Your job contains 1 sequence.
>040490
EIGGFIGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIF
YRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ
ARILPHFI
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040490
(128 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 282 9.7e-25 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 263 1.0e-22 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 178 1.8e-17 2
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 193 2.6e-15 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 137 6.7e-14 2
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 121 1.9e-11 2
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 132 4.1e-11 2
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 126 2.1e-10 2
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 118 3.2e-10 2
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 114 1.7e-09 2
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 117 1.8e-09 2
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein... 111 1.9e-09 2
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 115 2.0e-09 2
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 114 2.5e-09 2
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 120 2.8e-09 2
UNIPROTKB|D4A2D2 - symbol:D4A2D2 "Uncharacterized protein... 116 3.0e-09 2
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 136 3.3e-09 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 114 3.6e-09 2
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 133 5.9e-09 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 133 5.9e-09 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 114 6.1e-09 2
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 114 6.3e-09 2
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 114 6.4e-09 2
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 114 7.5e-09 2
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 114 7.5e-09 2
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 114 7.5e-09 2
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 114 7.5e-09 2
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 114 7.5e-09 2
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 114 7.5e-09 2
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 114 7.5e-09 2
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 114 7.5e-09 2
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 114 8.4e-09 2
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 114 1.3e-08 2
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 114 1.3e-08 2
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 114 1.3e-08 2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 116 1.4e-08 2
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 114 1.4e-08 2
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 129 1.6e-08 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 129 1.6e-08 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 129 1.6e-08 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 110 1.6e-08 2
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 129 1.8e-08 1
UNIPROTKB|D4AD23 - symbol:D4AD23 "Uncharacterized protein... 112 1.8e-08 2
UNIPROTKB|F1LW71 - symbol:F1LW71 "Uncharacterized protein... 108 1.9e-08 2
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 128 2.0e-08 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 128 2.0e-08 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 128 2.0e-08 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 128 2.0e-08 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 101 2.2e-08 2
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 110 2.6e-08 2
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 110 2.6e-08 2
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 104 2.7e-08 2
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 100 2.8e-08 2
ZFIN|ZDB-GENE-030912-14 - symbol:hnrnpa1 "heterogeneous n... 105 3.4e-08 2
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 106 3.5e-08 2
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 110 3.5e-08 2
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 107 3.7e-08 2
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 110 3.8e-08 2
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 110 3.9e-08 2
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 4.2e-08 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 125 4.2e-08 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 125 4.2e-08 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 90 4.5e-08 2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 110 4.6e-08 2
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 110 4.6e-08 2
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 110 4.6e-08 2
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 110 4.6e-08 2
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 110 4.7e-08 2
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 106 4.8e-08 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 107 4.9e-08 2
UNIPROTKB|D4A6Z0 - symbol:D4A6Z0 "Uncharacterized protein... 88 5.1e-08 2
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 124 5.3e-08 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 5.8e-08 1
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 102 5.9e-08 2
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 104 6.0e-08 2
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 123 6.8e-08 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 123 6.8e-08 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 123 6.8e-08 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 107 7.0e-08 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 104 7.1e-08 2
UNIPROTKB|G5E5V7 - symbol:G5E5V7 "Uncharacterized protein... 116 7.1e-08 2
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 105 7.6e-08 2
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 105 7.6e-08 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 104 7.9e-08 2
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 90 7.9e-08 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 104 8.0e-08 2
UNIPROTKB|E2RJS4 - symbol:E2RJS4 "Uncharacterized protein... 105 8.0e-08 2
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 103 8.6e-08 2
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 122 8.7e-08 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 122 8.7e-08 1
WARNING: Descriptions of 561 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 56/75 (74%), Positives = 63/75 (84%)
Query: 18 VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
V + EPPE+AKLFVGNL YDVDS+ LA LF QAG VEISEVI+ R+TD+S GFGFVTMST
Sbjct: 104 VGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMST 163
Query: 78 VEEAEKVVEMFNRYE 92
VEEAEK VE FN +E
Sbjct: 164 VEEAEKAVEKFNSFE 178
Score = 129 (50.5 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+++VGNL +DVDS +L LF++ G V + V+ RET RS GFGFV MS E +
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 80 EAEKVVE--MFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E KVV+ + + ETG S GFGF MS+E+++N AIAALDGQ
Sbjct: 229 EHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQ 271
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/74 (68%), Positives = 62/74 (83%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
++ EP E+AKLFVGNL YDV+S+ LA LF QAG VEI+EVI+ RETD+S GFGFVTMS+V
Sbjct: 142 EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 79 EEAEKVVEMFNRYE 92
+EAE VE FNRY+
Sbjct: 202 DEAETAVEKFNRYD 215
Score = 145 (56.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+++VGNL +DVD+ +L LF++ G V + V++ RET RS GFGFVTMS V+E + +
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Score = 112 (44.5 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 27/44 (61%), Positives = 33/44 (75%)
Query: 80 EAEKVVE---MFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E KVVE +++R ETG S GFGF TMSD +LN+AI+ALDGQ
Sbjct: 266 EHGKVVEARVVYDR-ETGRSRGFGFVTMSDVDELNEAISALDGQ 308
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 178 (67.7 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 31/70 (44%), Positives = 51/70 (72%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ +L+VGNL Y + S +L+ +F +AG V ++++ + TDRS GFGFVTM ++EEA++
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 85 VEMFNRYETG 94
++MFN + G
Sbjct: 174 MQMFNSSQIG 183
Score = 106 (42.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
Y + P K++ GNL +++ S+ L F +Q GV+ ++VI+ R T RS GFGF++ +
Sbjct: 214 YVDSPH--KVYAGNLGWNLTSQGLKDAFGDQPGVLG-AKVIYERNTGRSRGFGFISFESA 270
Query: 79 EEAEKVVEMFNRYE 92
E + + N E
Sbjct: 271 ENVQSALATMNGVE 284
Score = 57 (25.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 91 YE--TGCSHGFGFFTMSDESKLNDAIAALDG 119
YE TG S GFGF + + A+A ++G
Sbjct: 252 YERNTGRSRGFGFISFESAENVQSALATMNG 282
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFVTMS+V E E
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 86 EMFNRYE 92
+ FN YE
Sbjct: 150 QQFNGYE 156
Score = 118 (46.6 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+++VGNL + VD L LF++ G V + VI+ R++ RS GFGFVT + +E + ++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 137 (53.3 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 22 EPPE--DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+PP + KL+ GNL Y+VDS LA + E+ EV++ R+T +S GF FVTMS VE
Sbjct: 78 DPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 137
Query: 80 EAEKVVE 86
+ +++
Sbjct: 138 DCNIIID 144
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V SE LA F + G V + V+F +T RS G+GFV S+ E E
Sbjct: 173 PETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 83 KVVEMFNRYE 92
+E + +E
Sbjct: 233 TALESLDGFE 242
Score = 62 (26.9 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDG 119
+TG S G+GF S ++++ A+ +LDG
Sbjct: 213 DTGRSRGYGFVCYSSKAEMETALESLDG 240
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 121 (47.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 22 EPPEDA--KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+P +A ++++GN+ V +E+L L + G VE +V++ + + RS FGF TM +VE
Sbjct: 69 DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVE 128
Query: 80 EAEKVVEMFN 89
+A VVE N
Sbjct: 129 DANAVVEKLN 138
Score = 117 (46.2 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL V E L +LF++ G V ++V T +STGFGFVT S+ E+ E +
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 88 FN 89
N
Sbjct: 238 LN 239
Score = 56 (24.8 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALD 118
T S GFGF T S E + AI AL+
Sbjct: 214 TSKSTGFGFVTFSSEEDVEAAIVALN 239
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 132 (51.5 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 30/62 (48%), Positives = 38/62 (61%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
E + + LFVGNL ++VD LA F G V + VI RE+ RS GFG+V +T EEA
Sbjct: 234 ESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEA 293
Query: 82 EK 83
EK
Sbjct: 294 EK 295
Score = 122 (48.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
PE LFVGNL +D D + + F++ V+ + +E+ R GFG+VT ++VE+A+
Sbjct: 339 PESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKS 398
Query: 84 VVEMFN 89
E N
Sbjct: 399 AFEQLN 404
Score = 52 (23.4 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 79 EEAE-KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E AE K + + E+G GFG+ T + A L+GQ+
Sbjct: 364 EVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQS 407
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 126 (49.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLF+G L +D + E L +F++ G +ISEV+ RET RS GFGFVT ++A+
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYG--QISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query: 83 KVVEMFN 89
+ N
Sbjct: 61 DAMMAMN 67
Score = 33 (16.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 91 YETGCSHGFGFF 102
Y G S G GFF
Sbjct: 92 YRGGSSGGRGFF 103
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 118 (46.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TV
Sbjct: 2 DSMEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 61
Query: 79 EEAE 82
EE +
Sbjct: 62 EEVD 65
Score = 104 (41.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G E+ E++ R + + GF FVT + +K+V
Sbjct: 101 KIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIV-- 158
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 159 IQKYHTVNGH 168
Score = 42 (19.8 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 127 EVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIV 158
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 114 (45.2 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 28 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 87
Query: 82 E 82
+
Sbjct: 88 D 88
Score = 107 (42.7 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 125 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 182
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 183 IQKYHTVNGH 192
Score = 43 (20.2 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 151 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 182
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 117 (46.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L ++ E L +F++ G V V+ RE+ RS GFGFVT E+A+
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MMAMN 68
Score = 33 (16.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 91 YETGCSHGFGFF 102
Y G S G GFF
Sbjct: 93 YRGGSSGGRGFF 104
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 111 (44.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 26/61 (42%), Positives = 33/61 (54%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L + E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 2 EPEQLLKLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 82 E 82
+
Sbjct: 62 D 62
Score = 92 (37.4 bits), Expect = 0.00033, P = 0.00033
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 99 KIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 153
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 154 IQKYHTVNGH 163
Score = 43 (20.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 122 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 153
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 115 (45.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 2 EPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 82 E 82
+
Sbjct: 62 D 62
Score = 106 (42.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G E+ E++ R + + GF FVT + +K+V
Sbjct: 99 KIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIV-- 156
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 157 IQKYHTVNGH 166
Score = 42 (19.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 125 EVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIV 156
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 114 (45.2 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD-RSTGFGFVTMSTVEEAEKVVE 86
KLFV NL + + ++ LF Q G V E+I R+ D ++ GF FVTM++ EEA+ ++
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEII--RQKDGKNRGFAFVTMASGEEAQAAID 153
Query: 87 MFNRYE 92
F+ ++
Sbjct: 154 KFDTFQ 159
Score = 109 (43.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 36/101 (35%), Positives = 48/101 (47%)
Query: 21 SEPPEDA--KLFVGNLRYDVDSEKLAHLFNQAGVVEIS-EVIFYRETDRSTGFGFVTMST 77
S P D KL+V NL + S L LF A +S V+F RS+G+GFV+ +T
Sbjct: 186 SPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFAT 245
Query: 78 VEEAEKVVEMFNRYET-GCSHGFGFFTMS-DESKLNDAIAA 116
EEAE + N E G F S ES+ D++ A
Sbjct: 246 REEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEA 286
Score = 47 (21.6 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 94 GCSHGFGFFTMSDESKLNDAIAALDGQ 120
G S G+GF + + + +AI L+G+
Sbjct: 233 GRSSGYGFVSFATREEAENAITKLNGK 259
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 120 (47.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
SEP D +LFVGNL Y+V + L LF QAG V +++ +E RS G G V MS+++E
Sbjct: 175 SEP--DRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKE 231
Query: 81 AEKVVEMFN 89
A ++M +
Sbjct: 232 AMHAIQMLH 240
Score = 97 (39.2 bits), Expect = 0.00039, P = 0.00039
Identities = 26/75 (34%), Positives = 31/75 (41%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
Y P ++VGNL + L LF G V I I Y T RS GFG V
Sbjct: 303 YPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSV-IRARIAYEPTGRSKGFGVVQFENEN 361
Query: 80 EAEKVVEMFNRYETG 94
+A +E N Y G
Sbjct: 362 DAASSIEKLNGYRYG 376
Score = 46 (21.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 91 YE-TGCSHGFGFFTMSDESKLNDAIAALDG 119
YE TG S GFG +E+ +I L+G
Sbjct: 343 YEPTGRSKGFGVVQFENENDAASSIEKLNG 372
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 116 (45.9 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
EP + KLF+G L ++ E L F Q G ++E + R+ T RS GFGFVT +TVE
Sbjct: 9 EPEQLRKLFIGGLTFETTDESLRSHFEQWGT--LTECVVMRDPNTKRSRGFGFVTYATVE 66
Query: 80 EAE 82
E +
Sbjct: 67 EVD 69
Score = 100 (40.3 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIV-- 158
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 159 IRKYHTVNDH 168
Score = 41 (19.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 127 EVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIV 158
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 136 (52.9 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLF+G L YD + L F++ G + +VI RETDRS GFGFVT E+A+
Sbjct: 21 DEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDA 80
Query: 85 VEMFN 89
+ N
Sbjct: 81 MAAMN 85
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 114 (45.2 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VG+L YDV +++L F Q G +E +++I RET RS GF F+T T + A++ V
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 88 FN 89
N
Sbjct: 79 AN 80
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VG+L YDV +++L F Q G +E +++I RET RS GF F+T T + A++ V
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 88 FN 89
N
Sbjct: 79 AN 80
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 114 (45.2 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 114 (45.2 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 114 (45.2 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 114 (45.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 114 (45.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 114 (45.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVKGH 173
Score = 43 (20.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 114 (45.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 114 (45.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 114 (45.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 114 (45.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 114 (45.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 114 (45.2 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 114 (45.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 114 (45.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 114 (45.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 43 (20.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 116 (45.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
E E A +FVG L + +D E L F G V + VI+ R TDRS G+G+V A
Sbjct: 163 ETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYA 222
Query: 82 EKVVE 86
EK ++
Sbjct: 223 EKAIQ 227
Score = 109 (43.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D P D LF+GNL ++ D + + LF + G V + + ET++ GFG+V S +
Sbjct: 260 DTPSEPSDT-LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNM 318
Query: 79 EEAEKVVE 86
E+A+K ++
Sbjct: 319 EDAKKALD 326
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
ET GFG+ S+ A+ AL G+
Sbjct: 303 ETEQPKGFGYVQFSNMEDAKKALDALQGE 331
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 114 (45.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 30 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 89
Query: 82 E 82
+
Sbjct: 90 D 90
Score = 107 (42.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 127 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 184
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 185 IQKYHTVNGH 194
Score = 43 (20.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 153 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 184
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 110 (43.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVE+
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 105 (42.0 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
Score = 44 (20.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D + ++ +
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 163
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 112 (44.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 93 (37.8 bits), Expect = 0.00057, P = 0.00057
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G E+ E++ R + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEHH-LRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIV-- 162
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 163 IQKYHTVNGH 172
Score = 41 (19.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ G GF F T D ++ +
Sbjct: 131 EVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIV 162
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 108 (43.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF G L ++ E L F Q G + V+ T RS GFGFVT + VEE
Sbjct: 16 EPEQLRKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEV 75
Query: 82 EK 83
++
Sbjct: 76 DR 77
Score = 98 (39.6 bits), Expect = 0.00012, P = 0.00012
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 109 KIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIV-- 166
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 167 IQKYHTVNGH 176
Score = 42 (19.8 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+VVE+ +G GF F T D ++ +
Sbjct: 135 EVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIV 166
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L + + L+ F++ G V ++++ R +DRS GFGFVT ++ +EA+K +
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 87 MFN 89
FN
Sbjct: 94 EFN 96
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 101 (40.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 25 EDAK-LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
ED K +++G+L+ +D L F+QAG V ++I ++T +S +GFV +T AEK
Sbjct: 81 EDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEK 140
Query: 84 VVEMFN 89
V++ +N
Sbjct: 141 VLQSYN 146
Score = 56 (24.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDG 119
TG S G+GF DES+ + A+ ++G
Sbjct: 215 TGHSKGYGFVRFGDESERSRAMTEMNG 241
Score = 45 (20.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 98 GFGFFTMSDESKLNDAIAALDG 119
G GF SD S +AI L G
Sbjct: 331 GCGFVQFSDRSSAQEAIQKLSG 352
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 110 (43.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S V
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 79 EEAE 82
EE +
Sbjct: 87 EEVD 90
Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 185 VQKYHTINGH 194
Score = 42 (19.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 110 (43.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S V
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 79 EEAE 82
EE +
Sbjct: 65 EEVD 68
Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 162
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 163 VQKYHTINGH 172
Score = 42 (19.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 131 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 162
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 104 (41.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KL +G L ++ + L F + G + V+ +T RS GFGFVT S VEE
Sbjct: 3 EPEQLRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 62
Query: 82 EKVV 85
+ V
Sbjct: 63 DAAV 66
Score = 92 (37.4 bits), Expect = 0.00039, P = 0.00039
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K+FVG ++ D + L F + G +E EV+ ++ + GF FVT + +K+V+
Sbjct: 100 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVD 158
Score = 42 (19.8 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 126 ETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIV 157
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 100 (40.3 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 22 EFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 80
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 81 VDEMNGKE 88
Score = 100 (40.3 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 125 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 182
Query: 85 VEMFN 89
V N
Sbjct: 183 VTEMN 187
Score = 49 (22.3 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 161 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 189
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 105 (42.0 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F+Q G +E+ E++ +T GF FVT + +++V
Sbjct: 125 KIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIV-- 182
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 183 IQKYHTVNGH 192
Score = 104 (41.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
EP + KLF+G L ++ + L F Q G + V+ T RS GFGFVT S+V+E
Sbjct: 28 EPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDE 86
Score = 51 (23.0 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLN 111
+VVE+ ++TG GF F T D ++
Sbjct: 151 EVVEIMVDHKTGNKRGFAFVTFDDHDSVD 179
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 106 (42.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G V+ E+I R++ + GFGF T + +K+V
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIV-- 170
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 171 LQKYHTINGH 180
Score = 95 (38.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L ++ E L + + Q G ++++ + R+ + RS GFGFVT S++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 80 EAE 82
E +
Sbjct: 74 EVD 76
Score = 58 (25.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 79 EEAEKV--VEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
EE KV +E+ ++G GFGFFT D ++ +
Sbjct: 133 EEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIV 170
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 110 (43.8 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK- 83
E ++V NL DVD ++L LF+Q G + +S + ++ S GFGFV EEA+K
Sbjct: 189 EFTNIYVKNLHVDVDEQRLQDLFSQFGKM-LSVKVMRDDSGHSRGFGFVNFEKHEEAQKA 247
Query: 84 VVEMFNRYETG 94
VV M R +G
Sbjct: 248 VVNMNGREVSG 258
Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00016
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D EKL F+ GV+ ++V+ E S GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 49 (22.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 107 (42.7 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S VEE
Sbjct: 4 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 63
Query: 82 E 82
+
Sbjct: 64 D 64
Score = 100 (40.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 101 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 158
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 159 VQKYHTINGH 168
Score = 42 (19.8 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 127 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 158
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 110 (43.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S V
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 64
Query: 79 EEAE 82
EE +
Sbjct: 65 EEVD 68
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 162
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 163 VQKYHTINGH 172
Score = 42 (19.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 131 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 162
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 110 (43.8 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+V
Sbjct: 109 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV-- 166
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 167 LQKYHTINGH 176
Score = 102 (41.0 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMS 76
D+ E + KLF+G L ++ E L + + Q G ++++ + R+ + RS GFGFVT S
Sbjct: 9 DWREKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFS 66
Query: 77 TVEEAE 82
++ E +
Sbjct: 67 SMAEVD 72
Score = 50 (22.7 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 79 EEAEKV--VEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
EE K+ +E+ ++G GFGF T D ++ +
Sbjct: 129 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 166
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 129 (50.5 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D D + L +F++ G ++ V+ RET RS GFGFVT E+A+
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MAGMN 68
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLF+G L +D + L F++ GV+ V RET+RS GFGFVT ++A+
Sbjct: 3 DEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDA 62
Query: 85 VEMFN 89
+E N
Sbjct: 63 LEGMN 67
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 90 (36.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
ED+K L V L ++ E+L LF G +E +++ + T +S G+GFV ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 52 (23.4 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 110 (43.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S V
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 79 EEAE 82
EE +
Sbjct: 87 EEVD 90
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 185 VQKYHTINGH 194
Score = 42 (19.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 110 (43.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S V
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 79 EEAE 82
EE +
Sbjct: 87 EEVD 90
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 185 VQKYHTINGH 194
Score = 42 (19.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 110 (43.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S V
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 79 EEAE 82
EE +
Sbjct: 87 EEVD 90
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 185 VQKYHTINGH 194
Score = 42 (19.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 110 (43.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S V
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 79 EEAE 82
EE +
Sbjct: 87 EEVD 90
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 185 VQKYHTINGH 194
Score = 42 (19.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 110 (43.8 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S V
Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86
Query: 79 EEAE 82
EE +
Sbjct: 87 EEVD 90
Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 185 VQKYHTINGH 194
Score = 42 (19.8 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 106 (42.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL D D L +F G V +VI T++ GFGFVTM+ EEA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 89 NRYETG 94
N Y G
Sbjct: 306 NGYRLG 311
Score = 88 (36.0 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L ++ E+L LF+ G +E +++I + S G+GFV T ++AE+ +
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 89 N 89
N
Sbjct: 82 N 82
Score = 63 (27.2 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + + AIA+L+G
Sbjct: 274 KVIRDFNTNK--CK-GFGFVTMTNYEEASMAIASLNG 307
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 107 (42.7 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S VEE
Sbjct: 16 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 75
Query: 82 E 82
+
Sbjct: 76 D 76
Score = 100 (40.3 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 113 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 170
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 171 VQKYHTINGH 180
Score = 42 (19.8 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 139 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 170
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 88 (36.0 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + + V+ +T+RS GFGFV S V
Sbjct: 5 DPKEPEQRRKLFIGGLSFETTDDSLREHFKWDTLTDCV-VMRDPQTERSRGFGFV-YSCV 62
Query: 79 EEAE 82
EE +
Sbjct: 63 EEVD 66
Score = 52 (23.4 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126
K +E+ ++G GF F T D ++ + G + H
Sbjct: 128 KTIEVVEDRQSGKKRGFAFLTFDDHDTVDKIVGRGGGSGDFMRH 171
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A V
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDV 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 129 (50.5 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 102 (41.0 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KLFVG + ++ +E A+ F + G V S ++ R T GFGFVT + AEKV+E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Score = 49 (22.3 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 91 YETGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124
+ TG S GFGF T E ++ + DG+ L
Sbjct: 192 HHTGRSRGFGFVTFQTEDSVDRLFS--DGKVHEL 223
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 104 (41.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 89 NRYETG 94
N Y G
Sbjct: 367 NGYRLG 372
Score = 92 (37.4 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 18 VDYSEPPEDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTM 75
V+ ED+K L V L ++ E+L LF G +E +++ + T +S G+GFV
Sbjct: 57 VEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 116
Query: 76 STVEEAEKVVEMFN 89
++AEK + N
Sbjct: 117 MEPKDAEKAINTLN 130
Score = 87 (35.7 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 141 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFI 200
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 201 RFDRRVEAEEAIKGLN 216
Score = 60 (26.2 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 335 KVIRDFNTNK--CK-GFGFVTMTNYDEAAVAIASLNG 368
Score = 51 (23.0 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 191 TGVSRGVGFIRFDRRVEAEEAIKGLNGQ 218
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KL VG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KL VG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KL VG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 107 (42.7 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 27/68 (39%), Positives = 37/68 (54%)
Query: 21 SEPPED-AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMST 77
SE P D K+F+G L + E L F + G +ISE + ++ T RS GFGFVT S
Sbjct: 22 SEVPNDPGKMFIGGLSWQTSPESLRDYFGRYG--DISEAMVMKDPTTRRSRGFGFVTFSD 79
Query: 78 VEEAEKVV 85
+KV+
Sbjct: 80 PNSVDKVL 87
Score = 105 (42.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L E + F Q G +E + ++F ++T+R GFGFVT + + +KV E+
Sbjct: 119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEI 178
Score = 43 (20.2 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 82 EKVVEMFNRYETGCSHGFGFFTMSDE 107
E + MF++ +T GFGF T E
Sbjct: 145 EDAMLMFDK-QTNRHRGFGFVTFQSE 169
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 104 (41.7 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 89 NRYETG 94
N Y G
Sbjct: 325 NGYRLG 330
Score = 90 (36.7 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
ED+K L V L ++ E+L LF G +E +++ + T +S G+GFV ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 60 (26.2 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 293 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 326
Score = 52 (23.4 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 114 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 171
Query: 88 FNRYETGCSH 97
+Y TG H
Sbjct: 172 IQKYHTGNGH 181
Score = 105 (42.0 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
KLF+G L ++ E L F Q G++ V+ T RS GFGFVT +TVEE +
Sbjct: 24 KLFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTTVEEVD 77
Score = 43 (20.2 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 140 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 171
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL D D L +F G V +VI T++ GFGFVTM+ EEA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 89 NRYETG 94
N Y G
Sbjct: 306 NGYRLG 311
Score = 89 (36.4 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L ++ E+L LF+ G VE +++I + S G+GFV T ++AE+ +
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 89 N 89
N
Sbjct: 82 N 82
Score = 60 (26.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 274 KVIRDFNTNK--CK-GFGFVTMTNYEEAAMAIASLNG 307
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL D D L +F G V +VI T++ GFGFVTM+ EEA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 89 NRYETG 94
N Y G
Sbjct: 306 NGYRLG 311
Score = 89 (36.4 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L ++ E+L LF+ G VE +++I + S G+GFV T ++AE+ +
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 89 N 89
N
Sbjct: 82 N 82
Score = 60 (26.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 274 KVIRDFNTNK--CK-GFGFVTMTNYEEAAMAIASLNG 307
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 104 (41.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 89 NRYETG 94
N Y G
Sbjct: 338 NGYRLG 343
Score = 90 (36.7 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
ED+K L V L ++ E+L LF G +E +++ + T +S G+GFV ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 60 (26.2 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 306 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 339
Score = 52 (23.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 90 (36.7 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 20 YSEPP--EDAK-LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
Y P E+ + L++G+L+Y VD L F+Q G + +VI + T + G+GF+
Sbjct: 14 YHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFI 73
Query: 77 TVEEAEKVVEMFN 89
+ AE+ ++ +N
Sbjct: 74 SHAAAERTLQTYN 86
Score = 62 (26.9 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDG 119
TG S G+GF ++ES+ N A+A ++G
Sbjct: 154 TGRSKGYGFVKFAEESERNRAMAEMNG 180
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 104 (41.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 89 NRYETG 94
N Y G
Sbjct: 339 NGYRLG 344
Score = 90 (36.7 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
ED+K L V L ++ E+L LF G +E +++ + T +S G+GFV ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 60 (26.2 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 307 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 340
Score = 52 (23.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 105 (42.0 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 21 SEPPEDA----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVT 74
SE P+D KLF+G L ++ +E L F Q G+ +++ + R+ T S GFGFVT
Sbjct: 18 SESPKDPEQLQKLFIGGLSFETTNESLRSHFEQLGM--LTDCVEMRDPNTKHSRGFGFVT 75
Query: 75 MSTVEEAE 82
+T+EE +
Sbjct: 76 YATMEEVD 83
Score = 43 (20.2 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 148 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 179
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 103 (41.3 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMS 76
D EP + KLF+G L ++ + L F Q G ++++ + R+ RS GFGFVT S
Sbjct: 5 DSKEPEQLRKLFIGGLSFETTEDSLRAHFEQWG--KLTDCVVMRDPANKRSRGFGFVTYS 62
Query: 77 TVEEAE 82
+V E +
Sbjct: 63 SVSEVD 68
Score = 93 (37.8 bits), Expect = 0.00057, P = 0.00057
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + + F G +E +++ R T + GF FVT + +K+V
Sbjct: 105 KIFVGGIKEDTEEYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQ 164
Query: 88 FNRYETGCSH 97
+Y T SH
Sbjct: 165 --KYHTINSH 172
Score = 44 (20.5 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIA 115
+ +++ TG GF F T D ++ +A
Sbjct: 131 ETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVA 163
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG LR+ D + L + F++ G V S++I RET RS GFGFVT ++ E + +E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 88 FN 89
N
Sbjct: 67 MN 68
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KL+VGNL Y V L F G V+ ++V+ R T RS GFGFV M + +EA+ +
Sbjct: 3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62
Query: 87 MFNRYE 92
N E
Sbjct: 63 GLNGKE 68
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 108 (43.1 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ +E L F Q G++ V+ T S GFGFVT +TV+E
Sbjct: 9 EPEQLRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 37 (18.1 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESK 109
+V+E+ +G GF T D K
Sbjct: 129 EVIEIMTDRGSGKKRGFASVTFDDHDK 155
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 107 (42.7 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S VEE
Sbjct: 28 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 87
Query: 82 E 82
+
Sbjct: 88 D 88
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 125 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 182
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 183 VQKYHTINGH 192
Score = 42 (19.8 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 151 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 182
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 104 (41.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 89 NRYETG 94
N Y G
Sbjct: 366 NGYRLG 371
Score = 90 (36.7 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
ED+K L V L ++ E+L LF G +E +++ + T +S G+GFV ++AE
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 122
Query: 83 KVVEMFN 89
K + N
Sbjct: 123 KAINTLN 129
Score = 60 (26.2 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 334 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 367
Score = 52 (23.4 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 190 TGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 104 (41.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 89 NRYETG 94
N Y G
Sbjct: 368 NGYRLG 373
Score = 90 (36.7 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
ED+K L V L ++ E+L LF G +E +++ + T +S G+GFV ++AE
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 83 KVVEMFN 89
K + N
Sbjct: 124 KAINTLN 130
Score = 60 (26.2 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 336 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 369
Score = 52 (23.4 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 191 TGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 104 (41.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 89 NRYETG 94
N Y G
Sbjct: 367 NGYRLG 372
Score = 90 (36.7 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
ED+K L V L ++ E+L LF G +E +++ + T +S G+GFV ++AE
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 83 KVVEMFN 89
K + N
Sbjct: 124 KAINTLN 130
Score = 60 (26.2 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 335 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 368
Score = 52 (23.4 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 191 TGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 106 (42.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
KLF+G L ++ E L F Q G + S V+ T RS GFGFVT +TVEE +
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVD 55
Score = 35 (17.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 98 GFGFFTMSDESKLNDAI 114
GF FFT D ++ +
Sbjct: 125 GFCFFTFDDHDSVDKIV 141
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 104 (41.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 89 NRYETG 94
N Y G
Sbjct: 367 NGYRLG 372
Score = 89 (36.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
ED+K L V L + E+L LF G +E +++ + T +S G+GFV ++AE
Sbjct: 63 EDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 122
Query: 83 KVVEMFN 89
K + N
Sbjct: 123 KAINTLN 129
Score = 88 (36.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 140 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFI 199
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 200 RFDKRIEAEEAIKGLN 215
Score = 60 (26.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 335 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 368
Score = 52 (23.4 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 190 TGMSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 126 (49.4 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L+ D++ E L F+Q G +E ++VI ++T + GFGFV + A+K V M
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVM 157
Query: 88 FNRYETGCSH 97
++ + C H
Sbjct: 158 --KFHSICGH 165
Score = 91 (37.1 bits), Expect = 0.00090, P = 0.00090
Identities = 23/55 (41%), Positives = 28/55 (50%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
KLFVG L E L F Q G + V+ + RS FGFVT S+ EEA+
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEAD 61
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 126 (49.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G + Y +D + L F + G V + VI RET RS GFGFVT ++ E A ++
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 96 (38.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P E L++G+L+Y +D L+ F G + ++VI ++T +S G+GF+ + AE
Sbjct: 80 PNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAE 139
Query: 83 KVVEMFN 89
+++ +N
Sbjct: 140 TILQTYN 146
Score = 53 (23.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDG 119
TG S G+GF +DES+ A+ ++G
Sbjct: 214 TGRSKGYGFVKFADESEQLRAMTEMNG 240
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 101 (40.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 21 EFTNVYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 79
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 80 VDEMNGKE 87
Score = 100 (40.3 bits), Expect = 0.00019, P = 0.00019
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 124 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 181
Query: 85 VEMFN 89
V N
Sbjct: 182 VTEMN 186
Score = 49 (22.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 160 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 188
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 110 (43.8 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+V
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV-- 169
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 170 LQKYHTINGH 179
Score = 95 (38.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L ++ E L + + Q G ++++ + R+ + RS GFGFVT S++
Sbjct: 15 EKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMA 72
Query: 80 EAE 82
E +
Sbjct: 73 EVD 75
Score = 50 (22.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 79 EEAEKV--VEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
EE K+ +E+ ++G GFGF T D ++ +
Sbjct: 132 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 169
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL D D L +F G V +VI T++ GFGFVTM+ EEA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 89 NRYETG 94
N Y G
Sbjct: 306 NGYRLG 311
Score = 86 (35.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L ++ ++L LF+ G VE +++I + S G+GFV T ++AE+ +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 89 N 89
N
Sbjct: 82 N 82
Score = 60 (26.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 274 KVIRDFNTNK--CK-GFGFVTMTNYEEAAMAIASLNG 307
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL D D L +F G V +VI T++ GFGFVTM+ EEA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 89 NRYETG 94
N Y G
Sbjct: 306 NGYRLG 311
Score = 86 (35.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L ++ ++L LF+ G VE +++I + S G+GFV T ++AE+ +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 89 N 89
N
Sbjct: 82 N 82
Score = 60 (26.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 274 KVIRDFNTNK--CK-GFGFVTMTNYEEAAMAIASLNG 307
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL D D L +F G V +VI T++ GFGFVTM+ EEA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 89 NRYETG 94
N Y G
Sbjct: 306 NGYRLG 311
Score = 86 (35.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L ++ ++L LF+ G VE +++I + S G+GFV T ++AE+ +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 89 N 89
N
Sbjct: 82 N 82
Score = 60 (26.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 274 KVIRDFNTNK--CK-GFGFVTMTNYEEAAMAIASLNG 307
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 105 (42.0 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL D D L +F G V +VI T++ GFGFVTM+ EEA +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 89 NRYETG 94
N Y G
Sbjct: 314 NGYRLG 319
Score = 86 (35.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L ++ ++L LF+ G VE +++I + S G+GFV T ++AE+ +
Sbjct: 30 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 89
Query: 89 N 89
N
Sbjct: 90 N 90
Score = 60 (26.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 282 KVIRDFNTNK--CK-GFGFVTMTNYEEAAMAIASLNG 315
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 31/95 (32%), Positives = 49/95 (51%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D PP D LF+GNL ++ + + L ++F + G V V + +T + GFG+V S+V
Sbjct: 263 DSQSPPSDT-LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSV 321
Query: 79 EEAEKVVEMFN-RYETGCSHGFGFFTMSDESKLND 112
+EA+ +E N Y G F T D + N+
Sbjct: 322 DEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNNNN 356
Score = 102 (41.0 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E A LFVG L +++D L F G V + VI R T +S G+G+V + AEK
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 85 VE 86
+E
Sbjct: 226 LE 227
Score = 39 (18.8 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 98 GFGFFTMSDESKLNDAIAALDGQ 120
GFG+ S + A+ A++G+
Sbjct: 312 GFGYVQFSSVDEAKAALEAMNGE 334
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 31/95 (32%), Positives = 49/95 (51%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D PP D LF+GNL ++ + + L ++F + G V V + +T + GFG+V S+V
Sbjct: 263 DSQSPPSDT-LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSV 321
Query: 79 EEAEKVVEMFN-RYETGCSHGFGFFTMSDESKLND 112
+EA+ +E N Y G F T D + N+
Sbjct: 322 DEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNNNN 356
Score = 102 (41.0 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E A LFVG L +++D L F G V + VI R T +S G+G+V + AEK
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 85 VE 86
+E
Sbjct: 226 LE 227
Score = 39 (18.8 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 98 GFGFFTMSDESKLNDAIAALDGQ 120
GFG+ S + A+ A++G+
Sbjct: 312 GFGYVQFSSVDEAKAALEAMNGE 334
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 106 (42.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD-RSTGFGFVTMSTVEEAEKVVEM 87
++V NLR D+D + L LF+Q G + +V+ R+++ +S GFGF+ EEA+K V+
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVM--RDSNGQSRGFGFINFEKHEEAQKAVDH 250
Query: 88 FNRYE 92
N E
Sbjct: 251 MNGKE 255
Score = 100 (40.3 bits), Expect = 0.00026, P = 0.00026
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL ++ ++L +F+ GV+ ++V+ E+ S GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVM--TESSHSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 90 (36.7 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + S+V+ Y E S GFGFV T E A+K +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVV-YNEHG-SRGFGFVHFETHEAAQKAINTM 158
Query: 89 N 89
N
Sbjct: 159 N 159
Score = 46 (21.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+ S GFGF S + A+ ++G+
Sbjct: 328 ESSHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 44 (20.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 90 RYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
R G S GFGF + A+ ++G+
Sbjct: 224 RDSNGQSRGFGFINFEKHEEAQKAVDHMNGK 254
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D L F+ G + V+ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 100 (40.3 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 161 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 218
Query: 85 VEMFN 89
V N
Sbjct: 219 VTEMN 223
Score = 94 (38.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF A +S + E+ +S GFGFV+ E+A+K
Sbjct: 61 EFTNVYIKNFGEDMDDERLKDLFGPA----LSVKVMTDESGKSKGFGFVSFERHEDAQKA 116
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 117 VDEMNGKE 124
Score = 49 (22.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 197 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 225
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 106 (42.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 89 NRYETG 94
N Y G
Sbjct: 330 NGYRLG 335
Score = 86 (35.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 117 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 176
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 177 RFDKRIEAEEAIKGLN 192
Score = 83 (34.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 40 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 99
Query: 83 KVVEMFN 89
K + N
Sbjct: 100 KAINTLN 106
Score = 60 (26.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 298 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 331
Score = 52 (23.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 167 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 194
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 97 (39.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T RS GFGFVT S
Sbjct: 5 DPKEPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCE 64
Query: 79 E 79
E
Sbjct: 65 E 65
Score = 96 (38.9 bits), Expect = 0.00015, P = 0.00015
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D L F + G +E EV+ R++ + GF FVT + +K+V
Sbjct: 104 KIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 161
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 162 VQKYHTINGH 171
Score = 42 (19.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +E+ ++G GF F T D ++ +
Sbjct: 130 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 161
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 105 (42.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL D D L +F G V +VI T++ GFGFVTM+ EEA +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 89 NRYETG 94
N Y G
Sbjct: 333 NGYRLG 338
Score = 86 (35.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L ++ ++L LF+ G VE +++I + S G+GFV T ++AE+ +
Sbjct: 49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 108
Query: 89 N 89
N
Sbjct: 109 N 109
Score = 60 (26.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 301 KVIRDFNTNK--CK-GFGFVTMTNYEEAAMAIASLNG 334
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 101 (40.6 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F + G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLQKLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEV 67
Query: 82 E 82
+
Sbjct: 68 D 68
Score = 42 (19.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ I
Sbjct: 129 EVIEIMTDRGSGKKRGFTFVTFDDHDSVDKII 160
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 110 (43.8 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+V
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV-- 158
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 159 LQKYHTINGH 168
Score = 95 (38.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L ++ E L + + Q G ++++ + R+ + RS GFGFVT S++
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMA 61
Query: 80 EAE 82
E +
Sbjct: 62 EVD 64
Score = 50 (22.7 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 79 EEAEKV--VEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
EE K+ +E+ ++G GFGF T D ++ +
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 106 (42.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 89 NRYETG 94
N Y G
Sbjct: 345 NGYRLG 350
Score = 86 (35.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 119 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 178
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 179 RFDKRIEAEEAIKGLN 194
Score = 83 (34.3 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 83 KVVEMFN 89
K + N
Sbjct: 102 KAINTLN 108
Score = 60 (26.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 313 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 346
Score = 52 (23.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 169 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 106 (42.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 89 NRYETG 94
N Y G
Sbjct: 345 NGYRLG 350
Score = 86 (35.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 119 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 178
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 179 RFDKRIEAEEAIKGLN 194
Score = 83 (34.3 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 83 KVVEMFN 89
K + N
Sbjct: 102 KAINTLN 108
Score = 60 (26.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 313 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 346
Score = 52 (23.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 169 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 110 (43.8 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+V
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV-- 169
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 170 LQKYHTINGH 179
Score = 95 (38.5 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L ++ E L + + Q G ++++ + R+ + RS GFGFVT S++
Sbjct: 15 EKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMA 72
Query: 80 EAE 82
E +
Sbjct: 73 EVD 75
Score = 50 (22.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 79 EEAEKV--VEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
EE K+ +E+ ++G GFGF T D ++ +
Sbjct: 132 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 169
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F G + V+ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 110 (43.8 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+V
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV-- 170
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 171 LQKYHTINGH 180
Score = 95 (38.5 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L ++ E L + + Q G ++++ + R+ + RS GFGFVT S++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 80 EAE 82
E +
Sbjct: 74 EVD 76
Score = 50 (22.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 79 EEAEKV--VEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
EE K+ +E+ ++G GFGF T D ++ +
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 110 (43.8 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+V
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV-- 170
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 171 LQKYHTINGH 180
Score = 95 (38.5 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L ++ E L + + Q G ++++ + R+ + RS GFGFVT S++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 80 EAE 82
E +
Sbjct: 74 EVD 76
Score = 50 (22.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 79 EEAEKV--VEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
EE K+ +E+ ++G GFGF T D ++ +
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 110 (43.8 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+V
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV-- 170
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 171 LQKYHTINGH 180
Score = 95 (38.5 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L ++ E L + + Q G ++++ + R+ + RS GFGFVT S++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 80 EAE 82
E +
Sbjct: 74 EVD 76
Score = 50 (22.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 79 EEAEKV--VEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
EE K+ +E+ ++G GFGF T D ++ +
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 106 (42.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+V
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
Score = 95 (38.5 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L ++ E L + + Q G ++++ + R+ + RS GFGFVT S++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 80 EAE 82
E +
Sbjct: 74 EVD 76
Score = 50 (22.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 79 EEAEKV--VEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
EE K+ +E+ ++G GFGF T D ++ +
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 106 (42.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 89 NRYETG 94
N Y G
Sbjct: 350 NGYRLG 355
Score = 86 (35.3 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 124 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 183
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 184 RFDKRIEAEEAIKGLN 199
Score = 83 (34.3 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 83 KVVEMFN 89
K + N
Sbjct: 107 KAINTLN 113
Score = 60 (26.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 318 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 351
Score = 52 (23.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 174 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 106 (42.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 89 NRYETG 94
N Y G
Sbjct: 350 NGYRLG 355
Score = 86 (35.3 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 124 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 183
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 184 RFDKRIEAEEAIKGLN 199
Score = 83 (34.3 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 83 KVVEMFN 89
K + N
Sbjct: 107 KAINTLN 113
Score = 60 (26.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 318 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 351
Score = 52 (23.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 174 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 106 (42.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 89 NRYETG 94
N Y G
Sbjct: 352 NGYRLG 357
Score = 86 (35.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 172 RFDKRIEAEEAIKGLN 187
Score = 83 (34.3 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 60 (26.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 320 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 353
Score = 52 (23.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 106 (42.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 89 NRYETG 94
N Y G
Sbjct: 352 NGYRLG 357
Score = 86 (35.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 172 RFDKRIEAEEAIKGLN 187
Score = 83 (34.3 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 60 (26.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 320 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 353
Score = 52 (23.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 106 (42.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 89 NRYETG 94
N Y G
Sbjct: 387 NGYRLG 392
Score = 87 (35.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 161 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFI 220
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 221 RFDKRIEAEEAIKGLN 236
Score = 83 (34.3 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 84 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 143
Query: 83 KVVEMFN 89
K + N
Sbjct: 144 KAINTLN 150
Score = 60 (26.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 355 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 388
Score = 50 (22.7 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 211 TGGSRGVGFIRFDKRIEAEEAIKGLNGQ 238
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 89 NRYETG 94
N Y G
Sbjct: 359 NGYRLG 364
Score = 86 (35.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 119 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 178
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 179 RFDKRIEAEEAIKGLN 194
Score = 83 (34.3 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 83 KVVEMFN 89
K + N
Sbjct: 102 KAINTLN 108
Score = 60 (26.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 327 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 360
Score = 52 (23.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 169 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 89 NRYETG 94
N Y G
Sbjct: 359 NGYRLG 364
Score = 86 (35.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 119 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 178
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 179 RFDKRIEAEEAIKGLN 194
Score = 83 (34.3 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 83 KVVEMFN 89
K + N
Sbjct: 102 KAINTLN 108
Score = 60 (26.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 327 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 360
Score = 52 (23.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 169 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 89 NRYETG 94
N Y G
Sbjct: 361 NGYRLG 366
Score = 86 (35.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 135 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 194
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 195 RFDKRIEAEEAIKGLN 210
Score = 83 (34.3 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 58 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 117
Query: 83 KVVEMFN 89
K + N
Sbjct: 118 KAINTLN 124
Score = 60 (26.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 329 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 362
Score = 52 (23.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 185 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 212
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 89 NRYETG 94
N Y G
Sbjct: 363 NGYRLG 368
Score = 86 (35.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 123 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 182
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 183 RFDKRIEAEEAIKGLN 198
Score = 83 (34.3 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 46 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 105
Query: 83 KVVEMFN 89
K + N
Sbjct: 106 KAINTLN 112
Score = 60 (26.2 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 331 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 364
Score = 52 (23.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 173 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 200
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 101 (40.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 125 EFTNVYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 183
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 184 VDEMNGKE 191
Score = 100 (40.3 bits), Expect = 0.00024, P = 0.00024
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 228 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 285
Query: 85 VEMFN 89
V N
Sbjct: 286 VTEMN 290
Score = 81 (33.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + +V+ + + S G+GFV T E AE+ +E
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 94
Query: 89 N 89
N
Sbjct: 95 N 95
Score = 49 (22.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 264 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 292
Score = 45 (20.9 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 162 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 190
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 89 NRYETG 94
N Y G
Sbjct: 364 NGYRLG 369
Score = 86 (35.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 124 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 183
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 184 RFDKRIEAEEAIKGLN 199
Score = 83 (34.3 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 83 KVVEMFN 89
K + N
Sbjct: 107 KAINTLN 113
Score = 60 (26.2 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 332 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 365
Score = 52 (23.4 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 174 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 89 NRYETG 94
N Y G
Sbjct: 364 NGYRLG 369
Score = 86 (35.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 124 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 183
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 184 RFDKRIEAEEAIKGLN 199
Score = 83 (34.3 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 83 KVVEMFN 89
K + N
Sbjct: 107 KAINTLN 113
Score = 60 (26.2 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 332 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 365
Score = 52 (23.4 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 174 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 104 (41.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 89 NRYETG 94
N Y G
Sbjct: 368 NGYRLG 373
Score = 86 (35.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF+
Sbjct: 140 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 199
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 200 RFDKRIEAEEAIKGLN 215
Score = 85 (35.0 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 21 SEPPEDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD-RSTGFGFVTMST 77
S ED+K L V L ++ E+L LF G +E +++ + T+ +S G+GFV
Sbjct: 58 SNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYID 117
Query: 78 VEEAEKVVEMFN 89
++AEK + N
Sbjct: 118 PKDAEKAINTLN 129
Score = 60 (26.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 336 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 369
Score = 52 (23.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 190 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 102 (41.0 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ NL D+D E+L LF++ G +S + E+ +S GFGFV+ E+A K
Sbjct: 189 EFTNVYIKNLGEDMDDERLQDLFSRFGPA-LSVKVMTDESGKSKGFGFVSFERHEDARKA 247
Query: 85 VEMFN 89
V+ N
Sbjct: 248 VDEMN 252
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 27/71 (38%), Positives = 36/71 (50%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D S + L+V NL +D E+L F+ G + ++V E RS GFGFV S+
Sbjct: 296 DRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM--EGGRSKGFGFVCFSSP 353
Query: 79 EEAEKVVEMFN 89
EEA K V N
Sbjct: 354 EEATKAVTEMN 364
Score = 91 (37.1 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL +DS+ L F+ G + +V+ + + S G+GFV T EEAE+ +E
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEEAERAIEKM 158
Query: 89 N 89
N
Sbjct: 159 N 159
Score = 90 (36.7 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 21 SEPPED-AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
S+P A L+VG+L DV L F+ AG + V R T RS G+ V +E
Sbjct: 4 SDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLE 63
Query: 80 EAEKVVEMFN 89
+AE+ ++ N
Sbjct: 64 DAERALDTMN 73
Score = 49 (22.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 338 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 366
Score = 45 (20.9 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 226 ESGKSKGFGFVSFERHEDARKAVDEMNGK 254
Score = 37 (18.1 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDG 119
E G S G+GF + + AI ++G
Sbjct: 134 ENG-SKGYGFVHFETQEEAERAIEKMNG 160
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 100 (40.3 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD-RSTGFGFVTMSTVEEAEKVV 85
+FV N+ D+D EKL LF + G E +VI R+ +S GFGFV T E A+K V
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVI--RDASGKSKGFGFVRYETHEAAQKAV 92
Score = 93 (37.8 bits), Expect = 0.00028, P = 0.00028
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S PP +++ NL ++ EKL F+ G + ++V+ E + GFG V S+ EE
Sbjct: 133 SRPP-GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEE 189
Query: 81 AEKVVEMFN 89
A K V+ N
Sbjct: 190 ATKAVDEMN 198
Score = 36 (17.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G GFG S + A+ ++G+
Sbjct: 172 EVGQGKGFGVVCFSSFEEATKAVDEMNGR 200
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 102 (41.0 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL + D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 89 NRYETG 94
N Y G
Sbjct: 346 NGYRLG 351
Score = 87 (35.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + +++ LF+Q G + S ++ + T S G GF+
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFI 171
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 172 RFDKRIEAEEAIKGLN 187
Score = 81 (33.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ ++ LF G +E +++ + T +S G+GFV S +A+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 58 (25.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 85 VEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
V++ + T GFGF TM++ + AIA+L+G
Sbjct: 313 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 52 (23.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 102 (41.0 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL + D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 89 NRYETG 94
N Y G
Sbjct: 346 NGYRLG 351
Score = 87 (35.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + +++ LF+Q G + S ++ + T S G GF+
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFI 171
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 172 RFDKRIEAEEAIKGLN 187
Score = 81 (33.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ ++ LF G +E +++ + T +S G+GFV S +A+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 58 (25.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 85 VEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
V++ + T GFGF TM++ + AIA+L+G
Sbjct: 313 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 52 (23.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 106 (42.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI--F 170
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 171 LQKYHTINGH 180
Score = 95 (38.5 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L ++ E L + + Q G ++++ + R+ + RS GFGFVT S++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 80 EAE 82
E +
Sbjct: 74 EVD 76
Score = 49 (22.3 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 79 EEAEKV--VEMFNRYETGCSHGFGFFTMSDESKLN 111
EE K+ +E+ ++G GFGF T D ++
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVD 167
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLF+G L ++ + + L F + G ISEV+ RET RS GFGFVT V++A+
Sbjct: 3 DEGKLFIGGLNFETNEDCLEQAFTKYG--RISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
Query: 83 KVVEMFN 89
+ N
Sbjct: 61 DAMMAMN 67
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 123 (48.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K+FVG L+ D++ + L F+Q G++E SEVI ++T + GFGFV + A+K V
Sbjct: 100 KIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAV 157
Score = 93 (37.8 bits), Expect = 0.00058, P = 0.00058
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
SE + KLFVG L ++ L F Q G + V+ + RS FGFVT ST EE
Sbjct: 2 SEMEKLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEE 61
Query: 81 AE 82
A+
Sbjct: 62 AD 63
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 112 (44.5 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVEEA 81
P KLFVG L + S+KL FN G V ++V+ ++ T RS GFGF+T
Sbjct: 200 PAPGKLFVGGLSWQTSSDKLKEYFNMFGTV--TDVLIMKDPVTQRSRGFGFITFQEPCTV 257
Query: 82 EKVVEM 87
EKV+++
Sbjct: 258 EKVLKV 263
Score = 105 (42.0 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG + D +E++ F+Q G VE + ++ ++T R GFGFVT + ++V E+
Sbjct: 292 KIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEI 351
Score = 38 (18.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 82 EKVVEMFNRYETGCSHGFGFFTMSDE 107
E+ V + ++ +T GFGF T +E
Sbjct: 318 EETVMLMDQ-QTKRHRGFGFVTFENE 342
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 89 (36.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 26 DAK-LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
D K L++G+L+ +D + +F Q+G ++VI + T +S G+GF+ + AE+V
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 85 VEMFN 89
++ +N
Sbjct: 118 LQTYN 122
Score = 56 (24.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G+GF +DE++ A+ ++GQ
Sbjct: 192 TGRSKGYGFVRFADENEQMRAMTEMNGQ 219
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 101 (40.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 248 VDEMNGKE 255
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 81 (33.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + +V+ + + S G+GFV T E AE+ +E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 89 N 89
N
Sbjct: 159 N 159
Score = 49 (22.3 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 101 (40.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 248 VDEMNGKE 255
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 81 (33.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + +V+ + + S G+GFV T E AE+ +E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 89 N 89
N
Sbjct: 159 N 159
Score = 49 (22.3 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 104 (41.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 89 NRYETG 94
N Y G
Sbjct: 338 NGYRLG 343
Score = 84 (34.6 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 25 EDAKL-FVGN-LRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
ED+K + N L ++ E+L LF G +E +++ + T +S G+GFV ++AE
Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 60 (26.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 306 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 339
Score = 52 (23.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 104 (41.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L +F G V +VI T++ GFGFVTM+ +EA +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 89 NRYETG 94
N Y G
Sbjct: 338 NGYRLG 343
Score = 84 (34.6 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 25 EDAKL-FVGN-LRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
ED+K + N L ++ E+L LF G +E +++ + T +S G+GFV ++AE
Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 60 (26.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 306 KVIRDFNTNK--CK-GFGFVTMTNYDEAAMAIASLNG 339
Score = 52 (23.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 103 (41.3 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KLF+G + +D D E+L F + G + + ++ R T R+ GFGF+ + AE+V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI 73
Score = 43 (20.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 84 VVEMFNRYETGCSHGFGFFTMSDESKLN 111
VV M++ + T GFGF T E ++
Sbjct: 151 VVVMYD-HNTQRPRGFGFITFDSEESVD 177
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 100 (40.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 144 EFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 202
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 203 VDEMNGKE 210
Score = 100 (40.3 bits), Expect = 0.00025, P = 0.00025
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 247 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 304
Query: 85 VEMFN 89
V N
Sbjct: 305 VTEMN 309
Score = 81 (33.6 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + +V+ + + S G+GFV T E AE+ +E
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 113
Query: 89 N 89
N
Sbjct: 114 N 114
Score = 49 (22.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 283 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 311
Score = 45 (20.9 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 181 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 209
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 100 (40.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 215
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 216 VDEMNGKE 223
Score = 100 (40.3 bits), Expect = 0.00026, P = 0.00026
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 260 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 317
Query: 85 VEMFN 89
V N
Sbjct: 318 VTEMN 322
Score = 49 (22.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 296 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 324
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 100 (40.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E ++V NL DVD L LF+Q G + +S + ++ S GFGFV E+A+K
Sbjct: 189 EFTNIYVKNLHVDVDERCLQDLFSQFGKI-LSVKVMRDDSGHSRGFGFVNFEKHEDAQKA 247
Query: 85 VEMFNRYE 92
V N E
Sbjct: 248 VTDMNGKE 255
Score = 96 (38.9 bits), Expect = 0.00071, P = 0.00071
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D EKL F G++ ++V+ E S GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVM--TEGGHSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 49 (22.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 111 (44.1 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+E A LFVGNL ++V E L F Q G + + ++ R+T RS GFG+V + +
Sbjct: 271 TEEGASANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAAD 329
Query: 81 AEKVVEMFNRYE 92
A K E +E
Sbjct: 330 AAKAYEAMKEHE 341
Score = 36 (17.7 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDG 119
E+G GFG+ S + A L G
Sbjct: 420 ESGRPKGFGYVQYSSVDEARKAYNELQG 447
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 99 (39.9 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF++ G +S + T +S GFGFV+ E+A K
Sbjct: 189 EFTNVYIKNFGDDMDDERLKELFSKYGKT-LSVKVMTDPTGKSKGFGFVSFEKHEDANKA 247
Query: 85 VEMFN 89
VE N
Sbjct: 248 VEEMN 252
Score = 78 (32.5 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VG+L DV L F+ AG V V T RS G+ +V +AE+ ++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 MFN 89
N
Sbjct: 71 TMN 73
Score = 52 (23.4 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S GFGF + N A+ ++G+
Sbjct: 227 TGKSKGFGFVSFEKHEDANKAVEEMNGK 254
Score = 50 (22.7 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 100 (40.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 248 VDEMNGKE 255
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 81 (33.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + +V+ + + S G+GFV T E AE+ +E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 89 N 89
N
Sbjct: 159 N 159
Score = 49 (22.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 100 (40.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 248 VDEMNGKE 255
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 81 (33.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + +V+ + + S G+GFV T E AE+ +E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 89 N 89
N
Sbjct: 159 N 159
Score = 49 (22.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 100 (40.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 248 VDEMNGKE 255
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 81 (33.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + +V+ + + S G+GFV T E AE+ +E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 89 N 89
N
Sbjct: 159 N 159
Score = 49 (22.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 100 (40.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 248 VDEMNGKE 255
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 81 (33.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + +V+ + + S G+GFV T E AE+ +E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 89 N 89
N
Sbjct: 159 N 159
Score = 49 (22.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 100 (40.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 248 VDEMNGKE 255
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 81 (33.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + +V+ + + S G+GFV T E AE+ +E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 89 N 89
N
Sbjct: 159 N 159
Score = 49 (22.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D EKL F+ GV+ ++V+ E S GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 99 (39.9 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E ++V NL DVD + L LF++ G + +S + ++ S GFGFV EEA+K
Sbjct: 189 EFTNIYVKNLHVDVDEQGLQDLFSRFGKM-LSVKVMRDDSGHSRGFGFVNFQKHEEAQKA 247
Query: 85 VEMFNRYE 92
V N E
Sbjct: 248 VMDMNGKE 255
Score = 50 (22.7 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124
E G S GFGF S + A+ ++G RIL
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNG--RIL 358
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 99 (39.9 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N +VD E L LF+Q G +S + + +S GFGFV+ E+A K
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKT-LSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 85 VEMFNRYE-TG 94
VE N E TG
Sbjct: 248 VEEMNGKEITG 258
Score = 79 (32.9 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VG+L DV L F+ AG V V T RS G+ +V +AE+ ++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 MFN 89
N
Sbjct: 71 TMN 73
Score = 50 (22.7 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 100 (40.3 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 248 VDEMNGKE 255
Score = 100 (40.3 bits), Expect = 0.00029, P = 0.00029
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 81 (33.6 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +D++ L F+ G + +V+ + + S G+GFV T E AE+ +E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 89 N 89
N
Sbjct: 159 N 159
Score = 49 (22.3 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E+G S GFGF + A+ ++G+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 91 (37.1 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L++G+L+Y +D L F G + ++VI ++T + G+GF+ ++ AE+V++ F
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 89 N 89
N
Sbjct: 124 N 124
Score = 82 (33.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQA-GVVEISEVIFYRETDRSTGFGFVTMST 77
D + D +FVG+L DV L F + V+ ++V+ R T R+ G+GFV S
Sbjct: 147 DKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFS- 205
Query: 78 VEEAEKVVEMFNRYETGCS 96
+E+E++ M CS
Sbjct: 206 -DESEQIRAMTEMNGVPCS 223
Score = 53 (23.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDG 119
TG + G+GF SDES+ A+ ++G
Sbjct: 193 TGRTKGYGFVRFSDESEQIRAMTEMNG 219
Score = 34 (17.0 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 100 GFFTMSDESKLNDAIAALDG 119
GF S++S +A+ L+G
Sbjct: 299 GFVQFSEKSCAEEALRMLNG 318
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 102 (41.0 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL + D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 89 NRYETG 94
N Y G
Sbjct: 346 NGYRLG 351
Score = 85 (35.0 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + +++ LF+Q G + S ++ + T S G GF+
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 172 RFDKRIEAEEAIKGLN 187
Score = 81 (33.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ ++ LF G +E +++ + T +S G+GFV S +A+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 58 (25.5 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 85 VEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
V++ + T GFGF TM++ + AIA+L+G
Sbjct: 313 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 52 (23.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 102 (41.0 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL + D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 89 NRYETG 94
N Y G
Sbjct: 346 NGYRLG 351
Score = 85 (35.0 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + +++ LF+Q G + S ++ + T S G GF+
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 172 RFDKRIEAEEAIKGLN 187
Score = 81 (33.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ ++ LF G +E +++ + T +S G+GFV S +A+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 58 (25.5 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 85 VEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
V++ + T GFGF TM++ + AIA+L+G
Sbjct: 313 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 52 (23.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 102 (41.0 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL + D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 89 NRYETG 94
N Y G
Sbjct: 346 NGYRLG 351
Score = 85 (35.0 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + +++ LF+Q G + S ++ + T S G GF+
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 172 RFDKRIEAEEAIKGLN 187
Score = 81 (33.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ ++ LF G +E +++ + T +S G+GFV S +A+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 58 (25.5 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 85 VEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
V++ + T GFGF TM++ + AIA+L+G
Sbjct: 313 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 52 (23.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 102 (41.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL + D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 89 NRYETG 94
N Y G
Sbjct: 347 NGYRLG 352
Score = 85 (35.0 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 18 VDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
V Y+ P DA L+V L + +++ LF+Q G + S ++ + T S G GF+
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171
Query: 74 TMSTVEEAEKVVEMFN 89
EAE+ ++ N
Sbjct: 172 RFDKRIEAEEAIKGLN 187
Score = 81 (33.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ ++ LF G +E +++ + T +S G+GFV S +A+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Score = 58 (25.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 85 VEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
V++ + T GFGF TM++ + AIA+L+G
Sbjct: 314 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 348
Score = 52 (23.4 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S G GF + +AI L+GQ
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 99 (39.9 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
ED K+F+G L ++ + L F+Q G V+ V+ T RS GFGF+T + V
Sbjct: 108 EDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTV 167
Query: 85 V 85
+
Sbjct: 168 M 168
Score = 48 (22.0 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIA 115
+TG GFGF T E+ + A++
Sbjct: 230 DTGRPRGFGFVTFDSEAAVEAALS 253
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L+V NL +D E+L F+ G + ++V+ E RS GFGFV S+ EEA K V
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 89 N 89
N
Sbjct: 354 N 354
Score = 99 (39.9 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+K
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 85 VEMFNRYE 92
V+ N E
Sbjct: 248 VDEMNGKE 255
Score = 49 (22.3 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 105 (42.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE-TDRSTGFGFVTMSTVEEAEKVV 85
+FV N D+D EKL LF++ G E +VI R+ T +S GFGFV T E A+K V
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVI--RDATGKSKGFGFVRYETHEAAQKAV 256
Score = 37 (18.1 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G GFG S + + A+ ++G+
Sbjct: 336 EVGQGKGFGVVCFSSFEEASKAVNEMNGR 364
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/81 (35%), Positives = 37/81 (45%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL D D L +F G V +VI T++ GFGFVTM+ EEA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 89 NRYETGCSHGFGFFTMSDESK 109
N Y G FF S K
Sbjct: 306 NGYRLGDKTLQVFFKTSKSHK 326
Score = 81 (33.6 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L ++ ++L LF+ G VE +++I + S G+GFV ++AE+ +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 89 N 89
N
Sbjct: 82 N 82
Score = 60 (26.2 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 274 KVIRDFNTNK--CK-GFGFVTMTNYEEAAMAIASLNG 307
Score = 49 (22.3 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDG 119
TG S G F S+ +AIA+ +G
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAIASFNG 169
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL D D L +F G V +VI T++ GFGFVTM+ EEA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 89 NRYETG 94
N Y G
Sbjct: 306 NGYRLG 311
Score = 81 (33.6 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L ++ ++L LF+ G VE +++I + S G+GFV ++AE+ +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 89 N 89
N
Sbjct: 82 N 82
Score = 60 (26.2 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
KV+ FN + C GFGF TM++ + AIA+L+G
Sbjct: 274 KVIRDFNTNK--CK-GFGFVTMTNYEEAAMAIASLNG 307
Score = 49 (22.3 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDG 119
TG S G F S+ +AIA+ +G
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAIASFNG 169
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 102 (41.0 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
K+FVG L Y L F G +E + VI R+T +S G+GFVTM+ AE+
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAER 67
Score = 33 (16.7 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 91 YETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
Y T G+G+ S A AA GQ
Sbjct: 207 YVTTAGTGYGYMQQPLASPAPAATAATFGQ 236
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 120 (47.3 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K+F+G L+ D++ + L F+Q G VE +EVI +ET + GFGFV + A+K V
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAV 159
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 101 (40.6 bits), Expect = 0.00018, P = 0.00018
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 194 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 251
Query: 85 VEMFN 89
V N
Sbjct: 252 VTEMN 256
Score = 96 (38.9 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N +VD E L LF+Q G +S + +S GFGFV+ E+A K
Sbjct: 91 EFTNVYIKNFGEEVDDESLKELFSQFGKT-LSVKVMRDPNGKSKGFGFVSYEKHEDANKA 149
Query: 85 VEMFNRYE 92
VE N E
Sbjct: 150 VEEMNGKE 157
Score = 50 (22.7 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 230 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 258
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 86 (35.3 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG + + E++ +LF +E +I + T+ G FV++ + EEA++ +E
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQ 63
Query: 88 FN 89
+
Sbjct: 64 LH 65
Score = 78 (32.5 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 18 VDYSEPPED---AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR-ETDRSTGFGFV 73
V Y++ ++ +KLFVG L + E++ LF GVVE ++ R S G GF+
Sbjct: 79 VKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVE--DICILRGPNSESKGCGFI 136
Query: 74 TMSTVEEAEKVVEMFN 89
E A + N
Sbjct: 137 KFDNRESALSAIATLN 152
Score = 59 (25.8 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TG S GFGF + + + N AI+ L GQ
Sbjct: 440 TGVSKGFGFVSYDNPASANLAISNLHGQ 467
Score = 38 (18.4 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 96 SHGFGFFTMSDESKLNDAIAALDG 119
S G GF + AIA L+G
Sbjct: 130 SKGCGFIKFDNRESALSAIATLNG 153
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 98 (39.6 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D ++L +F+ G +S + +T RS GFGFV EEA+K
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNT-LSVKVMMDDTGRSRGFGFVNYGNHEEAQKA 247
Query: 85 VEMFNRYE 92
V N E
Sbjct: 248 VSEMNGKE 255
Score = 49 (22.3 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 97 (39.2 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N +VD E L LF+Q G +S + + +S GFGFV+ E+A K
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKT-LSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 85 VEMFNRYE 92
VE N E
Sbjct: 248 VEEMNGKE 255
Score = 79 (32.9 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VG+L DV L F+ AG V V T RS G+ +V +AE+ ++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 MFN 89
N
Sbjct: 71 TMN 73
Score = 50 (22.7 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 97 (39.2 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N +VD E L LF+Q G +S + + +S GFGFV+ E+A K
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKT-LSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 85 VEMFNRYE 92
VE N E
Sbjct: 248 VEEMNGKE 255
Score = 79 (32.9 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VG+L DV L F+ AG V V T RS G+ +V +AE+ ++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 MFN 89
N
Sbjct: 71 TMN 73
Score = 50 (22.7 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 119 (46.9 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K+FVG + Y D L F++ G V +++I RET RS GF FVT ++ EEA ++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 87 M 87
+
Sbjct: 94 L 94
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 108 (43.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+V
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV-- 158
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 159 LQKYHTINGH 168
Score = 93 (37.8 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L + E L + + Q G ++++ + R+ + RS GFGFVT S++
Sbjct: 4 EKEQFRKLFIGGLSFQTTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMA 61
Query: 80 EAE 82
E +
Sbjct: 62 EVD 64
Score = 47 (21.6 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 85 VEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+E+ ++G GFGF T D ++ +
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 120 (47.3 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ YDV + + +F++AG V +++ RET + G+GF+ ++ AE +
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 89 NRYE 92
N YE
Sbjct: 80 NGYE 83
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 25 EDAKLFVGNLRYDVDSEKLA-HLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
E+ KLFVG L ++ D + L H+ + + E+ ++ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNSDKQALEDHISSFRPISEVV-IVKDRETQRSRGFGFITFTNPEHASN 62
Query: 84 VVEMFN 89
V+ N
Sbjct: 63 VMRAMN 68
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L+VG++ Y+ + L LF+ AG V +I ET RS G G+V M T EEA++ +E
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L+VG++ Y+ + L LF+ AG V +I ET RS G G+V M T EEA++ +E
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 101 (40.6 bits), Expect = 0.00021, P = 0.00021
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 96 (38.9 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N +VD E L LF+Q G +S + +S GFGFV+ E+A K
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKT-LSVKVMRDPNGKSKGFGFVSYEKHEDANKA 247
Query: 85 VEMFNRYE 92
VE N E
Sbjct: 248 VEEMNGKE 255
Score = 79 (32.9 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VG+L DV L F+ AG V V T RS G+ +V +AE+ ++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 MFN 89
N
Sbjct: 71 TMN 73
Score = 50 (22.7 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 98 (39.6 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+ L ++ E L F Q G + V+ T RS GFGFV +TVEE
Sbjct: 9 EPEQLWKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEV 68
Query: 82 E 82
+
Sbjct: 69 D 69
Score = 40 (19.1 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T + ++ +
Sbjct: 130 EVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIV 161
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 101 (40.6 bits), Expect = 0.00025, P = 0.00025
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 332 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 389
Query: 85 VEMFN 89
V N
Sbjct: 390 VTEMN 394
Score = 97 (39.2 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N +VD E L LF+Q G +S + + +S GFGFV+ E+A K
Sbjct: 229 EFTNVYIKNFGEEVDDESLKELFSQFGKT-LSVKVMRDPSGKSKGFGFVSYEKHEDANKA 287
Query: 85 VEMFNRYE 92
VE N E
Sbjct: 288 VEEMNGKE 295
Score = 50 (22.7 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 368 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 396
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 293 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKA 350
Query: 85 VEMFN 89
V N
Sbjct: 351 VTEMN 355
Score = 96 (38.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D ++L LF++ G +S + T +S GFGFV+ E+A K
Sbjct: 190 EFTNVYIKNFGDDMDDQRLKELFDKYGKT-LSVKVMTDPTGKSRGFGFVSYEKHEDANKA 248
Query: 85 VEMFNRYE 92
VE N E
Sbjct: 249 VEEMNGTE 256
Score = 50 (22.7 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 329 EEGRSKGFGFVCFSSPEEATKAVTEMNGR 357
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 120 (47.3 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 88 FNRYE 92
N +E
Sbjct: 154 LNGFE 158
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 107 (42.7 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T S GFGFVT S V
Sbjct: 28 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCV 87
Query: 79 EEAE 82
EE +
Sbjct: 88 EEVD 91
Score = 32 (16.3 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 98 GFGFFTMSDESKLNDAI 114
GF F T D+ ++ +
Sbjct: 167 GFAFVTFDDQDTVDKIV 183
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 96 (38.9 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N +VD E L LF+Q G +S + +S GFGFV+ E+A K
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKT-LSVKVMRDPNGKSKGFGFVSYEKHEDANKA 247
Query: 85 VEMFNRYE 92
VE N E
Sbjct: 248 VEEMNGKE 255
Score = 79 (32.9 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VG+L DV L F+ AG V V T RS G+ +V +AE+ ++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 MFN 89
N
Sbjct: 71 TMN 73
Score = 50 (22.7 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 107 (42.7 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F + G + V+ +T S GFGFVT S V
Sbjct: 28 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCV 87
Query: 79 EEAE 82
EE +
Sbjct: 88 EEVD 91
Score = 32 (16.3 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 98 GFGFFTMSDESKLNDAI 114
GF F T D+ ++ +
Sbjct: 167 GFAFVTFDDQDTVDKIV 183
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 119 (46.9 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+ PP+ KLF+G L +D E+L + F+Q G V + VI T S GFGFVT +++
Sbjct: 63 HDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIF 122
Query: 80 EAEKVV 85
AE +
Sbjct: 123 SAESAM 128
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLF+G L + + L F++ G +E + V+ R+T+RS GFGFV ++ EA+ +
Sbjct: 2 AKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMG 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 AMNNQE 67
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 120 (47.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395
Query: 88 FNRYE 92
N +E
Sbjct: 396 LNGFE 400
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 101 (40.6 bits), Expect = 0.00020, P = 0.00020
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 221 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 278
Query: 85 VEMFN 89
V N
Sbjct: 279 VTEMN 283
Score = 94 (38.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N +VD E L LF+Q G +S + + +S GFGFV+ E+A K
Sbjct: 118 EFTNVYIKNFGEEVDDENLRELFSQFGKT-LSVKVMRDCSGKSKGFGFVSYEKHEDANKA 176
Query: 85 VEMFNRYE 92
VE N E
Sbjct: 177 VEEMNGKE 184
Score = 50 (22.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 257 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 285
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG L + D L F G V + VI RET RS GFGFV+ S + A ++
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 115 (45.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 32/97 (32%), Positives = 46/97 (47%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L Y + L F Q G +E + VI R T +S G+GFVTM AE+ +
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALD-GQARI 123
N G + + + N +AAL GQ ++
Sbjct: 96 PNPIIDGRKANVNLAYLGAKPRTNVQLAALAAGQVQL 132
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 115 (45.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 32/97 (32%), Positives = 46/97 (47%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L Y + L F Q G +E + VI R T +S G+GFVTM AE+ +
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALD-GQARI 123
N G + + + N +AAL GQ ++
Sbjct: 96 PNPIIDGRKANVNLAYLGAKPRTNVQLAALAAGQVQL 132
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 94 (38.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N +VD E L LF+Q G +S + + +S GFGFV+ E+A K
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKT-LSVKVMRDCSGKSKGFGFVSYEKHEDANKA 247
Query: 85 VEMFNRYE 92
VE N E
Sbjct: 248 VEEMNGKE 255
Score = 79 (32.9 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VG+L DV L F+ AG V V T RS G+ +V +AE+ ++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 MFN 89
N
Sbjct: 71 TMN 73
Score = 50 (22.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 47 (21.6 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
+G S GFGF + N A+ ++G+
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGK 254
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 95 (38.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D +L +F++ G +S + T RS GFGFV EEA+K
Sbjct: 189 EFTNVYIKNFGDDMDDNRLREIFSRFGKT-LSVKVMMDHTGRSKGFGFVNFEKHEEAQKA 247
Query: 85 VEMFNRYE 92
V N E
Sbjct: 248 VADMNGKE 255
Score = 49 (22.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 100 (40.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLF+G + +D + E+L F+ G V + ++ R T R+ GFGFV + AE V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 85 V 85
+
Sbjct: 64 I 64
Score = 41 (19.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 84 VVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
VV M++ + T GFGF T E + +
Sbjct: 137 VVVMYD-HNTQRPRGFGFITYDSEEAVEKVL 166
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 101 (40.6 bits), Expect = 0.00023, P = 0.00023
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L++ NL +D EKL F+ G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 94 (38.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N +VD E L LF+Q G +S + + +S GFGFV+ E+A K
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKT-LSVKVMRDCSGKSKGFGFVSYEKHEDANKA 247
Query: 85 VEMFNRYE 92
VE N E
Sbjct: 248 VEEMNGKE 255
Score = 79 (32.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VG+L DV L F+ AG V V T RS G+ +V +AE+ ++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 MFN 89
N
Sbjct: 71 TMN 73
Score = 50 (22.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 47 (21.6 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
+G S GFGF + N A+ ++G+
Sbjct: 227 SGKSKGFGFVSYEKHEDANKAVEEMNGK 254
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 103 (41.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
++ LFV NL + + L + F+ G ++ + V+ ET + G+GFVT S +E+A++
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAA 63
Query: 86 -EMFNR 90
E+ N+
Sbjct: 64 KELKNK 69
Score = 41 (19.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 98 GFGFFTMSDESKLNDAIAALDG 119
GF F M D +A+ +L+G
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNG 170
Score = 32 (16.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 94 GCSHGFGFFTMSDESKLNDAIAALDGQ 120
G S GFGF A+ L+G+
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGR 562
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 93 (37.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR-STGFGFVTMSTVEE 80
EP + KLF+G L + E L F Q G +++ + ++ S GFGFVT +TVEE
Sbjct: 9 EPEQLWKLFIGGLSFKTTDESLRSHFEQWGT--LTDCVMRDPNNKISRGFGFVTYTTVEE 66
Query: 81 AE 82
+
Sbjct: 67 LD 68
Score = 42 (19.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 83 KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+V+E+ +G GF F T D ++ +
Sbjct: 126 EVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIV 157
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV-VE 86
+LFV L +EKL F G + + VI R++ RS GFGFVT +T+E+AEK E
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 87 MFNRYETG 94
M ++ G
Sbjct: 95 MNAKFLDG 102
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 111 (44.1 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KLFVG ++ D + L F + G ++ E+I R++ R GFGFVT + +K+V
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIV 158
Score = 91 (37.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVE 79
E + KLF+G L + E L + Q G E+++ + R+ + RS G GFVT S+V
Sbjct: 4 EAEQIRKLFIGGLSFQTTEESLRKYYQQWG--ELTDCVVLRDFASQRSRGCGFVTFSSVT 61
Query: 80 EAE 82
E +
Sbjct: 62 EVD 64
Score = 45 (20.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 85 VEMFNRYETGCSHGFGFFTMSD 106
+E+ ++G GFGF T D
Sbjct: 129 IEIITDRQSGRKRGFGFVTFDD 150
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 93 (37.8 bits), Expect = 0.00030, P = 0.00030
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ + K+FVG + ++ +L F + GVV +I+ E R GFGF+T +
Sbjct: 85 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 144
Query: 81 AEKVVEM 87
++ V M
Sbjct: 145 VDQAVNM 151
Score = 82 (33.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
E KLFVG L + E L F+Q G V ++ + T++S GFGFV
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
Score = 49 (22.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 98 GFGFFTMSDESKLNDAI 114
GFGF T DE ++ A+
Sbjct: 133 GFGFITFEDEQSVDQAV 149
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 94 (38.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D ++L +F+ G +S + ++ RS GFGFV EEA+K
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNT-LSVKVMMDDSGRSRGFGFVNYGNHEEAQKA 247
Query: 85 VEMFNRYE 92
V N E
Sbjct: 248 VSEMNGKE 255
Score = 49 (22.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 95 (38.5 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ E +++ N D+D E+L +F++ G +S + + +S GFGFV+ + E
Sbjct: 184 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKT-LSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 81 AEKVVEMFN 89
A+K VE N
Sbjct: 243 AKKAVEEMN 251
Score = 95 (38.5 bits), Expect = 0.00046, P = 0.00046
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ KL++ NL +D EKL + F+ G IS V +E +S GFG + S+ E+A K
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFG--SISRVKVMQEEGQSKGFGLICFSSPEDATKA 348
Query: 85 VEMFN 89
+ N
Sbjct: 349 MTEMN 353
Score = 80 (33.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VG+L DV + L F+ G V + + T RS G+ +V + +A+K ++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 87 MFN 89
N
Sbjct: 70 TMN 72
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
+G S GFGF + A+ ++G+
Sbjct: 226 SGKSKGFGFVSFDSHEAAKKAVEEMNGR 253
Score = 42 (19.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124
E G S GFG S A+ ++G RIL
Sbjct: 327 EEGQSKGFGLICFSSPEDATKAMTEMNG--RIL 357
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 119 (46.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ +++ ET RS G+GF+T S E A+K +E
Sbjct: 247 RLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 306
Query: 88 FNRYE 92
N +E
Sbjct: 307 LNGFE 311
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG ++ D + L F + G ++ E+I R++ + GFGFVT + +K+ M
Sbjct: 113 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKI--M 170
Query: 88 FNRYETGCSH 97
+Y H
Sbjct: 171 LQKYHAINGH 180
Score = 91 (37.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR--ETDRSTGFGFVTMSTVEEAE 82
KLF+G L + E L + + Q G E+++ + R + +S GFGFVT S+V E +
Sbjct: 22 KLFIGGLSSETTEESLKNYYQQWG--ELTDCVVIRGLASQKSRGFGFVTFSSVAEVD 76
Score = 45 (20.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 85 VEMFNRYETGCSHGFGFFTMSD 106
+E+ ++G GFGF T D
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDD 162
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 115 (45.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 33/104 (31%), Positives = 46/104 (44%)
Query: 21 SEPPEDA-KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
S+ EDA K+FVG L +D + L F + G V + T RS GFGF+
Sbjct: 75 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 134
Query: 80 EAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQARI 123
EKV+E+ R E G G + K +A G +R+
Sbjct: 135 SVEKVIEIKQRREYGLECGPKEIAKRQKDKKKKKLAT--GSSRV 176
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 95 (38.5 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+DSEKL ++F + G +S + E RS GFGFV +A +
Sbjct: 189 EFTNVYIKNFGEDIDSEKLKNIFTEFGKT-LSVCVMTDERGRSRGFGFVNFVNHGDARRA 247
Query: 85 VEMFNRYE 92
V N E
Sbjct: 248 VTEMNGKE 255
Score = 47 (21.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 94 GCSHGFGFFTMSDESKLNDAIAALDGQ 120
G S GFGF S + A+ ++G+
Sbjct: 330 GHSRGFGFVCFSSPEEATKAVTEMNGR 356
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 98 (39.6 bits), Expect = 0.00026, P = 0.00026
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG + VD ++ F Q G ++ +++ T RS GFGFVT + + + ++
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 88 FNRYE 92
NR E
Sbjct: 191 GNRIE 195
Score = 86 (35.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 28 KLFVGNL-RYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K+FVG L R +E L H F + G + S ++ R+T + GFGFVT + +KV++
Sbjct: 43 KIFVGGLARETTSAEFLKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Score = 52 (23.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 86 EMFNRYETGCSHGFGFFTMSDESKLNDAIA 115
++ + TG S GFGF T E ++ +A
Sbjct: 160 QIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 96 (38.9 bits), Expect = 0.00051, P = 0.00051
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
E + AK+FVG + D E+ + FNQ G V + ++ ++T R GFGFVT
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV 301
Query: 82 E 82
E
Sbjct: 302 E 302
Score = 92 (37.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
ED K+F+G L ++ + L F Q G V V+ T RS GFGF+T + +V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 85 V 85
+
Sbjct: 221 M 221
Score = 47 (21.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126
+TG GFGF T +ES A+ A Q I H
Sbjct: 283 DTGRPRGFGFVTYENES----AVEATMSQPYITIH 313
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 97 (39.2 bits), Expect = 0.00058, P = 0.00058
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ L+V NL +D E+L F G + ++V+ E RS GFGFV S+ EEA K
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 85 VEMFN 89
V N
Sbjct: 350 VTEMN 354
Score = 93 (37.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L F Q G +S + + +S GFGFV+ E+A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAA-LSVKVMTDDHGKSRGFGFVSFERHEDAQKA 247
Query: 85 VEMFN 89
V+ N
Sbjct: 248 VDDMN 252
Score = 49 (22.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G S GFGF S + A+ ++G+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 100 (40.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD-RSTGFGFVTMSTVEEAEKVV 85
+FV N+ D+D EKL LF + G E +VI R+ +S GFGFV T E A+K V
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVI--RDASGKSKGFGFVRYETHEAAQKAV 256
Score = 93 (37.8 bits), Expect = 0.00079, P = 0.00079
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S PP +++ NL ++ EKL F+ G + ++V+ E + GFG V S+ EE
Sbjct: 297 SRPP-GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEE 353
Query: 81 AEKVVEMFN 89
A K V+ N
Sbjct: 354 ATKAVDEMN 362
Score = 36 (17.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
E G GFG S + A+ ++G+
Sbjct: 336 EVGQGKGFGVVCFSSFEEATKAVDEMNGR 364
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 117 (46.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 101 (40.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 18 VDYSEPPED-AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
+D S+ ED K+FVG L +D + L F + G V + T RS GFGFV
Sbjct: 44 IDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFK 103
Query: 77 TVEEAEKVV 85
E EKV+
Sbjct: 104 EAESVEKVI 112
Score = 98 (39.6 bits), Expect = 0.00017, P = 0.00017
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K+FVG L D EK+ F+ G VE E+ +T++ GF F+T E +K++E
Sbjct: 140 KIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
Score = 32 (16.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 80 EAEKVVEMFNRYETGCSHGFGFFTMSDE 107
E E + E+ +T GF F T +E
Sbjct: 164 EVESI-ELPMENKTNKRRGFCFITFKEE 190
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 98 (39.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KLF+G + +D D E+L F+ G V + ++ R T R+ GFGF+ + +E+V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Score = 94 (38.1 bits), Expect = 0.00080, P = 0.00080
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K+FVG L + E+ + F+Q G + V++ T R GFGF+T + + ++V+
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 40 (19.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 84 VVEMFNRYETGCSHGFGFFTM-SDES 108
VV M++ + T GFGF T SD++
Sbjct: 139 VVVMYD-HNTQRPRGFGFITFDSDDA 163
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 106 (42.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L + E + F Q G VE + ++F + T+R GFGFVT + EKV E+
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Score = 92 (37.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVEEAE 82
+ K+F+G L + + L F++ G EI E + R+ T RS GFGFVT + +
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFG--EIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 83 KVV 85
KV+
Sbjct: 77 KVL 79
Score = 42 (19.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 80 EAEKVVEMFNRYETGCSHGFGFFTMSDE 107
+ E + MF++ T GFGF T +E
Sbjct: 135 KVEDAMLMFDK-TTNRHRGFGFVTFENE 161
WARNING: HSPs involving 411 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 128 111 0.00091 102 3 11 22 0.45 30
29 0.42 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 661
No. of states in DFA: 527 (56 KB)
Total size of DFA: 105 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.89u 0.10s 12.99t Elapsed: 00:00:00
Total cpu time: 12.92u 0.10s 13.02t Elapsed: 00:00:00
Start: Mon May 20 20:41:44 2013 End: Mon May 20 20:41:44 2013
WARNINGS ISSUED: 2