45 ~~~~l~V~nLp~~~-----te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 45 PNCCLGVFGLSLYT-----TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CSSCBCEETCTTSC-----CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 33344678887542 245688999999998877653 1346778899999988853
No 100
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=39.93 E-value=53 Score=22.87 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=36.4
Q ss_pred CCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC----CccEEEEeChHHHHHH
Q 040489 35 PGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG----PRPAIFIADRSLAHKA 92 (413)
Q Consensus 35 PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g----~~~~v~i~dpe~i~~i 92 (413)
+.|...-++||+..-. -.+.+.+++.+||+|..+.+. |--.|-..+++.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~-----te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDM-----TAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp ---CCEEEEESCCTTC-----CHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCC-----CHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 3344444689987543 245789999999999888764 3457888899988853
No 101
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.82 E-value=75 Score=22.28 Aligned_cols=50 Identities=24% Similarity=0.160 Sum_probs=36.4
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHH
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALV 94 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~ 94 (413)
--++||++.-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++..+.
T Consensus 10 ~l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 10 RLFVRNLSYTS-----SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp EEEEECCCTTC-----CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 34678887532 2456889999999998877632 34788889999998884
No 102
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=38.14 E-value=90 Score=20.97 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=36.9
Q ss_pred CcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHH
Q 040489 38 FNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 38 ~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~ 94 (413)
..--++||++.-. -.+.+.++..+||+|..+.+. +.-.|-..+++.++..+.
T Consensus 7 ~~~l~V~nl~~~~-----~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 7 KRVLYVGGLAEEV-----DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp SSEEEEECCCTTC-----CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCCCCC-----CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHH
Confidence 3344678887432 245788999999999877652 124778889999888874
No 103
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.92 E-value=81 Score=22.41 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=40.7
Q ss_pred cccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHhcCcccccC
Q 040489 39 NLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQNGAIFADR 103 (413)
Q Consensus 39 ~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~~~~~f~~r 103 (413)
.--++|||..-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++.++..++..+.++
T Consensus 17 ~~l~V~nlp~~~-----t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 85 (105)
T 2dh8_A 17 GKLFVGGLDWST-----TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 85 (105)
T ss_dssp SEECCBSCCTTC-----CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTE
T ss_pred CEEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 334678887542 2456889999999987665422 24677889999999886655444443
No 104
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=36.39 E-value=1.1e+02 Score=21.87 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=41.0
Q ss_pred ccccccchhhhhcc-CCchHHHHHHHhhcCCeEEEEcC-------CccEEEEeChHHHHHHHHh-cCccccc
Q 040489 40 LPVIGNLQWLLKSF-SEIEPILRNLHSKLGPVVTLFIG-------PRPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 40 ~pl~G~l~~~~~~~-~~~~~~~~~~~~kyG~i~~~~~g-------~~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
--++||++.-.... ....+.+.+++.+||+|..+.+. +--.|-..+++.++..+.. ++..+.+
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34689887532100 00346789999999999887764 3346778888888888754 4444433
No 105
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=36.19 E-value=83 Score=21.30 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=37.0
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC----------CccEEEEeChHHHHHHHHh-cCccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG----------PRPAIFIADRSLAHKALVQ-NGAIF 100 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g----------~~~~v~i~dpe~i~~il~~-~~~~f 100 (413)
++||+..-. -.+.+.++..+||+|..+.+. +.-.|-..+++.++..+.. ++..+
T Consensus 8 ~V~nlp~~~-----t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (88)
T 4a8x_A 8 HIGRLTRNV-----TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI 72 (88)
T ss_dssp EEECCCTTC-----CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCCC-----CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE
Confidence 577776432 245688899999998776652 2346788899999988853 44333
No 106
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=35.99 E-value=51 Score=25.28 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=39.2
Q ss_pred CCCCCc--ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC-----ccEEEEeChHHHHHHHHh-cCcccc
Q 040489 34 PPGPFN--LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP-----RPAIFIADRSLAHKALVQ-NGAIFA 101 (413)
Q Consensus 34 ~PgP~~--~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~-----~~~v~i~dpe~i~~il~~-~~~~f~ 101 (413)
.++|.. .-.+||+..-. -.+.+.+++.+||+|-.+.+.. +-.|-..|++.++..+.. ++..+.
T Consensus 22 ~~~ps~VL~I~V~NL~~~v-----te~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~ 92 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPV-----TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 92 (130)
T ss_dssp ---CCSEEEEEEESCCSCC-----CHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE
T ss_pred cCCCCceEEEEECCCCCCC-----CHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec
Confidence 344443 33589986432 2457899999999988776532 357888888877776632 444443
No 107
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.96 E-value=1.1e+02 Score=21.49 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=39.4
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-------CccEEEEeChHHHHHHHHh-cCccccc
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-------PRPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-------~~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
--++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 17 ~l~V~nlp~~~-----t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 17 RLHVSNIPFRF-----RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp EEEEESCCTTC-----CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34678886532 245688999999998776653 2357778899999988853 4433433
No 108
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.62 E-value=1.2e+02 Score=21.50 Aligned_cols=51 Identities=24% Similarity=0.243 Sum_probs=37.5
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHh
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~ 95 (413)
--++||+..-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 17 ~l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 17 TVYVGGLDEKV-----SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp EEEEECCCTTC-----CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 34678887532 2456899999999998777632 346888999999998864
No 109
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.62 E-value=79 Score=23.13 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=39.3
Q ss_pred CCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---CccEEEEeChHHHHHHHH
Q 040489 35 PGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 35 PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---~~~~v~i~dpe~i~~il~ 94 (413)
|.|..--++|||..-. -.+.+.+++.+||.|..+.+. +.-.|-..+++.+...+.
T Consensus 13 ~~~~~~LfV~nLp~~v-----te~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDV-----TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CCCCCEEEECSCCTTS-----CHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 3344444689987542 245688999999999877764 345788889998888875
No 110
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=35.59 E-value=82 Score=22.62 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=36.0
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHH
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~ 94 (413)
-++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.+...+.
T Consensus 29 l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 29 LFVTSIHEEA-----QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp EEEESCCTTC-----CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 3578876532 245688999999999877763 234777889999988875
No 111
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=34.96 E-value=27 Score=17.58 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHh
Q 040489 333 HVQETVYTEIRG 344 (413)
Q Consensus 333 ~vq~Kl~eEi~~ 344 (413)
..|.|+|.|+++
T Consensus 8 nlqkkirkelkq 19 (26)
T 1m46_B 8 NLQKKIRKELKQ 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999999875
No 112
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=34.88 E-value=58 Score=21.89 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=33.9
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHh
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~ 95 (413)
++||++.-. -.+.+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 5 ~V~nlp~~~-----t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 5 FVGDLNVNV-----DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp EEECCCTTC-----CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCCC-----CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 356665432 245688889999998776542 1247888899999988853
No 113
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.84 E-value=1.2e+02 Score=21.46 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=40.6
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCCc----------cEEEEeChHHHHHHHHh--cCcccccC
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGPR----------PAIFIADRSLAHKALVQ--NGAIFADR 103 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~----------~~v~i~dpe~i~~il~~--~~~~f~~r 103 (413)
--++||++.-. -.+.+.+++.+||+|..+.+... -.|-..+++.++..+.. ++..+.++
T Consensus 17 ~l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 17 KILVRNIPFQA-----NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp CEEEESCCTTC-----CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred EEEEeCCCCcC-----CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 34678887542 24568899999999988776332 46778899999988854 34444443
No 114
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=34.25 E-value=90 Score=22.59 Aligned_cols=48 Identities=27% Similarity=0.235 Sum_probs=32.0
Q ss_pred chHHHHHHHhhcCCeEEEEcC-----------CccEEEEeChHHHHHHHHh-cCcccccC
Q 040489 56 IEPILRNLHSKLGPVVTLFIG-----------PRPAIFIADRSLAHKALVQ-NGAIFADR 103 (413)
Q Consensus 56 ~~~~~~~~~~kyG~i~~~~~g-----------~~~~v~i~dpe~i~~il~~-~~~~f~~r 103 (413)
..+-+.+.+.+||+|..+.+. +.-.|-..+++.+...+.. ++..|.+|
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR 87 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 87 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 345678888999999888763 2235777888887777633 44444433
No 115
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=34.21 E-value=57 Score=22.31 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=35.5
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHhcCccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQNGAIF 100 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~~~~~f 100 (413)
++||++.-. -.+.+.++..+||+|..+.+.. .-.|-..+++.++.++.-++..+
T Consensus 10 ~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~ 72 (89)
T 3ucg_A 10 YVGNVDYGA-----TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 72 (89)
T ss_dssp EEESCCTTC-----CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEE
T ss_pred EEeCCCCCC-----CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEE
Confidence 467765432 2456888999999987765421 24677888998888873344333
No 116
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=34.15 E-value=99 Score=21.45 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=36.6
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC------CccEEEEeChHHHHHHHHh
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG------PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g------~~~~v~i~dpe~i~~il~~ 95 (413)
--++||++.-.. ..++.+.+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 10 ~l~V~nLp~~~~-~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 10 TIYINNLNEKIK-KDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEEEESCCTTSC-HHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCC-HHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 346788875331 111223344899999999877654 4457888999998888753
No 117
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=34.04 E-value=80 Score=22.42 Aligned_cols=56 Identities=25% Similarity=0.231 Sum_probs=39.3
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-CccEEEEeChHHHHHHHHh-cCcccc
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-PRPAIFIADRSLAHKALVQ-NGAIFA 101 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-~~~~v~i~dpe~i~~il~~-~~~~f~ 101 (413)
-++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.. ++..+.
T Consensus 14 l~V~nl~~~~-----t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 14 LFVRNLANTV-----TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp EEEECCCTTC-----CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 4678887532 245688999999999887763 3457778899999988853 443343
No 118
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=33.94 E-value=61 Score=22.09 Aligned_cols=52 Identities=27% Similarity=0.327 Sum_probs=36.5
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHhc
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQN 96 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~~ 96 (413)
--++||++.-. -.+.+.+++.+||+|..+.+. +--.|-..+++.++..+..+
T Consensus 13 ~l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 13 KMFVGGLSWDT-----SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp EEEEECCCTTC-----CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 34678887532 345688999999998776652 12467788999999888543
No 119
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.25 E-value=67 Score=22.77 Aligned_cols=50 Identities=22% Similarity=0.200 Sum_probs=36.2
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC-------ccEEEEeChHHHHHHHH
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP-------RPAIFIADRSLAHKALV 94 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~-------~~~v~i~dpe~i~~il~ 94 (413)
--++||++.-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++..+.
T Consensus 17 ~l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 17 TLYVGNLSRDV-----TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEEEESCCTTC-----CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCccC-----CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 34678887532 2456889999999987766532 34677889999988875
No 120
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.76 E-value=60 Score=23.62 Aligned_cols=51 Identities=16% Similarity=0.032 Sum_probs=35.1
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHhcC
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQNG 97 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~~~ 97 (413)
++||+..-. -.+.+.+++.+||.|..+.+. +.-.|-..+++.++.++.-++
T Consensus 29 ~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 88 (114)
T 2cq4_A 29 FCMQLAARI-----RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG 88 (114)
T ss_dssp EEESCCTTC-----CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTT
T ss_pred EEeCCCCCC-----CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCC
Confidence 467776432 245688999999999877763 234677788888888873333
No 121
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.59 E-value=1.3e+02 Score=21.06 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=36.5
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC--------CccEEEEeChHHHHHHHHh
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG--------PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g--------~~~~v~i~dpe~i~~il~~ 95 (413)
--++||++.-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 19 ~l~v~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 19 KLFISGLPFSC-----TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CEEEESCCTTC-----CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 34678887532 245688999999998776653 2347788899999888843
No 122
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=32.47 E-value=78 Score=21.41 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=35.4
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHh
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~ 95 (413)
-++||+..-. -.+.+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 9 l~v~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 9 VFVGDLSPEI-----TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEEESCCTTC-----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3578886532 2456889999999987766521 246778899999988853
No 123
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=32.21 E-value=1.2e+02 Score=20.69 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=38.6
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-------CccEEEEeChHHHHHHHHh-cCcccccC
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-------PRPAIFIADRSLAHKALVQ-NGAIFADR 103 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-------~~~~v~i~dpe~i~~il~~-~~~~f~~r 103 (413)
-++||++.-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.. ++..+.++
T Consensus 11 l~V~nlp~~~-----t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 11 IFVRNLPFDF-----TWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp EEECSCCTTC-----CHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3678887432 245688999999998766543 2346777899998888753 44344433
No 124
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=32.20 E-value=83 Score=25.23 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=37.2
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-----CccEEEEeChHHHHHHHHh-cCccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-----PRPAIFIADRSLAHKALVQ-NGAIF 100 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-----~~~~v~i~dpe~i~~il~~-~~~~f 100 (413)
++||+..- --.+.+.+++.+||.|-.+++. +.-.|-..|++.+++.+.. ++..+
T Consensus 50 ~VgNL~~~-----vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 50 IVENLFYP-----VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp EECSCCSC-----CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred EEeCcCCC-----CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 47888642 2245789999999998877763 2357888899888877753 34334
No 125
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=31.55 E-value=55 Score=24.25 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=36.2
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHhcCcccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQNGAIFA 101 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~~~~~f~ 101 (413)
++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.-++..+.
T Consensus 40 ~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~ 103 (124)
T 2jwn_A 40 YVGNVDYGS-----TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFR 103 (124)
T ss_dssp EEEEECTTC-----CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEET
T ss_pred EEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeEC
Confidence 456665332 355788999999998766552 1246788899999988833343343
No 126
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.39 E-value=1e+02 Score=21.58 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=35.0
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC------CccEEEEeChHHHHHHHH
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g------~~~~v~i~dpe~i~~il~ 94 (413)
-++||+..-.. ..++...+.+++.+||+|..+.+. +.-.|-..+++.++..+.
T Consensus 12 l~V~nL~~~~~-~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~ 70 (96)
T 2dgx_A 12 VQVSNIDYRLS-RKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVN 70 (96)
T ss_dssp EEEESCCTTSC-HHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHH
T ss_pred EEEECCCCCCC-HHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHH
Confidence 46788875432 112222334899999999877764 234677789998888875
No 127
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.27 E-value=1.3e+02 Score=20.89 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=40.3
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHhcCcccccC
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQNGAIFADR 103 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~~~~~f~~r 103 (413)
--++||+..-. -.+.+.+++.+||+|..+.+. +--.|-..+++.++..+.-++..+.++
T Consensus 12 ~l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 79 (99)
T 2dgs_A 12 KIFVGGIPHNC-----GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 79 (99)
T ss_dssp EEEEESCCSSC-----CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSC
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCe
Confidence 34678886532 245688999999998877663 124677889999998886444444433
No 128
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.12 E-value=1.3e+02 Score=20.66 Aligned_cols=52 Identities=25% Similarity=0.244 Sum_probs=37.4
Q ss_pred CcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHH
Q 040489 38 FNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALV 94 (413)
Q Consensus 38 ~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~ 94 (413)
..--++||++.-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++..+.
T Consensus 16 ~~~l~V~nlp~~~-----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 16 KSTVYVSNLPFSL-----TNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp TTSEEEESCCTTS-----CHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCCCC-----CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 3344678887432 2456889999999988776632 34788899999988884
No 129
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=31.02 E-value=1.3e+02 Score=21.57 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=35.3
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHH
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~ 94 (413)
-++||+..-. -.+.+.+++.+||+|..+.+. +...|-..+++.++.++.
T Consensus 29 l~V~nLp~~~-----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 29 LYVGSLHFNI-----TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp EEEECCCSSC-----CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 3678886432 245688999999998766542 234678889999998884
No 130
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.96 E-value=1.3e+02 Score=20.84 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=35.2
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---CccEEEEeChHHHHHHHHh
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---~~~~v~i~dpe~i~~il~~ 95 (413)
--++||+ .. -.+.+.+++.+||+|..+.++ +.-.|-..+++.+...+..
T Consensus 17 ~l~V~n~-~~------t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 17 TLYVYGE-DM------TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp EEEEECS-SC------CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEcCC-CC------CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 3457883 21 245789999999999887775 3346777899988888854
No 131
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=30.94 E-value=1.2e+02 Score=20.23 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=29.7
Q ss_pred hHHHHHHHhhcCCeEEEEcC-------CccEEEEeChHHHHHHHH
Q 040489 57 EPILRNLHSKLGPVVTLFIG-------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 57 ~~~~~~~~~kyG~i~~~~~g-------~~~~v~i~dpe~i~~il~ 94 (413)
.+.+.+++.+||+|..+.+. +--.|-..+++.++..+.
T Consensus 21 ~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~ 65 (81)
T 2krb_A 21 KNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVK 65 (81)
T ss_dssp HHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHT
T ss_pred HHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHH
Confidence 46788899999999887764 234677889999988884
No 132
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.78 E-value=1e+02 Score=21.41 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=38.3
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC------------CccEEEEeChHHHHHHHHh-cCcccc
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG------------PRPAIFIADRSLAHKALVQ-NGAIFA 101 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g------------~~~~v~i~dpe~i~~il~~-~~~~f~ 101 (413)
-++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.. ++..+.
T Consensus 8 l~V~nLp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 8 LFIKNLNFST-----TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp EEEESCCTTC-----CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3578887532 245688999999998766543 2346778899999998864 333333
No 133
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=30.76 E-value=59 Score=23.01 Aligned_cols=48 Identities=25% Similarity=0.190 Sum_probs=33.8
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC----CccEEEEeChHHHHHHHH
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG----PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g----~~~~v~i~dpe~i~~il~ 94 (413)
++||++.-. -.+.+.++..+||+|..+.+. +.-.|-..+++.++..+.
T Consensus 4 ~V~nLp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~ 55 (101)
T 2hvz_A 4 YVGNLGTGA-----GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVR 55 (101)
T ss_dssp EEECCCSSC-----SHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHH
T ss_pred EEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHH
Confidence 356765432 245688899999998766653 345677789998888875
No 134
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=30.74 E-value=1.1e+02 Score=23.01 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=38.7
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC------CccEEEEeChHHHHHHHHh-cCcccccC
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG------PRPAIFIADRSLAHKALVQ-NGAIFADR 103 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g------~~~~v~i~dpe~i~~il~~-~~~~f~~r 103 (413)
-++|||..-.. ..++-+.+.+++.+||+|..+.+. |.-.|-..+++.+...+.. ++..+.++
T Consensus 32 LfV~nL~~~~~-e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 32 VLITNINPEVP-KEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp EEEESCCTTSC-HHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred EEEeCCCCCCC-HHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 46788874321 112223466789999999877652 3457888899988888743 33334333
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.69 E-value=1.5e+02 Score=21.21 Aligned_cols=50 Identities=12% Similarity=-0.063 Sum_probs=37.2
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC--CccEEEEeChHHHHHHHHh
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG--PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g--~~~~v~i~dpe~i~~il~~ 95 (413)
-++|||..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 18 l~V~nLp~~~-----t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 18 VVVSGLPPSG-----SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEEESCCSSC-----CHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 3678887432 356789999999998776653 4567888899999888853
No 136
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.28 E-value=1.3e+02 Score=21.11 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=39.2
Q ss_pred cccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHh-cCccccc
Q 040489 39 NLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 39 ~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
.--++||++.-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+
T Consensus 13 ~~l~v~nLp~~~-----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 13 GKLFVGGLSFDT-----NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp SEEEEESCCTTC-----CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred CEEEEECCCCCC-----CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344678887532 2456888999999987766532 346777889988888743 4433433
No 137
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=29.96 E-value=1e+02 Score=22.27 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=37.7
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHhcC
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQNG 97 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~~~ 97 (413)
--++||+..-. -.+.+.+++.+||+|..+.+.. --.|-..+++.++..+...+
T Consensus 27 ~lfV~nLp~~~-----te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 27 KMFIGGLSWQT-----TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp CEEEESCCTTC-----CHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 34678886432 2456889999999987776532 24788899999999886543
No 138
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=29.89 E-value=1.4e+02 Score=20.98 Aligned_cols=49 Identities=20% Similarity=0.183 Sum_probs=36.0
Q ss_pred cccccchh-hhhccCCchHHHHHHHhhcCCeEEEEcC-CccEEEEeChHHHHHHHH
Q 040489 41 PVIGNLQW-LLKSFSEIEPILRNLHSKLGPVVTLFIG-PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 41 pl~G~l~~-~~~~~~~~~~~~~~~~~kyG~i~~~~~g-~~~~v~i~dpe~i~~il~ 94 (413)
-++||+.. -. -.+.+.+++.+||+|..+.+. +--.|-..+++.++..+.
T Consensus 25 l~V~nLp~~~~-----t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~ 75 (97)
T 2xnq_A 25 LFIGNLPLKNV-----SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIE 75 (97)
T ss_dssp EEEESCCSSCC-----CHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCcccC-----CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHH
Confidence 35788763 22 245688999999999877763 345777889999888885
No 139
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=29.76 E-value=96 Score=22.58 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=35.8
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-----C----ccEEEEeChHHHHHHHH
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-----P----RPAIFIADRSLAHKALV 94 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-----~----~~~v~i~dpe~i~~il~ 94 (413)
-++|||..-. -.+.+.+++.+||+|..+.+. + --.|...+++.++..+.
T Consensus 9 lfV~nL~~~~-----te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~ 66 (110)
T 3s8s_A 9 VTFARLNDNV-----RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVK 66 (110)
T ss_dssp EEEESCCTTC-----CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEECCCCCC-----CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHH
Confidence 3678887532 256789999999998876652 1 23788889999998875
No 140
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.80 E-value=1.5e+02 Score=20.77 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=38.7
Q ss_pred CCCCcccccccchhhhhccCCchHHHHHHHhh-cCCeEEEEcC--------CccEEEEeChHHHHHHHHh
Q 040489 35 PGPFNLPVIGNLQWLLKSFSEIEPILRNLHSK-LGPVVTLFIG--------PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 35 PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~k-yG~i~~~~~g--------~~~~v~i~dpe~i~~il~~ 95 (413)
+.|..--++||+..-. -.+.+.+++.+ ||+|..+.+. +--.|-..+++.++..+..
T Consensus 6 ~~~~~~l~V~nLp~~~-----t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDV-----DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp SSCCCCEEEECCCTTC-----CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCC-----CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 3444444689887542 24568888899 9998776652 1246778899999988853
No 141
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.73 E-value=1.3e+02 Score=21.15 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=40.9
Q ss_pred CCCCCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC----------CccEEEEeChHHHHHHHHhcCccccc
Q 040489 34 PPGPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG----------PRPAIFIADRSLAHKALVQNGAIFAD 102 (413)
Q Consensus 34 ~PgP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g----------~~~~v~i~dpe~i~~il~~~~~~f~~ 102 (413)
++.|..--++||+..-. -.+.+.+++.+|| |..+.+. +--.|-..+++.++..+.-++..+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~-----t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g 83 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDV-----TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 83 (104)
T ss_dssp CSSSCEEEEEESCCSSC-----CHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETT
T ss_pred CCCCCCEEEEeCCCCcC-----CHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCC
Confidence 33444444678886432 2456888999999 8777653 12467888999999888434434433
No 142
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=28.72 E-value=1.3e+02 Score=21.07 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=35.1
Q ss_pred CCcccccccchhhhhccCCchHHHHHHHhhcCCeEE--------EEcC---------CccEEEEeChHHHHHHHH
Q 040489 37 PFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVT--------LFIG---------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 37 P~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~--------~~~g---------~~~~v~i~dpe~i~~il~ 94 (413)
|..--++||+..-. -.+.+.+++.+||.|.. +.+. +.-.|-..+++.++..+.
T Consensus 12 ~~~~l~V~nLp~~~-----t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 12 DNNTIFVQGLGENV-----TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp CCSEEEEECCCSSC-----CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC-----CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 33344678886532 24568899999998765 4431 123677788888888874
No 143
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=28.51 E-value=85 Score=24.74 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=37.7
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHh-cCccc
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQ-NGAIF 100 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~-~~~~f 100 (413)
-+||||+.-. -...+.+++.+||+|..+.+. +.-+|-..+++.++..+.. ++..+
T Consensus 75 l~V~nLp~~~-----t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 75 LFVTSIHEEA-----QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139 (165)
T ss_dssp EEEESCCTTC-----CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCCC-----CHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678876532 355788999999998776653 2346778889988888753 44333
No 144
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.38 E-value=1.6e+02 Score=20.86 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=39.7
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEE-EEcC--------CccEEEEeChHHHHHHHHhcCcccccC
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVT-LFIG--------PRPAIFIADRSLAHKALVQNGAIFADR 103 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~-~~~g--------~~~~v~i~dpe~i~~il~~~~~~f~~r 103 (413)
.-++|||+.-. -.+.+.+++.+||.|.. +.+. +.-.|-..+++.++..+..++..+.+|
T Consensus 17 ~l~V~nLp~~~-----te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr 84 (104)
T 1wg5_A 17 FVRLRGLPFGC-----SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 84 (104)
T ss_dssp EEEEESCCTTC-----CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSS
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCc
Confidence 34678887542 24568889999998754 4431 235788899999999986554444333
No 145
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.33 E-value=1.5e+02 Score=20.72 Aligned_cols=57 Identities=25% Similarity=0.261 Sum_probs=39.5
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHh-cCccccc
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
-++|||..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 16 l~V~nLp~~~-----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 16 LKVDNLTYRT-----SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp EEEESCCTTC-----CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4678887542 245688999999999877763 2347888889888888853 4444443
No 146
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.22 E-value=71 Score=21.59 Aligned_cols=50 Identities=22% Similarity=0.014 Sum_probs=34.9
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHH
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALV 94 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~ 94 (413)
--++||++.-. -.+.+.++..+||+|..+.+.. --.|-..+++.++..+.
T Consensus 7 ~l~v~nlp~~~-----t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQPGT-----TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEEESCCTTC-----CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 34678886532 2456788889999987766422 24677889998888875
No 147
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=28.10 E-value=2e+02 Score=22.09 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=39.8
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHh-cCccccc
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
--++||++.-. -.+.+.+++.+||+|..+.+.. --.|-..+++.++..+.. ++..+.+
T Consensus 72 ~l~v~nl~~~~-----~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 72 SLKVDNLTYRT-----SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp EEEEESCCTTC-----CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34678876532 2456888999999998777643 246788899999998854 4433433
No 148
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=27.76 E-value=94 Score=22.84 Aligned_cols=50 Identities=14% Similarity=-0.000 Sum_probs=36.5
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcC-CeEEEEcC-----CccEEEEeChHHHHHHHHh
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLG-PVVTLFIG-----PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG-~i~~~~~g-----~~~~v~i~dpe~i~~il~~ 95 (413)
-++|||..-. -.+.+.+++.+|| .|..+.+. +.-.|-..+++.++..+..
T Consensus 31 l~VgnLp~~~-----te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 31 ITMKNLPEGC-----SWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp EEEECSSCCC-----CHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCCC-----CHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 4679887532 3567899999999 77666653 3457888899999888843
No 149
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=27.43 E-value=1.1e+02 Score=21.80 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=35.7
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC--------CccEEEEeChHHHHHHHHh
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG--------PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g--------~~~~v~i~dpe~i~~il~~ 95 (413)
--++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 31 ~l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 31 KLLVSNLDFGV-----SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEEEESCCTTC-----CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34678876532 245688899999998766543 1346778899999888753
No 150
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.41 E-value=1.1e+02 Score=21.80 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=38.5
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---CccEEEEeChHHHHHHHHh-cCcccc
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---PRPAIFIADRSLAHKALVQ-NGAIFA 101 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---~~~~v~i~dpe~i~~il~~-~~~~f~ 101 (413)
-++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.+...+.. ++..+.
T Consensus 28 l~V~nl~~~~-----t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 28 VYCGGIASGL-----TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp EEEECCSSCC-----CHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3578876432 245688899999999877763 3457788899988888743 443333
No 151
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=27.28 E-value=30 Score=25.19 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=32.4
Q ss_pred hHHHHHHHhhcCCeEEEEcCC-ccEEEEeChHHHHHHHHh
Q 040489 57 EPILRNLHSKLGPVVTLFIGP-RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 57 ~~~~~~~~~kyG~i~~~~~g~-~~~v~i~dpe~i~~il~~ 95 (413)
..-+.+++..||.+..-|+.. ...+++++|+.+++++..
T Consensus 19 t~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 446888999999888888854 578999999999999963
No 152
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.19 E-value=89 Score=22.69 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=42.2
Q ss_pred CCCCCCcccccccchhhhh--ccC----CchHHHHHHHhhcCCeEEEEcC-----CccEEEEeChHHHHHHHHh-cCccc
Q 040489 33 LPPGPFNLPVIGNLQWLLK--SFS----EIEPILRNLHSKLGPVVTLFIG-----PRPAIFIADRSLAHKALVQ-NGAIF 100 (413)
Q Consensus 33 ~~PgP~~~pl~G~l~~~~~--~~~----~~~~~~~~~~~kyG~i~~~~~g-----~~~~v~i~dpe~i~~il~~-~~~~f 100 (413)
..|.|...-++.|++.-.. ... ...+.+.+.+.+||+|..+.+. +.-.|-..+++.+...+.. ++..|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456666667788754321 000 1235688888999998776552 3346777788888877743 33334
Q ss_pred cc
Q 040489 101 AD 102 (413)
Q Consensus 101 ~~ 102 (413)
.+
T Consensus 90 ~g 91 (112)
T 2dit_A 90 GG 91 (112)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 153
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.99 E-value=50 Score=24.16 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=36.9
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHhcCccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQNGAIF 100 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~~~~~f 100 (413)
++|||..-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++.++..++..+
T Consensus 31 ~V~nLp~~~-----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~ 93 (116)
T 1x4b_A 31 FIGGLSFET-----TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 93 (116)
T ss_dssp EEECCTTCC-----CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEE
T ss_pred EEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEE
Confidence 578876432 2456889999999987665422 34677789999999885543333
No 154
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=26.71 E-value=1e+02 Score=21.30 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=36.1
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC--------ccEEEEeChHHHHHHHH
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP--------RPAIFIADRSLAHKALV 94 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~--------~~~v~i~dpe~i~~il~ 94 (413)
--++||++.-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++..+.
T Consensus 18 ~l~v~nlp~~~-----~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 18 TVFVGNLEARV-----REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp EEEEECCCTTC-----CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHH
T ss_pred EEEEECCCCCC-----CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 34678886532 2456889999999987766532 34677889999988885
No 155
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.51 E-value=98 Score=22.35 Aligned_cols=55 Identities=18% Similarity=0.049 Sum_probs=39.4
Q ss_pred CCCCcccccccchh-hhhccCCchHHHHHHHhhcCCeEEEEcCC---ccEEEEeChHHHHHHHH
Q 040489 35 PGPFNLPVIGNLQW-LLKSFSEIEPILRNLHSKLGPVVTLFIGP---RPAIFIADRSLAHKALV 94 (413)
Q Consensus 35 PgP~~~pl~G~l~~-~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---~~~v~i~dpe~i~~il~ 94 (413)
+.|..--++|||.. -. -.+.+.+++.+||.|..+++.. .-.|-..+++.+...+.
T Consensus 12 ~~p~~~l~V~nLp~~~~-----te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKN-----LRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCCCEEEEESCCCSSS-----HHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcC-----CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 34544456899875 32 2346888999999998887643 45788889998888774
No 156
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=26.02 E-value=1.8e+02 Score=20.82 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=37.6
Q ss_pred CCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHh
Q 040489 37 PFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 37 P~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~ 95 (413)
+..--++|||..-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 14 ~~~~l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 14 NHFHVFVGDLSPEI-----TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp TCEEEEEESCCTTC-----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 33344678886532 2456889999999987766521 246778899999988853
No 157
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.39 E-value=1.6e+02 Score=20.48 Aligned_cols=54 Identities=22% Similarity=0.178 Sum_probs=37.2
Q ss_pred CCCcccccccchhhhhccCCchHHHHHHHhhcCCeE-EEEcC---------CccEEEEeChHHHHHHHH
Q 040489 36 GPFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVV-TLFIG---------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 36 gP~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~-~~~~g---------~~~~v~i~dpe~i~~il~ 94 (413)
.|..--++||+..-. -.+.+.+++.+||+|. .+.+. +--.|-..+++.++..+.
T Consensus 7 ~~~~~l~V~nLp~~~-----t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2div_A 7 GMAASLWMGDLEPYM-----DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 70 (99)
T ss_dssp SSSSEEEECSCCTTC-----CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHH
T ss_pred CCccEEEEeCCCCCC-----CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHH
Confidence 343344688887542 2456889999999987 65542 124677789999998885
No 158
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=25.25 E-value=74 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.504 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhChHHHHHHHH
Q 040489 318 STALQWIMANLVKHPHVQETVYT 340 (413)
Q Consensus 318 a~tl~w~~~~La~~P~vq~Kl~e 340 (413)
++...-.+-..+|||+.+++++.
T Consensus 27 G~vfg~~i~~~aRnP~~~~~l~~ 49 (76)
T 4f4s_A 27 AIVFAALINGVSRNPSIKDTVFP 49 (76)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHhcChhHHHhHHH
Confidence 56667778889999999999885
No 159
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.21 E-value=59 Score=21.45 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=31.8
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHh
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~ 95 (413)
++||++.-. -.+.+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 4 ~v~nlp~~~-----t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 4 FIGGLSWQT-----TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61 (77)
T ss_dssp EEESCCSSC-----CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT
T ss_pred EEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh
Confidence 356665432 2456888999999876555421 235666788888888754
No 160
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.21 E-value=93 Score=21.95 Aligned_cols=48 Identities=25% Similarity=0.350 Sum_probs=33.7
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHH
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~ 94 (413)
++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.
T Consensus 12 ~V~nlp~~~-----~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 12 FVGNIPYEA-----TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp EEESCCTTS-----CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHH
T ss_pred EEeCCCCcC-----CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 577776432 245688899999988665542 234677789999998885
No 161
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.13 E-value=1.1e+02 Score=22.23 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=36.7
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHh
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~ 95 (413)
-++|||..-. -.+.+.+++.+||+|..+.+.. --.|-..+++.++.++..
T Consensus 20 l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 20 IFVGGLPYHT-----TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp EEEECCCSSC-----CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 4678886532 2456889999999998776643 246778899999998854
No 162
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=24.93 E-value=86 Score=25.66 Aligned_cols=49 Identities=10% Similarity=0.016 Sum_probs=35.6
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC--------CccEEEEeChHHHHHHHHh
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG--------PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g--------~~~~v~i~dpe~i~~il~~ 95 (413)
++||++.- .-.+.+.+++.+||+|..+++. |...|-..+++.++..+..
T Consensus 113 ~V~nLp~~-----~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 113 YIKGFPTD-----ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp EEECCCTT-----CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred EecCCCCc-----CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh
Confidence 56777642 2356789999999998766542 2357788899999998854
No 163
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.92 E-value=1.7e+02 Score=20.77 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=36.0
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCC-eEEEEcC----------CccEEEEeChHHHHHHHHh
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGP-VVTLFIG----------PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~-i~~~~~g----------~~~~v~i~dpe~i~~il~~ 95 (413)
-++||++.-. -.+.+.+++.+||+ |..+.+. +--.|-..+++.+...+..
T Consensus 11 l~V~nLp~~~-----t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 11 LFIGGIPKMK-----KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEECCCTTS-----CHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEEeCCCCcC-----CHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 3678887432 24568899999998 8777654 2346778899999988853
No 164
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.84 E-value=65 Score=23.34 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=34.5
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-------CccEEEEeChHHHHHHHH
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-------~~~~v~i~dpe~i~~il~ 94 (413)
-++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.
T Consensus 32 l~V~nLp~~~-----te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 32 LHVSNIPFRF-----RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp EEEESCCTTC-----CHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHH
T ss_pred EEEECCCCcC-----CHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHH
Confidence 3578876432 245688999999998666653 234677788888888875
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=24.72 E-value=1.6e+02 Score=23.84 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=35.3
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHH
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~ 94 (413)
++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.
T Consensus 32 ~V~nLp~~~-----t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 32 YVGSIYYEL-----GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp EEECCCTTC-----CHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHH
T ss_pred EEECCCCCC-----CHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHH
Confidence 567776432 245788999999999877662 235788889999998885
No 166
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.65 E-value=1e+02 Score=22.34 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=39.0
Q ss_pred ccccccchhhhhccCCchHHHH---HHHhhcCCeEEEEcC------------CccEEEEeChHHHHHHHHh-cCcccccC
Q 040489 40 LPVIGNLQWLLKSFSEIEPILR---NLHSKLGPVVTLFIG------------PRPAIFIADRSLAHKALVQ-NGAIFADR 103 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~---~~~~kyG~i~~~~~g------------~~~~v~i~dpe~i~~il~~-~~~~f~~r 103 (413)
--++|||+.-.. .+.+. +++.+||+|..+.+. +.-.|-..+++.++..+.. ++..+.++
T Consensus 17 ~l~V~nLp~~~~-----~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 17 LVFVVGLSQRLA-----DPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CEEEEEECTTTC-----CHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEEECCCCCCC-----HHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 346888875432 34566 888999998776653 1346777899999888864 55444443
No 167
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=24.24 E-value=1.6e+02 Score=21.39 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=39.3
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC--------CccEEEEeChHHHHHHHHh-cCcccccC
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG--------PRPAIFIADRSLAHKALVQ-NGAIFADR 103 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g--------~~~~v~i~dpe~i~~il~~-~~~~f~~r 103 (413)
-++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 10 l~V~nLp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 10 LFIGGLNRET-----NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp EEEECCTTTC-----CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3578887532 245688999999998766553 2346778899999988853 44444443
No 168
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=23.83 E-value=1.3e+02 Score=22.67 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=37.5
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHh-cCccccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 46 ~V~nLp~~~-----~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 46 MVNYIPTTV-----DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp EEESCSTTC-----CHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred EEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 567776432 245688999999998776552 1246778899999988863 3433433
No 169
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=23.70 E-value=1.8e+02 Score=19.99 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=34.8
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHH
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~ 94 (413)
++||+..-. -.+.+.++..+||+|..+.+. +.-.|-..+++.+..++.
T Consensus 6 ~V~nLp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 62 (96)
T 2x1f_A 6 YLGSIPYDQ-----TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 62 (96)
T ss_dssp EEESCCTTC-----CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHH
T ss_pred EEECCCCCC-----CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 567776432 245688899999999887763 234677889999888874
No 170
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=23.69 E-value=1.2e+02 Score=23.81 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=34.1
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcC--CeEEEEcC-----C----ccEEEEeChHHHHHHHHh
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLG--PVVTLFIG-----P----RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG--~i~~~~~g-----~----~~~v~i~dpe~i~~il~~ 95 (413)
++|||..- --.+.+.+++.+|| .|..+.+. + --.|-..+++.++..+..
T Consensus 59 fVgnLp~~-----~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 59 YVGSFSWW-----TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp EEECCCTT-----CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCC-----CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45666532 23557899999999 78766652 1 247788899999988865
No 171
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.53 E-value=2e+02 Score=20.49 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=31.1
Q ss_pred chHHHHHHHhhcCCeEEEEcCC----ccEEEEeChHHHHHHHHh
Q 040489 56 IEPILRNLHSKLGPVVTLFIGP----RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 56 ~~~~~~~~~~kyG~i~~~~~g~----~~~v~i~dpe~i~~il~~ 95 (413)
-.+.+.+++.+||+|..+.+.+ .-.|-..+++.+...+..
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 3567899999999998877632 347778899998888854
No 172
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.43 E-value=1.7e+02 Score=19.49 Aligned_cols=50 Identities=26% Similarity=0.207 Sum_probs=36.7
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---CccEEEEeChHHHHHHHH
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---~~~~v~i~dpe~i~~il~ 94 (413)
--++||++.-. -.+.+.++..+||+|..+.+. +.-.|-..+++.++..+.
T Consensus 14 ~l~V~~l~~~~-----t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 14 TLYVGGLGDTI-----TETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp CEEEECCTTTS-----CHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHH
T ss_pred EEEEcCCCCCC-----CHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 34678887532 245688899999998877653 345777889999999885
No 173
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.35 E-value=1.8e+02 Score=19.74 Aligned_cols=50 Identities=28% Similarity=0.279 Sum_probs=36.5
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-CccEEEEeChHHHHHHHH
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-~~~~v~i~dpe~i~~il~ 94 (413)
--++||+..-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.
T Consensus 10 ~l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 10 KLFIGNLPREA-----TEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp EEEEESCCSSC-----CHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHH
Confidence 34678887532 245688999999998776653 345778889999888874
No 174
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.23 E-value=1.7e+02 Score=20.36 Aligned_cols=57 Identities=28% Similarity=0.296 Sum_probs=38.5
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---CccEEEEeChHHHHHHHHh-cCccccc
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---PRPAIFIADRSLAHKALVQ-NGAIFAD 102 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---~~~~v~i~dpe~i~~il~~-~~~~f~~ 102 (413)
-++||++.-. -.+.+.+++.+||+|..+.+. +...|-..+++.++..+.. ++..+.+
T Consensus 18 l~V~nlp~~~-----t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 18 LFVGNLPPDI-----TEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp EEEESCCTTC-----CHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred EEEeCCCCCC-----CHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3678887542 245688999999998777664 3346777888888887743 4434443
No 175
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.90 E-value=1.2e+02 Score=22.59 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=36.8
Q ss_pred cccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---CccEEEEeChHHHHHHHH
Q 040489 39 NLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 39 ~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---~~~~v~i~dpe~i~~il~ 94 (413)
..-++|||..-. -.+.+.+++.+||.|..+.+. +.-.|-..+.+.+...+.
T Consensus 32 ~~LfVgNLp~~v-----te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 32 RVIHIRKLPIDV-----TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SEEEEESCCTTC-----CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 334689987532 245689999999998776654 345777788888887774
No 176
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=22.86 E-value=30 Score=24.12 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=28.2
Q ss_pred cCCCCHHHHHHHHHHHhhcccccHHHHHHHH-HHHHhhChHHH
Q 040489 294 KRKLSEEEIVSLCSEFLNAGTDTTSTALQWI-MANLVKHPHVQ 335 (413)
Q Consensus 294 ~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~-~~~La~~P~vq 335 (413)
+.++|.+||.+++. ..|.....-.|. .-.|-+||.|+
T Consensus 29 ~~PltL~EILde~~-----~~d~~~~~k~wL~~eaL~~npkI~ 66 (81)
T 1d8j_A 29 THPLTLDEILDETQ-----HLDIGLKQKQWLMTEALVNNPKIE 66 (81)
T ss_dssp CSCBCHHHHHHHHT-----CSSCCHHHHHHHHTTHHHHCTTEE
T ss_pred CCCccHHHHHHHHh-----ccCCCHHHHHHHHHHHhhcCCceE
Confidence 35689999888776 467777888998 55688898765
No 177
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.46 E-value=1.2e+02 Score=21.92 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=35.5
Q ss_pred CCcccccccchhhhhccCCchHHHHHHHhhcCCe----EEEEc--C---CccEEEEeChHHHHHHHHh
Q 040489 37 PFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPV----VTLFI--G---PRPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 37 P~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i----~~~~~--g---~~~~v~i~dpe~i~~il~~ 95 (413)
|..--++||+..-. -.+.+.+++.+||+| ..+.. + +.-.|-..+++.++..+..
T Consensus 24 ~~~~l~V~nLp~~~-----t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 24 PNKVLYLKNLSPRV-----TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp CCSEEEEECCCTTC-----CHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC-----CHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH
Confidence 33344678887432 245688888999976 43332 2 2346778899999988854
No 178
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=22.37 E-value=1.3e+02 Score=21.16 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=35.5
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC--------CccEEEEeChHHHHHHHH
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG--------PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g--------~~~~v~i~dpe~i~~il~ 94 (413)
-++||+..-. -.+.+.+++.+||+|..+.+. +--.|-..+++.++..+.
T Consensus 18 l~v~nLp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 18 LFVGMLNKQQ-----SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp EEEESCCTTC-----CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHH
Confidence 4678887532 245688999999998776653 234677889999888874
No 179
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.26 E-value=1.8e+02 Score=20.79 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=36.9
Q ss_pred cccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---CccEEEEeChHHHHHHHH
Q 040489 39 NLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 39 ~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---~~~~v~i~dpe~i~~il~ 94 (413)
..-++||+..-. -.+.+.+++.+||.|..+.+. +.-.|-..+.+.+...+.
T Consensus 16 ~~l~V~nLp~~~-----te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 16 RVLHIRKLPGEV-----TETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SEEEEESCCTTC-----CHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCC-----CHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 345689987532 245688999999999877653 345788888988888774
No 180
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.23 E-value=1.3e+02 Score=21.69 Aligned_cols=57 Identities=21% Similarity=0.164 Sum_probs=38.2
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC--------ccEEEEeChHHHHHHHHh-cCcccc
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP--------RPAIFIADRSLAHKALVQ-NGAIFA 101 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~--------~~~v~i~dpe~i~~il~~-~~~~f~ 101 (413)
--++|||..-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++..+.. ++..+.
T Consensus 17 ~l~V~nlp~~~-----~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 17 TVFVANLDYKV-----GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CEEEESCCTTC-----CHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34678887532 2456889999999987655421 346778899988888753 443343
No 181
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.23 E-value=1.9e+02 Score=20.12 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=39.2
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhc--CCeEEEEcC-CccEEEEeChHHHHHHHH-hcCcccc
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKL--GPVVTLFIG-PRPAIFIADRSLAHKALV-QNGAIFA 101 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~ky--G~i~~~~~g-~~~~v~i~dpe~i~~il~-~~~~~f~ 101 (413)
--++||+..-. -.+.+.+++.+| |.|..+.+. +.-.|-..+++.+...+. -++..+.
T Consensus 17 ~l~V~nLp~~~-----t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 17 ILYVRNLMLST-----SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp EEEEESCCTTC-----CHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 34678887542 245688999999 888777653 355778889999888885 2443343
No 182
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.03 E-value=1.6e+02 Score=21.15 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=37.0
Q ss_pred cccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---CccEEEEeChHHHHHHHH
Q 040489 39 NLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 39 ~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---~~~~v~i~dpe~i~~il~ 94 (413)
..-++|||..-. -.+.+.+++.+||.|..+.+. +.-.|-..+.+.+...+.
T Consensus 16 ~~l~V~nLp~~~-----te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 16 PVVHVRGLCESV-----VEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp SEEEEESCCSSC-----CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCC-----CHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 344678887432 355789999999999887754 345777888888888774
No 183
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.92 E-value=1.9e+02 Score=19.57 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=39.6
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC-CccEEEEeChHHHHHHHHh-cCcccc
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG-PRPAIFIADRSLAHKALVQ-NGAIFA 101 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g-~~~~v~i~dpe~i~~il~~-~~~~f~ 101 (413)
--++||++.-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.. ++..+.
T Consensus 11 ~l~V~nlp~~~-----t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 11 KIFVGNVSAAC-----TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp CEEEESCCTTC-----CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34688887532 245688899999998877764 3457788899988888753 343343
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=21.77 E-value=2.1e+02 Score=23.66 Aligned_cols=58 Identities=22% Similarity=0.187 Sum_probs=40.6
Q ss_pred cccccchh-hhhccCCchHHHHHHHhhcCCeEEEEcC----CccEEEEeChHHHHHHHH-hcCcccccC
Q 040489 41 PVIGNLQW-LLKSFSEIEPILRNLHSKLGPVVTLFIG----PRPAIFIADRSLAHKALV-QNGAIFADR 103 (413)
Q Consensus 41 pl~G~l~~-~~~~~~~~~~~~~~~~~kyG~i~~~~~g----~~~~v~i~dpe~i~~il~-~~~~~f~~r 103 (413)
-++||+.. -. -.+.+.+++++||+|..+.+. +.-.|-..+++.++..+. -++..+.++
T Consensus 37 l~V~nLp~~~~-----te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 100 (229)
T 2adc_A 37 LLVSNLNPERV-----TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK 100 (229)
T ss_dssp EEEESCCTTTC-----CHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred EEEeCCCcccC-----CHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 35788864 22 245688899999999877764 346788899999998884 344445443
No 185
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=21.47 E-value=83 Score=21.65 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=31.2
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcC--CeEEEEcC-----C----ccEEEEeChHHHHHHHH
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLG--PVVTLFIG-----P----RPAIFIADRSLAHKALV 94 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG--~i~~~~~g-----~----~~~v~i~dpe~i~~il~ 94 (413)
++||+..-. -.+.+.++..+|| +|..+.+. + --.|-..+++.++..+.
T Consensus 5 ~V~nL~~~~-----t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~ 63 (90)
T 3p5t_L 5 YIGNLTWWT-----TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 63 (90)
T ss_dssp EEESCCTTC-----CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHH
T ss_pred EEeCCCCCC-----CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHH
Confidence 467776432 2456888999999 77554431 1 23677788888888874
No 186
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.41 E-value=1.4e+02 Score=20.54 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=37.0
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC----ccEEEEeChHHHHHHHHhcCccccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP----RPAIFIADRSLAHKALVQNGAIFAD 102 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~----~~~v~i~dpe~i~~il~~~~~~f~~ 102 (413)
++||+..-. -.+.+.+++.+||+|..+.... --.|-..+++.++.++.-++..+.+
T Consensus 12 ~V~nl~~~~-----t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g 71 (94)
T 2e5g_A 12 FVSGFPRGV-----DSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGG 71 (94)
T ss_dssp EEECCCTTC-----CHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETT
T ss_pred EEECCCCCC-----CHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECC
Confidence 578886432 3557889999999987653221 2456778999999888634433433
No 187
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=21.12 E-value=2.4e+02 Score=20.28 Aligned_cols=53 Identities=17% Similarity=0.094 Sum_probs=38.3
Q ss_pred CCcccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---CccEEEEeChHHHHHHHH
Q 040489 37 PFNLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 37 P~~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---~~~~v~i~dpe~i~~il~ 94 (413)
|...-++||++.-. -.+.+.++..+||+|..+.+. +.-.|-..+.+.++..+.
T Consensus 20 ps~~l~V~NLp~~~-----te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 20 ASPVVHIRGLIDGV-----VEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCSEEEEESCCTTC-----CHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCcEEEEeCCCCCC-----CHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 44445789987532 245689999999998776653 456788888988888774
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=21.07 E-value=1.1e+02 Score=24.46 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=37.5
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHhcCcccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQNGAIFA 101 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~~~~~f~ 101 (413)
++||++.-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.+..++..++..+.
T Consensus 108 ~V~nLp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~ 171 (196)
T 1l3k_A 108 FVGGIKEDT-----EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN 171 (196)
T ss_dssp EEECCTTTC-----CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEET
T ss_pred EEeCCCCCC-----CHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEEC
Confidence 567776432 2456888999999987665431 247888899999998865443333
No 189
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=20.96 E-value=1.2e+02 Score=24.14 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=37.8
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHhcC
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQNG 97 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~~~ 97 (413)
--++|||+.-. -.+.+.+++.+||+|..+.+. +.-.|-..+++.+...+..++
T Consensus 15 ~l~V~nLp~~~-----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 76 (196)
T 1l3k_A 15 KLFIGGLSFET-----TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP 76 (196)
T ss_dssp EEEEESCCTTC-----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC
Confidence 34678887532 245788999999998765542 134788899999999986543
No 190
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=20.74 E-value=1.7e+02 Score=27.53 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=39.4
Q ss_pred cccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC---------CccEEEEeChHHHHHHHHh-cCcccc
Q 040489 39 NLPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG---------PRPAIFIADRSLAHKALVQ-NGAIFA 101 (413)
Q Consensus 39 ~~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g---------~~~~v~i~dpe~i~~il~~-~~~~f~ 101 (413)
.--+||||..-. -...+.+++.+||+|..+.+. +.-+|...+++.+..++.. ++..+.
T Consensus 103 ~~lfV~nL~~~~-----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 103 KTLFVARVNYDT-----TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred CEEEEeCCCCCC-----CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 344788886542 245688899999998776652 2357888899988888744 443343
No 191
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=20.70 E-value=1.7e+02 Score=21.10 Aligned_cols=50 Identities=16% Similarity=0.009 Sum_probs=35.0
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHh
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQ 95 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~ 95 (413)
-++|||..-. -.+.+.+++.+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 28 l~V~nLp~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 28 LFIYHLPQEF-----GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp EEEESCCSSC-----CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 3678887532 2457889999999986655421 246777899988888843
No 192
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=20.63 E-value=2.8e+02 Score=21.01 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=36.4
Q ss_pred ccccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC----CccEEEEeChHHHHHHHH
Q 040489 40 LPVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG----PRPAIFIADRSLAHKALV 94 (413)
Q Consensus 40 ~pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g----~~~~v~i~dpe~i~~il~ 94 (413)
--++||++.-. -.+.+.+++.+||+|..+.+. +--.|-..+++.+...+.
T Consensus 75 ~l~V~nl~~~~-----t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~ 128 (150)
T 2i2y_A 75 KVYVGNLGNNG-----NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVR 128 (150)
T ss_dssp EEEEESCCSCC-----SCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHH
Confidence 34678886532 245688999999999877763 335777889998888875
No 193
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=20.56 E-value=1.2e+02 Score=23.26 Aligned_cols=54 Identities=26% Similarity=0.276 Sum_probs=36.5
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcC--------CccEEEEeChHHHHHHHH-hcCccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIG--------PRPAIFIADRSLAHKALV-QNGAIF 100 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g--------~~~~v~i~dpe~i~~il~-~~~~~f 100 (413)
++||++.-. -.+.+.++.++||+|..+.+. +.-.|-..+++.+...+. -++..+
T Consensus 4 ~V~nlp~~~-----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 66 (166)
T 3md3_A 4 YVGNLDKAI-----TEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI 66 (166)
T ss_dssp EEEEEETTC-----CHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EECCCCCcC-----CHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence 467776432 245688999999999777652 235788889999988883 344333
No 194
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=20.51 E-value=1.1e+02 Score=23.64 Aligned_cols=51 Identities=6% Similarity=0.029 Sum_probs=35.5
Q ss_pred cccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC---------ccEEEEeChHHHHHHHHhc
Q 040489 41 PVIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP---------RPAIFIADRSLAHKALVQN 96 (413)
Q Consensus 41 pl~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~---------~~~v~i~dpe~i~~il~~~ 96 (413)
-++||++.-. -.+.+.++..+||+|..+.+.. .-.|-..+++.+..++..+
T Consensus 90 l~V~nlp~~~-----t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 149 (167)
T 2cjk_A 90 IFVGGIGPDV-----RPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNK 149 (167)
T ss_dssp EEEEEECTTC-----CHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCS
T ss_pred EEECCCCCCC-----CHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCC
Confidence 3567776432 2456888999999987766532 2467788999999988533
No 195
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=20.37 E-value=1.7e+02 Score=20.96 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=37.4
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEc-CCccEEEEeChHHHHHHHHh-cCccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFI-GPRPAIFIADRSLAHKALVQ-NGAIF 100 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~-g~~~~v~i~dpe~i~~il~~-~~~~f 100 (413)
++||+..-. -.+.+.+++.+||+|..+.+ -+.-.|-..+++.++..+.. ++..+
T Consensus 35 ~V~nLp~~~-----t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 35 FVRPFPLDV-----QESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp EECSSCTTC-----CHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EEECCCCCC-----CHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 578876432 24568899999999876665 34557778899988888753 44333
No 196
>3ks4_A Polymerase cofactor VP35; RNA-binding protein, protein-RNA complex, interferon, HOST cytoplasm, interferon antiviral system evasion; 2.40A {Reston ebolavirus} PDB: 3ks8_A
Probab=20.36 E-value=1.1e+02 Score=23.86 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=59.1
Q ss_pred cCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCCC------CCCCCChhHHH-----
Q 040489 294 KRKLSEEEIVSLCSEFLNAGTDTTSTALQWIMANLVKHPHVQETVYTEIRGVVGENEE------GPKYRVPLFLF----- 362 (413)
Q Consensus 294 ~~~lt~~ei~~~~~~~l~AG~dTTa~tl~w~~~~La~~P~vq~Kl~eEi~~v~g~~~~------~~~~~lpyl~a----- 362 (413)
...++..++...+.+- +-|.-|+=.-|.-++.-+.+.....+-+.+|..+.+.+++. ....+.||.+-
T Consensus 60 kp~isakdl~~il~~H-LpG~~TaFHqLvqvI~kvgkD~~~Ldi~h~eFqa~LaeGdS~q~AlIqITkR~~~F~~~~pP~ 138 (184)
T 3ks4_A 60 KPYISAKDLKEIMYDH-LPGFGTAFHQLVQVICKIGKDNNLLDTIHAEFQASLADGDSPQCALIQITKRVPIFQDVPPPI 138 (184)
T ss_dssp CCSSCHHHHHHHHHHT-CSSSSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTHHHHSCCCE
T ss_pred CCCcCHHHHHHHHHHh-CCCCCchHHHHHHHHHHHccchhHHHHHHHHHHHHHhcCCCcchhHHHHHhhchhhcCCCCCe
Confidence 3468888888766555 56999999999999999999999999999988888765442 11123444432
Q ss_pred -----------hhhccccccCCCCC
Q 040489 363 -----------ICIPDLRIHMHLSL 376 (413)
Q Consensus 363 -----------vikEtlRl~pp~~~ 376 (413)
.+.-+||=-||.|-
T Consensus 139 i~i~sk~~IPraCqksLR~vPp~PK 163 (184)
T 3ks4_A 139 IHIRSRGDIPRACQKSLRPAPPSPK 163 (184)
T ss_dssp EECSSGGGSCHHHHTTEEECCSSCC
T ss_pred EEeeccccCCHHHhhccCCCCCCCc
Confidence 24557887777765
No 197
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=20.31 E-value=1.8e+02 Score=20.29 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=36.5
Q ss_pred ccccchhhhhccCCchHHHHHHHhhcCCeEEEEcCC----------ccEEEEeChHHHHHHHHhcCccccc
Q 040489 42 VIGNLQWLLKSFSEIEPILRNLHSKLGPVVTLFIGP----------RPAIFIADRSLAHKALVQNGAIFAD 102 (413)
Q Consensus 42 l~G~l~~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~----------~~~v~i~dpe~i~~il~~~~~~f~~ 102 (413)
++||+..-. -.+.+.+++.+|| |..+.+.. --.|-..+.+.++..+.-++..+.+
T Consensus 23 ~V~nLp~~~-----t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 23 FLGNLPYDV-----TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp EESCCSSCC-----SSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred EEeCCCCCC-----CHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 578876432 1335788889999 87777632 3467888999999888434444433
Done!