BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040490
(128 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/78 (79%), Positives = 71/78 (91%)
Query: 15 GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74
GSE YSEPPE+AKLFVGNL YD+DSEKLA LF++AGVVEI+EVI+ RETD+S GFGF+T
Sbjct: 81 GSEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFIT 140
Query: 75 MSTVEEAEKVVEMFNRYE 92
MSTVEEAEK VEMFNRY+
Sbjct: 141 MSTVEEAEKAVEMFNRYD 158
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 35/123 (28%)
Query: 3 GGFIGGEESFGDGSEVDYSEPPE----DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEV 58
G F+ ++ GS + PP+ +++VGNL + VD +L +F++ G V + V
Sbjct: 161 GRFLTVNKAAPRGSRPE--RPPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARV 218
Query: 59 IFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALD 118
++ R+T RS GFGFVTMS+ E++LNDAIAALD
Sbjct: 219 VYDRDTQRSRGFGFVTMSS-----------------------------ETELNDAIAALD 249
Query: 119 GQA 121
GQ+
Sbjct: 250 GQS 252
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 68/73 (93%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
YSEPPE+AKLFVGNL YD+DSEKLA LF++AGVVEI+EVI+ RETD+S GFGF+TMSTVE
Sbjct: 126 YSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVE 185
Query: 80 EAEKVVEMFNRYE 92
EAEK VEMFNRY+
Sbjct: 186 EAEKAVEMFNRYD 198
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD +L +F++ G V + V++ R+T RS GFGFVTMS+
Sbjct: 228 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSS---------- 277
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E++LNDAIAALDGQ+
Sbjct: 278 -------------------ETELNDAIAALDGQS 292
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
YSEPPE+AK+FVGNL YDVDSE+LA LF QAGVVEI+EVI+ RETDRS GFGFV+MSTVE
Sbjct: 141 YSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVE 200
Query: 80 EAEKVVEMFNRYE 92
EAEK V+MF+RYE
Sbjct: 201 EAEKAVDMFHRYE 213
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVDS +L +F++ G V + V+F RET RS GFGFVTMS+
Sbjct: 243 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSS---------- 292
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
+++L DAIAA DGQ
Sbjct: 293 -------------------QTELEDAIAATDGQ 306
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
YSEPPE+AK+FVGNL YDVDSE+LA LF QAGVVEI+EVI+ RETDRS GFGFV+MSTVE
Sbjct: 120 YSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVE 179
Query: 80 EAEKVVEMFNRYE 92
EAEK V+MF+RYE
Sbjct: 180 EAEKAVDMFHRYE 192
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVDS +L +F++ G V + V+F RET RS GFGFVTMS+
Sbjct: 222 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSS---------- 271
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
+++L DAIAA DGQ
Sbjct: 272 -------------------QTELEDAIAATDGQ 285
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
YSEPPE+AK+FVGNL YDVDSE+LA LF QAGVVEI+EVI+ RETDRS GFGFV+MSTVE
Sbjct: 936 YSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVE 995
Query: 80 EAEKVVEMFNRYE 92
EAEK V+MF+RYE
Sbjct: 996 EAEKAVDMFHRYE 1008
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVDS +L +F++ G V + V+F RET RS GFGFVTMS+
Sbjct: 1038 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSS---------- 1087
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
+++L DAIAA DGQ
Sbjct: 1088 -------------------QTELEDAIAATDGQ 1101
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 77/106 (72%), Gaps = 14/106 (13%)
Query: 1 EIGGFIGGEESFGDG--------------SEVDYSEPPEDAKLFVGNLRYDVDSEKLAHL 46
++GG G ++FGD SE +SEPPE+AKLFVGNL YDVDSE+LA +
Sbjct: 88 QVGGATWGTQNFGDSEPQVSGVGNEDEEESEQGFSEPPEEAKLFVGNLPYDVDSERLAQI 147
Query: 47 FNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
F+ AGVVEI+EVI+ RETDRS GFGFVTMSTVEEAEK VEM N ++
Sbjct: 148 FDGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMLNGFD 193
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 33/102 (32%)
Query: 23 PPED----AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
PP + +++VGNL +DVD+ +L +F++ G V + V+ RET RS GFGFV+M++
Sbjct: 214 PPREFEPSCRVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMAS- 272
Query: 79 EEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
ES++NDAIAALDGQ
Sbjct: 273 ----------------------------ESEMNDAIAALDGQ 286
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 66/73 (90%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
Y EPPE+AK++VGNL YD+DSE+LA LF QAG+VE+SEVI+ RETDRS GFGFVTMSTVE
Sbjct: 136 YVEPPEEAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVE 195
Query: 80 EAEKVVEMFNRYE 92
EAEK VEMF+RY+
Sbjct: 196 EAEKAVEMFHRYD 208
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD +L LF++ G V + V++ RET RS GFGFVTM+T EE
Sbjct: 238 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEE------- 290
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
L+DAIAALDGQ+
Sbjct: 291 ----------------------LDDAIAALDGQS 302
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 71/88 (80%), Gaps = 5/88 (5%)
Query: 6 IGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD 65
+ EE G+ Y EPPE+AK++VGNL YDVDSE+LA LF QAGVVE+SEVI+ RETD
Sbjct: 100 VAAEEEVGE-----YVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETD 154
Query: 66 RSTGFGFVTMSTVEEAEKVVEMFNRYET 93
+S GFGFVTMST+EEAEK VEMF+RY+
Sbjct: 155 QSRGFGFVTMSTIEEAEKAVEMFHRYDV 182
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 33/103 (32%)
Query: 23 PPEDA----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
PP D+ +++VGNL + VD +L LF++ G V ++V++ R+T RS GFGFVTM++
Sbjct: 202 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQ 261
Query: 79 EEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
EE L+DAIAALDGQ+
Sbjct: 262 EE-----------------------------LDDAIAALDGQS 275
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 71/88 (80%), Gaps = 5/88 (5%)
Query: 6 IGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD 65
+ EE G+ Y EPPE+AK++VGNL YDVDSE+LA LF QAGVVE+SEVI+ RETD
Sbjct: 100 VAAEEEVGE-----YVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETD 154
Query: 66 RSTGFGFVTMSTVEEAEKVVEMFNRYET 93
+S GFGFVTMST+EEAEK VEMF+RY+
Sbjct: 155 QSRGFGFVTMSTIEEAEKAVEMFHRYDV 182
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 33/103 (32%)
Query: 23 PPEDA----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
PP D+ +++VGNL + VD +L LF++ G V + V++ R+T RS GFGFVTM++
Sbjct: 202 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 261
Query: 79 EEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
EE L+DAIAALDGQ+
Sbjct: 262 EE-----------------------------LDDAIAALDGQS 275
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 71/90 (78%), Gaps = 5/90 (5%)
Query: 8 GEESFGDG-----SEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR 62
GEES GDG E Y PPE+AKLFVGNL YDVD + LA LF+QAG VE++EVI+ R
Sbjct: 97 GEESGGDGFVEGGEEDSYPLPPEEAKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNR 156
Query: 63 ETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
ETD+S GFGFVTMSTVEEAEK VEMFNRY+
Sbjct: 157 ETDQSRGFGFVTMSTVEEAEKAVEMFNRYD 186
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD +L +F++ G V + V++ RET RS GFGFVTMST
Sbjct: 216 RMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMST---------- 265
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
+++L+DAIAALDGQ+
Sbjct: 266 -------------------QTELDDAIAALDGQS 280
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 66/75 (88%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
+Y EPPE+AK++VGNL YDVDSE+LA LF QAGVVE++EVI+ RETDRS GFGFVTMSTV
Sbjct: 108 EYVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYNRETDRSRGFGFVTMSTV 167
Query: 79 EEAEKVVEMFNRYET 93
EEA+K VEM +RY+
Sbjct: 168 EEADKAVEMLHRYDV 182
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 35/111 (31%)
Query: 15 GSEVDYSEPPEDA----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
GS VD PP + +++VGNL + VD KL +F++ G V + V++ RET RS GF
Sbjct: 196 GSRVD--RPPRQSGPSLRIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGF 253
Query: 71 GFVTMSTVEEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
GFVTM+T +E L+DAIAALDGQ+
Sbjct: 254 GFVTMATQDE-----------------------------LDDAIAALDGQS 275
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 69/90 (76%)
Query: 3 GGFIGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR 62
G E + D E ++EPPE+AKLFVGNL YDVDS+KLA LF QAG VEI+EVI+ R
Sbjct: 100 AGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNR 159
Query: 63 ETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
ETD+S GFGFVTMSTVEEAE VE F+RY+
Sbjct: 160 ETDQSRGFGFVTMSTVEEAENAVEKFSRYD 189
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 29/93 (31%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL +DVD+ +L +F++ G V + V++ RET RS GFGFV
Sbjct: 222 IYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFV--------------- 266
Query: 89 NRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
TMSDE+++ DA+AALDGQ+
Sbjct: 267 --------------TMSDETEMKDAVAALDGQS 285
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 65/72 (90%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EPPE+AK++VGNL YD+DSE+LA LF QAG+VE+SEVI+ RETDRS GFGFVTMSTVEEA
Sbjct: 2 EPPEEAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEA 61
Query: 82 EKVVEMFNRYET 93
EK VEMF+RY+
Sbjct: 62 EKAVEMFHRYDV 73
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD +L LF++ G V + V++ RET RS GFGFVTM+T EE
Sbjct: 102 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEE------- 154
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
L+DAIAALDGQ+
Sbjct: 155 ----------------------LDDAIAALDGQS 166
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 65/72 (90%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PPE+AK++VGNL YD+DSE+LA LF QAGVVE+SEVI+ RETD+S GFGFVTMST+EEAE
Sbjct: 113 PPEEAKVYVGNLPYDIDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAE 172
Query: 83 KVVEMFNRYETG 94
K VEMF+RY+ G
Sbjct: 173 KAVEMFHRYDVG 184
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD +L LF++ G V + V++ RET RS GFGFVTM++ EE
Sbjct: 213 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMASQEE------- 265
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
L+DAIAALDGQ+
Sbjct: 266 ----------------------LDDAIAALDGQS 277
>gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
Length = 292
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 71/84 (84%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
+ S G GSE +SEP ED KL+VGNL +DVDSEKLA++F+ AGVVEI+EVI+ RETDRS
Sbjct: 94 QPSSGFGSEDGFSEPSEDVKLYVGNLPFDVDSEKLANMFDAAGVVEIAEVIYNRETDRSR 153
Query: 69 GFGFVTMSTVEEAEKVVEMFNRYE 92
GFGFVTMSTVEEA+K VEMF+ YE
Sbjct: 154 GFGFVTMSTVEEADKAVEMFHSYE 177
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 30 FVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
+VGNL +DVD+++L L ++ G V + V+ RET+RS GFGFVTM++
Sbjct: 210 YVGNLPWDVDNDRLEQLSSEHGKVLSARVVSDRETERSRGFGFVTMAS 257
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 4 GFIGG-----EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEV 58
G IGG +ESF + EPPE+AKLFVGNL YDVDS+ LA LF QAG VEISEV
Sbjct: 85 GSIGGTSVTVDESFDTEDGGKFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEV 144
Query: 59 IFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
I+ R+TD+S GFGFVTMSTVEEA+K VE FNRYE
Sbjct: 145 IYNRDTDQSRGFGFVTMSTVEEAKKAVEKFNRYE 178
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+++L +F++ G V + V++ RET RS GFGFV
Sbjct: 208 RIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFV-------------- 253
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TMS+E+++NDAIAALDGQ
Sbjct: 254 ---------------TMSNENEVNDAIAALDGQ 271
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 68/90 (75%)
Query: 3 GGFIGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR 62
G E + D + + EPPE+AKLFVGNL YDVDS+KLA LF QAG VEI+EVI+ R
Sbjct: 85 AGLESWEPNGEDAGDESFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNR 144
Query: 63 ETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
ETD+S GFGFVTMSTVEEAE VE FNRY+
Sbjct: 145 ETDQSRGFGFVTMSTVEEAESAVEKFNRYD 174
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 29/93 (31%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL +DVD+ +L +F++ G V + V++ RE+ RS GFGFV
Sbjct: 207 IYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFV--------------- 251
Query: 89 NRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
TMSDE+++NDA+AALDG++
Sbjct: 252 --------------TMSDETEMNDAVAALDGES 270
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 65/73 (89%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+SEPPE+AKLFVGNL YDVDSEKLA +F+ AGVVEI+EVI+ RETDRS GFGFVTMSTVE
Sbjct: 48 FSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVE 107
Query: 80 EAEKVVEMFNRYE 92
EAEK VE+ N Y+
Sbjct: 108 EAEKAVELLNGYD 120
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 29/94 (30%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+++VGNL +DVD+ +L LF++ G V + V+ RET RS GFGFVTMS+
Sbjct: 149 CRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSS--------- 199
Query: 87 MFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
ES++NDAIAALDGQ
Sbjct: 200 --------------------ESEVNDAIAALDGQ 213
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 64/70 (91%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PPE+AK++VGNL YDVDSE+LA LF QAGVVE+SEVI+ RETD+S GFGFVTMST+EEAE
Sbjct: 111 PPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAE 170
Query: 83 KVVEMFNRYE 92
K VEMF+RY+
Sbjct: 171 KAVEMFHRYD 180
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 33/104 (31%)
Query: 22 EPPEDA----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
PP D+ +++VGNL + VD +L LF++ G V + V++ R+T RS GFGFVTM++
Sbjct: 200 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 259
Query: 78 VEEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
+ +L+DAIAALDGQ+
Sbjct: 260 -----------------------------QPELDDAIAALDGQS 274
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 65/73 (89%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+SEPPE+AKLFVGNL YDVDSEKLA +F+ AGVVEI+EVI+ RETDRS GFGFVTMSTVE
Sbjct: 41 FSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVE 100
Query: 80 EAEKVVEMFNRYE 92
EAEK VE+ N Y+
Sbjct: 101 EAEKAVELLNGYD 113
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V+ RET RS GFGFVTMS+
Sbjct: 143 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSS---------- 192
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
ES++NDAIAALDGQ
Sbjct: 193 -------------------ESEVNDAIAALDGQ 206
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
Y EP EDAKLFVGNL YD+DSEKLA LF +AG VEI+EVI+ RETDRS GFGFVTMSTVE
Sbjct: 145 YEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVE 204
Query: 80 EAEKVVEMFNRYE 92
EAEK V+ FNRY+
Sbjct: 205 EAEKAVDTFNRYD 217
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V++ R++ RS GFGFV
Sbjct: 247 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFV-------------- 292
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
TM+DE+ +NDAIAALDGQ+
Sbjct: 293 ---------------TMADETGMNDAIAALDGQS 311
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 4 GFIGG-----EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEV 58
G IGG +ESF V + EPPE+AKLFVGNL YDVDS+ LA LF QAG VEISEV
Sbjct: 85 GSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEV 144
Query: 59 IFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
I+ R+TD+S GFGFVTMSTVEEAEK VE FN +E
Sbjct: 145 IYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFE 178
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVDS +L LF++ G V + V+ RET RS GFGFV
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFV-------------- 253
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
MS+E+++N AIAALDGQ
Sbjct: 254 ---------------QMSNENEVNVAIAALDGQ 271
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 65/71 (91%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PPE+AK++VGNL YDVDSE+LA LF+QAGVVE++EVI+ RETD+S GFGFVTMSTVEEAE
Sbjct: 121 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAE 180
Query: 83 KVVEMFNRYET 93
K VEMF+RY+
Sbjct: 181 KAVEMFHRYDV 191
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 35/111 (31%)
Query: 15 GSEVDYSEPPEDA----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
GS VD PP + +++VGNL + VD +L LF++ G V + V++ RET RS GF
Sbjct: 205 GSRVD--RPPRQSGPSLRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGF 262
Query: 71 GFVTMSTVEEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
GFVTM++ +E L+DAIAALDGQ+
Sbjct: 263 GFVTMASQDE-----------------------------LDDAIAALDGQS 284
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
Y EP EDAKLFVGNL YD+DSEKLA LF +AG VEI+EVI+ RETDRS GFGFVTMSTVE
Sbjct: 139 YEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVE 198
Query: 80 EAEKVVEMFNRYE 92
EAEK V+ FNRY+
Sbjct: 199 EAEKAVDTFNRYD 211
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V++ R++ RS GFGFV
Sbjct: 241 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFV-------------- 286
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
TM+DE+ +NDAIAALDGQ+
Sbjct: 287 ---------------TMADETGMNDAIAALDGQS 305
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 65/73 (89%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+ EPPEDAKLFVGNL +DVDSEKLA +F AGVVEI+EVI+ RETDRS GFGFVTMSTVE
Sbjct: 104 FQEPPEDAKLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVE 163
Query: 80 EAEKVVEMFNRYE 92
EAEK VE+++++E
Sbjct: 164 EAEKAVELYHKFE 176
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD +L +F++ G V + V+ RET RS GF FVTM++
Sbjct: 206 RVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMAS---------- 255
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
ES++N+AI ALDGQ
Sbjct: 256 -------------------ESEMNEAIGALDGQ 269
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/78 (71%), Positives = 66/78 (84%)
Query: 15 GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74
G +Y EP EDAKLFVGNL YD+DSE LA LF QAGVVEI+EVI+ RETDRS GFGFVT
Sbjct: 85 GETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVT 144
Query: 75 MSTVEEAEKVVEMFNRYE 92
MSTVEEA+K VE++++Y+
Sbjct: 145 MSTVEEADKAVELYSQYD 162
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGN+ +D+D +L +F++ G V + V+F RE+ RS GFGFVTMS+
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSS---------- 241
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E+++++AIA LDGQ
Sbjct: 242 -------------------EAEMSEAIANLDGQT 256
>gi|242079661|ref|XP_002444599.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
gi|241940949|gb|EES14094.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
Length = 292
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 70/82 (85%), Gaps = 2/82 (2%)
Query: 13 GDGSEVDYS--EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
GD E +Y+ EPPE+AK++VGNL YD+DSE LA LF+QAGVVE++EVI+ RET +S GF
Sbjct: 98 GDEGEGEYAAVEPPEEAKVYVGNLPYDIDSEGLAQLFDQAGVVEVAEVIYNRETGQSRGF 157
Query: 71 GFVTMSTVEEAEKVVEMFNRYE 92
GFVTMST+EEA+K +EMFNRY+
Sbjct: 158 GFVTMSTIEEADKAIEMFNRYD 179
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + VD +L LF++ G V + V++ RE+ RS GFGFVTM + EE
Sbjct: 209 RAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEE------- 261
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
L+DAI+ALDGQ
Sbjct: 262 ----------------------LDDAISALDGQ 272
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 63/73 (86%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+ EPPE+AK+FVGNL YDVDSEKLA LF QAG VEI+EVI+ RETD S GFGFVTMSTVE
Sbjct: 142 FVEPPEEAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVE 201
Query: 80 EAEKVVEMFNRYE 92
E+EK VEM +RY+
Sbjct: 202 ESEKAVEMLHRYD 214
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVDS +L +F++ G V + V+F RET+RS GFGFVTMST
Sbjct: 244 RIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMST---------- 293
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
ES+LNDAIAALDGQ
Sbjct: 294 -------------------ESELNDAIAALDGQ 307
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 64/71 (90%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EPPE+AK++VGNL YDVDSE LA +F+QAGVVE++EVI+ RET +S GFGFVTMSTVEEA
Sbjct: 103 EPPEEAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEA 162
Query: 82 EKVVEMFNRYE 92
+K +EMFNRY+
Sbjct: 163 DKAIEMFNRYD 173
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + VD +L LF++ G V ++V++ RET RS GFGFV+M + EE
Sbjct: 203 RAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEE------- 255
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LNDAI+ALDGQ
Sbjct: 256 ----------------------LNDAISALDGQ 266
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 65/72 (90%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+EPPE+AK++VGNL YDVDSE+LA LF+QAGVVE++EVI+ RE+ +S GFGFVTMST+EE
Sbjct: 99 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 158
Query: 81 AEKVVEMFNRYE 92
A+K +E FNRY+
Sbjct: 159 ADKAIETFNRYD 170
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + + +L +F++ G V + +++ RET RS GFGFVTM++ E+ + +
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 88 FN 89
+
Sbjct: 260 LD 261
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 65/72 (90%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+EPPE+AK++VGNL YDVDSE+LA LF+QAGVVE++EVI+ RE+ +S GFGFVTMST+EE
Sbjct: 99 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEE 158
Query: 81 AEKVVEMFNRYE 92
A+K +E FNRY+
Sbjct: 159 ADKAIETFNRYD 170
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + + +L +F++ G V + +++ RET RS GFGFVTM++ E+ + +
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 88 FN 89
+
Sbjct: 260 LD 261
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 74/85 (87%)
Query: 8 GEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRS 67
GEESFGDGSE + EPPE+AKL+VGNL YDV+SE LA LF+QAG VE++E+I+ RETD+S
Sbjct: 79 GEESFGDGSEETFPEPPEEAKLYVGNLPYDVNSENLAQLFDQAGTVEVAEIIYNRETDQS 138
Query: 68 TGFGFVTMSTVEEAEKVVEMFNRYE 92
GFGFVTMSTV+EAEK +E F+RY+
Sbjct: 139 RGFGFVTMSTVDEAEKAIEKFHRYD 163
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD +L +F++ G V + V+ RET RS GFGFVTMS+
Sbjct: 192 RIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSS---------- 241
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E++LNDAIAALDGQ+
Sbjct: 242 -------------------ETELNDAIAALDGQS 256
>gi|357148860|ref|XP_003574918.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 64/70 (91%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PPE+AK++VGNL YDVDSE+LA LF+QAGVVE++EVI+ RE+ +S GFGFVTMST+EEA+
Sbjct: 104 PPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 163
Query: 83 KVVEMFNRYE 92
K +EMFNRY+
Sbjct: 164 KAIEMFNRYD 173
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + + +L LF++ G V + V++ RET RS GFGFVTM++ EE
Sbjct: 203 RAYVGNLPWQAEDSRLVQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKEE------- 255
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
L+DAI+ALDGQ
Sbjct: 256 ----------------------LDDAISALDGQ 266
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 66/81 (81%), Gaps = 1/81 (1%)
Query: 13 GDGSE-VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFG 71
GD SE ++ EP E+AKLFVGNL YDVDS+ LA LF QAG VEI+EVI+ RETD+S GFG
Sbjct: 112 GDVSEGAEFPEPSEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFG 171
Query: 72 FVTMSTVEEAEKVVEMFNRYE 92
FVTMSTVEEAE VE FNRY+
Sbjct: 172 FVTMSTVEEAETAVEKFNRYD 192
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L +F++ G V + V++ RET RS GFGFV
Sbjct: 222 RVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFV-------------- 267
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TMS+E++LNDAIAALDGQ
Sbjct: 268 ---------------TMSNENELNDAIAALDGQ 285
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+ EPPE+AK++VGNL YDV SEKLA LF+QAG VEISEVI+ ETD S GFGFVTMSTVE
Sbjct: 109 FVEPPEEAKIYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTVE 168
Query: 80 EAEKVVEMFNRY 91
E++K +EMFNRY
Sbjct: 169 ESDKAIEMFNRY 180
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VDS +L +F++ G V ++V+ ET RS GFGFVTMS+
Sbjct: 211 RIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSS---------- 260
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
ES+LNDAIAALDGQ
Sbjct: 261 -------------------ESELNDAIAALDGQ 274
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 70/82 (85%), Gaps = 2/82 (2%)
Query: 13 GDGSEVDYS--EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
GD E +Y+ EPPE+AK++VGNL YD++SE LA LF+QAGVVE++EVI+ +ET +S GF
Sbjct: 95 GDEGEGEYAAVEPPEEAKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGF 154
Query: 71 GFVTMSTVEEAEKVVEMFNRYE 92
GFVTMST+EEA+K +EMFNRY+
Sbjct: 155 GFVTMSTIEEADKAIEMFNRYD 176
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + D +L LF++ G V + V++ RET RS GFGFVTM + EE
Sbjct: 206 RAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEE------- 258
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
L+DAI+ALDGQ
Sbjct: 259 ----------------------LDDAISALDGQ 269
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 70/82 (85%), Gaps = 2/82 (2%)
Query: 13 GDGSEVDYS--EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
GD E +Y+ EPPE+AK++VGNL YD++SE LA LF+QAGVVE++EVI+ +ET +S GF
Sbjct: 95 GDEGEGEYAAVEPPEEAKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGF 154
Query: 71 GFVTMSTVEEAEKVVEMFNRYE 92
GFVTMST+EEA+K +EMFNRY+
Sbjct: 155 GFVTMSTIEEADKAIEMFNRYD 176
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + D +L LF++ G V + V++ RET RS GFGFVTM + EE
Sbjct: 206 RAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEE------- 258
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
L+DAI+ALDGQ
Sbjct: 259 ----------------------LDDAISALDGQ 269
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 64/71 (90%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+EPPE+AK++VGNL YDVDSE+LA LF+QAGVVE++EVI+ +E+ +S GFGFVTMST+EE
Sbjct: 99 AEPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEE 158
Query: 81 AEKVVEMFNRY 91
A+K +E FNRY
Sbjct: 159 ADKAIETFNRY 169
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + + +L +F++ G V + +++ RET RS GFGFVTM++ E+ + +
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 88 FN 89
+
Sbjct: 260 LD 261
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 64/71 (90%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EPPE+AK++VGNL YDVDSE LA +F+QAGVVE++EVI+ RET +S GFGFVTMSTVEEA
Sbjct: 103 EPPEEAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEA 162
Query: 82 EKVVEMFNRYE 92
+K +EMF+RY+
Sbjct: 163 DKAIEMFSRYD 173
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + VD +L LF++ G V ++V++ RET RS GFGFV+M + EE
Sbjct: 203 RAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEE------- 255
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LNDAI+ALDGQ
Sbjct: 256 ----------------------LNDAISALDGQ 266
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 64/71 (90%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EPPE+AK++VGNL YDVDSE LA +F+QAGVVE++EVI+ RET +S GFGFVTMSTVEEA
Sbjct: 103 EPPEEAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEA 162
Query: 82 EKVVEMFNRYE 92
+K +EMF+RY+
Sbjct: 163 DKAIEMFSRYD 173
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + VD +L LF++ G V ++V++ RET RS GFGFV+M + EE
Sbjct: 203 RAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEE------- 255
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LNDAI+ALDGQ
Sbjct: 256 ----------------------LNDAISALDGQ 266
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 66/86 (76%), Gaps = 4/86 (4%)
Query: 7 GGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR 66
GGE+ G D++EP EDAKLFVGNL YDVDSEKLA LF AG VEI+EVI+ RETD+
Sbjct: 93 GGEDYAGG----DFAEPSEDAKLFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIYNRETDQ 148
Query: 67 STGFGFVTMSTVEEAEKVVEMFNRYE 92
S GFGFVTMSTVEEAE FNRY+
Sbjct: 149 SRGFGFVTMSTVEEAEAGAAKFNRYD 174
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +++D +L +F++ G V + V++ RET RS GFGFV
Sbjct: 207 RVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFV-------------- 252
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
TMSDE ++NDAIAALDGQ
Sbjct: 253 ---------------TMSDEKEMNDAIAALDGQ 270
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 6/91 (6%)
Query: 8 GEESFGDGSE------VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61
G+ES GD SE ++ EP E+AKLFVGNL YDV+S+ LA LF QAG VEI+EVI+
Sbjct: 110 GDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 169
Query: 62 RETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
RETD+S GFGFVTMS+V+EAE VE FNRY+
Sbjct: 170 RETDQSRGFGFVTMSSVDEAETAVEKFNRYD 200
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V++ RET RS GFGFVTMS V+E
Sbjct: 230 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE------- 282
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LN+AI+ALDGQ
Sbjct: 283 ----------------------LNEAISALDGQ 293
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 6/91 (6%)
Query: 8 GEESFGDGSE------VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61
G+ES GD SE ++ EP E+AKLFVGNL YDV+S+ LA LF QAG VEI+EVI+
Sbjct: 125 GDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
Query: 62 RETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
RETD+S GFGFVTMS+V+EAE VE FNRY+
Sbjct: 185 RETDQSRGFGFVTMSSVDEAETAVEKFNRYD 215
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V++ RET RS GFGFVTMS V+E
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE------- 297
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LN+AI+ALDGQ
Sbjct: 298 ----------------------LNEAISALDGQ 308
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 6/91 (6%)
Query: 8 GEESFGDGSE------VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61
G+ES GD SE ++ EP E+AKLFVGNL YDV+S+ LA LF QAG VEI+EVI+
Sbjct: 125 GDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
Query: 62 RETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
RETD+S GFGFVTMS+V+EAE VE FNRY+
Sbjct: 185 RETDQSRGFGFVTMSSVDEAETAVEKFNRYD 215
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V++ RET RS GFGFVTMS V+E
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE------- 297
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LN+AI+ALDGQ
Sbjct: 298 ----------------------LNEAISALDGQ 308
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 6/91 (6%)
Query: 8 GEESFGDGSE------VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61
G+ES GD SE ++ EP E+AKLFVGNL YDV+S+ LA LF QAG VEI+EVI+
Sbjct: 100 GDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 159
Query: 62 RETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
RETD+S GFGFVTMS+V+EAE VE FNRY+
Sbjct: 160 RETDQSRGFGFVTMSSVDEAETAVEKFNRYD 190
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V++ RET RS GFGFVTMS V+E
Sbjct: 220 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE------- 272
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LN+AI+ALDGQ
Sbjct: 273 ----------------------LNEAISALDGQ 283
>gi|217072826|gb|ACJ84773.1| unknown [Medicago truncatula]
Length = 232
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 63/79 (79%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
D +E + EPPEDAKLFVGN +DVDSEKLA LF QAG VEI+EVI+ R+TD S GFGFV
Sbjct: 96 DSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFV 155
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TM+TVEEAE VE FN Y+
Sbjct: 156 TMNTVEEAESAVEKFNGYD 174
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 6/91 (6%)
Query: 8 GEESFGDGSE------VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61
G+ES GD SE ++ EP E+AKLFVGNL YDV+S+ LA LF QAG VEI+EVI+
Sbjct: 111 GDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 170
Query: 62 RETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
RETD+S GFGFVTMS+V+EAE VE FNRY+
Sbjct: 171 RETDQSRGFGFVTMSSVDEAETAVEKFNRYD 201
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V++ RET RS GFGFVTMS V+E
Sbjct: 231 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE------- 283
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LN+AI+ALDGQ
Sbjct: 284 ----------------------LNEAISALDGQ 294
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 6/91 (6%)
Query: 8 GEESFGDGSE------VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61
G+ES GD SE ++ EP E+AKLFVGNL YDV+S+ LA LF QAG VEI+EVI+
Sbjct: 106 GDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 165
Query: 62 RETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
RETD+S GFGFVTMS+V+EAE VE FNRY+
Sbjct: 166 RETDQSRGFGFVTMSSVDEAETAVEKFNRYD 196
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V++ RET RS GFGFVTMS V+E
Sbjct: 226 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE------- 278
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LN+AI+ALDGQ
Sbjct: 279 ----------------------LNEAISALDGQ 289
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 63/79 (79%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
D +E + EPPEDAKLFVGN +DVDSEKLA LF QAG VEI+EVI+ R+TD S GFGFV
Sbjct: 96 DSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFV 155
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TM+TVEEAE VE FN Y+
Sbjct: 156 TMNTVEEAESAVEKFNGYD 174
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++V NL ++VD+ +L +F++ G + + V++ RET RS GFGFV
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFV-------------- 252
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
TMSDE+++NDAIAALDGQ+
Sbjct: 253 ---------------TMSDETEMNDAIAALDGQS 271
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 59/66 (89%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLFVGNL YDVDSE LA LF QAGVVEI+EVI+ R+TD+S GFGFVTMSTVEEAEK VE
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 87 MFNRYE 92
M+NRY+
Sbjct: 196 MYNRYD 201
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 33/104 (31%)
Query: 22 EPP----EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
PP + +++VGN+ + +D +L LF++ G V + V++ RET RS GFGFVTM++
Sbjct: 221 RPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMAS 280
Query: 78 VEEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E++++DAIA LDGQ+
Sbjct: 281 -----------------------------EAEMSDAIANLDGQS 295
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 59/67 (88%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
DAK+FVGNL YDVDS+KLA LF QAG VEI+EVI+ RETD S GFGFV+MSTVEEAEK V
Sbjct: 140 DAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAV 199
Query: 86 EMFNRYE 92
EMF+R++
Sbjct: 200 EMFHRHD 206
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L +F++ G V + V++ R+T RS GFGFVTMST
Sbjct: 236 RIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMST---------- 285
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E++LNDAIAALDG++
Sbjct: 286 -------------------ETELNDAIAALDGRS 300
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 8 GEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRS 67
GE F D E YS PPE+ K+FVGNL +D++S LA LFN+AGVVE +EVI+ RETD+S
Sbjct: 118 GEVGFAD-EEDSYSAPPEEVKIFVGNLPFDLESADLADLFNKAGVVESAEVIYNRETDQS 176
Query: 68 TGFGFVTMSTVEEAEKVVEMFNRYE 92
GFGFV+MSTVEE K +EMF+RY+
Sbjct: 177 RGFGFVSMSTVEEVVKAIEMFDRYD 201
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 23 PPEDA----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
PP D +++VGN+ + VD+ +L LF++ G VE + ++F RET RS GFGFVTMS+
Sbjct: 222 PPRDFEPAFRVYVGNIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSSQ 281
Query: 79 EEAEKVVEMFN 89
E E + +
Sbjct: 282 IEMEDAIAALD 292
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 61/68 (89%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+AK++VGNL YDVDSE+LA LF+QAGVVE++EVI+ RE+ +S GFGFVTMST+EEA+K
Sbjct: 1 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 60
Query: 85 VEMFNRYE 92
+E FNRY+
Sbjct: 61 IETFNRYD 68
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + + +L LF++ G V + V++ RET RS GFGFVTM++ E+ + +
Sbjct: 98 RAYVGNLPWQAEDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKEDLDSAISA 157
Query: 88 FN 89
+
Sbjct: 158 LD 159
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 57/66 (86%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL YDVDSE LA LF QAGVVE++EVI+ RET +S GFGFVTMST+EEA+K +E
Sbjct: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
Query: 87 MFNRYE 92
M NRY+
Sbjct: 76 MLNRYD 81
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + VD +L LF++ G V + V++ RE+ RS GFGFV+M++ EE
Sbjct: 111 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEE------- 163
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
L+DAI+ALDGQ
Sbjct: 164 ----------------------LDDAISALDGQ 174
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+ EP ED K+FVGNL +DVDSEKLA LF Q+G VEI+EVI+ R+TDRS GFGFVTMST E
Sbjct: 115 FEEPSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSE 174
Query: 80 EAEKVVEMFNRYE 92
E E+ V F+ +E
Sbjct: 175 EVERAVNKFSGFE 187
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL +DVD+ L LF++ G VE ++V++ RET R GFGFV
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFV-------------- 262
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
TMS+E+++NDAIAALDGQ+
Sbjct: 263 ---------------TMSNEAEMNDAIAALDGQS 281
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 60/66 (90%), Gaps = 1/66 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLFVGN+ YD DSEKLA+LF++AGVVE++EVI+ RETD+S GFGFVTMSTVEEAE+ VE
Sbjct: 30 AKLFVGNIPYD-DSEKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAVE 88
Query: 87 MFNRYE 92
M +RY+
Sbjct: 89 MLHRYD 94
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD +L LF++ G V + V++ R++ RS GFGFVT++T EE
Sbjct: 123 RVYVGNLPWQVDDSRLEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTLATREE------- 175
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
++DAIAALDGQ+
Sbjct: 176 ----------------------VDDAIAALDGQS 187
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 56/65 (86%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL YDVDSE LA LF QAGVVE++EVI+ RET +S GFGFVTMST+EEA+K +EM
Sbjct: 128 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 187
Query: 88 FNRYE 92
NRY+
Sbjct: 188 LNRYD 192
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + VD +L LF++ G V + V++ RE+ RS GFGFV+M++ EE
Sbjct: 222 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEE------- 274
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
L+DAI+ALDGQ
Sbjct: 275 ----------------------LDDAISALDGQ 285
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 56/65 (86%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL YDVDSE LA LF QAGVVE++EVI+ RET +S GFGFVTMST+EEA+K +EM
Sbjct: 129 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 188
Query: 88 FNRYE 92
NRY+
Sbjct: 189 LNRYD 193
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + VD +L LF++ G V + V++ RE+ RS GFGFV+M++ EE
Sbjct: 223 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEE------- 275
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
L+DAI+ALDGQ
Sbjct: 276 ----------------------LDDAISALDGQ 286
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 56/68 (82%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ K+FVGNL +D+DSE LA LF QAG VE++EVI+ R TDRS GFGFVTMST+EE +K
Sbjct: 115 EEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKA 174
Query: 85 VEMFNRYE 92
VEMF+ YE
Sbjct: 175 VEMFSGYE 182
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL ++VD +L +F++ G VE + V++ RET RS GFGFVTMS+
Sbjct: 215 RVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSS---------- 264
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E+ +NDAIAALDGQ+
Sbjct: 265 -------------------ETDMNDAIAALDGQS 279
>gi|255636284|gb|ACU18482.1| unknown [Glycine max]
Length = 280
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 56/68 (82%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ K+FVGNL +D+DSE LA LF QAG VE++EVI+ R TDRS GFGFVTMST+EE +K
Sbjct: 115 EEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKA 174
Query: 85 VEMFNRYE 92
VEMF+ YE
Sbjct: 175 VEMFSGYE 182
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 29/91 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL ++VD +L +F++ G VE + V++ RET RS GFGFVTMS+
Sbjct: 215 RVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSS---------- 264
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALD 118
E+ +NDAIAALD
Sbjct: 265 -------------------ETDMNDAIAALD 276
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 54/65 (83%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVGNL +D DSEKLA LF QAG VE++EVI+ R TDRS GFGFVTMST+EE EK V+M
Sbjct: 125 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 184
Query: 88 FNRYE 92
F+ YE
Sbjct: 185 FSGYE 189
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L +F++ G VE + V++ RET RS GFGFVTMS+
Sbjct: 218 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSS---------- 267
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E+ +NDAIAALDGQ+
Sbjct: 268 -------------------ETDMNDAIAALDGQS 282
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 54/65 (83%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVGNL +D DSEKLA LF QAG VE++EVI+ R TDRS GFGFVTMST+EE EK V+M
Sbjct: 123 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 182
Query: 88 FNRYE 92
F+ YE
Sbjct: 183 FSGYE 187
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L +F++ G VE + V++ RET RS GFGFVTMS+
Sbjct: 216 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSS---------- 265
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E+ +NDAIAALDGQ+
Sbjct: 266 -------------------ETDMNDAIAALDGQS 280
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 56/74 (75%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
DY PE KL+VGNL +D+DSE LA +F+++GVVE+ EVI+ R + RS GF FVTMSTV
Sbjct: 159 DYPPLPEGTKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTV 218
Query: 79 EEAEKVVEMFNRYE 92
EEAE ++ FN +E
Sbjct: 219 EEAEAAIKKFNGFE 232
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K++VGNL + V SE L N G V ++VI RET RS GFGFV+ S+ E E V
Sbjct: 270 KVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAV 327
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 56/74 (75%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
DY PE KL+VGNL +D+DSE LA +F+++GVVE+ EVI+ R + RS GF FVTMSTV
Sbjct: 151 DYPPLPEGTKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTV 210
Query: 79 EEAEKVVEMFNRYE 92
EEAE ++ FN +E
Sbjct: 211 EEAEAAIKKFNGFE 224
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K++VGNL + V SE L N G V ++VI RET RS GFGFV+ S+ E E V
Sbjct: 262 KVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAV 319
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
E++FGDG +S D KLFVGNL + VDS +LA LF AG VE+ EVI+ + T RS
Sbjct: 74 EDTFGDGDGPSFSR---DLKLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSR 130
Query: 69 GFGFVTMSTVEEAEKVVEMFNRYE 92
GFGFVTMS+VEEAE + FN YE
Sbjct: 131 GFGFVTMSSVEEAEAAAKQFNGYE 154
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 24 PEDA--KLFVGNLRYDVDSEKLAHLFNQAG--VVEISEVIFYRETDRSTGFGFVTMSTVE 79
P D+ ++ VGNL + VD L LF + G V+E + VI+ RE+ RS GFGFVT + +
Sbjct: 190 PSDSENRVHVGNLAWGVDDVALESLFREQGKKVLE-ARVIYDRESGRSRGFGFVTFGSPD 248
Query: 80 EAEKVVEMFN 89
E + ++ +
Sbjct: 249 EVKSAIQSLD 258
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
E++F DG +S D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS
Sbjct: 71 EDTFSDGDGPSFSP---DLKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSR 127
Query: 69 GFGFVTMSTVEEAEKVVEMFNRYE 92
GFGFVTMS+VEEAE + FN YE
Sbjct: 128 GFGFVTMSSVEEAEAAAQQFNGYE 151
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 24 PEDA--KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
P D+ ++ V NL + VD+ L LF + G V + VI+ RE+ RS GFGFVT S+ +E
Sbjct: 187 PSDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEV 246
Query: 82 EKVVEMFN 89
++ N
Sbjct: 247 NSAIQSLN 254
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 50/67 (74%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
ED K+FVGNL + VDS +LA LF QAG VE+ EV++ R+T RS GFGFVTMST EEA
Sbjct: 73 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 132
Query: 85 VEMFNRY 91
VE FN Y
Sbjct: 133 VEQFNGY 139
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 13 GDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGF 72
G GS D S KL+VGNL + VD+ L +LF++ G V ++VI+ RE+ RS GFGF
Sbjct: 166 GGGSNFDSSN-----KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGF 220
Query: 73 VTMSTVEEAEKVV 85
VT + EE +
Sbjct: 221 VTYGSAEEVNNAI 233
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 50/67 (74%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
ED K+FVGNL + VDS +LA LF QAG VE+ EV++ R+T RS GFGFVTMST EEA
Sbjct: 78 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 137
Query: 85 VEMFNRY 91
VE FN Y
Sbjct: 138 VEQFNGY 144
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 13 GDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGF 72
G GS D S KL+VGNL + VD+ L +LF++ G V ++VI+ RE+ RS GFGF
Sbjct: 171 GGGSNFDSSN-----KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGF 225
Query: 73 VTMSTVEEAEKVV 85
VT + EE +
Sbjct: 226 VTYGSAEEVNNAI 238
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 59/86 (68%), Gaps = 6/86 (6%)
Query: 7 GGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR 66
GGEE V +EP ED K+FVGNL +DV+SE LA LF +AG VE +EVI+ + T++
Sbjct: 106 GGEEV------VASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQ 159
Query: 67 STGFGFVTMSTVEEAEKVVEMFNRYE 92
S GFGFV MST E+ EK + F+ YE
Sbjct: 160 SRGFGFVIMSTAEDLEKALNKFSGYE 185
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL + VD+ +L +F + G VE + ++ RET RS GFGFVTMS+
Sbjct: 223 VYVGNLPWSVDAARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSS----------- 271
Query: 89 NRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E+ +N AIAALDGQ+
Sbjct: 272 ------------------EADINGAIAALDGQS 286
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 50/67 (74%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
ED K+FVGNL + VDS +LA LF QAG VE+ EV++ R+T RS GFGFVTMST EEA
Sbjct: 19 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 78
Query: 85 VEMFNRY 91
+E FN Y
Sbjct: 79 IEQFNGY 85
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 13 GDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGF 72
G GS D S KL+VGNL + VD+ L +LF++ G V ++VI+ RE+ RS GFGF
Sbjct: 112 GGGSNFDSSN-----KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGF 166
Query: 73 VTMSTVEEAEKVV 85
VT + EE +
Sbjct: 167 VTYGSAEEVNNAI 179
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 54/78 (69%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
+G+E E ED KLFVGNL + VDS +LA LF QAG VE+ EV++ R T RS GFGFV
Sbjct: 64 EGAEQQDGEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFV 123
Query: 74 TMSTVEEAEKVVEMFNRY 91
TMS+ EEA VE FN Y
Sbjct: 124 TMSSAEEAGAAVEQFNGY 141
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K++VGNL + VD+ L +LF++ G V ++VI+ R++ RS GFGFVT + EE +
Sbjct: 184 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAI 241
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 7 GGEESF-GDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD 65
G EE F DG E +S+ D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T
Sbjct: 72 GQEEDFLSDGDEQSFSQ---DLKLFVGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTG 128
Query: 66 RSTGFGFVTMSTVEEAEKVVEMFNRYE 92
RS GFGFVTM+T+EE E + FN YE
Sbjct: 129 RSRGFGFVTMTTIEEVEAASKQFNGYE 155
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL ++VD+ L LF + G V ++V++ R++ RS GFGFVT S+ EE + ++
Sbjct: 190 RVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDS 249
Query: 88 FN 89
N
Sbjct: 250 LN 251
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 48/67 (71%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
ED KLFVGNL + VDS +LA LF QAG VE+ EV++ R T RS GFGFVTMST EE
Sbjct: 82 EDLKLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAA 141
Query: 85 VEMFNRY 91
VE FN Y
Sbjct: 142 VEQFNGY 148
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KL+VGNL + VD+ L +LF++ G V ++VI+ R++ RS GFGFVT + +E +
Sbjct: 190 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 247
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 57/91 (62%), Gaps = 11/91 (12%)
Query: 1 EIGGFIGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIF 60
E G GGEE F ED ++FVGNL + VDS +LA LF QAG VE+ EVI+
Sbjct: 68 EAEGQPGGEEEFS-----------EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIY 116
Query: 61 YRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91
+ T RS GFGFVTMS+V+E E VE FN Y
Sbjct: 117 DKLTGRSRGFGFVTMSSVQEVEAAVEQFNGY 147
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+++VGNL + VD+ LA+LF++ G V + +++ RE+ RS GFGFVT + EE E +
Sbjct: 178 RVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAI 235
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
E+ FGDG E +S D +LFVGNL ++V+S +LA LF AG VE+ EV + + T RS
Sbjct: 76 EDVFGDGDEPSFSP---DLQLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSR 132
Query: 69 GFGFVTMSTVEEAEKVVEMFNRYE 92
GFGFVTMST+EE E + FN YE
Sbjct: 133 GFGFVTMSTIEEVEAASQQFNGYE 156
Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL ++VD L LF + G V ++V++ R++ RS GFGFVT S+ EE E V+
Sbjct: 203 RVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDS 262
Query: 88 FN 89
N
Sbjct: 263 LN 264
>gi|301087136|gb|ADK60785.1| chloroplast ribonucleoprotein [Arachis diogoi]
Length = 146
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
EE DG + +S D KLFVGNL + VDS +LA LF AG VE+ EVI+ + + RS
Sbjct: 53 EEILSDGDDRSFSP---DLKLFVGNLPFSVDSAQLAELFESAGTVEVVEVIYDKMSGRSR 109
Query: 69 GFGFVTMSTVEEAEKVVEMFNRYE 92
GFGFVTMS++EEAE + F+ YE
Sbjct: 110 GFGFVTMSSIEEAEAAKQQFDGYE 133
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 16 SEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTM 75
SE +YSE D K+FVGNL + VDS +LA LF QAG VE+ EV++ R T RS GFGFVTM
Sbjct: 79 SEAEYSE---DLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTM 135
Query: 76 STVEEAEKVVEMFNRY 91
+VEE VE FN Y
Sbjct: 136 GSVEEVAAAVEQFNGY 151
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KL+VGNL + VD+ L +LF++ G V ++VI+ R++ RS GFGFVT + +E +
Sbjct: 193 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 250
>gi|357128483|ref|XP_003565902.1| PREDICTED: uncharacterized protein LOC100828680 [Brachypodium
distachyon]
Length = 357
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
+Y P + L+VGNLR+ +D E LA LF G+VE SE+++ RET +S G+G+VTMSTV
Sbjct: 199 EYYGPAAEGTLYVGNLRHHIDDEYLAQLFENVGIVEFSEILYDRETGQSRGYGYVTMSTV 258
Query: 79 EEAEKVVEMFNRYE 92
EEAE V F+R E
Sbjct: 259 EEAEMAVNTFHRRE 272
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 9 EESFGDGSEVDYSEPPE---DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVI--FYRE 63
E +G V+ P + ++FVGNL +VD L LF++ G V ++V + +
Sbjct: 271 RELYGKLMTVEMRSPHQHRSPVRIFVGNLPCEVDGSMLNLLFSEHGQVVDTKVAYGYVKG 330
Query: 64 TDRSTGFGFVTMSTVEEAEKVV 85
RS FGFVTM+T EE++ +
Sbjct: 331 VWRSRRFGFVTMATREESDDAI 352
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Query: 19 DYSEPP--EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
D EP D KLFVGNL ++VDS LA LF QAG VE+ EVI+ + T RS GFGFVTMS
Sbjct: 80 DEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSRGFGFVTMS 139
Query: 77 TVEEAEKVVEMFNRYE 92
TVEE E + FN YE
Sbjct: 140 TVEEVEAAAQQFNGYE 155
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+++VGNL + VD L LF++ G V + VI+ RET RS GFGFVT ++ EE + +E
Sbjct: 205 RIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIE 263
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+D ++FVGNL + VDS +LA LF QAG VE+ EVI+ + T RS GFGFVTMS+VEE E
Sbjct: 84 DDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAA 143
Query: 85 VEMFNRY 91
VE FN Y
Sbjct: 144 VEQFNGY 150
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++VGNL + VD+ LA+LF+ G V ++VI+ RE+ RS GFGFVT + EE E
Sbjct: 178 EANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENA 237
Query: 85 V 85
V
Sbjct: 238 V 238
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+D ++FVGNL + VDS +LA LF QAG VE+ EVI+ + T RS GFGFVTMS+VEE E
Sbjct: 84 DDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAA 143
Query: 85 VEMFNRY 91
VE FN Y
Sbjct: 144 VEQFNGY 150
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++VGNL + VD+ LA+LF+ G V ++VI+ RE+ RS GFGFVT + EE E
Sbjct: 178 EANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENA 237
Query: 85 V 85
V
Sbjct: 238 V 238
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 48/66 (72%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D KLFVGNL + VDS +LA LF QAG VE+ EV++ R T RS GFGFVTMS+ EEA V
Sbjct: 77 DLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAV 136
Query: 86 EMFNRY 91
E FN Y
Sbjct: 137 EQFNGY 142
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K++VGNL + VD+ L +LF++ G V ++VI+ RE+ RS GFGFVT T E +
Sbjct: 185 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAI 242
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
E+ DG E +S+ D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS
Sbjct: 77 EDVSSDGDESSFSQ---DLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSR 133
Query: 69 GFGFVTMSTVEEAEKVVEMFNRYE 92
GFGFVTMS+++E E + FN YE
Sbjct: 134 GFGFVTMSSIDEVEAAAQQFNGYE 157
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +L+VGNL + VD+ L F++ G V ++V++ RE+ RS GFGFVT S+ EE E
Sbjct: 194 EGNRLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENA 253
Query: 85 VEMFN 89
++ N
Sbjct: 254 IDSLN 258
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
ED ++FVGNL + VDS +LA LF QAG VE+ EVI+ + T RS GFGFVTMS+VEE E
Sbjct: 79 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVA 138
Query: 85 VEMFNRY 91
V+ FN Y
Sbjct: 139 VDQFNGY 145
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 14 DGSEVDYSEPPEDA-KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGF 72
D S P DA +++VGNL + VD+ LA+LF++ G V + +I+ RE+ RS GFGF
Sbjct: 163 DRSSRSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGF 222
Query: 73 VTMSTVEEAEKVV 85
VT + EE E +
Sbjct: 223 VTYGSAEEVENAI 235
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 17 EVDYSEPP---EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
+V+ +E P ED KLFVGNL + VDS LA LF +AG VE+ EVI+ + T RS GFGFV
Sbjct: 74 DVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFV 133
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMST EE E + FN YE
Sbjct: 134 TMSTKEEVEAAEQQFNGYE 152
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 3 GGFIGGEESFGD---GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVI 59
GG G SFG G VD S +++VGNL + VD L LF++ G V ++V+
Sbjct: 185 GGGRDGNSSFGGARGGRSVDSSN-----RVYVGNLSWGVDDLALKELFSEQGNVVDAKVV 239
Query: 60 FYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
+ R++ RS GFGFVT S+ +E ++ N
Sbjct: 240 YDRDSGRSRGFGFVTYSSSKEVNDAIDSLN 269
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 17 EVDYSEPP---EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
+V+ +E P ED KLFVGNL + VDS LA LF +AG VEI EVI+ + + RS GFGFV
Sbjct: 75 DVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFV 134
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMST EE E + FN YE
Sbjct: 135 TMSTKEEVEAAEQQFNGYE 153
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 3 GGFIGGEESFGD---GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVI 59
GG G SFG G VD S +++VGNL + VD L LF++ G V ++V+
Sbjct: 186 GGGRDGNSSFGGARGGRSVDSSN-----RVYVGNLSWGVDDLALKELFSEQGNVVDAKVV 240
Query: 60 FYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
+ R++ RS GFGFVT S+ +E ++ N
Sbjct: 241 YDRDSGRSRGFGFVTYSSAKEVNDAIDSLN 270
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 52/84 (61%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
E+ F D + D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS
Sbjct: 73 EDGFADDAAPQQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSR 132
Query: 69 GFGFVTMSTVEEAEKVVEMFNRYE 92
GFGFVTMS+V E E FN YE
Sbjct: 133 GFGFVTMSSVSEVEAAANQFNGYE 156
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD L LF + G V + VI+ R++ RS GFGFVT ++ +E + +
Sbjct: 205 RVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAINS 264
Query: 88 FN 89
N
Sbjct: 265 LN 266
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName: Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor
gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFVTMS+V E E
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 86 EMFNRYE 92
+ FN YE
Sbjct: 150 QQFNGYE 156
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD L LF++ G V + VI+ R++ RS GFGFVT + +E + ++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 88 FN 89
+
Sbjct: 265 LD 266
>gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein, partial [Spinacia oleracea]
Length = 220
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 49/67 (73%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D K+FVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFVTMS+VEE E
Sbjct: 37 DLKIFVGNLPFNVDSAELAGLFGAAGTVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAA 96
Query: 86 EMFNRYE 92
+ FN YE
Sbjct: 97 QQFNNYE 103
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++ VGNL + VD + L LF++ G V ++VI+ R+T RS GFGFVT ++ E +E
Sbjct: 136 RVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIES 195
Query: 88 FN 89
+
Sbjct: 196 LD 197
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFVTMS+V E E
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 86 EMFNRYE 92
+ FN YE
Sbjct: 150 QQFNGYE 156
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD L LF++ G V + VI+ R++ RS GFGFVT + +E + ++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 88 FN 89
+
Sbjct: 265 LD 266
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%)
Query: 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
E ++ E PE KLFVGNL +++D+++L LF AG V +I RET S GFGFVTM
Sbjct: 103 ENEFVELPEGTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMG 162
Query: 77 TVEEAEKVVEMFNRY 91
TVEEAEK VE+FNR+
Sbjct: 163 TVEEAEKGVELFNRH 177
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 29/92 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL + D L LF++ G V + V++ RET RS GFGFVT S+
Sbjct: 208 KIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSS---------- 257
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
ES++NDAIAALDG
Sbjct: 258 -------------------ESEVNDAIAALDG 270
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 50/67 (74%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+D ++FVGNL + VDS +LA LF QAG VE+ EVI+ + T RS GFGFVTMS+VEE E
Sbjct: 79 DDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVA 138
Query: 85 VEMFNRY 91
V+ FN Y
Sbjct: 139 VDQFNGY 145
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 22 EPPEDA-KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
P DA +++VGNL + VD+ LA+LF++ G V + +I+ RE+ RS GFGFVT + EE
Sbjct: 171 RPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEE 230
Query: 81 AEKVV 85
E +
Sbjct: 231 VENAI 235
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 50/67 (74%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+D ++FVGNL + VDS +LA LF QAG VE+ EVI+ + T RS GFGFVTMS+VEE E
Sbjct: 81 DDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVA 140
Query: 85 VEMFNRY 91
V+ FN Y
Sbjct: 141 VDQFNGY 147
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 22 EPPEDA-KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
P DA +++VGNL + VD+ LA+LF++ G V + +I+ RE+ RS GFGFVT + EE
Sbjct: 173 RPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEE 232
Query: 81 AEKVV 85
E +
Sbjct: 233 VENAI 237
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%)
Query: 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
E ++ E PE KLFVGNL +++D+++L LF AG V +I RET S GFGFVTM
Sbjct: 103 ENEFVELPEWTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMG 162
Query: 77 TVEEAEKVVEMFNRY 91
TVEEAEK VE+FNR+
Sbjct: 163 TVEEAEKGVELFNRH 177
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 29/92 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL + D L LF++ G V + V++ RET RS GFGFVT S+
Sbjct: 208 KIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSS---------- 257
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
ES++NDAIAALDG
Sbjct: 258 -------------------ESEVNDAIAALDG 270
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
DG + Y+ D KLFVGNL + VDS +LA LF AG VE EVI+ + T RS GFGFV
Sbjct: 83 DGDDSSYAP---DLKLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFV 139
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMSTV E E + FN YE
Sbjct: 140 TMSTVGEVEAAAQQFNGYE 158
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++ V NL + VD L +LF + G V ++V++ R++ +S GFGFVT ++ EE + ++
Sbjct: 194 RVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQS 253
Query: 88 FN 89
+
Sbjct: 254 LD 255
>gi|383142217|gb|AFG52468.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 47/70 (67%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P D K+FVGNL + VDS KLA LF G V + EVI+ R+T RS GF FVTM+T E+A+
Sbjct: 13 PSADIKVFVGNLPWSVDSAKLAELFKDPGDVTMVEVIYDRQTGRSRGFAFVTMATQEDAD 72
Query: 83 KVVEMFNRYE 92
VE N YE
Sbjct: 73 SAVEKLNGYE 82
>gi|383142223|gb|AFG52471.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P D K+FVGNL + VDS +LA LF AG V + EVI+ R+T RS GF FVTM+T E+A+
Sbjct: 13 PSADIKVFVGNLPWSVDSAELAELFKDAGDVTMVEVIYDRQTGRSRGFAFVTMATQEDAD 72
Query: 83 KVVEMFNRYE 92
VE N YE
Sbjct: 73 SAVEKLNGYE 82
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KL+VGNL Y + S +L +F +AG V +EVI+ R TDRS GFGFVTM +VEEA+K
Sbjct: 111 EEGKLYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKA 170
Query: 85 VEMFN 89
++MFN
Sbjct: 171 IQMFN 175
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVT 74
K++ GNL + + SE L F NQ GV+ ++VI+ R++ RS GFGFV+
Sbjct: 217 KIYAGNLGWRLTSEGLRDAFANQPGVLS-AKVIYERDSRRSRGFGFVS 263
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S P + K+FVGNL + VDS +LA LF +G V + EVI+ R+T RS GF FVTM+T +
Sbjct: 107 SSPSANLKVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQAD 166
Query: 81 AEKVVEMFNRYE 92
A++ VE FN YE
Sbjct: 167 ADEAVEKFNGYE 178
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
++FVGNL + D L LF+ G V ++V++ RET RS GFGFVT+S+ +E E+ +
Sbjct: 217 RVFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAI 274
>gi|383142221|gb|AFG52470.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
gi|383142225|gb|AFG52472.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 47/70 (67%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P D K+FVGNL + VDS +LA LF AG V + EVI+ R+T RS GF FVTM+ E+A+
Sbjct: 13 PSADIKVFVGNLPWSVDSAELAELFKDAGDVTMVEVIYDRQTGRSCGFAFVTMAMQEDAD 72
Query: 83 KVVEMFNRYE 92
VE N YE
Sbjct: 73 SAVEKLNGYE 82
>gi|383142219|gb|AFG52469.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 47/70 (67%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P D K+FVGNL + VDS +LA LF G V + EVI+ R+T RS GF FVTM+T E+A+
Sbjct: 13 PSADIKVFVGNLPWSVDSAELAELFKDPGDVTMVEVIYDRQTGRSRGFAFVTMATQEDAD 72
Query: 83 KVVEMFNRYE 92
VE N YE
Sbjct: 73 SAVEKLNGYE 82
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
gi|195649373|gb|ACG44154.1| ribonucleoprotein A [Zea mays]
gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A [Zea mays]
Length = 268
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 7 GGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR 66
G E+ DGSE ++SE D KLFVGNL + VDS +LA LF QAG VE+ EV++ R T R
Sbjct: 63 GAEQEGEDGSE-EFSE---DLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGR 118
Query: 67 STGFGFVTMSTVEEAEKVVEMFNRY 91
S GFGFVTMS+ EEAE VE FN Y
Sbjct: 119 SRGFGFVTMSSAEEAEAAVEQFNGY 143
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K++VGNL + VD+ L +LF++ G V ++VI+ R++ RS GFGFVT + +E +
Sbjct: 185 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNAI 242
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
DG E + + P D K+FVGNL + DS LA LF +AG VE+ EVI+ + T RS GFGFV
Sbjct: 75 DGVEEERNFSP-DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 133
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMS+ EE E + FN YE
Sbjct: 134 TMSSKEEVEAACQQFNGYE 152
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD + L LF++ G V ++V++ R++ RS GFGFVT S+ EE +E
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 88 FN 89
+
Sbjct: 249 LD 250
>gi|414883567|tpg|DAA59581.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 385
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 12/96 (12%)
Query: 21 SEPP---EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
S PP + +LFVGNL Y SE+LA +F++AG V+ +++I+ + T+RS GF FVTM+T
Sbjct: 103 SRPPRGDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMAT 162
Query: 78 VEEAEKVVEMF---------NRYETGCSHGFGFFTM 104
EEA K ++MF N T H G +
Sbjct: 163 AEEAAKAIQMFDGAVSTAPANWISTSTPHRIGILLL 198
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + V ++ L ++F +AG+++ + VIF RET RS GFGFV+ ST E+A+ +E
Sbjct: 256 KIYAGNLGWGVRADTLRNVFEGRAGLLD-ARVIFERETGRSRGFGFVSFSTAEDAQAALE 314
Query: 87 MFN 89
+
Sbjct: 315 SLD 317
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 46/67 (68%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D K+FVGNL + DS LA LF +AG VE+ EVI+ + T RS GFGFVTMS+ EE E
Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145
Query: 86 EMFNRYE 92
+ FN YE
Sbjct: 146 QQFNGYE 152
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD + L LF++ G V ++V++ R++ RS GFGFVT S+ EE +E
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 88 FN 89
+
Sbjct: 255 LD 256
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
Query: 21 SEPP---EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
S PP + +LFVGNL Y SE+LA +F++AG V+ +++I+ + T+RS GF FVTM+T
Sbjct: 103 SRPPRGDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMAT 162
Query: 78 VEEAEKVVEMFN 89
EEA K ++MF+
Sbjct: 163 AEEAAKAIQMFD 174
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + V ++ L ++F +AG+++ + VIF RET RS GFGFV+ ST E+A+ +E
Sbjct: 212 KIYAGNLGWGVRADTLRNVFEGRAGLLD-ARVIFERETGRSRGFGFVSFSTAEDAQAALE 270
Query: 87 MFN 89
+
Sbjct: 271 SLD 273
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 46/67 (68%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D K+FVGNL + VDS LA LF +AG VE+ EVI+ + T RS GFGFVTMS+ E E
Sbjct: 98 DLKIFVGNLPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAAC 157
Query: 86 EMFNRYE 92
+ FN YE
Sbjct: 158 QQFNGYE 164
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 14/95 (14%)
Query: 9 EESFGD---------GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVI 59
E SFGD G +D S +++VGNL + VD ++L LF++ G V ++V+
Sbjct: 182 ENSFGDNSSYQGGRGGGSMDSSN-----RVYVGNLAWSVDQQQLETLFSEQGKVVDAKVV 236
Query: 60 FYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETG 94
+ R++ RS GFGFVT S+ +E +E + + G
Sbjct: 237 YDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLG 271
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
Query: 21 SEPP---EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
S PP + +LFVGNL Y SE+LA +F++AG V+ +++I+ + T+RS GF FVTM+T
Sbjct: 103 SRPPRGDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMAT 162
Query: 78 VEEAEKVVEMFN 89
EEA K ++MF+
Sbjct: 163 AEEAAKAIQMFD 174
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + V ++ L ++F +AG+++ + VIF RET RS GFGFV+ ST E+A+ +E
Sbjct: 212 KIYAGNLGWGVRADTLRNVFEGRAGLLD-ARVIFERETGRSRGFGFVSFSTAEDAQAALE 270
Query: 87 MFN 89
+
Sbjct: 271 SLD 273
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KL+VGNL Y + S +LA +F +AG V +EVI R TDRS GFGFVTM +VEEA++
Sbjct: 114 EEGKLYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEA 173
Query: 85 VEMFNRYETG 94
+ MFN + G
Sbjct: 174 IRMFNGSQVG 183
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVT 74
K++ GNL + + SE L F NQ G++ ++VI+ R+T RS GFGFV+
Sbjct: 220 KIYAGNLGWRLTSEGLGDAFANQPGLLS-AKVIYERDTGRSRGFGFVS 266
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 51/70 (72%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ +L+VGNL Y + S +L+ LF +AG V ++++ + TDRS GFGFVTM T+EEA++
Sbjct: 115 EEGRLYVGNLPYTITSSELSQLFGEAGNVVDVQIVYDKVTDRSRGFGFVTMGTIEEAKEA 174
Query: 85 VEMFNRYETG 94
++MFN + G
Sbjct: 175 IQMFNSSQIG 184
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL +++ S+ L F +Q GV+ ++VI+ R T RS GFGF++ + E+ + +
Sbjct: 221 KIYAGNLGWNLTSQGLKDAFGDQPGVLG-AKVIYERNTGRSRGFGFISFESAEDVQSALA 279
Query: 87 MFN 89
N
Sbjct: 280 TMN 282
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
D + V+ + D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFV
Sbjct: 78 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 137
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMST E E + FN YE
Sbjct: 138 TMSTAAEVEAAAQQFNGYE 156
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + VD L +LFN+ G V + VI+ R++ RS GFGFVT+S+ +E +K +
Sbjct: 242 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 301
Query: 88 FN 89
N
Sbjct: 302 LN 303
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|186511018|ref|NP_850692.2| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein cp29; Flags: Precursor
gi|6729497|emb|CAB67653.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|18655393|gb|AAL76152.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|21593426|gb|AAM65393.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|332645568|gb|AEE79089.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645569|gb|AEE79090.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645570|gb|AEE79091.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 342
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
D + V+ + D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMST E E + FN YE
Sbjct: 146 TMSTAAEVEAAAQQFNGYE 164
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + VD L +LFN+ G V + VI+ R++ RS GFGFVT+S+ +E +K +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 88 FN 89
N
Sbjct: 318 LN 319
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
D + V+ + D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMST E E + FN YE
Sbjct: 146 TMSTAAEVEAAAQQFNGYE 164
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + VD L +LFN+ G V + VI+ R++ RS GFGFVT+S+ +E +K +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 88 FN 89
N
Sbjct: 310 LN 311
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
gi|297323759|gb|EFH54180.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
Length = 339
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
D + V+ + D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMST E E + FN YE
Sbjct: 146 TMSTAAEVEAAAQQFNGYE 164
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + VD L +LFN+ G V + VI+ R++ RS GFGFVT+S+ +E +K +
Sbjct: 255 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 314
Query: 88 FN 89
N
Sbjct: 315 LN 316
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 9 EESFGDG-SEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRS 67
EE G +E + + P + KL+ GNL Y+VDS +LA + + G E+ EV+++RET RS
Sbjct: 88 EEELASGETEGEADQVPVNTKLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRS 147
Query: 68 TGFGFVTMSTVEEAEKVVEMFN 89
GF FVTMS++E+ E V+E +
Sbjct: 148 RGFAFVTMSSIEDCETVIENLD 169
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLF+GNL + V SE L F + G V + V++ ET +S G+GFV ST EE E
Sbjct: 194 PETEYKLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELE 253
Query: 83 KVVEMFN 89
++ N
Sbjct: 254 TALQSLN 260
>gi|218202644|gb|EEC85071.1| hypothetical protein OsI_32418 [Oryza sativa Indica Group]
Length = 821
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 49/73 (67%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+S P+D ++VGNLR+DVD +L F + G V +++V+ YR+T RS GFGFV+M+T+
Sbjct: 522 HSFSPKDFSIYVGNLRWDVDRLRLLKFFGEHGRVLVAQVVCYRQTGRSRGFGFVSMATLR 581
Query: 80 EAEKVVEMFNRYE 92
E + V+ N E
Sbjct: 582 EPDDVIASLNGQE 594
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 51/70 (72%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ +L+VGNL Y + S +L+ +F +AG V ++++ + TDRS GFGFVTM ++EEA++
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 85 VEMFNRYETG 94
++MFN + G
Sbjct: 174 MQMFNSSQIG 183
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL +++ S+ L F +Q GV+ ++VI+ R T RS GFGF++ + E + +
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLG-AKVIYERNTGRSRGFGFISFESAENVQSALA 278
Query: 87 MFNRYE 92
N E
Sbjct: 279 TMNGVE 284
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 51/70 (72%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ +L+VGNL Y + S +L+ +F +AG V ++++ + TDRS GFGFVTM ++EEA++
Sbjct: 106 EEWRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 165
Query: 85 VEMFNRYETG 94
++MFN + G
Sbjct: 166 MQMFNSSQIG 175
Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL +++ S+ L F +Q GV+ ++VI+ R T RS GFGF++ + E + +
Sbjct: 212 KVYAGNLGWNLTSQGLKDAFGDQPGVLG-AKVIYERNTGRSRGFGFISFESAENVQSALA 270
Query: 87 MFNRYE 92
N E
Sbjct: 271 TMNGVE 276
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645571|gb|AEE79092.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 363
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 51/78 (65%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
D + V+ + D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 74 TMSTVEEAEKVVEMFNRY 91
TMST E E + FN Y
Sbjct: 146 TMSTAAEVEAAAQQFNGY 163
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + VD L +LFN+ G V + VI+ R++ RS GFGFVT+S+ +E +K +
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 88 FN 89
N
Sbjct: 339 LN 340
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 50/70 (71%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ +L+VGNL Y + S +L+ +F +AG V ++++ + TDRS GFGFVTM ++EEA+
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKGA 173
Query: 85 VEMFNRYETG 94
++MFN + G
Sbjct: 174 MQMFNSSQIG 183
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL +D+ S+ L F +Q GV+ ++VI+ R T RS GFGF++ + E + +
Sbjct: 220 KVYAGNLGWDLTSQGLKDAFGDQPGVLG-AKVIYERNTGRSRGFGFISFESAENVQSALA 278
Query: 87 MFNRYE 92
N E
Sbjct: 279 TMNGVE 284
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 46 LFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
LF QAG VEI+EVI+ RETD+S GFGFVTMS+V+EAE VE FNRY+
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYD 48
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V++ RET RS GFGFVTMS V+E
Sbjct: 78 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE------- 130
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LN+AI+ALDGQ
Sbjct: 131 ----------------------LNEAISALDGQ 141
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 47/62 (75%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LFVGNL Y SE+LA +F +AG V+ +++I+ + T+RS GF FVTM+T EEA K ++M
Sbjct: 111 RLFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 170
Query: 88 FN 89
F+
Sbjct: 171 FD 172
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + V ++ L ++F +AG+++ + VIF RET RS GFGFV+ T E+A+ +E
Sbjct: 210 KIYAGNLGWGVRADTLRNVFEGRAGLLD-ARVIFERETGRSRGFGFVSFRTAEDAQAALE 268
Query: 87 MFN 89
+
Sbjct: 269 ALD 271
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ E ++L+VGNL Y + S +L +FN+AG V E+++ R TDRS GF FVTM +V+E
Sbjct: 240 SDSAEASRLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQE 299
Query: 81 AEKVVEMFNRYETG 94
A++ + MF+ + G
Sbjct: 300 AKEAIRMFDGSQVG 313
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++ GNL + + SE L F + ++VI+ RE+ RS GFGF++ ++ E AE +
Sbjct: 350 KIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 409
Query: 88 FNRYE 92
B E
Sbjct: 410 MBEVE 414
>gi|326512018|dbj|BAJ95990.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 830
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 8/81 (9%)
Query: 23 PPED-----AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
PPE A ++V NL Y +D+E L F AGVV S+VI+ RE RS GFG+VTM+T
Sbjct: 560 PPEQDAREGATVYVRNLPYHLDNEGLKLNFQHAGVVLFSKVIYDREIGRSRGFGYVTMNT 619
Query: 78 VEEAEKVVEMFNRYETGCSHG 98
V+EAEK V +++ E HG
Sbjct: 620 VQEAEKAVRIYHGSEV---HG 637
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST--GFGFVTMSTVEEAEKVV 85
++FV NL VD+ +L LFN+ G V + VI+ R S GFGFVTM+T EE+ K +
Sbjct: 665 RIFVCNLPSQVDNSRLEELFNKHGQVVDARVIYERREGASCSRGFGFVTMATDEESYKAI 724
Query: 86 EMFNR 90
N+
Sbjct: 725 RALNK 729
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 50/67 (74%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
ED ++FVGNL + VDS +LA LF QAG VE+ EVI+ + T RS GFGFVTMSTVEE E+
Sbjct: 75 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 134
Query: 85 VEMFNRY 91
VE N Y
Sbjct: 135 VEQLNGY 141
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D +++VGNL ++VD LA+LFN+ G V + VI+ RE+ RS GFGFVT + EE EK V
Sbjct: 186 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSSEEVEKAV 245
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ E ++L+VGNL Y + S +L +FN+AG V E+++ R TDRS GF FVTM +V+E
Sbjct: 97 SDSAEASRLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQE 156
Query: 81 AEKVVEMFNRYETG 94
A++ + MF+ + G
Sbjct: 157 AKEAIRMFDGSQVG 170
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++ GNL + + SE L F + ++VI+ RE+ RS GFGF++ ++ E AE +
Sbjct: 207 KIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 266
Query: 88 FNRYE 92
N E
Sbjct: 267 MNEVE 271
>gi|255566169|ref|XP_002524072.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223536640|gb|EEF38282.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 190
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 48/65 (73%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ +L+VGNL Y + S +L + +AG V E+I+ R TDRS GFGFVTM++VEEA++
Sbjct: 114 DEGRLYVGNLPYSMTSSELTEVMQEAGSVANVEIIYDRVTDRSRGFGFVTMASVEEAKEA 173
Query: 85 VEMFN 89
++MFN
Sbjct: 174 IKMFN 178
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 50/67 (74%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
ED ++FVGNL + VDS +LA LF QAG VE+ EVI+ + T RS GFGFVTMSTVEE E+
Sbjct: 72 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 131
Query: 85 VEMFNRY 91
VE N Y
Sbjct: 132 VERLNGY 138
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D +++VGNL ++VD LA+LFN+ G V + VI+ RE+ RS GFGFVT T +E +K V
Sbjct: 182 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 241
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+E P + KL+ GNL Y+VDS +LA + + G E+ EV+++RET RS GF FVTMS++E+
Sbjct: 101 NEIPVNTKLYFGNLPYNVDSAQLAGIIQEYGSPEMVEVLYHRETGRSRGFAFVTMSSIED 160
Query: 81 AEKVVE 86
V+E
Sbjct: 161 CNAVIE 166
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + SE L F + G V + V++ ET +S G+GFV ST E +
Sbjct: 194 PETEYKLFVGNLSWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQ 253
Query: 83 KVV 85
+
Sbjct: 254 TAL 256
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++VGNL Y + +L +F++AG V+ ++I+ + TDRS GF FVTM+T EEA K
Sbjct: 119 EPGRIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKA 178
Query: 85 VEMFN 89
V+MFN
Sbjct: 179 VQMFN 183
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + V ++ L F Q G++ S VIF R+T RS GFGFV+ T+E+A ++
Sbjct: 226 KVYAGNLGWGVRADALKTAFEGQPGLLG-SRVIFERDTGRSRGFGFVSFQTLEDANAAIQ 284
Query: 87 MFN 89
+
Sbjct: 285 AMD 287
>gi|52076130|dbj|BAD46643.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076137|dbj|BAD46650.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|222642112|gb|EEE70244.1| hypothetical protein OsJ_30366 [Oryza sativa Japonica Group]
Length = 611
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+S P+D ++VGNLR+DVD +L F + G V +++V+ R+T RS GFGFV+M+T+
Sbjct: 520 HSFSPKDFSIYVGNLRWDVDRLRLLKFFGEHGRVLVAQVVCDRQTGRSRGFGFVSMATLR 579
Query: 80 EAEKVVEMFN 89
E + V+ N
Sbjct: 580 EPDDVIASLN 589
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL Y + + +L LF +AG V E+++ R TDRS GF FVTM +VE+A++ + M
Sbjct: 109 RLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRM 168
Query: 88 FNRYETG 94
F+ + G
Sbjct: 169 FDGSQVG 175
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++ GNL + + S+ L F + V ++VI+ R++ RS GFGFV+ T E A +++
Sbjct: 212 KIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDI 271
Query: 88 FNRYE 92
N E
Sbjct: 272 MNGVE 276
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL Y + + LA LF +AG V E+++ R TDRS GF FVTM VE+A++ + M
Sbjct: 106 RLYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRM 165
Query: 88 FNRYETG 94
F+ + G
Sbjct: 166 FDGSQVG 172
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++ GNL + + S+ L F + V ++VI+ R++ RS GFGFV+ T E A+ +++
Sbjct: 209 KIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDI 268
Query: 88 FNRYE 92
N E
Sbjct: 269 MNGVE 273
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++VGNL Y + +L F++AG V+ ++I+ + TDRS GF FVTM+T EEA K
Sbjct: 106 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKA 165
Query: 85 VEMFN 89
V+MFN
Sbjct: 166 VQMFN 170
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + V ++ L F Q G+V + VIF R+T RS GFGFV+ T+++A+ ++
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 271
Query: 87 MFNRYE 92
+ E
Sbjct: 272 AMDGVE 277
>gi|302754352|ref|XP_002960600.1| hypothetical protein SELMODRAFT_25552 [Selaginella
moellendorffii]
gi|302771648|ref|XP_002969242.1| hypothetical protein SELMODRAFT_15428 [Selaginella
moellendorffii]
gi|300162718|gb|EFJ29330.1| hypothetical protein SELMODRAFT_15428 [Selaginella
moellendorffii]
gi|300171539|gb|EFJ38139.1| hypothetical protein SELMODRAFT_25552 [Selaginella
moellendorffii]
Length = 197
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
SEP + KL+VGN+ ++VDS+ LA FN G+ E+ EV++ R +S GF FVT+ST +
Sbjct: 12 SEPAPNTKLYVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTEDA 71
Query: 81 AEKVVEMFNRYE 92
A+ +E + +E
Sbjct: 72 AKTAIEKLDGHE 83
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S P AK FV N+ + VD + L F+ G V ++ E+ RS G GFVT +T +E
Sbjct: 112 SIPANPAKCFVANIPWSVDDQGLQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDE 171
Query: 81 AEKVVEMFNRYETG 94
A + + E G
Sbjct: 172 ANNAISALDGAELG 185
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++VGNL Y + +L F++AG V+ ++I+ + TDRS GF FVTM+T EEA K
Sbjct: 106 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKA 165
Query: 85 VEMFN 89
V+MFN
Sbjct: 166 VQMFN 170
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + V ++ L F Q G+V + VIF R+T RS GFGFV+ T+++A+ ++
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 271
Query: 87 MFNRYE 92
+ E
Sbjct: 272 AMDGVE 277
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 49/70 (70%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E KL++GNL Y + S +L+ +F +AG V +VI+ + TDRS GF FVTM+T+EEA++
Sbjct: 113 EAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEA 172
Query: 85 VEMFNRYETG 94
+ MF+ + G
Sbjct: 173 IRMFDGSQIG 182
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + + S+ L F NQ G++ +++I+ R + +S GFGFV+ T E+AE +E
Sbjct: 219 KIYAGNLGWGLTSQSLRDAFENQPGILS-AKIIYDRASGKSRGFGFVSFETAEDAESALE 277
Query: 87 MFNRYE 92
N E
Sbjct: 278 SMNGVE 283
>gi|388499174|gb|AFK37653.1| unknown [Lotus japonicus]
Length = 302
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
E++F D +E P D K+FVGNL + VDS +LA LF AG VE+ EVI+ + T S
Sbjct: 71 EDTFSDDAETRSFAP--DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKTTGNSR 128
Query: 69 GFGFVTMSTVEEAEKVVEMFNRYE 92
GF FVTMS+ EAE + FN YE
Sbjct: 129 GFAFVTMSSAAEAEVAAQQFNNYE 152
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
++ VGNL + VD+ L LF + G V ++VI+ RE+ RS GFGFVT S+ +E +
Sbjct: 219 RVHVGNLAWGVDNAALESLFREQGRVVDAKVIYDRESGRSRGFGFVTFSSPDEVNSAIR 277
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+E P + KL+ GNL Y DS +LA + G E+ EV++ R+T RS GF FVTMS+VE+
Sbjct: 105 AESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVED 164
Query: 81 AEKVVEMFNRYETG 94
V+E + E G
Sbjct: 165 CNAVIENLDGSEYG 178
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 6 IGGEESFGDGSEVDYSEPPEDA---------KLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56
+ G E G V++S+ P+ KLFVGNL + V SE L +F + G V +
Sbjct: 172 LDGSEYGGRTLRVNFSDKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGA 231
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
V++ ET RS G+GFV ST E + +E N
Sbjct: 232 RVLYDGETGRSRGYGFVCYSTKAEMDTALESLN 264
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++GNL + DS +LA + + G VE+ EVI+ +E+ RS GF FVTM+T E+AE V+E
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 88 FNRYETG 94
+ ++ G
Sbjct: 61 LDGHDVG 67
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVGNL + VD+ L LF+ G V + V++ RE+ RS GFGFVT S V E + ++
Sbjct: 108 KVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDS 167
Query: 88 FN 89
+
Sbjct: 168 LD 169
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+E P + KL+ GNL Y DS +LA + G E+ EV++ R+T RS GF FVTMS+VE+
Sbjct: 105 AESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVED 164
Query: 81 AEKVVEMFNRYETG 94
V+E + E G
Sbjct: 165 CNAVIENLDGSEYG 178
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 6 IGGEESFGDGSEVDYSEPPEDA---------KLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56
+ G E G V++S+ P+ KLFVGNL + V SE L +F + G V +
Sbjct: 172 LDGSEYGGRTLRVNFSDKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGA 231
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
V++ ET RS G+GFV ST E + +E N
Sbjct: 232 RVLYDGETGRSRGYGFVCYSTKAEMDTALESLN 264
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
E++F DG + P + +LFVGNL + VDS +LA +F AG VE+ EVI+ + T RS
Sbjct: 68 EDTFDDGDDTPSYSP--NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSR 125
Query: 69 GFGFVTMSTVEEAEKVVEMFNRY 91
GFGFVTMS+ E E + N Y
Sbjct: 126 GFGFVTMSSAAEVEAAAQQLNGY 148
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D ++ VGNL + VD+ L LF + G V ++VI+ RE+ RS GFGFVT S+ +E + +
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 86 EMFN 89
+
Sbjct: 255 RTLD 258
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 47/67 (70%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + + S +L+ +F +AG V E+++ R TDRS GF FVTM +VEEA++ + +
Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 169
Query: 88 FNRYETG 94
F+ + G
Sbjct: 170 FDGSQVG 176
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+V NL + + S+ L F +Q G + ++VI+ R + RS GFGF+T S+ E + ++
Sbjct: 213 KLYVANLSWALTSQGLRDAFADQPGFMS-AKVIYDRSSGRSRGFGFITFSSAEAMKSALD 271
Query: 87 MFNRYE 92
N E
Sbjct: 272 TMNEVE 277
>gi|147859670|emb|CAN83111.1| hypothetical protein VITISV_026573 [Vitis vinifera]
Length = 355
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+E P + KL+ GNL Y DS LA + G E+ EV++ R+T RS GF FVTMS+VE+
Sbjct: 60 AESPVNTKLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVED 119
Query: 81 AEKVVEMFNRYETG 94
V+E + E G
Sbjct: 120 CNAVIENLDGSEYG 133
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 47/67 (70%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + + S +L+ +F +AG V E+++ R TDRS GF FVTM +VEEA++ + +
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 88 FNRYETG 94
F+ + G
Sbjct: 175 FDGSQVG 181
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+V NL + + S+ L F +Q G + ++VI+ R + RS GFGF+T S+ E ++
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMS-AKVIYDRSSGRSRGFGFITFSSAEAMNSALD 276
Query: 87 MFNRYE 92
N E
Sbjct: 277 TMNEVE 282
>gi|116747535|ref|YP_844222.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans
MPOB]
gi|116696599|gb|ABK15787.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans
MPOB]
Length = 122
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL + SE+L LF+Q G VE + V+ RE+ RS GFGFV MST EE +K +
Sbjct: 4 KLYVGNLSFQTSSEQLRELFSQVGTVESATVVEDRESGRSRGFGFVEMSTKEEGQKAIAE 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|196230311|ref|ZP_03129174.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196225908|gb|EDY20415.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 185
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK-VVE 86
KL+VGNL YD L+ LFN G V+ +E++ ++ ++S GFGFVTM+TV+EA++ VVE
Sbjct: 99 KLYVGNLSYDATESDLSELFNGVGTVKSAEIVSHKYNEKSKGFGFVTMTTVDEAKRAVVE 158
Query: 87 MFNR 90
+ ++
Sbjct: 159 LHDK 162
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 47/67 (70%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + + S +L+ +F +AG V E+++ R TDRS GF FVTM +VEEA++ + +
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 88 FNRYETG 94
F+ + G
Sbjct: 164 FDGSQVG 170
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+V NL + + S+ L F +Q G + ++VI+ R + RS GFGF+T S+ E + ++
Sbjct: 207 KLYVANLSWALTSQGLRDAFADQPGFMS-AKVIYDRSSGRSRGFGFITFSSAEAMKSALD 265
Query: 87 MFN 89
N
Sbjct: 266 TMN 268
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 42/61 (68%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ KL+ GNL Y+VDS +LA + G E+ EV++ R+T RS GF FVTMSTVE+ V+
Sbjct: 112 NTKLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVI 171
Query: 86 E 86
E
Sbjct: 172 E 172
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V SE L F + G + + V++ ET RS G+GFV +T E E
Sbjct: 200 PETEHKLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEME 259
Query: 83 KVVEMFN 89
+ N
Sbjct: 260 NALVSLN 266
>gi|356537206|ref|XP_003537120.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 298
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
E + S + ++LFVGNL Y + S +LA F +AG V E+++ DRS GF FVTM
Sbjct: 78 EPNASHTNQSSRLFVGNLPYSLLSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMG 137
Query: 77 TVEEAEKVVEMFNRYETG 94
++E+AE+ + MF+ E G
Sbjct: 138 SMEDAERAIRMFDGSEIG 155
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++ GNL + + S+ L F + ++VI+ R + RS G+GFV+ T E+ E +
Sbjct: 188 KIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAALNS 247
Query: 88 FNRYET 93
N E
Sbjct: 248 MNGVEV 253
>gi|406959178|gb|EKD86596.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 42/61 (68%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVG+L + VD KLA LF QAG V ++V+ RET RS GFGFV MST EEA+ V+
Sbjct: 1 MFVGSLPWAVDDAKLAELFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNL 60
Query: 89 N 89
N
Sbjct: 61 N 61
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
++S E + P KL+VGNL DS +L HLF + G VE +EV+ ET S
Sbjct: 84 KDSTRQKPENEEKSPSNRTKLYVGNLPRSCDSAQLTHLFQEFGTVESAEVVRNEETGLSR 143
Query: 69 GFGFVTMSTVEEAEKVVEMF 88
GF FVTMSTV EA+ +E
Sbjct: 144 GFAFVTMSTVIEAKAAIEKL 163
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 2 IGGFIGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61
I F S G+ +E +Y E P +LF GNL + V +E L LF++ G V ++V++
Sbjct: 174 IVNFPAAVLSRGNKTEDEYVETP--YQLFAGNLAWSVKNEILRDLFSEHGTVLGAKVVYN 231
Query: 62 RETDRSTGFGFVTMSTVEEAEKVVEMFN 89
+ FGFV +S+ E E + N
Sbjct: 232 SKGGVPRAFGFVCLSSQSEMEAAIVSLN 259
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 6 IGGEESFGDGSEVDYSEPPED-----AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIF 60
+ G +S DG D + P + KL+VGNL + DS +LA + + G V++ EVI+
Sbjct: 18 VSGVDSVADGGSSDVAAPVAEEEQFETKLYVGNLPWTCDSAQLAEICSDHGTVDVVEVIY 77
Query: 61 YRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETG 94
+ + RS GF FVTM+T E+A+ V+ + + G
Sbjct: 78 DKISGRSRGFAFVTMATPEDAQAVINALDGTDMG 111
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 10 ESFGDGSEVDYSEPPED--AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRS 67
+S D V+ SE P D KLFVGNL + D L F++ G V ++V+F R++ RS
Sbjct: 121 QSQKDKPRVERSERPRDDANKLFVGNLSWGCDEAALYSFFSEYGTVVDAKVVFDRDSGRS 180
Query: 68 TGFGFVTMSTVEEAEKVVEMFNRYE 92
GFGFVTM + A +E + E
Sbjct: 181 RGFGFVTMESAAAANAAIENLDGAE 205
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KL+ GNL Y VDS +LA + G+ E+ EV++ R T +S GF FVTMS++E+ KV+
Sbjct: 101 STKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVI 160
Query: 86 E 86
E
Sbjct: 161 E 161
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V SE L F + G V + VI+ ET +S G+GFV+ ST E E
Sbjct: 189 PETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEME 248
Query: 83 KVVEMFNRYE 92
+E N E
Sbjct: 249 TALETINELE 258
>gi|406873754|gb|EKD23843.1| hypothetical protein ACD_81C00167G0002 [uncultured bacterium]
Length = 111
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VG L Y + L LF+QAG VE + +I + T RS GFGFV M++ +EAEK ++M
Sbjct: 4 KLYVGGLPYSTTQDALNDLFSQAGTVESAMIIIDKMTGRSKGFGFVEMASDDEAEKAIDM 63
Query: 88 FN 89
FN
Sbjct: 64 FN 65
>gi|407005316|gb|EKE21467.1| RNA-binding protein, partial [uncultured bacterium]
Length = 76
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y + L LF QAG VE + +I + T RS GFGFV MS EEA K +EM
Sbjct: 4 KLYVGNLPYTLKDADLNQLFAQAGAVESAVIINDKATGRSKGFGFVEMSADEEATKAIEM 63
Query: 88 FNRYE 92
F+ E
Sbjct: 64 FDGQE 68
>gi|406926747|gb|EKD62896.1| RNA-binding protein [uncultured bacterium]
Length = 134
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ KL+VGNL Y V S++L LF +AG V + VI +++T RS GFGFV M T E A+ +
Sbjct: 2 NKKLYVGNLSYTVTSDELRKLFAEAGTVVDAVVISFKDTGRSKGFGFVEMETEEAAKAAI 61
Query: 86 EMFNRYETG 94
E FN + G
Sbjct: 62 EKFNGSDMG 70
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+E + +LFVGNL + + S +LA LF +AG V E+++ T+RS GF FVTM VE+
Sbjct: 102 AESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVED 161
Query: 81 AEKVVEMFN 89
AE+ + MF+
Sbjct: 162 AEEAIRMFD 170
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++ GNL +D+ S+ L F + + ++V++ R +S G+GFV+ T E+ E +
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 88 FNRYE 92
N E
Sbjct: 268 MNGVE 272
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 22 EPPEDA---KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
E PE+ KL+VGN+ V +++LA +F G VE +EV+F + T RS FGFVTMST
Sbjct: 62 EAPEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTP 121
Query: 79 EEAEKVVEMFNRYETG 94
EEA +E N E G
Sbjct: 122 EEANAAIESLNETEVG 137
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 1 EIGGF---IGGEESFGDGSEVDYSEP-PEDA------KLFVGNLRYDVDSEKLAHLFNQA 50
E+GG + ESF +D S P PE K++VGNL V +E L + F++
Sbjct: 135 EVGGRKIKVNVTESFLPN--IDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSEK 192
Query: 51 GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
G V + V T +S G+GFVT S+ EE + V FN E
Sbjct: 193 GEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAE 234
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
E++F DG + P + +LFVG+L + VDS +LA +F AG VE+ EVI+ + T RS
Sbjct: 68 EDTFDDGDDTPSYSP--NQRLFVGSLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSR 125
Query: 69 GFGFVTMSTVEEAEKVVEMFNRY 91
GFGFVTMS+ E E + N Y
Sbjct: 126 GFGFVTMSSAAEVEAAAQQLNGY 148
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D ++ VGNL + VD+ L LF + G V ++VI+ RE+ RS GFGFVT S+ +E + +
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 86 EMFN 89
+
Sbjct: 255 RTLD 258
>gi|125563035|gb|EAZ08415.1| hypothetical protein OsI_30679 [Oryza sativa Indica Group]
Length = 226
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 22 EPPEDA---KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
E PE+ KL+VGN+ V +++LA +F G VE +EV+F + T RS FGFVTMST
Sbjct: 62 EAPEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTP 121
Query: 79 EEAEKVVEMFNRYETG 94
EEA +E N E G
Sbjct: 122 EEANAAIESLNETEVG 137
>gi|406993247|gb|EKE12437.1| Glycine-rich RNA-binding protein GRP1A [uncultured bacterium]
Length = 86
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 43/66 (65%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVGNL ++V E L LF AG V + VI R T RS GFGFVTM + EA+ VE
Sbjct: 3 SKLFVGNLAWEVTVEDLKALFAGAGSVVDAAVITDRMTGRSRGFGFVTMGSDAEAQTAVE 62
Query: 87 MFNRYE 92
FN+Y+
Sbjct: 63 KFNQYD 68
>gi|42521960|ref|NP_967340.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|39574490|emb|CAE77994.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
Length = 120
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 41/67 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y VD E L F Q G V+ ++VI RET RS GFGFV MS A++ +E
Sbjct: 4 KLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQAIER 63
Query: 88 FNRYETG 94
N E G
Sbjct: 64 GNGIELG 70
>gi|406997918|gb|EKE15908.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 93
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 42/67 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VG L Y E L F+QAG VE + +I R + RS GFGFV MST E A+K +EM
Sbjct: 4 KLYVGGLPYSTTEESLGEHFSQAGAVESANIITDRMSGRSKGFGFVEMSTEEGAQKAIEM 63
Query: 88 FNRYETG 94
F+ E G
Sbjct: 64 FHGKEFG 70
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 41/72 (56%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PP KL+VGNL D +L LF + G VE EV+ ET S GF FVTMSTV+EA+
Sbjct: 90 PPRRTKLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAK 149
Query: 83 KVVEMFNRYETG 94
+E + G
Sbjct: 150 SAIEKLQGSDLG 161
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
E D S +LFVGNL + V E L LF+Q G V ++VI+ + FGFV +S
Sbjct: 179 ETDDSYIETPYQLFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLS 238
Query: 77 TVEEAEKVV 85
+ E E +
Sbjct: 239 SQSEMEDAI 247
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++V NL V ++ L+ LF+Q G V + V++ R+ RS +GFV S+ E E +
Sbjct: 307 VYVSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAAL 366
Query: 89 NRYE 92
++ E
Sbjct: 367 DKKE 370
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 41/68 (60%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D E KL+ GNL Y VDS KLA L G E+ EV++ R+T +S GF FVTMS +
Sbjct: 105 DSDESFASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCI 164
Query: 79 EEAEKVVE 86
E+ V+E
Sbjct: 165 EDCNAVIE 172
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 6 IGGEESFGDGSEVDYSEPPE---------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56
+ G+E G V++S P+ + KLFVGNL + V +E L F + G V +
Sbjct: 174 LDGKEYLGRTLRVNFSNKPKAKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGA 233
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
V++ ET RS G+GFV ST EE E + N E
Sbjct: 234 RVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVE 269
>gi|171913967|ref|ZP_02929437.1| RNP-1 like RNA-binding protein [Verrucomicrobium spinosum DSM 4136]
Length = 238
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL YD L LFN +G V+ +EV+ T RS GF FVTM +V+EA+K V+
Sbjct: 128 RLYVGNLSYDASESDLFELFNGSGRVKNAEVVVNNRTQRSKGFAFVTMMSVDEAKKAVDD 187
Query: 88 FN 89
N
Sbjct: 188 LN 189
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGN+ V +++L +F G VE +EV++ + T+RS FGFVTMSTVEEA VE
Sbjct: 68 KLYVGNVPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTVEEANAAVEA 127
Query: 88 FNRYETG 94
N E G
Sbjct: 128 LNGTEVG 134
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL +V +E L + F++ G + + V T +S G+GFVT S+ EE E V
Sbjct: 167 KVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 226
Query: 88 FNRYE 92
FN E
Sbjct: 227 FNNAE 231
>gi|359806610|ref|NP_001241528.1| uncharacterized protein LOC100820203 [Glycine max]
gi|255645445|gb|ACU23218.1| unknown [Glycine max]
gi|255645775|gb|ACU23380.1| unknown [Glycine max]
Length = 289
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+ GNL Y VDS KLA L G E+ EV++ R+T +S GF FVTMS +E+ V+E
Sbjct: 118 KLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIE 176
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 8 GEESFGDGSEVDYSEPPE---------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEV 58
G+E G V++S P+ + KLFVGNL + V +E L F + G V + V
Sbjct: 180 GKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARV 239
Query: 59 IFYRETDRSTGFGFVTMST 77
++ ET RS G+GFV ST
Sbjct: 240 LYDGETGRSRGYGFVCYST 258
>gi|406956570|gb|EKD84644.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVG+L + VD KL +F QAG V ++V+ RET RS GFGFV MST EEA+ V+
Sbjct: 1 MFVGSLPWAVDDAKLGEIFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNL 60
Query: 89 N 89
N
Sbjct: 61 N 61
>gi|86607423|ref|YP_476186.1| RNA-binding protein [Synechococcus sp. JA-3-3Ab]
gi|86555965|gb|ABD00923.1| putative RNA-binding protein [Synechococcus sp. JA-3-3Ab]
Length = 181
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL +VD + L LF+ AG V ++VI R T + GFGFVT+ST E+A++ +E
Sbjct: 4 RLYVGNLPEEVDRQALEKLFSSAGEVISTKVIRDRRTGKCRGFGFVTVSTEEQAQQYIEK 63
Query: 88 FNRYETGCSHGFG 100
FN H FG
Sbjct: 64 FN------GHSFG 70
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 19 DYSEP----PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74
+ SEP P K+++GNL + DS +LA + + G VE+ EVI+ + T RS GF F T
Sbjct: 99 EISEPLHDIPAGTKVYLGNLPFSCDSAELAGIIQEHGSVEMVEVIYDQNTGRSRGFAFAT 158
Query: 75 MSTVEEAEKVVEMFNRYETG 94
MS+VE+A +VE + + G
Sbjct: 159 MSSVEDANALVENLDGSQYG 178
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++++GNL +DV+ E L +F++ G + ++++F RET RS GFGF+T ST EAE V
Sbjct: 217 RVYIGNLSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVAS 276
Query: 88 FN 89
N
Sbjct: 277 LN 278
>gi|110739563|dbj|BAF01690.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
Length = 84
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 29/92 (31%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL +DVD+ +L LF++ G V + V++ RET RS GFGFVTMS V+E
Sbjct: 1 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE-------- 52
Query: 89 NRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LN+AI+ALDGQ
Sbjct: 53 ---------------------LNEAISALDGQ 63
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+ GNL Y VDS KLA L G E+ EV++ R++ +S GF FVTMS +E+ V+E
Sbjct: 111 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTMSCIEDCNAVIE 169
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 6 IGGEESFGDGSEVDYSEPPE---------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56
+ G+E G V++S P+ + KLFVGNL + V +E L F + G V +
Sbjct: 171 LDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGA 230
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
V++ ET RS G+GFV ST E E V N E
Sbjct: 231 RVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVE 266
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+ GNL Y+ DS LA + V E+ EV++ R T RS GF FVTMST+E+ E+V++
Sbjct: 135 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIK 193
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V E L F + G V + V++ ET RS G+GFV ST EE +
Sbjct: 221 PETEHKLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMD 280
Query: 83 KVVEMFN 89
+ +E N
Sbjct: 281 QAIETLN 287
>gi|255075095|ref|XP_002501222.1| predicted protein [Micromonas sp. RCC299]
gi|226516486|gb|ACO62480.1| predicted protein [Micromonas sp. RCC299]
Length = 199
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++ GNL + +D L L + G VE + +I RET+RS GFGFVTMSTV EAE+VV
Sbjct: 120 KVYFGNLSWGMDHLDLQDLCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEVVNQ 179
Query: 88 FN 89
N
Sbjct: 180 LN 181
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E KL+VGNL + V ++ LA +FNQ G +++ V+ T RS GFGFVT+ A+
Sbjct: 15 EGVKLYVGNLSWGVTNDSLADVFNQYGASDVT-VVTDMNTGRSRGFGFVTVPDQAVADAC 73
Query: 85 VEMFN 89
+ +
Sbjct: 74 IAALD 78
>gi|430741539|ref|YP_007200668.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430013259|gb|AGA24973.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 119
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y+V+ L LF+Q G V+ +++I R+T+RS GFGFV M T +A+ ++
Sbjct: 4 KLYVGNLTYNVNESDLEALFSQFGTVQSAQIIVDRDTNRSKGFGFVEMDTDAQAQAAIQG 63
Query: 88 FNRYE 92
N ++
Sbjct: 64 LNGHD 68
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+ GNL Y+ DS +LA + E+ EV++ R T RS GF FVTMST+E+ E+V++
Sbjct: 148 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIK 206
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V SE L +F + G V + V++ ET RS G+GFV ST EE +
Sbjct: 234 PETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMD 293
Query: 83 KVVEMFN 89
+ + N
Sbjct: 294 EALSSLN 300
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+ GNL Y+ DS LA + V E+ EV++ R T RS GF FVTMST+E+ E+V++
Sbjct: 251 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIK 309
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V E L F + G V + V++ ET RS G+GFV ST EE +
Sbjct: 337 PETEHKLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMD 396
Query: 83 KVVEMFNRYE 92
+ +E N E
Sbjct: 397 QAIETLNGTE 406
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+ GNL Y+ DS +LA + E+ EV++ R T RS GF FVTMST+E+ E+V++
Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIK 204
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V SE L +F + G V + V++ ET RS G+GFV ST EE +
Sbjct: 232 PETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMD 291
Query: 83 KVVEMFN 89
+ + N
Sbjct: 292 EALSSLN 298
>gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein [Vicia faba var. minor]
Length = 289
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+ GNL Y VDS KLA L + G E+ EV++ R+T +S GF F TM+ VE+ + V+E
Sbjct: 118 KLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDCKAVIE 176
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 6 IGGEESFGDGSEVDYSEPPE---------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56
+ G+E G V++S+ P+ + KLF+GNL + V SE L F + G V +
Sbjct: 178 LDGKEFMGRTLRVNFSDKPKAKESLYPETEYKLFIGNLSWKVTSEILTEAFQEHGTVVGA 237
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
VI+ ET S G+GFV+ + E E + + N E
Sbjct: 238 RVIYDGETGNSRGYGFVSYANKSEMEAALTIMNDVE 273
>gi|388500434|gb|AFK38283.1| unknown [Lotus japonicus]
Length = 273
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ KL+ GNL Y VDS +LA L + G E+ EV++ R++ +S GF FVTMS VE+ V+
Sbjct: 100 NTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVI 159
Query: 86 E 86
E
Sbjct: 160 E 160
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 6 IGGEESFGDGSEVDYSEPPE---------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56
+ G+E G V+ S+ P+ + KLFVGNL + V SE L +F + G V +
Sbjct: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGA 221
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
V++ ET RS G+GFV S E E + N E
Sbjct: 222 RVLYDGETGRSRGYGFVCYSKRSELETALISLNNVE 257
>gi|86608306|ref|YP_477068.1| RNA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556848|gb|ABD01805.1| putative RNA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 175
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL +VD + L LF AG V ++VI R+T + GFGFVT++T E+A++ +E
Sbjct: 4 RLYVGNLPEEVDRQALEKLFRSAGEVISTKVIRDRKTGKCRGFGFVTVNTEEQAQQYIEK 63
Query: 88 FNRYETGCSHGFGFFTM 104
FN H FG +
Sbjct: 64 FN------GHSFGDVNL 74
>gi|357439793|ref|XP_003590174.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355479222|gb|AES60425.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 387
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 6 IGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD 65
IGGE +EVD KL+ GNL Y VDS LA L + G E+ EV++ R+T
Sbjct: 203 IGGETV----AEVDTR-----TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTG 253
Query: 66 RSTGFGFVTMSTVEEAEKVVEMFNRYE 92
+S GF FVTMS VE+ V++ + E
Sbjct: 254 KSRGFAFVTMSCVEDCNAVIQNLDGKE 280
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 6 IGGEESFGDGSEVDYSEPPE---------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56
+ G+E G V++S+ P+ + KLFVGNL + V SE L F + G V +
Sbjct: 276 LDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGA 335
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
V+F ET +S G+GFV+ +T E + + + + E
Sbjct: 336 RVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVE 371
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVV-EISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
++++VGNL ++ DSE+LA + QAG++ + EV+ RET RS GFG+VT+++++ A+ V
Sbjct: 1 SRIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAV 60
Query: 86 EMFN 89
+ +
Sbjct: 61 QKLD 64
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+F+GNL + VD L F G V +++++ R+T RS GFGFVT+S+ +EA++ V+
Sbjct: 98 KVFIGNLPWGVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKS 157
Query: 88 FN 89
+
Sbjct: 158 LD 159
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella
moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella
moellendorffii]
Length = 177
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVV-EISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
++++VGNL ++ DSE+LA + QAG++ + EV+ RET RS GFG+VT+++++ A+ V
Sbjct: 1 SRIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAV 60
Query: 86 EMFN 89
+ +
Sbjct: 61 QKLD 64
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 13/90 (14%)
Query: 13 GDGSEVDYSEPPEDA-------------KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVI 59
G + YS+P + A K+F+GNL + VD L F G V +++
Sbjct: 70 GRALKASYSQPYKKAGKEGPVEVAASHTKVFIGNLPWGVDDGSLEEFFRAHGKVVEVKIV 129
Query: 60 FYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
+ R+T RS GFGFVT+S+ +EA++ V+ +
Sbjct: 130 YDRDTGRSRGFGFVTLSSPKEADEAVKSLD 159
>gi|347756146|ref|YP_004863709.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
gi|347588663|gb|AEP13192.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
Length = 112
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL + SE L F++AG VE ++V+ R+T+RS GFGFV ++ E+ + +EM
Sbjct: 2 KLYVGNLSFQTTSEDLRDHFSKAGTVESAQVVEDRDTNRSRGFGFVEFTSTEDGNRAIEM 61
Query: 88 FN 89
F+
Sbjct: 62 FH 63
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ +L+VGN+ +E+LA +F + G VE +EV++ + T RS F FVTMSTVE+A+ +
Sbjct: 72 ERRLYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQAAI 131
Query: 86 EMFNRYETG 94
E N E G
Sbjct: 132 EKMNGTEIG 140
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL V +E L F + G V ++V ET +S G+GFV+ S+ + E +
Sbjct: 173 KVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISA 232
Query: 88 FN 89
FN
Sbjct: 233 FN 234
>gi|418530958|ref|ZP_13096878.1| RNA recognition motif-containing protein [Comamonas testosteroni
ATCC 11996]
gi|371452037|gb|EHN65069.1| RNA recognition motif-containing protein [Comamonas testosteroni
ATCC 11996]
Length = 83
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+ L+V NL Y VDS+ L F G V +++I RET RS GFGFV M T E+A+K +E
Sbjct: 3 SNLYVTNLSYTVDSDALRAHFGSCGDVVAADIIMDRETGRSRGFGFVEMGTQEQAQKAIE 62
Query: 87 MFN 89
N
Sbjct: 63 TLN 65
>gi|428224588|ref|YP_007108685.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
gi|427984489|gb|AFY65633.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
Length = 150
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 46/65 (70%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL D+D ++L F +AG + +VI R+T++ GFGF+T+ + EEA++V+E
Sbjct: 4 RLYVGNLPKDLDRQELEAAFAEAGELLAIKVITDRKTNKCRGFGFITVKSDEEADEVIEK 63
Query: 88 FNRYE 92
FN Y+
Sbjct: 64 FNGYQ 68
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+ GNL Y+ DS LA + E+ EV++ R T RS GF FVTMST+E+ E+V++
Sbjct: 134 KLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 193
Query: 88 FN 89
+
Sbjct: 194 LD 195
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V E L F Q G V + V++ ET RS G+GFV ST EE +
Sbjct: 220 PETEHKLFVGNLSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMD 279
Query: 83 KVVEMFN 89
+ +E N
Sbjct: 280 QAIETLN 286
>gi|357457429|ref|XP_003598995.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355488043|gb|AES69246.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 447
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ KLFVG + Y+ D + L+ F++ G V + +I RE+ RS GFGFVT +TVEEA +
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 86 EMF 88
+
Sbjct: 103 QAL 105
>gi|406950086|gb|EKD80418.1| cp31AHv protein [uncultured bacterium]
Length = 122
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 39/65 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG+L + + L F+QAG V + VI R T RS GFGFV MS+ EEA+K V
Sbjct: 4 KLFVGSLAWATTDDSLQAFFSQAGTVSSARVITDRATGRSKGFGFVEMSSDEEAQKAVAE 63
Query: 88 FNRYE 92
N E
Sbjct: 64 LNGKE 68
>gi|115477932|ref|NP_001062561.1| Os09g0106200 [Oryza sativa Japonica Group]
gi|113630794|dbj|BAF24475.1| Os09g0106200, partial [Oryza sativa Japonica Group]
Length = 68
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEV 58
+Y EPP +AK++VGNL Y++DSE+LA LF Q GVVE+SEV
Sbjct: 27 EYVEPPAEAKVYVGNLPYNIDSERLAQLFEQEGVVEVSEV 66
>gi|375144786|ref|YP_005007227.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361058832|gb|AEV97823.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 102
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
L+V NL + V+ + LA LF+Q G V ++VI RET RS GFGFV MS+ EEA K ++
Sbjct: 3 LYVSNLGFQVNDDDLAKLFSQYGQVSSAKVIMDRETGRSRGFGFVEMSSDEEARKAIK 60
>gi|299529236|ref|ZP_07042680.1| RNA recognition motif-containing protein [Comamonas testosteroni
S44]
gi|298722760|gb|EFI63673.1| RNA recognition motif-containing protein [Comamonas testosteroni
S44]
Length = 83
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+ L+V NL Y +DSE L F G V ++VI R+T RS GFGFV M T E+A+K +E
Sbjct: 3 SNLYVTNLGYSIDSEALRTHFGCCGDVVAADVIIDRDTGRSRGFGFVEMGTQEQAQKAIE 62
Query: 87 MFN 89
N
Sbjct: 63 TLN 65
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
KL+VGNL + D E L F+Q G V+ +EV+ RE+ RS GF FVTM++ + AEK
Sbjct: 91 KLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAFVTMASPDAAEKA 147
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + +D L LF + G V + V+ R++ RS GF FV +ST EEA + +
Sbjct: 205 RLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANEAMAN 264
Query: 88 FNRYETG 94
+ E G
Sbjct: 265 LDGEEIG 271
>gi|59802525|gb|AAX07506.1| unknown [Gemmata sp. Wa1-1]
Length = 163
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E+L +F G V+ ++VI R+T RS GFGFV M++ +EA+ +
Sbjct: 65 KLYVGNLGYGVTDEQLRGMFGPYGSVQTAQVIMDRDTGRSKGFGFVEMNSDQEAQAAIAG 124
Query: 88 FN 89
N
Sbjct: 125 MN 126
>gi|388493590|gb|AFK34861.1| unknown [Medicago truncatula]
Length = 285
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 6 IGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD 65
IGGE +EVD KL+ GNL Y VDS LA L + G E+ EV++ R+T
Sbjct: 101 IGGETV----AEVD-----TRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTG 151
Query: 66 RSTGFGFVTMSTVEEAEKVVE 86
+S GF FVTMS VE+ V++
Sbjct: 152 KSRGFAFVTMSCVEDCNAVIQ 172
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 6 IGGEESFGDGSEVDYSEPPE---------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56
+ G+E G V++S+ P+ + KLFVGNL + V E F + G V +
Sbjct: 174 LDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTFESFTQAFQEHGTVVGA 233
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
V+F ET + G+GFV+ +T E + + + + E
Sbjct: 234 RVLFDGETGKFRGYGFVSYATKSEMDTALAIMDNVE 269
>gi|217073820|gb|ACJ85270.1| unknown [Medicago truncatula]
Length = 285
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 6 IGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD 65
IGGE +EVD KL+ GNL Y VDS LA L + G E+ EV++ R+T
Sbjct: 101 IGGETV----AEVD-----TRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTG 151
Query: 66 RSTGFGFVTMSTVEEAEKVVE 86
+S GF FVTMS VE+ V++
Sbjct: 152 KSRGFAFVTMSCVEDCNAVIQ 172
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 6 IGGEESFGDGSEVDYSEPPE---------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56
+ G+E G V++S+ P+ + KLFVGNL + V SE L F + G V +
Sbjct: 174 LDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGA 233
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
V+F ET +S G+GFV+ +T E + + + + E
Sbjct: 234 RVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVE 269
>gi|115470657|ref|NP_001058927.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|34394882|dbj|BAC84331.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113610463|dbj|BAF20841.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|125557292|gb|EAZ02828.1| hypothetical protein OsI_24955 [Oryza sativa Indica Group]
gi|215695203|dbj|BAG90394.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740788|dbj|BAG96944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 348
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +LFVGNL Y + S +++ F++AG V+ ++I+ + TDRS GF FVTM+T EEA
Sbjct: 116 EPGRLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATA 175
Query: 85 VEMFN 89
++MFN
Sbjct: 176 IQMFN 180
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + V ++ L F Q G+++ + VIF R++ RS GFGFV+ T E+A+ +E
Sbjct: 221 KIYAGNLGWGVRADALRAAFEGQPGLLD-ARVIFERDSGRSRGFGFVSFRTAEDAQAALE 279
Query: 87 MFN 89
+
Sbjct: 280 ALD 282
>gi|75275079|sp|P82277.1|RRP2_SPIOL RecName: Full=30S ribosomal protein 2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 2;
Short=PSRP-2; Flags: Precursor
gi|7578881|gb|AAF64167.1|AF240462_1 plastid-specific ribosomal protein 2 precursor [Spinacia oleracea]
Length = 260
Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 46/67 (68%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGN+ ++++++L + + G +EI+EV++ + + RS FGFVTM TVE+A V+E
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144
Query: 88 FNRYETG 94
N E G
Sbjct: 145 LNDTEIG 151
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+++GNL V +E L F++ G V ++V T +S GFGFV+ S+ EE E ++
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244
Query: 88 FN 89
N
Sbjct: 245 LN 246
>gi|328952775|ref|YP_004370109.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM
11109]
gi|328453099|gb|AEB08928.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM
11109]
Length = 97
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL +++ E+L LF++AG V +++I R+T + GFGFV M T E K + M
Sbjct: 4 KLYVGNLSFEMTEEQLGTLFSEAGPVTSAKIITDRQTGQPRGFGFVEMETKSEGRKAISM 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|283779286|ref|YP_003370041.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
gi|283437739|gb|ADB16181.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
Length = 100
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL YDV+++ L LF+Q G V ++VI RET RS GFGFV M A ++
Sbjct: 4 KLYVGNLSYDVNNQSLEELFSQFGAVRSAQVIQDRETGRSKGFGFVEMQDDNAARSAIQA 63
Query: 88 FN 89
+
Sbjct: 64 LH 65
>gi|430744757|ref|YP_007203886.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430016477|gb|AGA28191.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 114
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y+V+ L LF G V+ +++I R+T+RS GFGFV M T +A+ ++
Sbjct: 4 KLYVGNLTYNVNESDLEALFTPFGTVQSAQIIIDRDTNRSKGFGFVEMDTDAQAQAAIQG 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|449436259|ref|XP_004135910.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
gi|449489082|ref|XP_004158209.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
Length = 251
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++GN+ +V++E+L + + G VE +EV++ + + RS F FVTM TVE+A +E
Sbjct: 75 KLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 134
Query: 88 FNRYETG 94
N E G
Sbjct: 135 LNETEVG 141
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGN+ V +E L + F++ G V ++V T +S+G+GFVT S+ EE + +
Sbjct: 176 KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISS 235
Query: 88 FN 89
FN
Sbjct: 236 FN 237
>gi|413921822|gb|AFW61754.1| hypothetical protein ZEAMMB73_478558 [Zea mays]
Length = 131
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + VD +L LF++ G V ++V++ RET RS GFGFV+M + EE
Sbjct: 48 RAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEE------- 100
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LNDAI+ALDGQ
Sbjct: 101 ----------------------LNDAISALDGQ 111
>gi|426402318|ref|YP_007021289.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|425858986|gb|AFY00022.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
Length = 104
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL ++VD ++L +F + G V+ VI RET RS GF FV MST EA +E
Sbjct: 4 KIYVGNLSFNVDQDQLNQVFAEFGTVDTVNVITDRETGRSKGFAFVEMSTETEARAAIEK 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|339501141|ref|YP_004699176.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
gi|338835490|gb|AEJ20668.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
Length = 116
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KL+VGNL Y+ + L +LF+ G V +++IF RET S GFGFV MST EEA +
Sbjct: 25 KLYVGNLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEASAAI 82
>gi|328772428|gb|EGF82466.1| hypothetical protein BATDEDRAFT_86274 [Batrachochytrium
dendrobatidis JAM81]
Length = 586
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 7/66 (10%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD---RSTGFGFVTMSTVEEAEKVV 85
LFVGNL + + + L LF QAG V +S + TD RS GFG VTM+T E+A K +
Sbjct: 282 LFVGNLPFIITWQDLKDLFRQAGDVAVSHI----PTDGSGRSRGFGIVTMTTPEDAAKAI 337
Query: 86 EMFNRY 91
+MFNRY
Sbjct: 338 QMFNRY 343
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 4 GFIGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE 63
G I E +G+ SE +Y+ LFVGNL Y V ++L LF G+ +E++
Sbjct: 393 GHIRHEHGYGNRSE-NYAMKNSGITLFVGNLVYSVIWQELKDLFRSVGIPTKAEIV-TSS 450
Query: 64 TDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
+ RS GFGFVTM+T E+A K ++ N E
Sbjct: 451 SGRSRGFGFVTMATQEDANKAIKELNGTE 479
Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQ-AGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+P ++F+GNL + + S+ L +FN+ AGV + + RS GFG V T E
Sbjct: 14 QPVAGRQVFIGNLPFTMQSKDLKDVFNKTAGVTSVK--VMSHGNGRSRGFGLVYCDTPEI 71
Query: 81 AEKVVEMFNRYE 92
A+ ++ F E
Sbjct: 72 AQSIITQFQGLE 83
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 9 EESFGDGSEVDYSEPPEDA-----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE 63
EE G+ D S P A KL+ GNL Y+ DS +LA + + E+ EV++ R
Sbjct: 93 EEGAAVGASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRT 152
Query: 64 TDRSTGFGFVTMSTVEEAEKVVEMFN 89
T RS GF FVTM+TV++ E V++ +
Sbjct: 153 TGRSRGFAFVTMTTVQDCELVIKNLD 178
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V SE L F + G V + V++ ET RS G+GFV ST EE +
Sbjct: 203 PETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMD 262
Query: 83 KVVEMFNRYE 92
+ + N E
Sbjct: 263 EALSSLNGME 272
>gi|428216940|ref|YP_007101405.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
gi|427988722|gb|AFY68977.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
Length = 154
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL ++D ++L +FN++G +VI R+T R GFGFVT++T E A+ V++
Sbjct: 4 RLYVGNLPAELDRQELEKIFNESGETFSLKVITDRKTGRCRGFGFVTVNTPEAADTVIDK 63
Query: 88 FNRYE 92
FN Y+
Sbjct: 64 FNGYD 68
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 9 EESFGDGSEVDYSEPPEDA-----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE 63
EE G+ D S P A KL+ GNL Y+ DS +LA + + E+ EV++ R
Sbjct: 93 EEGAAVGASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRT 152
Query: 64 TDRSTGFGFVTMSTVEEAEKVVEMFN 89
T RS GF FVTM+TV++ E V++ +
Sbjct: 153 TGRSRGFAFVTMTTVQDCELVIKNLD 178
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V SE L F + G V + V++ ET RS G+GFV ST EE +
Sbjct: 203 PETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMD 262
Query: 83 KVVEMFNRYE 92
+ + N E
Sbjct: 263 EALSSLNGME 272
>gi|328767903|gb|EGF77951.1| hypothetical protein BATDEDRAFT_27077 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 21 SEPPEDA---KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
S PE A K+FVGNL + D+ LA F+Q G V S V+ RET RS GFGFVT S+
Sbjct: 2 SRRPEAAPGTKVFVGNLSWGTDNNSLADAFSQFGEVVDSIVLKDRETGRSRGFGFVTFSS 61
Query: 78 VEEAEKVVEMFN 89
E A V+ N
Sbjct: 62 PESASAAVDAMN 73
>gi|15218972|ref|NP_176208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana]
gi|4249379|gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein
(RNP1) from Phaseolus vulgaris [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
gi|222423361|dbj|BAH19654.1| AT1G60000 [Arabidopsis thaliana]
gi|332195527|gb|AEE33648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 258
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 9 EESFGDGSEVDYSEPPE-DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRS 67
EE DG+ P + KL+ GNL Y+VDS LA + E+ EV++ R+T +S
Sbjct: 66 EEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQS 125
Query: 68 TGFGFVTMSTVEEAEKVVE 86
GF FVTMS VE+ +++
Sbjct: 126 RGFAFVTMSNVEDCNIIID 144
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 6 IGGEESFGDGSEVDYSEPPE----------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEI 55
+ G E G +V++++ P+ + KLFVGNL + V SE LA F + G V
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVG 205
Query: 56 SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
+ V+F +T RS G+GFV S+ E E +E + +E
Sbjct: 206 ARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFE 242
>gi|221066816|ref|ZP_03542921.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220711839|gb|EED67207.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 83
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L+V NL Y +D E L F+ G V ++VI RET RS GFGFV MST E+A+K ++
Sbjct: 5 LYVTNLGYSIDGEALRAHFSGCGEVISADVISDRETGRSRGFGFVEMSTPEQAQKAIQTL 64
Query: 89 N 89
N
Sbjct: 65 N 65
>gi|375108277|ref|ZP_09754538.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374669008|gb|EHR73793.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 167
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F+Q G V ++V+ RET RS GFGFV M T EA+ +
Sbjct: 4 KLYVGNLAYSVRDESLQAAFSQFGTVTSAKVMMDRETGRSKGFGFVEMGTGAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|333993552|ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
gi|333734416|gb|AEF80365.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
Length = 100
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y + L +LF+Q G V S++IF RE+ S GFGF+ MST EEA +
Sbjct: 4 KLYVGNLSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITG 63
Query: 88 FNRYE 92
N +E
Sbjct: 64 TNGHE 68
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 46/68 (67%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K++VGNL + DS +LA + +Q G V++ EVI+ + + RS GF FVTM++ ++A+ ++
Sbjct: 23 SKVYVGNLPWTCDSAQLAEICSQHGTVDVVEVIYDKLSGRSRGFAFVTMASHDDAQALIN 82
Query: 87 MFNRYETG 94
+ + G
Sbjct: 83 ALDGSDMG 90
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVGN+ + D + LF+ G V +++++ R++ RS GFGFVTM V +A+ +E
Sbjct: 128 KLFVGNIPWGCDEAAMTSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTMEKVGDAQTAMEN 187
Query: 88 FNRYE 92
+ E
Sbjct: 188 LDGTE 192
>gi|406983427|gb|EKE04629.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 96
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLF+GNL + E L L + G V+ ++I R+T RS GFGFV M+T E+AE V+E
Sbjct: 2 KLFIGNLNFKTSEEDLMELLKEYGEVKSLQIIKDRDTGRSKGFGFVEMATKEQAESVMEN 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|307105079|gb|EFN53330.1| hypothetical protein CHLNCDRAFT_137048 [Chlorella variabilis]
Length = 382
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PP+ ++FV N+ +D E LA F QAG V + ++ R+T +S GFGFV + EEA
Sbjct: 122 PPKPTRVFVNNISWDTADEVLAEHFGQAGSVTSARIVRKRDTGQSQGFGFVEFESAEEAS 181
Query: 83 KVVEMFN 89
+E +
Sbjct: 182 AAIERLH 188
>gi|297837519|ref|XP_002886641.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
gi|297332482|gb|EFH62900.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 22 EPPE--DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+PP + KL+ GNL Y+VDS LA + E+ EV++ R+T +S GF FVTMS VE
Sbjct: 72 DPPAAINTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 131
Query: 80 EAEKVVE 86
+ +++
Sbjct: 132 DCNIIID 138
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 6 IGGEESFGDGSEVDYSEPPE----------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEI 55
+ G E G +V++++ P+ + KLFVGNL + V SE LA F + G V
Sbjct: 140 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAEAFRECGDVVG 199
Query: 56 SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
+ V++ +T RS G+GFV S+ E E +E + +E
Sbjct: 200 ARVVYDGDTGRSRGYGFVCYSSKAEMETALESLDGFE 236
>gi|426198367|gb|EKV48293.1| hypothetical protein AGABI2DRAFT_142473 [Agaricus bisporus var.
bisporus H97]
Length = 559
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
PE +FVG L + VD+++LA F++ G V + V R T RS GFG+V ST + EK
Sbjct: 305 PETLSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNTGRSRGFGYVHFSTADAVEK 364
Query: 84 VVEMFNRYE 92
++M N YE
Sbjct: 365 ALKM-NGYE 372
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P + LF+GNL + + + L F+ V I + RET + GFG+V + VE+A+K
Sbjct: 405 PPSSTLFIGNLPFSITEDGLWSYFDGHSVKTI-RLPTDRETGQLKGFGYVELENVEDAKK 463
Query: 84 VVEMFNRYE 92
E + E
Sbjct: 464 AFEAISGQE 472
>gi|42522915|ref|NP_968295.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|426403373|ref|YP_007022344.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|39574111|emb|CAE79288.1| putative RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|425860041|gb|AFY01077.1| putative RNA-binding protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 116
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL Y +D + LA F + G VE + ++ RET RS GF FV MST +EA +
Sbjct: 4 KIYVGNLSYSLDDQSLADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATAIAK 63
Query: 88 FNRYE 92
N E
Sbjct: 64 LNGVE 68
>gi|328858559|gb|EGG07671.1| hypothetical protein MELLADRAFT_71659 [Melampsora larici-populina
98AG31]
Length = 163
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVGNL + D+ L FNQ G V + V+ RET RS GFGF+T S ++A+ ++
Sbjct: 6 KLFVGNLAWSTDTNSLTQAFNQYGEVVDAIVMQDRETGRSRGFGFITFSNQDQAQAAIDA 65
Query: 88 FN 89
N
Sbjct: 66 LN 67
>gi|409079870|gb|EKM80231.1| hypothetical protein AGABI1DRAFT_73218 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 568
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
PE +FVG L + VD+++LA F++ G V + V R T RS GFG+V ST + EK
Sbjct: 305 PETLSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNTGRSRGFGYVHFSTADAVEK 364
Query: 84 VVEMFNRYE 92
++M N YE
Sbjct: 365 ALKM-NGYE 372
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P + LF+GNL + + + L F+ V I + RET + GFG+V + VE+A+K
Sbjct: 405 PPSSTLFIGNLPFSITEDGLWSYFDGHSVKTI-RLPTDRETGQLKGFGYVELENVEDAKK 463
Query: 84 VVEMFNRYE 92
E + E
Sbjct: 464 AFEAISGQE 472
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+ GNL Y+ DS +LA + + E+ EV++ R T RS GF FVTM+TV++ E V++
Sbjct: 125 KLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRITGRSRGFAFVTMTTVQDCELVIKN 184
Query: 88 FN 89
+
Sbjct: 185 LD 186
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V SE L F + G V + V++ ET RS G+GFV ST EE +
Sbjct: 211 PETEHKLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMD 270
Query: 83 KVVEMFN 89
+ + N
Sbjct: 271 EAISSLN 277
>gi|303286031|ref|XP_003062305.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455822|gb|EEH53124.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 227
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++ GNL + +D L L + G V S +I RET RS GFGFVTMS+ E+AEKVV
Sbjct: 147 KVYFGNLSWGMDHLDLQDLCGEYGEVADSRLITDRETGRSRGFGFVTMSSAEQAEKVVNG 206
Query: 88 FN 89
N
Sbjct: 207 LN 208
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 28 KLFVGNLRYDVDSEKLAHLF---NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
KL+VGNL + VD L +F + +G+ IS++ T RS GFGFV + + E AEK
Sbjct: 44 KLYVGNLSWGVDDSMLTDVFAEYDASGIAVISDM----NTGRSRGFGFVEVPSQEIAEKA 99
Query: 85 V 85
+
Sbjct: 100 I 100
>gi|171056877|ref|YP_001789226.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
gi|170774322|gb|ACB32461.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
Length = 157
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F+Q G V ++V+ RET RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLAYSVRDEDLNEAFSQFGAVNSAKVMMDRETGRSKGFGFVEMGSDPEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|42521942|ref|NP_967322.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|39574472|emb|CAE77976.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
Length = 104
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL Y+VD ++L LF G V+ +I R+T RS GF FV MS+ EA ++
Sbjct: 4 KIYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAAIDK 63
Query: 88 FNRYETG 94
N + G
Sbjct: 64 LNGMDLG 70
>gi|284108895|ref|ZP_06386469.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp.
WGA-A3]
gi|283829840|gb|EFC34132.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp.
WGA-A3]
Length = 90
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ K++VGNL Y ++L LF Q G V+ + V+ R T RS GFGFV M + EEA + +
Sbjct: 2 NQKIYVGNLSYSTTDQELQDLFAQHGTVQSANVVTDRYTGRSRGFGFVEMGSGEEAGQAI 61
Query: 86 EMFN 89
E N
Sbjct: 62 EALN 65
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGN+ V +E+LA + + G VE +EV++ + + RS F FVTM TVE+A V+E
Sbjct: 71 RLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEK 130
Query: 88 FNRYETG 94
N E G
Sbjct: 131 LNGTEIG 137
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL V ++ L + F++ G V ++V T +S+G+GFVT S+ E+ E +
Sbjct: 171 KVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISS 230
Query: 88 FN 89
FN
Sbjct: 231 FN 232
>gi|118487510|gb|ABK95582.1| unknown [Populus trichocarpa]
Length = 198
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 38 VDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETG 94
+ S +LA +F +AG V +EVI R TDRS GFGFVTM +VEEA++ + MFN + G
Sbjct: 1 MTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGSQVG 57
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVT 74
K++ GNL + + SE L F NQ G++ ++VI+ R+T RS GFGFV+
Sbjct: 94 KIYAGNLGWRLTSEGLGDAFANQPGLLS-AKVIYERDTGRSRGFGFVS 140
>gi|392578419|gb|EIW71547.1| hypothetical protein TREMEDRAFT_56482 [Tremella mesenterica DSM
1558]
Length = 223
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ + L F Q G V S V+ RET RS GFGFVT ST EEAE ++
Sbjct: 4 AKVYVGNLSWNTTDDTLRDAFMQFGQVLDSIVMKDRETGRSRGFGFVTFSTAEEAEISIQ 63
Query: 87 MFN 89
N
Sbjct: 64 QMN 66
>gi|333999539|ref|YP_004532151.1| RNA-binding protein [Treponema primitia ZAS-2]
gi|333738431|gb|AEF83921.1| RNA-binding protein [Treponema primitia ZAS-2]
Length = 89
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y+ + L LF+Q G VE ++I R+T S GFGFV MST EEA+ +
Sbjct: 4 KLYVGNLSYNTYEDNLRTLFSQYGTVESVKIITDRDTGNSKGFGFVEMSTEEEAQAAIRG 63
Query: 88 FN 89
N
Sbjct: 64 TN 65
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGN+ +DS +LA + + G VE +EV++ + + RS F FVTM TVE+A +E
Sbjct: 71 RLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 130
Query: 88 FNRYETG 94
N E G
Sbjct: 131 LNGTEIG 137
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFN-QAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++VGNL V ++ L F+ + G V ++V T +S+GFGFV+ S+ E+ E +
Sbjct: 171 KVYVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAIS 230
Query: 87 MFN 89
N
Sbjct: 231 SCN 233
>gi|384915859|ref|ZP_10016064.1| RNA-binding protein, RRM domain (modular protein)
[Methylacidiphilum fumariolicum SolV]
gi|384526721|emb|CCG91935.1| RNA-binding protein, RRM domain (modular protein)
[Methylacidiphilum fumariolicum SolV]
Length = 255
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y++ L +F + G ++ E+I R T+R+ GFGFV M+ ++ A K V +
Sbjct: 170 KLYVGNLPYNLTDSDLFEIFAKVGPIKNVEIIRDRRTNRTKGFGFVEMADLDSARKAVTI 229
Query: 88 FNRYE 92
NR E
Sbjct: 230 LNRIE 234
>gi|356519124|ref|XP_003528224.1| PREDICTED: uncharacterized protein LOC100801928 [Glycine max]
Length = 656
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S P +++LF+G + Y +D++ L + +Q G V + +I RET R GFGF+T S V+E
Sbjct: 37 SNAP-NSRLFIGGVSYSIDAQSLGEICSQYGQVVDARIIMDRETGRHRGFGFITYSNVDE 95
Query: 81 AEKVVEMF 88
A + ++
Sbjct: 96 ASRALQAL 103
>gi|337281471|ref|YP_004620943.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis
TTB310]
gi|334732548|gb|AEG94924.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 128
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y + F+Q G V ++V+ R+T RS GFGFV MS+ EA+ +E
Sbjct: 4 KLYVGNLPYSYRDSDMEQAFSQFGTVSSAKVMMERDTGRSKGFGFVEMSSPAEAQAAIEG 63
Query: 88 FNRYETG 94
N + G
Sbjct: 64 MNGQQIG 70
>gi|388566786|ref|ZP_10153228.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
gi|388265964|gb|EIK91512.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
Length = 133
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F+ G V ++V+ RET RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYTVRDEDLQQAFSAFGAVNSAKVMMERETGRSKGFGFVEMGSDSEAQSAIQG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|374812290|ref|ZP_09716027.1| RNP-1 like RNA-binding protein [Treponema primitia ZAS-1]
Length = 99
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KL+VGNL Y+ + L +LF++ G V S++IF RET S GFGF+ M T EEA +
Sbjct: 4 KLYVGNLSYNTTEDGLRNLFSEFGSVASSKIIFDRETGNSKGFGFIEMGTDEEASAAI 61
>gi|359481379|ref|XP_003632613.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 2 [Vitis
vinifera]
Length = 254
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+++VGNL + VD L LF++ G V + VI+ RET RS GFGFVT ++ EE + +E
Sbjct: 171 RIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIE 229
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 53/146 (36%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE---------------------- 63
D KLFVGNL ++VDS LA LF QAG VE+ E + R+
Sbjct: 89 DLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEELEGRQLRVNSGPPPARRENSNFRGENS 148
Query: 64 --------------------TDR------STGFGFVTMSTV-EEAEKVVE---MFNRYET 93
T+R S G + + T+ E KV E +++R ET
Sbjct: 149 NFRGENTNFRGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDR-ET 207
Query: 94 GCSHGFGFFTMSDESKLNDAIAALDG 119
G S GFGF T + ++N AI +LDG
Sbjct: 208 GRSRGFGFVTYNSAEEVNRAIESLDG 233
>gi|168054234|ref|XP_001779537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669018|gb|EDQ55613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+F+GNL + D++ L +F++ G V ++V++ R+T +S GFGFVTMS E V+
Sbjct: 115 KMFIGNLSWSCDADALVQVFSEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQN 174
Query: 88 FN 89
+
Sbjct: 175 LD 176
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL + DS +LA + VE +V++ +++ RS GF FVTMST E A+ V++
Sbjct: 1 KLYVGNLPWTCDSAQLAEICGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSVIDR 60
Query: 88 FN 89
+
Sbjct: 61 LD 62
>gi|156388911|ref|XP_001634736.1| predicted protein [Nematostella vectensis]
gi|156221822|gb|EDO42673.1| predicted protein [Nematostella vectensis]
Length = 313
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
+ S+ P L+V N+ YD + E + LF Q G+V ++++ + + GF FVTM+T
Sbjct: 225 NKSQAPPGCTLYVYNIGYDANQEGITALFAQCGIVNKVDIMWDWQRQQCKGFCFVTMATQ 284
Query: 79 EEAEKVVEMFN 89
EEA+ ++ N
Sbjct: 285 EEAQNAIQTLN 295
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V + D+ + +F + +++ ++ + S GFGFV +T E+A+K ++
Sbjct: 7 LIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKL 66
Query: 89 NRYETG 94
N + G
Sbjct: 67 NGFTIG 72
>gi|395328131|gb|EJF60525.1| hypothetical protein DICSQDRAFT_181243 [Dichomitus squalens
LYAD-421 SS1]
Length = 1772
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 21 SEPPEDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
S PP D + LFVGNL Y V + L LF +AG V ++V + +RS G+G V ++T
Sbjct: 855 SNPPRDTRTQLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPD-NRSRGYGTVLLATA 913
Query: 79 EEAEKVVEMFNRY 91
E+A + V+MFN Y
Sbjct: 914 EDAGRAVDMFNGY 926
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
LFVGNL + + + L LF QAG V+ ++V + RS GFG V+ S +AE+ V MF
Sbjct: 1038 LFVGNLPFHIQWQDLKDLFRQAGAVQRADVALGAD-GRSRGFGTVSFSNEADAERAVRMF 1096
Query: 89 NRYE 92
N YE
Sbjct: 1097 NGYE 1100
>gi|255646669|gb|ACU23808.1| unknown [Glycine max]
Length = 125
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 6 IGGEESFGDGSEVDYSEPPE---------DAKLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56
+ G+E G V++S P+ + KLFVGNL + V +E L F + G V +
Sbjct: 14 LNGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGA 73
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
V++ ET RS G+GFV ST E E V N E
Sbjct: 74 RVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVE 109
>gi|121606987|ref|YP_984316.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120595956|gb|ABM39395.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 152
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F Q G V ++V+ R+T RS GFGFV M++ EA+ +
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMASDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|299531903|ref|ZP_07045303.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
gi|298720078|gb|EFI61035.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
Length = 162
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F+Q G V + V+ R+T RS GFGFV M++ EA+ ++
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|264680852|ref|YP_003280762.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
gi|262211368|gb|ACY35466.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
Length = 164
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F+Q G V + V+ R+T RS GFGFV M++ EA+ ++
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|418528344|ref|ZP_13094294.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
gi|371454720|gb|EHN67722.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
Length = 163
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F+Q G V + V+ R+T RS GFGFV M++ EA+ ++
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|242036137|ref|XP_002465463.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
gi|241919317|gb|EER92461.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
Length = 169
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%)
Query: 12 FGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFG 71
FGDG+EV P KLFV L EKL F G + ++V+ R + RS GFG
Sbjct: 48 FGDGTEVANVPPLTTPKLFVSGLSRLTTDEKLQGAFAPFGRILEAKVVTDRVSGRSKGFG 107
Query: 72 FVTMSTVEEAEKVVEMFN 89
FV +T+EEAEK + N
Sbjct: 108 FVRYATIEEAEKARQEMN 125
>gi|308807591|ref|XP_003081106.1| Ps16 protein (ISS) [Ostreococcus tauri]
gi|116059568|emb|CAL55275.1| Ps16 protein (ISS) [Ostreococcus tauri]
Length = 1094
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ GNL + +D L L ++ G VE S +I R+T RS GFGFVTMS EA++V
Sbjct: 1013 EGRRVYFGNLSWGMDQYDLQDLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEV 1072
Query: 85 VEMFN 89
V N
Sbjct: 1073 VAQLN 1077
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ +++VGNL + V E LA LF++ V + S V+ RET RS GF FV+M+ E+ E+
Sbjct: 912 DEHRVYVGNLSWGVTDESLAELFSEFDVRDAS-VMKDRETGRSRGFAFVSMNNEEDVERA 970
Query: 85 VEMFNRYE 92
N E
Sbjct: 971 SAALNGRE 978
>gi|42407940|dbj|BAD09079.1| nucleic acid-binding protein-like [Oryza sativa Japonica Group]
Length = 131
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ +VGNL + VD +L LF++ G V + V++ RE+ RS GFGFV+M++ EE
Sbjct: 48 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEE------- 100
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
L+DAI+ALDGQ
Sbjct: 101 ----------------------LDDAISALDGQ 111
>gi|398802241|ref|ZP_10561457.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398100710|gb|EJL90943.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 148
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|430745770|ref|YP_007204899.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430017490|gb|AGA29204.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 133
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V + L LF + G V+ ++VI R+T RS GFGFV M + EA+ ++
Sbjct: 5 KLYVGNLAYTVSNTDLEQLFGEFGTVQSAQVIQDRDTGRSKGFGFVEMDSDAEAQAAIDG 64
Query: 88 FNRYETG 94
+ E G
Sbjct: 65 LHDQEHG 71
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGN+ V +++LA + + G VE +EV++ + + RS F FVTM TVE+A V+E
Sbjct: 71 RLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEK 130
Query: 88 FNRYETG 94
N E G
Sbjct: 131 LNGTELG 137
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL V ++ L + F++ G V ++V T +S+G+GFVT + E+ E +
Sbjct: 171 KVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISS 230
Query: 88 FN 89
FN
Sbjct: 231 FN 232
>gi|221069836|ref|ZP_03545941.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220714859|gb|EED70227.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 158
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V + V+ R+T RS GFGFV M++ EA+ ++
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFGQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|388522459|gb|AFK49291.1| unknown [Lotus japonicus]
Length = 162
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTM 75
+D +L+VGNL Y + S +L +F +AG V EV++ R TDRS GF FVTM
Sbjct: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTM 159
>gi|428307295|ref|YP_007144120.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428248830|gb|AFZ14610.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 177
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 28 KLFVGNL-RYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L+VGNL + DV+ + L +F +AG ++VI R+T + GFGFVT++T E+A++++E
Sbjct: 4 RLYVGNLPKEDVERQDLQAIFAEAGDFVSTKVIKDRKTGKCRGFGFVTVNTDEQADQIIE 63
Query: 87 MFNRY 91
FN Y
Sbjct: 64 QFNGY 68
>gi|356511826|ref|XP_003524623.1| PREDICTED: uncharacterized protein LOC100782808 [Glycine max]
Length = 274
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLF+G + Y D + L F++ G V + +I RET RS GFGF+T ++VEEA ++
Sbjct: 43 KLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQA 102
Query: 88 FN 89
+
Sbjct: 103 LD 104
>gi|409047996|gb|EKM57474.1| hypothetical protein PHACADRAFT_91047 [Phanerochaete carnosa
HHB-10118-sp]
Length = 229
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 1 EIGGFIGGEESFGDGSEVDYSEPPEDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEV 58
EI I S + PP D + LFVGNL Y V + L LF +AG V ++V
Sbjct: 10 EIDAVIQAATSASPHAAYSAVRPPRDTRTQLFVGNLPYRVRWQDLKDLFRRAGTVLRADV 69
Query: 59 IFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
+ +RS G+G V +++ E+A + ++MFN
Sbjct: 70 SLAPD-NRSRGYGTVLLASAEDAGRAIDMFN 99
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S PP L + + + L LF QAG + ++V + RS GFG V+ +T +
Sbjct: 167 SRPP------TTTLPFHIQWQDLKDLFRQAGTILRADVALGPD-GRSRGFGTVSFATEGD 219
Query: 81 AEKVVEMFN 89
AE+ V+MFN
Sbjct: 220 AERAVKMFN 228
>gi|397781445|ref|YP_006545918.1| RNA recognition motif-containing protein [Methanoculleus
bourgensis MS2]
gi|396939947|emb|CCJ37202.1| RNA recognition motif-containing protein [Methanoculleus
bourgensis MS2]
Length = 86
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +KL+VGNL Y V+ E+L LF Q G V VI GFGFV MS+ EEAEK
Sbjct: 2 ESSKLYVGNLTYSVNEEQLKELFAQYGTVNDVRVI------ERKGFGFVEMSSPEEAEKA 55
Query: 85 VEMFN 89
E N
Sbjct: 56 KEALN 60
>gi|331241775|ref|XP_003333535.1| hypothetical protein PGTG_14957 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312525|gb|EFP89116.1| small subunit ribosomal protein S19 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 206
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 37/72 (51%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S PP KLFVGNL + DS L F Q G V + V+ RET RS GFGF+T
Sbjct: 26 SSPPGGNKLFVGNLAWTTDSGSLKSAFGQFGDVVDAIVMQDRETGRSRGFGFITFKEEAA 85
Query: 81 AEKVVEMFNRYE 92
A +E N E
Sbjct: 86 APGAIEALNGQE 97
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +D+ E L +F G ++ ++I ET+RS G+GF+T E+A+K +E
Sbjct: 366 RLYVGSLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQ 425
Query: 88 FNRYE 92
N +E
Sbjct: 426 LNGFE 430
>gi|359806697|ref|NP_001241034.1| uncharacterized protein LOC100799124 [Glycine max]
gi|255645259|gb|ACU23127.1| unknown [Glycine max]
Length = 275
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLF+G + Y D + L F++ G V + +I RET RS GFGF+T ++VEEA ++
Sbjct: 43 KLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQA 102
Query: 88 FN 89
+
Sbjct: 103 LD 104
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 35/56 (62%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
LFVGNL ++VD LA F G V + VI RE+ RS GFG+V +T EEAEK
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKA 296
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
PE LFVGNL +D D + + F++ V+ + +E+ R GFG+VT ++VE+A+
Sbjct: 339 PESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKS 398
Query: 84 VVEMFN 89
E N
Sbjct: 399 AFEQLN 404
>gi|399108266|gb|AFP20557.1| RNA-binding protein [uncultured bacterium]
Length = 114
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ KL+VGNL Y +S +L LF G V+ +VI R T +S GFGFV M + +EA+ +
Sbjct: 2 NNKLYVGNLNYRTNSAELEQLFAAYGTVKSVQVISDRHTGQSKGFGFVEMGSAQEAQAAM 61
Query: 86 EMFN 89
N
Sbjct: 62 NALN 65
>gi|319762031|ref|YP_004125968.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330826150|ref|YP_004389453.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
gi|317116592|gb|ADU99080.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329311522|gb|AEB85937.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
Length = 102
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+L+VGNL Y V E L F+Q G V ++V+ R+T RS GFGFV M++ EA++ +
Sbjct: 4 RLYVGNLAYSVRDESLVQQFSQFGAVTSAKVMMERDTGRSKGFGFVEMASGAEAQEAI 61
>gi|260221788|emb|CBA30701.1| Glycine-rich RNA-binding protein GRP1A [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 149
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y E L F+Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 10 KLYVGNLPYSFRDEDLQQAFSQHGSVSSAKVMMERDTGRSKGFGFVEMGSDAEAQTAISA 69
Query: 88 FN 89
N
Sbjct: 70 MN 71
>gi|121596409|ref|YP_988305.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608489|gb|ABM44229.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 149
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V + L F+Q G V ++V+ R+T RS GFGFV M + EA++ +
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|45544646|ref|NP_956311.1| cold inducible RNA binding protein isoform 2 [Danio rerio]
gi|28856196|gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|182891172|gb|AAI64022.1| Cirbp protein [Danio rerio]
Length = 184
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLF+G L YD + L F++ G + +VI RETDRS GFGFVT E+A+
Sbjct: 2 SDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKD 61
Query: 84 VVEMFN 89
+ N
Sbjct: 62 AMAAMN 67
>gi|383760540|ref|YP_005439526.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
gi|381381210|dbj|BAL98027.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
Length = 161
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V + L F Q G V ++V+ RET RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLAYSVRDDSLQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|406835833|ref|ZP_11095427.1| RNP-1 like RNA-binding protein [Schlesneria paludicola DSM 18645]
Length = 104
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V +L LF G V+ ++VI RET RS GFGFV MS +A+ +
Sbjct: 4 KLYVGNLSYGVTDSQLEQLFAAHGAVQSAQVIMDRETGRSKGFGFVEMSNAADADAAITA 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|297806641|ref|XP_002871204.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
gi|297317041|gb|EFH47463.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG L + + L+ F++ G V ++++ R +DRS GFGFVT ++V+EA+K +
Sbjct: 34 SKLFVGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASVDEAQKALM 93
Query: 87 MFN 89
FN
Sbjct: 94 EFN 96
>gi|406929710|gb|EKD65230.1| RNA-binding protein [uncultured bacterium]
Length = 95
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LFVG L Y E+L F+QAG V ++ I R + + GFGFV M+T EEA+K ++
Sbjct: 4 RLFVGRLSYGTTDEQLEQHFSQAGKVISAKAIVDRYSGQGKGFGFVEMATAEEAQKAIQQ 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|409076926|gb|EKM77294.1| hypothetical protein AGABI1DRAFT_130386 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 853
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 15 GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74
GSEV + LFVGNL + + L LF QAG + ++V + RS GFG V
Sbjct: 200 GSEVLNASSSSCRNLFVGNLPFHCQWQDLKDLFRQAGTIMRADVALGPD-GRSRGFGTVV 258
Query: 75 MSTVEEAEKVVEMFNRYE 92
+T ++AE+ V+MFN YE
Sbjct: 259 FATEQDAERAVKMFNGYE 276
Score = 41.6 bits (96), Expect = 0.092, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 21 SEPPEDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
S PP+D + LF L Y V + L LF +AG V ++V + +RS G+G V ++T
Sbjct: 57 SGPPKDTRTQLF---LPYRVRWQDLKDLFRRAGTVLRADVSLGPD-NRSRGYGTVLLATA 112
Query: 79 EEAEKVVEMFNRY 91
E+A + ++MF+ Y
Sbjct: 113 EDAGRAIDMFHGY 125
>gi|298244419|ref|ZP_06968225.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297551900|gb|EFH85765.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 106
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VG L Y + L LF Q G V + VI RET RS GFGFV MS+ +EA +E
Sbjct: 2 RIYVGGLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARAAIEQ 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|222112647|ref|YP_002554911.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732091|gb|ACM34911.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 155
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V + L F+Q G V ++V+ R+T RS GFGFV M + EA++ +
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|426195272|gb|EKV45202.1| hypothetical protein AGABI2DRAFT_120172 [Agaricus bisporus var.
bisporus H97]
Length = 853
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 15 GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74
GSEV + LFVGNL + + L LF QAG + ++V + RS GFG V
Sbjct: 200 GSEVLNASSSSCRNLFVGNLPFHCQWQDLKDLFRQAGTIMRADVALGPD-GRSRGFGTVV 258
Query: 75 MSTVEEAEKVVEMFNRYE 92
+T ++AE+ V+MFN YE
Sbjct: 259 FATEQDAERAVKMFNGYE 276
Score = 41.6 bits (96), Expect = 0.092, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 21 SEPPEDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
S PP+D + LF L Y V + L LF +AG V ++V + +RS G+G V ++T
Sbjct: 57 SGPPKDTRTQLF---LPYRVRWQDLKDLFRRAGTVLRADVSLGPD-NRSRGYGTVLLATA 112
Query: 79 EEAEKVVEMFNRY 91
E+A + ++MF+ Y
Sbjct: 113 EDAGRAIDMFHGY 125
>gi|120610816|ref|YP_970494.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120589280|gb|ABM32720.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++VGNL Y V E L F + G V S+++ RET RS GFGFV MS+ E+A+ +
Sbjct: 3 CKIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAIT 62
Query: 87 MFN 89
N
Sbjct: 63 GLN 65
>gi|319765042|ref|YP_004128979.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330827234|ref|YP_004390537.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
gi|317119603|gb|ADV02092.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329312606|gb|AEB87021.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
Length = 144
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V + L F Q GVV ++V+ R+T RS GFGFV M + +A+ +
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFGQFGVVTSAKVMMERDTGRSKGFGFVEMGSDADAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|113478076|ref|YP_724137.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110169124|gb|ABG53664.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 97
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL YDV E L+ +F + G V+ ++ RET R GFGFV MS+ EE +K ++
Sbjct: 3 IYVGNLSYDVTQEDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSEEEEQKAIDAL 62
Query: 89 NRYE 92
+ E
Sbjct: 63 DSAE 66
>gi|423225541|ref|ZP_17212008.1| hypothetical protein HMPREF1062_04194 [Bacteroides
cellulosilyticus CL02T12C19]
gi|392632469|gb|EIY26429.1| hypothetical protein HMPREF1062_04194 [Bacteroides
cellulosilyticus CL02T12C19]
Length = 129
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++V NL ++ +S+ L LF+Q G V + +I RET RS GFGFV M EE +K ++
Sbjct: 2 NIYVANLSWNTNSDSLQELFSQYGEVTSAYIINDRETGRSRGFGFVEMPNDEEGQKAIDA 61
Query: 88 FNRYE 92
N E
Sbjct: 62 LNETE 66
>gi|224539725|ref|ZP_03680264.1| hypothetical protein BACCELL_04634 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518648|gb|EEF87753.1| hypothetical protein BACCELL_04634 [Bacteroides cellulosilyticus
DSM 14838]
Length = 130
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++V NL ++ +S+ L LF+Q G V + +I RET RS GFGFV M EE +K ++
Sbjct: 2 NIYVANLSWNTNSDSLQELFSQYGEVTSAYIINDRETGRSRGFGFVEMPNDEEGQKAIDA 61
Query: 88 FNRYE 92
N E
Sbjct: 62 LNETE 66
>gi|365153971|ref|ZP_09350405.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
gi|158605004|gb|EAT99377.3| 31 kDa ribonucleoprotein, (RNA-binding proteinRNP-T) (RNA-binding
protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)
[Campylobacter concisus 13826]
gi|363650683|gb|EHL89770.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
Length = 81
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y +L F Q G V ++++ RETDRS GFGFV M E +K ++
Sbjct: 3 IYVGNLSYRTTEAELKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAIDAL 62
Query: 89 NRYETG 94
N E G
Sbjct: 63 NEKELG 68
>gi|121604834|ref|YP_982163.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120593803|gb|ABM37242.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 132
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|333917516|ref|YP_004491248.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|333747716|gb|AEF92893.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 179
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F+Q G V + V+ R+T RS GFGFV M + EA+ V+
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|189465920|ref|ZP_03014705.1| hypothetical protein BACINT_02283 [Bacteroides intestinalis DSM
17393]
gi|189434184|gb|EDV03169.1| hypothetical protein BACINT_02283 [Bacteroides intestinalis DSM
17393]
Length = 128
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++V NL ++ +S+ L LF+Q G V + +I RET RS GFGFV M EE +K ++
Sbjct: 2 NIYVANLSWNTNSDSLQELFSQYGEVTSAYIINDRETGRSRGFGFVEMPNDEEGQKAIDT 61
Query: 88 FNRYE 92
N E
Sbjct: 62 LNETE 66
>gi|160901478|ref|YP_001567060.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|160367062|gb|ABX38675.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
Length = 176
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F+Q G V + V+ R+T RS GFGFV M + EA+ V+
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|392397594|ref|YP_006434195.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
gi|390528672|gb|AFM04402.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
Length = 97
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L+V NL Y + E+L +F++ GVV +++I RET RS GFGFV M + E+ E +E
Sbjct: 3 LYVSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIEEL 62
Query: 89 N 89
N
Sbjct: 63 N 63
>gi|392396499|ref|YP_006433100.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
gi|390527577|gb|AFM03307.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
Length = 95
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L+V NL Y + E+L +F++ GVV +++I RET RS GFGFV M + E+ E +E
Sbjct: 3 LYVSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIEEL 62
Query: 89 N 89
N
Sbjct: 63 N 63
>gi|196232841|ref|ZP_03131691.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196223040|gb|EDY17560.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 107
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL +D L F +AG V + ++ + T +S GFGFVTMS+ EEA+K +++
Sbjct: 4 KLYVGNLSFDTTEMDLQDTFAEAGTVSEATLMQDKFTGKSRGFGFVTMSSSEEAQKAIDL 63
Query: 88 FN 89
F+
Sbjct: 64 FH 65
>gi|412986787|emb|CCO15213.1| predicted protein [Bathycoccus prasinos]
Length = 260
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 6 IGGEESFGDGSEVDYSEPPEDA----------------KLFVGNLRYDVDSEKLAHLFNQ 49
+ + FG V S PPE+ K++ GNL + +D L L +
Sbjct: 134 LNDSDQFGRQMRVVISLPPEERPAREQRPKRNWDADGRKVYFGNLSWGMDHLDLQDLCAE 193
Query: 50 AGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
G V+ S +I RET RS GFGFVTMS+ +EAE VV N
Sbjct: 194 FGNVDESRLITDRETGRSRGFGFVTMSSEKEAEDVVAQLN 233
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++GNL +D+D + L LF+Q + ++ R T RS GFGF T+ + E A+ +
Sbjct: 75 KLYIGNLSWDMDDQALNDLFSQYQASDCV-IVTDRNTGRSRGFGFATVPSQEMADSAIAA 133
Query: 88 FN 89
N
Sbjct: 134 LN 135
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|121595278|ref|YP_987174.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|222111562|ref|YP_002553826.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|120607358|gb|ABM43098.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|221731006|gb|ACM33826.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 102
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ +L+VGNL Y V E L F+Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 2 NNRLYVGNLAYSVRDESLHQQFSQFGSVTSAKVMMERDTGRSKGFGFVEMGSDSEAQDAI 61
Query: 86 EMFN 89
N
Sbjct: 62 NGLN 65
>gi|428211720|ref|YP_007084864.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
gi|428000101|gb|AFY80944.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
Length = 181
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L++GNL +VD ++L +F +AG ++VI R+T + GFGFVT+ E+A++ +E
Sbjct: 4 RLYIGNLPKEVDRKELQDVFAEAGDSVTTKVITDRKTGKCRGFGFVTVKNDEQADEFIEK 63
Query: 88 FNRY 91
FN Y
Sbjct: 64 FNGY 67
>gi|425765484|gb|EKV04163.1| hypothetical protein PDIP_88470 [Penicillium digitatum Pd1]
gi|425778342|gb|EKV16473.1| hypothetical protein PDIG_20660 [Penicillium digitatum PHI26]
Length = 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L ++ D L F + GVVE + V+ R+T RS GFGFV ST EEA +
Sbjct: 2 SKLFIGGLSWNTDDNSLRQRFEEFGVVEDATVVKDRDTGRSRGFGFVRFSTDEEATAAMN 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 AMNNQE 67
>gi|326507746|dbj|BAJ86616.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 192
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD-RSTGFGFVTMSTVE 79
S P E +FVGNL + V S L LF V+ EVIF+ T RS G+GFV+ S+ E
Sbjct: 81 SAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKE 140
Query: 80 EAEKVVEMFN 89
EAE + FN
Sbjct: 141 EAEAAISTFN 150
>gi|440804413|gb|ELR25290.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 146
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLFVG L + D L F Q G V ++VI R+T +S GFGFVT S+ +EAE
Sbjct: 3 AKLFVGGLSWSTDDNSLRSAFEQHGEVIDAKVILDRDTGKSRGFGFVTFSSADEAEAAKG 62
Query: 87 MFNRYE 92
N+ +
Sbjct: 63 ALNQTD 68
>gi|255544262|ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547691|gb|EEF49184.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 256
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L++GN+ VD+++L + + G VE +EV++ + + RS F FVTM TVE+A V+E
Sbjct: 81 RLYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDANAVIEK 140
Query: 88 FNRYETG 94
N + G
Sbjct: 141 LNGTQIG 147
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 7 GGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR 66
G+ SF E + + P K++VGNL V SE L + F++ G V ++V T +
Sbjct: 162 SGDLSFLQLEESQFVDSPH--KVYVGNLAKTVTSEILKNFFSEKGKVLSAKVSRVPGTSK 219
Query: 67 STGFGFVTMSTVEEAEKVVEMFN 89
S+G+GFV+ S E+ E + FN
Sbjct: 220 SSGYGFVSFSEEEDVEAAISSFN 242
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 22 EPPED---AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
E PE+ KL+VGN+ V +++L +F G V ++V++ + + RS FGFVTMS+V
Sbjct: 61 EAPEELATRKLYVGNIPRTVTNDELRAMFADHGTVLRADVMYDKYSGRSRRFGFVTMSSV 120
Query: 79 EEAEKVVEMFNRYETG 94
EEA +E N E G
Sbjct: 121 EEANAAIESLNETEVG 136
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 1 EIGGF---IGGEESFGDGSEVDYSEP-PEDA------KLFVGNLRYDVDSEKLAHLFNQA 50
E+GG + ESF +D S P PE A K++VGNL V +E L + F++
Sbjct: 134 EVGGRKIKVNVTESFLPN--IDPSAPEPEPAFVDSQYKVYVGNLAKTVTTEVLKNFFSEK 191
Query: 51 GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
G V + V T +S G+GFVT S+ EE E V FN E
Sbjct: 192 GEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNNTE 233
>gi|337281472|ref|YP_004620944.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis
TTB310]
gi|334732549|gb|AEG94925.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 159
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F+Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFSQFGAVSSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|302036839|ref|YP_003797161.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|190343253|gb|ACE75641.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|300604903|emb|CBK41236.1| RNA-binding protein [Candidatus Nitrospira defluvii]
Length = 107
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VG L Y +L++LF+ G VE + VI + T +S GFGFV MST EEA+ +
Sbjct: 4 KLYVGGLPYAATESQLSNLFSAHGTVESARVITDKFTGQSRGFGFVEMSTAEEAKAAITA 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 22 EPPED---AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
E PE+ KL+VGN+ V +++L+ +F G V +EV++ + + RS FGFVTMST
Sbjct: 61 EAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTA 120
Query: 79 EEAEKVVEMFNRYETG 94
EE +E N E G
Sbjct: 121 EEVAAAIESLNDTEVG 136
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL V +E L + F++ G V + V T +S G+GFVT S+ EE E V
Sbjct: 169 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVST 228
Query: 88 FNRYE 92
FN E
Sbjct: 229 FNNTE 233
>gi|367020140|ref|XP_003659355.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
gi|347006622|gb|AEO54110.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
Length = 534
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
PE LFVGNL + D + ++ FN+A V+ + +E+ R GF +VT S+VE+A+K
Sbjct: 398 PESDTLFVGNLPFSADEDSVSKFFNKAAKVQSLRIPTDQESGRPKGFAYVTFSSVEDAKK 457
Query: 84 VVEMFN 89
E N
Sbjct: 458 AFETLN 463
>gi|395005503|ref|ZP_10389380.1| RRM domain-containing RNA-binding protein, partial [Acidovorax
sp. CF316]
gi|394316556|gb|EJE53277.1| RRM domain-containing RNA-binding protein, partial [Acidovorax
sp. CF316]
Length = 110
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAING 63
Query: 88 FNRYETG 94
N G
Sbjct: 64 MNGQPLG 70
>gi|121583453|ref|YP_973884.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120596707|gb|ABM40142.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 150
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F Q G V ++V+ R+T RS GFGFV M+ +A+ +
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|410924411|ref|XP_003975675.1| PREDICTED: cold-inducible RNA-binding protein-like [Takifugu
rubripes]
Length = 170
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLF+G L ++ + E LA F + G +E +VI +ET RS GFGFV +VE+A+
Sbjct: 2 SDEGKLFIGGLSFETNEESLAEAFGKYGTIEKVDVIRDKETGRSRGFGFVKYESVEDAKD 61
Query: 84 VVEMFN 89
+ N
Sbjct: 62 AMTAMN 67
>gi|168988195|gb|ACA35266.1| nuclear transport family protein [Cucumis sativus]
Length = 565
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVGNL + V SE L F + G V + VI+ ET +S G+GFV+ ST E E
Sbjct: 21 PETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEME 80
Query: 83 KVVEMFNRYE 92
+E N E
Sbjct: 81 TALETINELE 90
>gi|424843086|ref|ZP_18267711.1| RRM domain-containing RNA-binding protein [Saprospira grandis DSM
2844]
gi|395321284|gb|EJF54205.1| RRM domain-containing RNA-binding protein [Saprospira grandis DSM
2844]
Length = 126
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV L + SE+L LF Q G V+ +++I RETDRS GFGFV M E+ + ++
Sbjct: 3 IFVAKLNFRTTSEELEELFAQFGTVDSAKIIMDRETDRSKGFGFVEMPDEEDGQAAIDAL 62
Query: 89 NRYE 92
N E
Sbjct: 63 NETE 66
>gi|379728946|ref|YP_005321142.1| rnp-1 like RNA-binding protein [Saprospira grandis str. Lewin]
gi|378574557|gb|AFC23558.1| rnp-1 like RNA-binding protein [Saprospira grandis str. Lewin]
Length = 122
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV L + SE+L LF Q G V+ +++I RETDRS GFGFV M E+ + ++
Sbjct: 3 IFVAKLNFRTTSEELEELFAQFGTVDSAKIIMDRETDRSKGFGFVEMPDEEDGQAAIDAL 62
Query: 89 NRYE 92
N E
Sbjct: 63 NETE 66
>gi|121583148|ref|YP_973589.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120596410|gb|ABM39847.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 148
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F Q G V ++V+ R+T RS GFGFV M+ +A+ +
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGTVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|388858327|emb|CCF48115.1| related to glycine-rich RNA-binding protein [Ustilago hordei]
Length = 193
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ + LAH F+ G + V+ RET RS GFGFVT +T EA+ +
Sbjct: 3 AKVYVGNLSWNTTDDSLAHAFSAYGQLTDYIVMKDRETGRSRGFGFVTFATQGEADAAIA 62
Query: 87 MFNRYE 92
N E
Sbjct: 63 ALNEQE 68
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V + L F + G V ++V+ R+T RS GFGFV M + EA+ +E
Sbjct: 4 KLYVGNLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|406831764|ref|ZP_11091358.1| RNP-1 like RNA-binding protein [Schlesneria paludicola DSM 18645]
Length = 122
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y+ ++ L +F Q G V ++++ R+T RS GFGFV M AE +
Sbjct: 4 KLYVGNLSYNATNQTLEQMFAQHGEVRSAQIVTDRDTGRSKGFGFVEMGDSRSAEAAISA 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|331241781|ref|XP_003333538.1| hypothetical protein PGTG_14960 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312528|gb|EFP89119.1| hypothetical protein PGTG_14960 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 179
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 37/72 (51%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S P KLFVGNL + DS L F Q G V + V+ RET RS GFGF+T +
Sbjct: 2 SAAPAGGKLFVGNLAWTTDSGSLKSAFGQFGDVIDAIVMQDRETGRSRGFGFITFKEEAD 61
Query: 81 AEKVVEMFNRYE 92
A +E N E
Sbjct: 62 APGAIEALNGQE 73
>gi|298248948|ref|ZP_06972752.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297546952|gb|EFH80819.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 96
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL Y + ++L F Q G V+ V+ RET RS GFGFV M ++A +E
Sbjct: 2 RLYVGNLSYRITDQELGDFFAQIGRVQRVRVVTERETGRSKGFGFVDMLNEQDARAAIEQ 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|224088210|ref|XP_002308372.1| predicted protein [Populus trichocarpa]
gi|222854348|gb|EEE91895.1| predicted protein [Populus trichocarpa]
Length = 361
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL++G L ++ SE L H F + G +E V + ++T+ S GFGFVT TVE A+K ++
Sbjct: 150 KLYIGGLSPEISSEMLLHFFGRYGEIEEGSVAYNKDTNESRGFGFVTYKTVEAAKKAID 208
>gi|145348372|ref|XP_001418624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578854|gb|ABO96917.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 151
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+ ++ +++ GNL + +D L L + G VE S +I RET RS GFGFVTMS+
Sbjct: 65 RNRDADNRRVYFGNLSWGMDHLDLQDLCGEFGSVEDSRLITDRETGRSRGFGFVTMSSEA 124
Query: 80 EAEKVVEMFN 89
EA++VV N
Sbjct: 125 EADEVVAQLN 134
>gi|443476345|ref|ZP_21066256.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
gi|443018689|gb|ELS32896.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
Length = 173
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL ++D + L +FN++G +VI R+T + GFGFVT+ + E A+ V+E
Sbjct: 4 RLYVGNLPAELDRQALEKIFNESGDSVSLKVITDRKTGKCRGFGFVTVGSDEVADTVIEK 63
Query: 88 FNRYE 92
FN Y+
Sbjct: 64 FNGYD 68
>gi|440796891|gb|ELR17992.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 147
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLFVG L + D L F Q G V ++VI R+T +S GFGFVT ++ +EAE
Sbjct: 3 AKLFVGGLSWGTDDNSLRSAFEQHGEVVDAKVIQDRDTGKSRGFGFVTFASADEAEAAKN 62
Query: 87 MFNRYE 92
N+ E
Sbjct: 63 ALNQTE 68
>gi|241766569|ref|ZP_04764426.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363173|gb|EER58764.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 116
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FNRYETG 94
N G
Sbjct: 64 MNGQPLG 70
>gi|296121725|ref|YP_003629503.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM
3776]
gi|296014065|gb|ADG67304.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM
3776]
Length = 104
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL YDV++ L LF+ G V ++V+ RET RS GFGFV + A +
Sbjct: 4 KLYVGNLTYDVNNSGLEQLFSSFGEVRSAQVVMDRETGRSKGFGFVEFGDSQSASDAINA 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 15 GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74
SE + P KL+VGN+ V +++L + + G VE +EV++ + + RS F FVT
Sbjct: 48 SSEQATVDSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVT 107
Query: 75 MSTVEEAEKVVEMFNRYETG 94
M TVE+A E N E G
Sbjct: 108 MKTVEDANAAAEKLNGTEIG 127
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL +V S+ L F++ G ++V T +S+GFGFVT S+ E+ E +
Sbjct: 160 KVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISS 219
Query: 88 FN 89
FN
Sbjct: 220 FN 221
>gi|22299055|ref|NP_682302.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22295237|dbj|BAC09064.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 193
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQ-AGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L+VGNL D+ E+L LFNQ G V +++I R+T + GFGFVT+ + E A++V+E
Sbjct: 38 RLYVGNLPRDLSREELEALFNQEVGEVGTTKLITDRKTGKCRGFGFVTVESEEVADQVIE 97
Query: 87 MFNRY 91
N Y
Sbjct: 98 KLNGY 102
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 15 GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74
SE + P KL+VGN+ V +++L + + G VE +EV++ + + RS F FVT
Sbjct: 48 SSEQATVDSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVT 107
Query: 75 MSTVEEAEKVVEMFNRYETG 94
M TVE+A E N E G
Sbjct: 108 MKTVEDANAAAEKLNGTEIG 127
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL +V S+ L F++ G ++V T +S+GFGFVT S+ E+ E +
Sbjct: 160 KVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISS 219
Query: 88 FN 89
FN
Sbjct: 220 FN 221
>gi|212528572|ref|XP_002144443.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
gi|210073841|gb|EEA27928.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
Length = 728
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 7 GGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR 66
G E+ G+ +E ++P +LFV +L +EKL F+Q+ V++ + V+ ET +
Sbjct: 28 GKTETNGESTETP-AKPQMRRELFVRSLPASATTEKLTEFFSQSYVLKHATVVIDPETKK 86
Query: 67 STGFGFVTMSTVEEAEKVVEMFN 89
S G+GFVT + +E+A++ +E FN
Sbjct: 87 SKGYGFVTFADIEDAQRALEEFN 109
>gi|301310455|ref|ZP_07216394.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 20_3]
gi|423336704|ref|ZP_17314451.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
gi|300832029|gb|EFK62660.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 20_3]
gi|409240584|gb|EKN33362.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
Length = 123
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L++ NL Y++ E L LF G + ++VI RET RS GFGFV +S E A+K +E
Sbjct: 3 LYISNLSYNISDEDLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEEL 62
Query: 89 NR 90
N+
Sbjct: 63 NQ 64
>gi|326319545|ref|YP_004237217.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376381|gb|ADX48650.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 172
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|255633638|gb|ACU17178.1| unknown [Glycine max]
Length = 196
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLF+G + Y D + L F++ G V + +I RET RS GFGF+T ++VEEA ++
Sbjct: 43 KLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQA 102
Query: 88 FN 89
+
Sbjct: 103 LD 104
>gi|432915990|ref|XP_004079241.1| PREDICTED: cold-inducible RNA-binding protein-like [Oryzias
latipes]
Length = 174
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLF+G L ++ + + LA F + G +E +VI +ET RS GFGFV VE+A+
Sbjct: 2 SDEGKLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAKD 61
Query: 84 VVEMFN 89
++ N
Sbjct: 62 ALDAMN 67
>gi|388567211|ref|ZP_10153648.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
gi|388265594|gb|EIK91147.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
Length = 97
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KL+VGNL Y V+ + L H F++ G V ++V+ R++ RS GFGFV M++ EA+ +
Sbjct: 3 SKLYVGNLPYSVNDDSLRHNFSEFGNVASAKVMTDRDSGRSKGFGFVEMASEAEAQAAIN 62
Query: 87 MFN 89
N
Sbjct: 63 GLN 65
>gi|385808713|ref|YP_005845109.1| RRM domain RNA-binding protein [Ignavibacterium album JCM 16511]
gi|383800761|gb|AFH47841.1| RRM domain RNA-binding protein [Ignavibacterium album JCM 16511]
Length = 83
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG+L + VD E L F + G V ++VI RET RS GFGFV M +A+ +E
Sbjct: 4 KLFVGSLPWSVDDETLRETFEEHGNVVSAKVIKDRETGRSRGFGFVEMENSADAKSAIEA 63
Query: 88 FNRYE 92
N E
Sbjct: 64 LNDSE 68
>gi|365091634|ref|ZP_09328989.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415945|gb|EHL23069.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 192
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAISG 63
Query: 88 FNRYETG 94
N G
Sbjct: 64 MNGQPLG 70
>gi|125543335|gb|EAY89474.1| hypothetical protein OsI_11005 [Oryza sativa Indica Group]
Length = 173
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%)
Query: 12 FGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFG 71
FGDG+EV P KLF+ L EKL + F G + ++VI R + RS GFG
Sbjct: 52 FGDGAEVSNVPPLTAPKLFISGLSRLTTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFG 111
Query: 72 FVTMSTVEEAEKVVEMFN 89
FV +T+EEAE + N
Sbjct: 112 FVRYATLEEAENARQEMN 129
>gi|351731832|ref|ZP_08949523.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 177
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M EA+ +
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAING 63
Query: 88 FNRYETG 94
N G
Sbjct: 64 MNGQPLG 70
>gi|229367642|gb|ACQ58801.1| Cold-inducible RNA-binding protein [Anoplopoma fimbria]
Length = 179
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLF+G L ++ + E LA F + G +E +VI RET++S GFGFV E+A+
Sbjct: 2 SDEGKLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDRETEKSRGFGFVKYDNAEDAKD 61
Query: 84 VVEMFN 89
++ N
Sbjct: 62 AMDGMN 67
>gi|120613408|ref|YP_973086.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591872|gb|ABM35312.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 176
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|257095113|ref|YP_003168754.1| RNP-1 like RNA-binding protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047637|gb|ACV36825.1| RNP-1 like RNA-binding protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 110
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
KL+VGNL Y VD +L LF G V ++VI RET RS GFGFV M + +E
Sbjct: 4 KLYVGNLSYTVDQGELTALFAAHGTVASAQVITDRETGRSKGFGFVEMGSDQE 56
>gi|290992139|ref|XP_002678692.1| RRM domain-containing protein [Naegleria gruberi]
gi|284092305|gb|EFC45948.1| RRM domain-containing protein [Naegleria gruberi]
Length = 98
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
++ P D K+FV NL Y + L F+ AG V + + +T RS G GFV T E
Sbjct: 4 TQAPSDTKVFVSNLPYRTNWSALKEHFSAAGNVTYARIFTDAQTKRSKGIGFVEFDTAEA 63
Query: 81 AEKVVEMFNRYE 92
A K + MFN E
Sbjct: 64 AAKAITMFNESE 75
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 8 GEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRS 67
+E+ + ++ +E P ++ +FVGNL ++VD E LA F G VE + +I +ET R+
Sbjct: 164 ADEAAEEPTKKPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRA 223
Query: 68 TGFGFVT 74
GFG+VT
Sbjct: 224 KGFGYVT 230
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 14 DGSEVDYSEPPEDAK---LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTG- 69
DG+ E P+ A LF+GNL ++V +++ F+Q G ++ V F TDR TG
Sbjct: 265 DGNRQGRKEAPQSAPTTTLFLGNLSFNVTEDEIRESFSQYG--QLVSVRF--PTDRDTGA 320
Query: 70 ---FGFVTMSTVEEAEKVVEMFNRYE 92
FG+V VE A+K VE N E
Sbjct: 321 FKGFGYVEYGDVETAQKAVEGLNGVE 346
>gi|296089370|emb|CBI39142.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 38 VDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETG 94
+ S +L +FN+AG V E+++ R TDRS GF FVTM +V+EA++ + MF+ + G
Sbjct: 1 MTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVG 57
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++ GNL + + SE L F + ++VI+ RE+ RS GFGF++ ++ E AE +
Sbjct: 94 KIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 153
Query: 88 FNRYET 93
N E
Sbjct: 154 MNEVEV 159
>gi|156348369|ref|XP_001621824.1| hypothetical protein NEMVEDRAFT_v1g143489 [Nematostella
vectensis]
gi|156208104|gb|EDO29724.1| predicted protein [Nematostella vectensis]
Length = 89
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ + ++GNL Y VD + L F+ VV++ +VI RET R GFGFVT + EE EK
Sbjct: 3 EEYRCYIGNLSYSVDEQALEEKFHGCDVVDV-KVITDRETGRPRGFGFVTFGSKEEMEKA 61
Query: 85 VEMFN 89
++ F+
Sbjct: 62 IDEFD 66
>gi|121607153|ref|YP_994960.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae
EF01-2]
gi|121551793|gb|ABM55942.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae
EF01-2]
Length = 175
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FNRYETG 94
N G
Sbjct: 64 MNGQPLG 70
>gi|115452257|ref|NP_001049729.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|108707493|gb|ABF95288.1| RNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113548200|dbj|BAF11643.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|125543333|gb|EAY89472.1| hypothetical protein OsI_11004 [Oryza sativa Indica Group]
gi|125585797|gb|EAZ26461.1| hypothetical protein OsJ_10350 [Oryza sativa Japonica Group]
Length = 173
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%)
Query: 12 FGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFG 71
FGDG+EV P KLF+ L EKL + F G + ++VI R + RS GFG
Sbjct: 52 FGDGAEVSNVPPLTAPKLFISGLSRLTTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFG 111
Query: 72 FVTMSTVEEAEKVVEMFN 89
FV +T+EEAE + N
Sbjct: 112 FVRYATLEEAENARQEMN 129
>gi|15239958|ref|NP_196239.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|9759319|dbj|BAB09686.1| unnamed protein product [Arabidopsis thaliana]
gi|17065276|gb|AAL32792.1| Unknown protein [Arabidopsis thaliana]
gi|20260002|gb|AAM13348.1| unknown protein [Arabidopsis thaliana]
gi|21593170|gb|AAM65119.1| unknown [Arabidopsis thaliana]
gi|332003601|gb|AED90984.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 146
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L + + L+ F++ G V ++++ R +DRS GFGFVT ++ +EA+K +
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 87 MFN 89
FN
Sbjct: 94 EFN 96
>gi|116199747|ref|XP_001225685.1| hypothetical protein CHGG_08029 [Chaetomium globosum CBS 148.51]
gi|88179308|gb|EAQ86776.1| hypothetical protein CHGG_08029 [Chaetomium globosum CBS 148.51]
Length = 105
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K++VGNL + D L F G+V S V+ R+T+RS GFGFVT ST EEAE +
Sbjct: 4 SKVYVGNLSWSTDDMSLRTAFEAYGLVVDSIVMKDRDTNRSRGFGFVTFSTTEEAEAAIA 63
Query: 87 MFNRYE 92
++ E
Sbjct: 64 GLDQQE 69
>gi|239818248|ref|YP_002947158.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239804825|gb|ACS21892.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 181
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|87308451|ref|ZP_01090592.1| RNA-binding protein [Blastopirellula marina DSM 3645]
gi|87289008|gb|EAQ80901.1| RNA-binding protein [Blastopirellula marina DSM 3645]
Length = 149
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y S +L +LF Q G V + VI RET RS GFGFV M++ +A E
Sbjct: 4 KLYVGNLPYGYGSSELENLFGQYGQVASASVINDRETGRSRGFGFVEMASDGDALAATEA 63
Query: 88 FNRYET 93
N ++
Sbjct: 64 LNGFDV 69
>gi|297742089|emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLFV NL + + + +LF + G V E+I ++ RS G+ FVTM + EEA
Sbjct: 54 EPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKD-GRSRGYAFVTMDSGEEA 112
Query: 82 EKVVEMFNRYE 92
+ VVE F+ YE
Sbjct: 113 QAVVEKFDSYE 123
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+V NL + V S L F+ V+F + RS G+GF + +T EEAE +
Sbjct: 159 KLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISA 218
Query: 88 FN 89
+
Sbjct: 219 LD 220
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLFV NL + + + +LF + G V E+I ++ RS G+ FVTM + EEA
Sbjct: 84 EPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKD-GRSRGYAFVTMDSGEEA 142
Query: 82 EKVVEMFNRYE 92
+ VVE F+ YE
Sbjct: 143 QAVVEKFDSYE 153
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+V NL + V S L F+ V+F + RS G+GF + +T EEAE +
Sbjct: 189 KLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISA 248
Query: 88 FN 89
+
Sbjct: 249 LD 250
>gi|319765041|ref|YP_004128978.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330827233|ref|YP_004390536.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
gi|317119602|gb|ADV02091.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329312605|gb|AEB87020.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
Length = 116
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y + L F+Q G V+ ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDQDLEQTFSQYGSVQSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|298248970|ref|ZP_06972774.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297546974|gb|EFH80841.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 104
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VG L Y + L LF Q G V + VI RET RS GFGFV MS+ +E +E
Sbjct: 2 RIYVGGLPYQSTEQDLIQLFEQIGQVTSATVITDRETGRSKGFGFVEMSSDDETRAAIEQ 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|226532108|ref|NP_001142375.1| uncharacterized protein LOC100274547 [Zea mays]
gi|194708524|gb|ACF88346.1| unknown [Zea mays]
Length = 163
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K++VGNL + VD+ L +LF++ G V ++VI+ R++ RS GFGFVT + EE +
Sbjct: 80 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAI 137
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91
EV++ R T RS GFGFVTMS+ EEA VE FN Y
Sbjct: 3 EVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGY 37
>gi|298246745|ref|ZP_06970550.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297549404|gb|EFH83270.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 109
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VG L Y + L LF Q G V + VI RET RS GFGFV MS+ +EA +E
Sbjct: 2 RIYVGGLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARVAIEQ 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|116787064|gb|ABK24360.1| unknown [Picea sitchensis]
Length = 365
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 11 SFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
S G G D ++ KL++G L YD ++KL +F++ G +E V + + T++S GF
Sbjct: 147 STGPGQSADQAQ----RKLYIGGLSYDTANDKLLEVFSKYGEIEEGSVAYDKNTNKSRGF 202
Query: 71 GFVTMSTVEEAEKVVEMFNR 90
FVT TVE ++ ++ N+
Sbjct: 203 AFVTFKTVEATKRALKEPNK 222
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ P KLFV L ++ S+ L F Q G +E VI + + +S GFGFVT ++
Sbjct: 63 SKDPAHRKLFVRGLAWETSSQTLCDAFEQYGEIEEGAVIMDKASGKSRGFGFVTFKHMDS 122
Query: 81 AEKVVE 86
A+K ++
Sbjct: 123 AQKALK 128
>gi|326319544|ref|YP_004237216.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376380|gb|ADX48649.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 124
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y E L F+Q G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGNVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|147864061|emb|CAN83223.1| hypothetical protein VITISV_031367 [Vitis vinifera]
Length = 294
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL++G L DV SE L F + G +E V + +ET+ S GFGFVT TVE A+K ++
Sbjct: 109 KLYIGGLAPDVTSEVLLSFFGRHGEIEEGSVAYDKETNESRGFGFVTYKTVEAAKKAID 167
>gi|407941455|ref|YP_006857096.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899249|gb|AFU48458.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 188
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FNRYETG 94
N G
Sbjct: 64 MNGQPLG 70
>gi|443895166|dbj|GAC72512.1| hypothetical protein PANT_7d00134 [Pseudozyma antarctica T-34]
Length = 301
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ + LAH F+ G + V+ RET RS GFGFVT +T EA+ +
Sbjct: 3 AKVYVGNLSWNTTDDSLAHAFSAFGQLTDYIVMKDRETGRSRGFGFVTFATQGEADAAIA 62
Query: 87 MFNRYE 92
N E
Sbjct: 63 ALNEQE 68
>gi|345864924|ref|ZP_08817119.1| RNP-1 like RNA-binding protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124004|gb|EGW53889.1| RNP-1 like RNA-binding protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 91
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++VGNL ++ ++L LF G V+ ++VI RET RS GFGFV MS A+ ++
Sbjct: 2 NIYVGNLSWNTTDDELHELFAPYGAVDSAKVIMDRETGRSRGFGFVEMSDNSAAQSAIDS 61
Query: 88 FNRYETG 94
N + G
Sbjct: 62 LNDSQLG 68
>gi|298713788|emb|CBJ27160.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 380
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P K+FVG L Y+ L F Q G V+ +EV+F RET +S GFGFV + E A
Sbjct: 153 PMATKIFVGGLHYETRDASLQAYFEQFGPVQTAEVMFNRETHKSRGFGFVVFESEESANA 212
Query: 84 VVE 86
V++
Sbjct: 213 VLQ 215
>gi|222112646|ref|YP_002554910.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732090|gb|ACM34910.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 121
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y + L F+Q G V+ ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYTFRDQDLEQTFSQFGAVQSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|156367097|ref|XP_001627256.1| predicted protein [Nematostella vectensis]
gi|156214160|gb|EDO35156.1| predicted protein [Nematostella vectensis]
Length = 86
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ + ++GNL Y VD + L F+ VV++ +VI RET R GFGFVT + EE EK
Sbjct: 3 EEYRCYIGNLSYSVDEQALEEKFHGCDVVDV-KVITDRETGRPRGFGFVTFGSKEEMEKA 61
Query: 85 VEMFN 89
++ F+
Sbjct: 62 IDEFD 66
>gi|392561750|gb|EIW54931.1| hypothetical protein TRAVEDRAFT_83958, partial [Trametes versicolor
FP-101664 SS1]
Length = 192
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
LFVGNL + + + L LF QAG V+ ++V + RS GFG V+ S +AE+ V MF
Sbjct: 118 LFVGNLPFHIQWQDLKDLFRQAGAVQRADVALGAD-GRSRGFGTVSFSNETDAERAVRMF 176
Query: 89 NRYE 92
N YE
Sbjct: 177 NGYE 180
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 34 LRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91
L Y V + L LF +AG V ++V + +RS G+G V ++T E+A + V+MFN Y
Sbjct: 1 LPYRVRWQDLKDLFRRAGTVLRADVSLGPD-NRSRGYGTVLLATAEDAGRAVDMFNGY 57
>gi|428318646|ref|YP_007116528.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
gi|428242326|gb|AFZ08112.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
Length = 185
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL ++D ++L +F G ++VI R+T + GFGFVT+ T E+A++V+E
Sbjct: 4 RLYVGNLPKELDRQELQEVFAPEGESVTTKVITDRKTGKCRGFGFVTVLTDEQADQVIEK 63
Query: 88 FN 89
+N
Sbjct: 64 YN 65
>gi|297739851|emb|CBI30033.3| unnamed protein product [Vitis vinifera]
Length = 342
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++G L DV SE L F + G +E V + +ET+ S GFGFVT TVE A+K ++
Sbjct: 157 KLYIGGLAPDVTSEVLLSFFGRHGEIEEGSVAYDKETNESRGFGFVTYKTVEAAKKAIDD 216
Query: 88 FNRYETGCS 96
++ G S
Sbjct: 217 PQKFLGGRS 225
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P KLFV L ++ SE L F G +E VI + T +S G+GF+T +E +
Sbjct: 62 PVHRKLFVRGLAWNTTSETLCAAFRLHGEIEEGAVIVDKTTGKSRGYGFITYKHMESTQS 121
Query: 84 VVEMFNR 90
++ ++
Sbjct: 122 ALQAPSK 128
>gi|255930353|ref|XP_002556736.1| Pc06g01290 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581349|emb|CAP79122.1| Pc06g01290 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 140
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L ++ D L F + GVVE + V+ R+T RS GFGFV ST +EA +
Sbjct: 2 SKLFIGGLSWNTDDNSLRQRFEEFGVVEDATVVKDRDTGRSRGFGFVRFSTDDEATAAMN 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 AMNNQE 67
>gi|51893978|ref|YP_076669.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum
IAM 14863]
gi|51857667|dbj|BAD41825.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum
IAM 14863]
Length = 86
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL + E L LF G VE + +I RET RS GFGFV M+ E A + +
Sbjct: 5 IYVGNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDMADEEAARRAIAEL 64
Query: 89 NRYETG 94
+ YE G
Sbjct: 65 HNYEYG 70
>gi|428207270|ref|YP_007091623.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428009191|gb|AFY87754.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 165
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYD-VDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L++GNL D VD ++L +F AG ++VI R+T + GFGFVT++ E+A++++E
Sbjct: 4 RLYIGNLPKDEVDRQELQAVFADAGSNVTTKVIKDRKTGKCRGFGFVTVNNDEQADEIIE 63
Query: 87 MFNRY 91
+N Y
Sbjct: 64 KYNGY 68
>gi|345879103|ref|ZP_08830782.1| hypothetical protein Rifp1Sym_dl00160 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223892|gb|EGV50316.1| hypothetical protein Rifp1Sym_dl00160 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 93
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++VGNL ++ ++L LF G V+ ++VI RET RS GFGFV MS A+ ++
Sbjct: 4 NIYVGNLSWNTTDDELHELFAPYGAVDSAKVIMDRETGRSRGFGFVEMSDNSAAQSAIDS 63
Query: 88 FNRYETG 94
N + G
Sbjct: 64 LNDSQLG 70
>gi|326507732|dbj|BAJ86609.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 100
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KL+VGNL + VD+ L +LF++ G V ++VI+ R++ RS GFGFVT + +E +
Sbjct: 15 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 72
>gi|153208628|ref|ZP_01946885.1| RNA-binding protein [Coxiella burnetii 'MSU Goat Q177']
gi|120575889|gb|EAX32513.1| RNA-binding protein [Coxiella burnetii 'MSU Goat Q177']
Length = 103
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VG+L YDV +++L F Q G +E +++I RET RS GF F+T T + A++ V
Sbjct: 5 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 64
Query: 88 FN 89
N
Sbjct: 65 AN 66
>gi|165919016|ref|ZP_02219102.1| RNA-binding protein [Coxiella burnetii Q321]
gi|165917271|gb|EDR35875.1| RNA-binding protein [Coxiella burnetii Q321]
Length = 107
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VG+L YDV +++L F Q G +E +++I RET RS GF F+T T + A++ V
Sbjct: 5 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 64
Query: 88 FN 89
N
Sbjct: 65 AN 66
>gi|161830439|ref|YP_001597044.1| RNA-binding protein [Coxiella burnetii RSA 331]
gi|161762306|gb|ABX77948.1| RNA-binding protein [Coxiella burnetii RSA 331]
Length = 107
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VG+L YDV +++L F Q G +E +++I RET RS GF F+T T + A++ V
Sbjct: 5 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 64
Query: 88 FN 89
N
Sbjct: 65 AN 66
>gi|302754726|ref|XP_002960787.1| hypothetical protein SELMODRAFT_163608 [Selaginella moellendorffii]
gi|300171726|gb|EFJ38326.1| hypothetical protein SELMODRAFT_163608 [Selaginella moellendorffii]
Length = 359
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++G L Y+ +E L ++F+Q G +E V + + T++S GF F+T +VE A K ++
Sbjct: 163 KLYIGGLSYETSNETLLNIFSQYGEIEEGAVAYDKNTNKSRGFAFITYKSVEAARKAIDD 222
Query: 88 FNR 90
N+
Sbjct: 223 PNK 225
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ P KLFV L ++ S+ L F G +E VI + T +S GFGF+T ++
Sbjct: 65 SKDPAHRKLFVRGLAWETTSQALRDAFQHYGEIEEGAVITDKATGKSRGFGFITFKHMDS 124
Query: 81 AEKVVE 86
A++ ++
Sbjct: 125 AQRALK 130
>gi|225441409|ref|XP_002278602.1| PREDICTED: DAZ-associated protein 1-like [Vitis vinifera]
Length = 355
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++G L DV SE L F + G +E V + +ET+ S GFGFVT TVE A+K ++
Sbjct: 170 KLYIGGLAPDVTSEVLLSFFGRHGEIEEGSVAYDKETNESRGFGFVTYKTVEAAKKAIDD 229
Query: 88 FNRYETGCS 96
++ G S
Sbjct: 230 PQKFLGGRS 238
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P KLFV L ++ SE L F G +E VI + T +S G+GF+T +E +
Sbjct: 75 PVHRKLFVRGLAWNTTSETLCAAFRLHGEIEEGAVIVDKTTGKSRGYGFITYKHMESTQS 134
Query: 84 VVEMFNR 90
++ ++
Sbjct: 135 ALQAPSK 141
>gi|334119206|ref|ZP_08493293.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
gi|333458677|gb|EGK87294.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
Length = 189
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL ++D ++L +F G ++VI R+T + GFGFVT+ T E+A++V+E
Sbjct: 4 RLYVGNLPKELDRQELQEVFAPEGESVTTKVITDRKTGKCRGFGFVTVLTDEQADQVIEK 63
Query: 88 FN 89
+N
Sbjct: 64 YN 65
>gi|353235522|emb|CCA67534.1| related to glycine-rich RNA-binding protein [Piriformospora
indica DSM 11827]
Length = 236
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ + L F Q G V S V+ RET RS GFGFVT S+ EEA +
Sbjct: 3 AKIYVGNLSWNTTDDTLREAFRQYGNVVDSIVMRDRETGRSRGFGFVTYSSEEEASNAIS 62
Query: 87 MFN 89
N
Sbjct: 63 GLN 65
>gi|195155759|ref|XP_002018768.1| GL25979 [Drosophila persimilis]
gi|194114921|gb|EDW36964.1| GL25979 [Drosophila persimilis]
Length = 289
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +D+ E L +F G ++ ++I ET+RS G+GF+T E+A+K +E
Sbjct: 30 RLYVGSLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQ 89
Query: 88 FNRYE 92
N +E
Sbjct: 90 LNGFE 94
>gi|406996166|gb|EKE14624.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 84
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ KLFVGNL +DV +L LF G V +E++ + + +S GFGFV M TVEEA+ +
Sbjct: 2 NKKLFVGNLDFDVKDIELEELFKTVGKVITAEIVRFFDK-KSKGFGFVEMETVEEAKTAI 60
Query: 86 EMFNRYE 92
E N E
Sbjct: 61 EKLNDSE 67
>gi|337278094|ref|YP_004617565.1| RNA-binding protein [Ramlibacter tataouinensis TTB310]
gi|334729170|gb|AEG91546.1| Candidate RNA-binding protein [Ramlibacter tataouinensis TTB310]
Length = 95
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y ++ F+Q G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFGDSEMQQAFSQFGTVGSAKVVMDRDTGRSKGFGFVEMGSAAEAQSAIQ 62
>gi|224121390|ref|XP_002318570.1| predicted protein [Populus trichocarpa]
gi|222859243|gb|EEE96790.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 16 SEVDYSEPP--------EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRS 67
SE+ S P +KLFVG + + D L F++ G V + +I RET RS
Sbjct: 21 SEISASRPSIYQAMRCMSSSKLFVGGISFQTDDNSLKEAFDKYGNVVEARIIMDRETGRS 80
Query: 68 TGFGFVTMSTVEEAEKVVEMFN 89
GFGFVT ++ EEA ++ +
Sbjct: 81 RGFGFVTYTSSEEASSAIQALD 102
>gi|434386836|ref|YP_007097447.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus
PCC 6605]
gi|428017826|gb|AFY93920.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus
PCC 6605]
Length = 184
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 28 KLFVGNL-RYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L+VGNL + DV+ E+L +F AG + +VI R+T + GFGFVT+ T E+A++++E
Sbjct: 4 RLYVGNLPKSDVEREELQTVFADAGELVSVKVIKDRKTGKCRGFGFVTVETDEQADQIIE 63
Query: 87 MFN 89
+N
Sbjct: 64 KYN 66
>gi|414883566|tpg|DAA59580.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 277
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + V ++ L ++F +AG+++ + VIF RET RS GFGFV+ ST E+A+ +E
Sbjct: 148 KIYAGNLGWGVRADTLRNVFEGRAGLLD-ARVIFERETGRSRGFGFVSFSTAEDAQAALE 206
Query: 87 MFN 89
+
Sbjct: 207 SLD 209
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 58 VIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
+I+ + T+RS GF FVTM+T EEA K ++MF+
Sbjct: 79 IIYDKVTNRSRGFAFVTMATAEEAAKAIQMFD 110
>gi|59802519|gb|AAX07503.1| unknown [Gemmata sp. Wa1-1]
Length = 122
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KL+VGNL + V +L +F G V ++VI R+T RS GFGFV M T +EA+ +
Sbjct: 41 KLYVGNLSWGVTDSQLQDMFTPYGSVVSAQVIMDRDTGRSKGFGFVEMGTDQEAQAAI 98
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E +++ N D+D E+L LF + G +S + E+ +S GFGFV+ E+A+KV
Sbjct: 143 EFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKV 201
Query: 85 VEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
+ E G S GFGF S + A+ ++G+
Sbjct: 202 M-----MEGGRSKGFGFVCFSSPEEATKAVTEMNGR 232
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ + L F++ G + S V+ RET RS GFGFVT T EEA+ +
Sbjct: 3 AKVYVGNLSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAIN 62
Query: 87 MFNRYE 92
N E
Sbjct: 63 NLNEQE 68
>gi|332531199|ref|ZP_08407112.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332039306|gb|EGI75719.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 131
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y + L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLAYSIRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|291287189|ref|YP_003504005.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884349|gb|ADD68049.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
Length = 94
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++VGNL Y ++L LF G V+ + +I R+T RS GFGFV M+ E+A+ +E
Sbjct: 2 NIYVGNLSYTSSEDELFELFENMGQVDSARIITDRDTGRSKGFGFVEMADAEQAKAAIEQ 61
Query: 88 FNRYETG 94
N E G
Sbjct: 62 LNGTEFG 68
>gi|411117469|ref|ZP_11389956.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410713572|gb|EKQ71073.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 151
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL D+ ++L F +AG +++I R+T++ GFGFVT+ T EEA+ +E
Sbjct: 4 RLYVGNLPEDLSRQELEAAFAEAGDSISTKIITDRKTNKCRGFGFVTVKTDEEADAFIEK 63
Query: 88 FN 89
FN
Sbjct: 64 FN 65
>gi|221048043|gb|ACL98129.1| hyperosmotic glycine rich protein [Epinephelus coioides]
Length = 175
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLF+G L ++ + E LA F + G +E +VI +ET RS GFGFV ++A+
Sbjct: 2 SDEGKLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNCDDAKD 61
Query: 84 VVEMFN 89
+E N
Sbjct: 62 ALEGMN 67
>gi|116180414|ref|XP_001220056.1| hypothetical protein CHGG_00835 [Chaetomium globosum CBS 148.51]
gi|88185132|gb|EAQ92600.1| hypothetical protein CHGG_00835 [Chaetomium globosum CBS 148.51]
Length = 475
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D PP D LFVGNL + D +++ FN+ V+ + +E+ R GF +VT S++
Sbjct: 319 DVISPPSDT-LFVGNLPFSADESSVSNYFNEVAQVQSLRIPTDQESGRPKGFAYVTFSSI 377
Query: 79 EEAEKVVEMFN 89
++A+KV E N
Sbjct: 378 DDAKKVFEALN 388
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
A L+VGNL + VD L F + + V+ +ET RS GFG+V + E A+K
Sbjct: 221 ATLWVGNLGWGVDDNALYEEFQSIEGIVSARVVSDKETGRSRGFGYVDFDSAEAAQKA 278
>gi|113478077|ref|YP_724138.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110169125|gb|ABG53665.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 102
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL YDV + L+ +F + G V+ ++ RET R GFGFV MS+ E +K +E
Sbjct: 3 IYVGNLSYDVTQDDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSENEEQKAIEAL 62
Query: 89 NRYETGCSHGFGFFTMSDESKLNDAIAALD----GQARILPHF 127
+ G M + K+N A D G R P++
Sbjct: 63 D----------GAEWMGRDIKVNKAKPREDRGSGGNRRNSPNY 95
>gi|408393961|gb|EKJ73218.1| hypothetical protein FPSE_06642 [Fusarium pseudograminearum
CS3096]
Length = 112
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKL++GNL ++ + L + + G++ S V+ R+T RS GFGFVT +VEEAE V
Sbjct: 3 AKLYIGNLSWNTTDDTLRNACQEFGMIIDSIVMRDRDTGRSRGFGFVTFGSVEEAENAVN 62
Query: 87 MFNRYE 92
N E
Sbjct: 63 GLNEQE 68
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y + +L +F+ G V ++++ +ET+RS GFGFV MS+ E+A+K +E
Sbjct: 4 IYVGNLSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGT 63
Query: 89 NRYETG 94
N E G
Sbjct: 64 NGKEVG 69
>gi|209364023|ref|YP_001424629.2| glycine-rich RNA-binding protein [Coxiella burnetii Dugway
5J108-111]
gi|207081956|gb|ABS78255.2| glycine-rich RNA-binding protein [Coxiella burnetii Dugway
5J108-111]
Length = 112
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VG+L YDV +++L F Q G +E +++I RET RS GF F+T T + A++ V
Sbjct: 10 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 69
Query: 88 FN 89
N
Sbjct: 70 AN 71
>gi|225457213|ref|XP_002284026.1| PREDICTED: uncharacterized protein LOC100256940 [Vitis vinifera]
Length = 277
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L Y D L F++ G V + VI RET RS GFGFVT ++ EEA ++
Sbjct: 40 SKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQ 99
Query: 87 MFN 89
+
Sbjct: 100 ALD 102
>gi|398810631|ref|ZP_10569445.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398082488|gb|EJL73237.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 179
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|319796634|ref|YP_004158274.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315599097|gb|ADU40163.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 189
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG L Y D L F+Q G V + VI RET RS GFGF++ + EEA ++
Sbjct: 40 SKLFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAMQ 99
Query: 87 MF 88
Sbjct: 100 AM 101
>gi|209527224|ref|ZP_03275736.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376003288|ref|ZP_09781101.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|209492382|gb|EDZ92725.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375328318|emb|CCE16854.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
Length = 93
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL YDV + L+ +F Q G V+ S + RET RS GFGFV M +E K +E
Sbjct: 3 IYVGNLSYDVTPDDLSEVFAQYGTVKRSMIPTDRETGRSRGFGFVEMVNEDEETKAIEAL 62
Query: 89 N 89
+
Sbjct: 63 D 63
>gi|331237853|ref|XP_003331583.1| hypothetical protein PGTG_13383 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310573|gb|EFP87164.1| hypothetical protein PGTG_13383 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 351
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEV-IFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K+FVGNL + E+L +F G +IS+V I YR T RS G+GFVT +T EEAEK V
Sbjct: 32 KVFVGNLSFATKDEQLRDVFQTHG--QISDVQIIYRGT-RSLGYGFVTFATCEEAEKAVA 88
Query: 87 MFNRYE 92
++ E
Sbjct: 89 ATDKTE 94
>gi|408398205|gb|EKJ77338.1| hypothetical protein FPSE_02416 [Fusarium pseudograminearum
CS3096]
Length = 128
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KL+VGNL ++ + L F++ G V S ++ RET R+ GFGFVT ST E+A V+
Sbjct: 2 SKLYVGNLSWNTTDDTLRQTFSEFGEVTDSIIMRDRETGRARGFGFVTFSTEEQANAAVD 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 ALNEQE 67
>gi|241766570|ref|ZP_04764427.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363174|gb|EER58765.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 125
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y E L F+Q G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|443694236|gb|ELT95429.1| hypothetical protein CAPTEDRAFT_160825 [Capitella teleta]
Length = 548
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
SE +FVGN+ Y+ E+L +F QAG V +++ RET + G+GF VE
Sbjct: 18 SEERAQRSVFVGNIPYEASEEQLKEVFQQAGPVISFRLVYDRETGKPKGYGFCEYQDVET 77
Query: 81 AEKVVEMFNRYE 92
A+ + N Y+
Sbjct: 78 AQSAMRNLNNYD 89
>gi|146328793|ref|YP_001209360.1| RNA recognition motif-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232263|gb|ABQ13241.1| RNA recognition motif protein [Dichelobacter nodosus VCS1703A]
Length = 95
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y ++L + F+Q G V+ + +I R++ RS GFGFV M E A+K +E
Sbjct: 4 IYVGNLSYRTTEDELRNAFSQFGDVQNASIIKDRDSGRSKGFGFVEMPDAEAAKKAIESL 63
Query: 89 NRYETG 94
N + G
Sbjct: 64 NDKDLG 69
>gi|347819854|ref|ZP_08873288.1| RNP-1 like RNA-binding protein [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 168
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAITG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|407941454|ref|YP_006857095.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899248|gb|AFU48457.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 125
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y E L F+Q G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|290985168|ref|XP_002675298.1| hypothetical protein NAEGRDRAFT_80404 [Naegleria gruberi]
gi|284088893|gb|EFC42554.1| hypothetical protein NAEGRDRAFT_80404 [Naegleria gruberi]
Length = 641
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ E A LF+ +L DVD KL LF++ G +E +VI +T+ S G+GFV ++
Sbjct: 470 SKSGETANLFIFHLPGDVDDSKLMELFSKFGEIESVKVIRDPKTNLSKGYGFVKYCNIDS 529
Query: 81 AEKVVEMFNRYETGCSHGFGFFTMSD--ESKLNDAIAALDGQARIL 124
A + V N Y+ G H F SD KL+ + D Q +I+
Sbjct: 530 AMEAVSKMNSYKIGKKHLKVSFHNSDVPSGKLDSPVT--DSQFKII 573
>gi|168021263|ref|XP_001763161.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685644|gb|EDQ72038.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++G L YD S+ L ++F+Q G +E + + + T++S GF FVT ++E A++ +E
Sbjct: 145 KLYIGGLSYDTTSDTLLNIFSQYGEIEEGAIAYDKNTNKSRGFAFVTFKSIEGAKRAIED 204
Query: 88 FNR 90
N+
Sbjct: 205 SNK 207
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ P KLFV L ++ S L F Q G VE + VI + T +S GFGF+T ++
Sbjct: 47 SKDPVHRKLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDS 106
Query: 81 AEKVVE 86
A + ++
Sbjct: 107 AHRALK 112
>gi|374812572|ref|ZP_09716309.1| RNA-binding protein [Treponema primitia ZAS-1]
Length = 90
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y+ + L LF+ G VE ++I R+T S GFGFV MST EA+ +
Sbjct: 4 KLYVGNLSYNTHEDNLRSLFSAFGTVESVKIITDRDTGNSKGFGFVEMSTDAEAQAAISG 63
Query: 88 FN 89
N
Sbjct: 64 TN 65
>gi|395005502|ref|ZP_10389379.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394316555|gb|EJE53276.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 130
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y E L F+Q G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|365091633|ref|ZP_09328988.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415944|gb|EHL23068.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 129
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y E L F+Q G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|351731831|ref|ZP_08949522.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 131
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y E L F+Q G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|300868683|ref|ZP_07113294.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
gi|300333244|emb|CBN58486.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
Length = 182
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 44/62 (70%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL +++ ++L +F + G ++VI R+T + GFGFVT++T E+A++V+E
Sbjct: 4 RLYVGNLPKELERQELQAVFAEEGESVSAKVITDRKTGKCRGFGFVTVATDEQADQVIEK 63
Query: 88 FN 89
+N
Sbjct: 64 YN 65
>gi|449441097|ref|XP_004138320.1| PREDICTED: uncharacterized protein LOC101218446 [Cucumis sativus]
Length = 232
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 18 VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
V + E +K+FVG + + D + L F + G V + VI RET RS GFGFVT ++
Sbjct: 34 VRWMSSMESSKVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTS 93
Query: 78 VEEAEKVVEMFN 89
EEA ++ +
Sbjct: 94 SEEASSAIQALD 105
>gi|46139099|ref|XP_391240.1| hypothetical protein FG11064.1 [Gibberella zeae PH-1]
Length = 127
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KL+VGNL ++ E L F++ G V S ++ R+T R+ GFGFVT ST E+A V+
Sbjct: 2 SKLYVGNLSWNTTDETLRQTFSEFGEVTDSIIMRDRDTGRARGFGFVTFSTEEQATAAVD 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 ALNEQE 67
>gi|365875472|ref|ZP_09415000.1| RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442588736|ref|ZP_21007546.1| RNA-binding protein [Elizabethkingia anophelis R26]
gi|365756731|gb|EHM98642.1| RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442561494|gb|ELR78719.1| RNA-binding protein [Elizabethkingia anophelis R26]
Length = 93
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ N+ Y V +L LF G ++ +++I RET RS GFGFV M +EA +E
Sbjct: 3 IFISNINYSVKESQLEELFASYGAIQSAKIIMDRETGRSRGFGFVEMPNNDEANTAIESL 62
Query: 89 N 89
N
Sbjct: 63 N 63
>gi|449477140|ref|XP_004154942.1| PREDICTED: uncharacterized LOC101218446 [Cucumis sativus]
Length = 287
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 18 VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
V + E +K+FVG + + D + L F + G V + VI RET RS GFGFVT ++
Sbjct: 34 VRWMSSMESSKVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTS 93
Query: 78 VEEAEKVVEMFN 89
EEA ++ +
Sbjct: 94 SEEASSAIQALD 105
>gi|392593257|gb|EIW82582.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 136
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KL+VGNL + + L + F + G V S V+ RET RS GFGFVT +T EEA +
Sbjct: 3 SKLYVGNLSWSTGDDGLRNAFGRYGAVTDSIVMRDRETGRSRGFGFVTFTTAEEANAAMG 62
Query: 87 MFNRYE 92
++ E
Sbjct: 63 QMDQTE 68
>gi|406985531|gb|EKE06283.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 83
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KLF+GNL ++V S+ L F G V + VI R T RS GFGFV M T E+A K +E
Sbjct: 3 KLFIGNLSWEVTSDDLRAFFASFGTVIDAVVIMDRMTGRSRGFGFVEMETEEQANKALE 61
>gi|297741610|emb|CBI32742.3| unnamed protein product [Vitis vinifera]
Length = 127
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 44/104 (42%), Gaps = 41/104 (39%)
Query: 57 EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY------------------------- 91
EVI+ + T RS GFGFVTMSTVEE E + FN Y
Sbjct: 3 EVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENTLETL 62
Query: 92 ----------------ETGCSHGFGFFTMSDESKLNDAIAALDG 119
ETG S GFGF T + ++N AI +LDG
Sbjct: 63 FSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDG 106
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 43 LAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
L LF++ G V + VI+ RET RS GFGFVT ++ EE + +E +
Sbjct: 59 LETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLD 105
>gi|343459003|gb|AEM37660.1| cold inducible RNA binding protein [Epinephelus bruneus]
Length = 176
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLF+G L ++ + E LA F + G +E +VI +ET RS GFGFV ++A+
Sbjct: 2 SDEGKLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNSDDAKD 61
Query: 84 VVEMFN 89
+E N
Sbjct: 62 ALEGMN 67
>gi|268680880|ref|YP_003305311.1| RNP-1 like RNA-binding protein [Sulfurospirillum deleyianum DSM
6946]
gi|268618911|gb|ACZ13276.1| RNP-1 like RNA-binding protein [Sulfurospirillum deleyianum DSM
6946]
Length = 101
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGN++Y++ ++L +F+ G V + +I RET RS GFGFV M EA+ +E
Sbjct: 3 IYVGNVKYEMTGDQLKEMFSAYGEVSSARIINDRETGRSKGFGFVEMPNDSEAKAAIEAT 62
Query: 89 NRYETG 94
N E G
Sbjct: 63 NEKEIG 68
>gi|15239505|ref|NP_200911.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
gi|9759450|dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana]
gi|16974556|gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|21928059|gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|225879144|dbj|BAH30642.1| hypothetical protein [Arabidopsis thaliana]
gi|332010031|gb|AED97414.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
Length = 309
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G + Y +D + L F + G V + VI RET RS GFGFVT ++ E A ++
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 87 MFN 89
+
Sbjct: 100 ALD 102
>gi|212212428|ref|YP_002303364.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuG_Q212]
gi|212010838|gb|ACJ18219.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuG_Q212]
Length = 121
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VG+L YDV +++L F Q G +E +++I RET RS GF F+T T + A++ V
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 88 FN 89
N
Sbjct: 79 AN 80
>gi|212218608|ref|YP_002305395.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuK_Q154]
gi|215919123|ref|NP_820178.2| nucleic acid binding domain-containing protein [Coxiella burnetii
RSA 493]
gi|206584008|gb|AAO90692.2| glycine-rich RNA-binding protein [Coxiella burnetii RSA 493]
gi|212012870|gb|ACJ20250.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuK_Q154]
Length = 117
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VG+L YDV +++L F Q G +E +++I RET RS GF F+T T + A++ V
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 88 FN 89
N
Sbjct: 79 AN 80
>gi|149924767|ref|ZP_01913111.1| probable nucleic acid-binding protein [Plesiocystis pacifica SIR-1]
gi|149814351|gb|EDM73949.1| probable nucleic acid-binding protein [Plesiocystis pacifica SIR-1]
Length = 155
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S PP +LFVG L +D +S+ L LF + G V + ++ R+T S GFGFVTM+ ++
Sbjct: 72 SGPP--CRLFVGGLSWDTESDSLRELFAKVGAVVDAMIVTDRDTGDSRGFGFVTMANRKD 129
Query: 81 AEKVVE 86
A K ++
Sbjct: 130 ATKAMK 135
>gi|430747489|ref|YP_007206618.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430019209|gb|AGA30923.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 118
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L+VGNL + V SE+L LF G V +S+V+ RET RS GFGFV M E + ++
Sbjct: 4 RLYVGNLGFSVTSEELQALFESFGAVSMSQVVEDRETGRSRGFGFVEMVNDAEGDAAIQ 62
>gi|170585852|ref|XP_001897696.1| RNA recognition motif containing protein [Brugia malayi]
gi|312066609|ref|XP_003136351.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|158595003|gb|EDP33580.1| RNA recognition motif containing protein, putative [Brugia
malayi]
gi|307768478|gb|EFO27712.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|402585724|gb|EJW79663.1| RNA-binding protein [Wuchereria bancrofti]
Length = 300
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
+G D + ED K+FVG + YDV +E L+ F+Q G V ++V + R T RS GF FV
Sbjct: 25 EGGLKDLGKGNEDKKIFVGGIAYDVTNEDLSQYFSQYGEVAQAQVKYDRNTGRSRGFAFV 84
Query: 74 TMSTVE 79
+T E
Sbjct: 85 EFTTGE 90
>gi|348501352|ref|XP_003438234.1| PREDICTED: cold-inducible RNA-binding protein A-like [Oreochromis
niloticus]
Length = 183
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLF+G L ++ + + LA F + G +E +VI +ET RS GFGFV E+A+
Sbjct: 2 SDEGKLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNAEDAKD 61
Query: 84 VVEMFN 89
++ N
Sbjct: 62 ALDAMN 67
>gi|242766029|ref|XP_002341092.1| ribosome biogenesis (Nop4), putative [Talaromyces stipitatus ATCC
10500]
gi|218724288|gb|EED23705.1| ribosome biogenesis (Nop4), putative [Talaromyces stipitatus ATCC
10500]
Length = 715
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 10 ESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTG 69
E+ G+ E ++P +LFV +L +EKL F+Q+ V++ + V+ ET +S G
Sbjct: 31 ETNGESKETP-AKPQMRRELFVRSLPASATTEKLTGFFSQSYVIKHATVVIDPETKQSKG 89
Query: 70 FGFVTMSTVEEAEKVVEMFNRYE 92
+GFVT + +E+A++ +E FN E
Sbjct: 90 YGFVTFADIEDAQRALEEFNGVE 112
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 19 DYSEPPEDAKLFVGNLRYDV-DSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
+ ++PP KL V NL + + DS++LA LF G ++ + ++ + GFGFV +
Sbjct: 155 EQTQPP---KLIVRNLPWTIKDSDQLAALFRSFG--KVKHAVVPKKGNVQAGFGFVVLRG 209
Query: 78 VEEAEKVVEMFNRYE 92
+ AEK +E N E
Sbjct: 210 RKNAEKALEAVNGKE 224
>gi|150007582|ref|YP_001302325.1| RNA-binding protein rbpA [Parabacteroides distasonis ATCC 8503]
gi|255013892|ref|ZP_05286018.1| putative RNA-binding protein rbpA [Bacteroides sp. 2_1_7]
gi|298375526|ref|ZP_06985483.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 3_1_19]
gi|410101874|ref|ZP_11296802.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
gi|423331931|ref|ZP_17309715.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|149936006|gb|ABR42703.1| putative RNA-binding protein rbpA [Parabacteroides distasonis
ATCC 8503]
gi|298268026|gb|EFI09682.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 3_1_19]
gi|409229772|gb|EKN22644.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|409239672|gb|EKN32456.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
Length = 123
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L++ NL Y++ E L LF G + ++VI RET RS GFGFV +S E A+K +E
Sbjct: 3 LYISNLSYNISDEDLRLLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEEL 62
Query: 89 NR 90
N+
Sbjct: 63 NQ 64
>gi|37522494|ref|NP_925871.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
gi|35213495|dbj|BAC90866.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
Length = 195
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL +V ++L +F AG V +VI R+T + GFGF+T+ST E A+ +E
Sbjct: 4 RLYVGNLPEEVTRQELEAIFAPAGEVVSLKVITDRKTGKCRGFGFLTVSTPEAADSFIEQ 63
Query: 88 FN 89
FN
Sbjct: 64 FN 65
>gi|297793663|ref|XP_002864716.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
gi|297310551|gb|EFH40975.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
Length = 327
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G + Y +D + L F + G V + VI RET RS GFGFVT ++ E A ++
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVETRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 87 MFN 89
+
Sbjct: 100 ALD 102
>gi|255579005|ref|XP_002530354.1| conserved hypothetical protein [Ricinus communis]
gi|223530101|gb|EEF32015.1| conserved hypothetical protein [Ricinus communis]
Length = 534
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL++G L ++ SE L + F + G +E V + ++T+ S GFGFVT TVE A+K ++
Sbjct: 358 KLYIGGLSPEITSEMLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAID 416
>gi|121596408|ref|YP_988304.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608488|gb|ABM44228.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 121
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KL+VGNL Y + L F+Q G V+ ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYTFRDQDLEQTFSQFGAVQSAKVMMERDTGRSKGFGFVEMGSDAEAQAAI 61
>gi|299529241|ref|ZP_07042685.1| RNP-1 like RNA-binding protein [Comamonas testosteroni S44]
gi|418530962|ref|ZP_13096882.1| RNP-1 like RNA-binding protein [Comamonas testosteroni ATCC
11996]
gi|298722765|gb|EFI63678.1| RNP-1 like RNA-binding protein [Comamonas testosteroni S44]
gi|371452041|gb|EHN65073.1| RNP-1 like RNA-binding protein [Comamonas testosteroni ATCC
11996]
Length = 83
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+ L+V NL Y +D E L F+ G V SEVI R T +S GFGFV M T +A+ ++
Sbjct: 3 SNLYVSNLGYGIDRETLKSHFSSCGDVISSEVIMDRNTGQSRGFGFVEMGTAAQAKTAID 62
Query: 87 MFNRYETG 94
N G
Sbjct: 63 SLNDQSLG 70
>gi|71023135|ref|XP_761797.1| hypothetical protein UM05650.1 [Ustilago maydis 521]
gi|46100820|gb|EAK86053.1| hypothetical protein UM05650.1 [Ustilago maydis 521]
Length = 508
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+D K+F GNL + ++L LF++AG V ++VI RS G+GFVT ST A+
Sbjct: 223 DDKKVFAGNLAFATTEDELKTLFSEAGTVTHAQVI--TRGTRSLGYGFVTFSTEAGAQNA 280
Query: 85 VEMFNRYETG 94
+++ N+ E G
Sbjct: 281 IKLLNKREVG 290
>gi|120613407|ref|YP_973085.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591871|gb|ABM35311.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 123
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y + L F+Q G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDDDLQQTFSQYGSVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|53804863|ref|YP_113486.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
gi|53758624|gb|AAU92915.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
Length = 95
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KL+VGNL Y V L F G V+ ++V+ R T RS GFGFV M + +EA+ +
Sbjct: 3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62
Query: 87 MFN 89
N
Sbjct: 63 GLN 65
>gi|255014055|ref|ZP_05286181.1| RNA binding protein [Bacteroides sp. 2_1_7]
gi|262382108|ref|ZP_06075246.1| RNA binding protein [Bacteroides sp. 2_1_33B]
gi|301310681|ref|ZP_07216620.1| RNA-binding protein [Bacteroides sp. 20_3]
gi|410101712|ref|ZP_11296640.1| hypothetical protein HMPREF0999_00412 [Parabacteroides sp. D25]
gi|423336932|ref|ZP_17314679.1| hypothetical protein HMPREF1059_00631 [Parabacteroides distasonis
CL09T03C24]
gi|262297285|gb|EEY85215.1| RNA binding protein [Bacteroides sp. 2_1_33B]
gi|300832255|gb|EFK62886.1| RNA-binding protein [Bacteroides sp. 20_3]
gi|409239510|gb|EKN32294.1| hypothetical protein HMPREF0999_00412 [Parabacteroides sp. D25]
gi|409239951|gb|EKN32734.1| hypothetical protein HMPREF1059_00631 [Parabacteroides distasonis
CL09T03C24]
Length = 81
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+++GNL Y V L + + GVV+ ++I R+T RS GF F M V+EA+K +E
Sbjct: 3 IYIGNLSYRVRESDLQQVLEEYGVVDSVKLIVDRDTRRSKGFAFAEMPNVDEAQKAIEEL 62
Query: 89 NRYE 92
N+ E
Sbjct: 63 NQAE 66
>gi|307718869|ref|YP_003874401.1| hypothetical protein STHERM_c11870 [Spirochaeta thermophila DSM
6192]
gi|306532594|gb|ADN02128.1| hypothetical protein STHERM_c11870 [Spirochaeta thermophila DSM
6192]
Length = 100
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL Y + L LF Q G VE ++I R++ S GFGFV MS+ E E +
Sbjct: 4 KIYVGNLNYQTTEDTLRQLFEQYGEVESVKIITDRDSGFSKGFGFVEMSSEEAGEAAISA 63
Query: 88 FNRYE 92
N++E
Sbjct: 64 LNQHE 68
>gi|357462751|ref|XP_003601657.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355490705|gb|AES71908.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 146
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 16 SEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTM 75
S ++Y +KLF+G L Y+VD + L F G V + VI RET RS GFGFV
Sbjct: 25 SMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNF 84
Query: 76 STVEEAEKVVEM 87
++ E A + M
Sbjct: 85 TSEESATSALSM 96
>gi|215820612|ref|NP_001135965.1| RNA binding motif protein 39 [Acyrthosiphon pisum]
Length = 501
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VG+L Y++ E L +F G V+ +++ ET RS G+GF+T E+A+K +E
Sbjct: 239 KLYVGSLHYNITEEMLRGIFEPFGHVDNIQLMMDTETGRSKGYGFLTYRNAEDAKKALEH 298
Query: 88 FNRYE 92
N +E
Sbjct: 299 LNGFE 303
>gi|20975276|dbj|BAB92955.1| cold inducible RNA-binding protein alpha [Hyla japonica]
Length = 162
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F + G +ISEV+ RET RS GFGFVT E+
Sbjct: 3 SSDEGKLFVGGLSFDTEEQSLEQVFGKYG--QISEVVVVKDRETKRSRGFGFVTFENPED 60
Query: 81 AEKVVEMFN 89
A+ +E N
Sbjct: 61 AKDAMEAMN 69
>gi|375103924|ref|ZP_09750185.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374664655|gb|EHR69440.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 129
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F + G V ++V+ R++ RS GFGFV M + EEA+ +
Sbjct: 4 KLYVGNLAYSVTDASLQQQFAECGTVTSAKVMMDRDSGRSKGFGFVEMGSHEEAQAAIRK 63
Query: 88 FN 89
+
Sbjct: 64 LH 65
>gi|406676693|ref|ZP_11083878.1| hypothetical protein HMPREF1170_02086 [Aeromonas veronii AMC35]
gi|423201900|ref|ZP_17188479.1| hypothetical protein HMPREF1167_02062 [Aeromonas veronii AER39]
gi|423207067|ref|ZP_17193623.1| hypothetical protein HMPREF1168_03258 [Aeromonas veronii AMC34]
gi|423209269|ref|ZP_17195823.1| hypothetical protein HMPREF1169_01341 [Aeromonas veronii AER397]
gi|404615847|gb|EKB12806.1| hypothetical protein HMPREF1167_02062 [Aeromonas veronii AER39]
gi|404617127|gb|EKB14063.1| hypothetical protein HMPREF1169_01341 [Aeromonas veronii AER397]
gi|404621360|gb|EKB18249.1| hypothetical protein HMPREF1168_03258 [Aeromonas veronii AMC34]
gi|404625007|gb|EKB21824.1| hypothetical protein HMPREF1170_02086 [Aeromonas veronii AMC35]
Length = 93
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL Y + +++L LF+Q G V+ ++I R+T +S GFGF+ M +AEK +
Sbjct: 2 KIYVGNLSYRMTADELKTLFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAG 61
Query: 88 FNRYETG 94
+ E G
Sbjct: 62 LHGTEVG 68
>gi|160872542|ref|ZP_02062674.1| RNA-binding protein [Rickettsiella grylli]
gi|159121341|gb|EDP46679.1| RNA-binding protein [Rickettsiella grylli]
Length = 133
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ +L+VG L Y VD + L LF G V +VI + RS GFGFV MST EEA++ +
Sbjct: 2 NKRLYVGGLSYSVDDDGLRELFTPFGTVSFVKVIRDFHSGRSKGFGFVEMSTPEEAKEAI 61
Query: 86 EMFN 89
E +
Sbjct: 62 EALH 65
>gi|320103893|ref|YP_004179484.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
gi|319751175|gb|ADV62935.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
Length = 104
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL YD ++L +F++ G V ++++ RET+RS GFGF+ M T A++ +E
Sbjct: 2 KLYVGNLPYDTTEDQLIDVFSEYGEVVSAQIMIDRETNRSRGFGFIEMRT--GAQEAIEA 59
Query: 88 FN 89
N
Sbjct: 60 LN 61
>gi|254572962|ref|XP_002493590.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|238033389|emb|CAY71411.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|328354581|emb|CCA40978.1| Nuclear localization sequence-binding protein [Komagataella
pastoris CBS 7435]
Length = 362
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D PP D LF+GNL + D + L LF++ G V + + ET++ GFG+V S+V
Sbjct: 222 DKRSPPSDT-LFLGNLSFQADRDTLFELFSKHGNVTSVRIPTHPETEQPKGFGYVQFSSV 280
Query: 79 EEAEKVVEMFN 89
+EA +E N
Sbjct: 281 DEATGALEALN 291
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
LFVG L + +D E L F G V + V+ R T RS G+G+V AEK +E
Sbjct: 128 LFVGRLSWSIDDEWLKKEFEHIGGVVGARVMMERATGRSRGYGYVDFDNKASAEKALE 185
>gi|156346232|ref|XP_001621481.1| hypothetical protein NEMVEDRAFT_v1g76367 [Nematostella vectensis]
gi|156207460|gb|EDO29381.1| predicted protein [Nematostella vectensis]
Length = 88
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K ++GNL Y VD + L F+ VV+++ +I RET R GFGFVT + EE EK ++
Sbjct: 8 KCYIGNLSYSVDEQALEDKFHGYNVVDVN-IITDRETGRPRGFGFVTFGSKEEMEKAIDE 66
Query: 88 FN 89
F+
Sbjct: 67 FD 68
>gi|75319742|sp|Q43472.1|GRP_HORVU RecName: Full=Glycine-rich RNA-binding protein blt801; AltName:
Full=Low temperature-responsive RNA-binding protein
gi|1229138|gb|AAB07749.1| low temperature-responsive RNA-binding protein [Hordeum vulgare
subsp. vulgare]
Length = 161
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG LR+ D + L + F++ G V S++I RET RS GFGFVT ++ E + +E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 88 FN 89
N
Sbjct: 67 MN 68
>gi|117619969|ref|YP_856326.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561376|gb|ABK38324.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 95
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL Y + +++L +F+Q G V+ ++I R+T +S GFGF+ M EAEK +
Sbjct: 5 KIYVGNLSYRMTADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAG 64
Query: 88 FNRYETG 94
+ E G
Sbjct: 65 LHGTEIG 71
>gi|430812117|emb|CCJ30453.1| unnamed protein product [Pneumocystis jirovecii]
Length = 258
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+PP +FVGN+ YDV E+L +F Q G + ++F +ET++ G+GF V
Sbjct: 3 SKPPSKV-VFVGNIPYDVSEEQLKDIFRQIGPINRFRLVFDKETNKPKGYGFCEYPDVAT 61
Query: 81 AEKVVEMFNRYETGCSHGFGFFTMSDESKLND 112
A V N ++ F SD ++ N+
Sbjct: 62 ASAAVRNLNNHDINGRQLRVDFAESDPAQDNN 93
>gi|262340986|ref|YP_003283841.1| RNA-binding protein [Blattabacterium sp. (Blattella germanica)
str. Bge]
gi|262272323|gb|ACY40231.1| putative RNA-binding protein [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 90
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET--DRSTGFGFVTMSTVEEAE 82
++ KL+VGNL YD+ ++L F G V +++IF T RS GFGF+ MS E A+
Sbjct: 2 DNTKLYVGNLSYDMTEQELKKYFESIGEVTHAKIIFDESTSNKRSKGFGFIEMSNEENAK 61
Query: 83 KVVEMFN 89
+ +E N
Sbjct: 62 QAIEKLN 68
>gi|406944721|gb|EKD76419.1| hypothetical protein ACD_43C00118G0001 [uncultured bacterium]
Length = 84
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ LFVG + + + L F QAG V +++I + T RS GFGFV MST EEA+ +
Sbjct: 2 NTNLFVGGIAFKSTDDTLREAFMQAGNVVSAKIIMDKMTGRSRGFGFVEMSTPEEAQAAI 61
Query: 86 EMFNRYE 92
+M++ E
Sbjct: 62 QMWDGKE 68
>gi|449544433|gb|EMD35406.1| hypothetical protein CERSUDRAFT_124727 [Ceriporiopsis subvermispora
B]
Length = 982
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 12/97 (12%)
Query: 4 GFIGGEESF------GDGSEVDYSEPPEDA--KLFVGNLRYDVDSEKLAHLFNQAGVVEI 55
G +GGEE+ G GS P A LFVGNL + + + L LF QAG V+
Sbjct: 237 GLLGGEEAGAALSRPGTGSG---GVPALGASRNLFVGNLPFHIQWQDLKDLFRQAGAVQR 293
Query: 56 SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
++V + RS GFG V+ + +AE+ V MFN +E
Sbjct: 294 ADVALGAD-GRSRGFGTVSFANEADAERAVRMFNGFE 329
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 23 PPEDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
P D + LFVGNL Y V + L LF +AG V ++V + +RS GFG V +++ E+
Sbjct: 104 PQRDTRTQLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPD-NRSRGFGTVLLASAED 162
Query: 81 AEKVVEMFNRY 91
A + V+MFN Y
Sbjct: 163 AGRAVDMFNGY 173
>gi|125536111|gb|EAY82599.1| hypothetical protein OsI_37820 [Oryza sativa Indica Group]
Length = 197
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISE 57
PPE+AK +V NL YD+DSE+LA LF A VVE+S+
Sbjct: 158 PPEEAKAYVRNLPYDIDSERLAQLFEHANVVEVSK 192
>gi|221065729|ref|ZP_03541834.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220710752|gb|EED66120.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 83
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+ L+V NL Y VD E L F+ G V SEVI R T +S GFGFV M T +A+ ++
Sbjct: 3 SNLYVSNLGYGVDRETLKSHFSSCGDVLSSEVITDRNTGQSRGFGFVEMGTAAQAKTAID 62
Query: 87 MFNRYETG 94
N G
Sbjct: 63 SLNDQSLG 70
>gi|324501271|gb|ADY40568.1| RNA-binding protein squid [Ascaris suum]
Length = 303
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
ED K+FVG + YDV +E L + F+Q G V ++V F R T RS GF FV +T E
Sbjct: 36 EDKKIFVGGIAYDVTNEDLCNYFSQFGEVAQAQVKFDRNTGRSRGFAFVEFATGE 90
>gi|167383625|ref|XP_001736605.1| cold-inducible RNA-binding protein [Entamoeba dispar SAW760]
gi|165900936|gb|EDR27150.1| cold-inducible RNA-binding protein, putative [Entamoeba dispar
SAW760]
Length = 138
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L++G+L Y V E L F + G V +V+ RE+ RS GFGFVT E+A+K +E
Sbjct: 2 TRLYIGSLAYSVTDESLRAAFEKFGTVTDCKVVTDRESQRSKGFGFVTFEKDEDAKKAIE 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 EMNEQE 67
>gi|393213816|gb|EJC99311.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 258
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LF GNL Y V + L LF +AG V ++V + +RS G+G V +++ E+A + V+M
Sbjct: 72 QLFAGNLPYRVRWQDLKDLFRRAGTVLRADVSLSPD-NRSRGYGTVLLASAEDAGRAVDM 130
Query: 88 FNRYE 92
FN Y
Sbjct: 131 FNGYN 135
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 33 NLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91
+L + + L LF QAG + ++V + RS GFG VT + +AE+ V MFN Y
Sbjct: 197 HLPFHCQWQDLKDLFRQAGTILRADVSLGPD-GRSRGFGTVTYANEIDAERAVAMFNGY 254
>gi|374376206|ref|ZP_09633864.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373233046|gb|EHP52841.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 110
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL +++ + L +LF G V ++++ + T+RS GFGFV M+T EEA+ +E
Sbjct: 3 IYVGNLSWNLKDQDLQNLFAPYGEVTSAKIVSDKFTNRSKGFGFVEMATDEEAKAAIEAL 62
Query: 89 NRYE 92
N E
Sbjct: 63 NGTE 66
>gi|404403808|ref|ZP_10995392.1| RNP-1 like RNA-binding protein [Alistipes sp. JC136]
Length = 105
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++V +L + SE L +LF Q G V + VI RET RS GFGFV M E+A K +E
Sbjct: 2 NIYVSHLSWGTSSEGLGNLFAQFGEVASANVITDRETGRSRGFGFVEMPDDEQARKAMEQ 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|338706322|ref|YP_004673090.1| putative RNA-binding protein [Treponema paraluiscuniculi Cuniculi
A]
gi|378972859|ref|YP_005221463.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378973926|ref|YP_005222532.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378974988|ref|YP_005223596.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
DAL-1]
gi|378981835|ref|YP_005230140.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. CDC2]
gi|384421880|ref|YP_005631239.1| glycine-rich RNA-binding protein 2 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|291059746|gb|ADD72481.1| glycine-rich RNA-binding protein 2 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|335344383|gb|AEH40299.1| probable RNA-binding protein [Treponema paraluiscuniculi Cuniculi
A]
gi|374677182|gb|AEZ57475.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678252|gb|AEZ58544.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679321|gb|AEZ59612.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|374680386|gb|AEZ60676.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
DAL-1]
Length = 89
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 37/67 (55%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
AK++VGNL Y LA LF+Q G V VI + T RS GFGFV M + E AE V+
Sbjct: 2 SAKIYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSKGFGFVEMESAESAELVI 61
Query: 86 EMFNRYE 92
N E
Sbjct: 62 NELNEKE 68
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL Y+V+ + L F Q G V+ +I + + RS GFGFV MS+ EA+ +E
Sbjct: 2 KIYVGNLSYEVNEDDLRQAFEQLGKVDSVSIINDKYSGRSKGFGFVEMSSDAEAQAAIEG 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|82248148|sp|Q9PTX2.1|CIRBP_RANCA RecName: Full=Cold-inducible RNA-binding protein; Short=BFCIRP;
AltName: Full=Glycine-rich RNA-binding protein CIRP
gi|6682989|dbj|BAA88978.1| BFCIRP [Rana catesbeiana]
Length = 164
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D D + L +F++ G ++ V+ RET RS GFGFVT E+A+
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MAGMN 68
>gi|344924967|ref|ZP_08778428.1| RNA-binding region RNP-1 [Candidatus Odyssella thessalonicensis
L13]
Length = 94
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ KL+V NL Y V+ + LA LF G V ++VI + + RS GFGFV M + ++A +
Sbjct: 2 NNKLYVSNLPYSVNDQTLAQLFGDHGAVVSAKVITDKMSGRSKGFGFVEMESEQQANSAM 61
Query: 86 EMFN 89
E N
Sbjct: 62 EKLN 65
>gi|406834935|ref|ZP_11094529.1| RNP-1 like RNA-binding protein [Schlesneria paludicola DSM 18645]
Length = 123
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
L+VGNL Y+ ++ L LF+Q G V ++V+ RET RS GFGFV MS EA
Sbjct: 4 NLYVGNLSYNCTADDLRELFSQHGNVSSAQVVSDRETGRSRGFGFVEMSDGGEA 57
>gi|402222221|gb|EJU02288.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731
SS1]
Length = 218
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL Y V + L LF +AG V ++V + +RS G+G V ++T E+A + ++M
Sbjct: 24 QLYVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGSD-NRSRGYGTVLLATAEDAGRAIDM 82
Query: 88 FNRY 91
FN Y
Sbjct: 83 FNGY 86
>gi|197128622|gb|ACH45120.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
Length = 171
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + E L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEESLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|239813338|ref|YP_002942248.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239799915|gb|ACS16982.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 137
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F + G + ++V+ R+T RS GFGFV M T EA VE
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGSIVSAKVMMERDTGRSKGFGFVEMGTDAEALAAVEA 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|150007319|ref|YP_001302062.1| RNA binding protein [Parabacteroides distasonis ATCC 8503]
gi|256839608|ref|ZP_05545117.1| RNA binding protein [Parabacteroides sp. D13]
gi|298375305|ref|ZP_06985262.1| RNA-binding protein [Bacteroides sp. 3_1_19]
gi|423332150|ref|ZP_17309934.1| hypothetical protein HMPREF1075_01947 [Parabacteroides distasonis
CL03T12C09]
gi|149935743|gb|ABR42440.1| RNA binding protein [Parabacteroides distasonis ATCC 8503]
gi|256738538|gb|EEU51863.1| RNA binding protein [Parabacteroides sp. D13]
gi|298267805|gb|EFI09461.1| RNA-binding protein [Bacteroides sp. 3_1_19]
gi|409229991|gb|EKN22863.1| hypothetical protein HMPREF1075_01947 [Parabacteroides distasonis
CL03T12C09]
Length = 81
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+++GNL Y V L + + G+V+ ++I R+T RS GF F M V+EA+K +E
Sbjct: 3 IYIGNLSYRVRESDLQQVLEEYGIVDSVKLIVDRDTRRSKGFAFAEMPNVDEAQKAIEEL 62
Query: 89 NRYE 92
N+ E
Sbjct: 63 NQAE 66
>gi|406994267|gb|EKE13283.1| hypothetical protein ACD_13C00045G0007 [uncultured bacterium]
Length = 134
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ +LFV L + ++L LF+++G V + VI + T +S GFGFV M T EEA K +
Sbjct: 2 NKRLFVAGLPFSTTQDELKTLFSESGTVVSATVIMDKMTGQSKGFGFVEMETTEEAAKAI 61
Query: 86 EMFNRYETG 94
N E G
Sbjct: 62 SSLNETEFG 70
>gi|213510736|ref|NP_001133148.1| cold inducible RNA binding protein [Salmo salar]
gi|197632151|gb|ACH70799.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219968|gb|ACM08645.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|221221054|gb|ACM09188.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 154
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D + LA F++ G + +VI RET R GFGFV E+A+
Sbjct: 3 DEGKLFVGGLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDA 62
Query: 85 VEMFN 89
+E N
Sbjct: 63 MEGMN 67
>gi|302338833|ref|YP_003804039.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
gi|301636018|gb|ADK81445.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
Length = 93
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y L LF Q G V ++++ RET RS GFGFV M + AE +
Sbjct: 4 KLYVGNLSYSSTEPGLEDLFGQYGQVVSAKIVLDRETKRSRGFGFVEMEQDDAAEAAISA 63
Query: 88 FNRYE 92
+ YE
Sbjct: 64 LDGYE 68
>gi|121607152|ref|YP_994959.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae
EF01-2]
gi|121551792|gb|ABM55941.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae
EF01-2]
Length = 122
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y E L F+Q G V ++V+ R+T RS GFGFV M + +A+ ++
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAQAQAAIQ 62
>gi|20975278|dbj|BAB92956.1| cold inducible RNA-binding protein beta [Hyla japonica]
Length = 166
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F + G +ISEV+ RET RS GFGFVT E+
Sbjct: 3 SSDEGKLFVGGLSFDTEEQNLEQVFGKYG--QISEVVVVKDRETQRSRGFGFVTFENPED 60
Query: 81 AEKVVEMFN 89
A+ +E N
Sbjct: 61 AKDAMEAMN 69
>gi|297733872|emb|CBI15119.3| unnamed protein product [Vitis vinifera]
Length = 163
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L Y D L F++ G V + VI RET RS GFGFVT ++ EEA ++
Sbjct: 40 SKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQ 99
Query: 87 MFN 89
+
Sbjct: 100 ALD 102
>gi|423196273|ref|ZP_17182856.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
gi|404632497|gb|EKB29102.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
Length = 92
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL Y + +++L +F+Q G V+ ++I R+T +S GFGF+ M EAEK +
Sbjct: 2 KIYVGNLSYRMTADELKTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAG 61
Query: 88 FNRYETG 94
+ E G
Sbjct: 62 LHGTEIG 68
>gi|221221302|gb|ACM09312.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 131
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D + LA F++ G + +VI RET R GFGFV E+A+
Sbjct: 3 DEGKLFVGGLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDA 62
Query: 85 VEMFN 89
+E N
Sbjct: 63 MEGMN 67
>gi|78184555|ref|YP_376990.1| RNA-binding region RNP-1 [Synechococcus sp. CC9902]
gi|78168849|gb|ABB25946.1| RNA-binding region RNP-1 [Synechococcus sp. CC9902]
Length = 81
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+F+GNL +D + E L HLF+Q G V + RET R GF FV + EE +K ++
Sbjct: 3 IFIGNLSWDAEREDLIHLFSQYGEVSKCSMPLDRETGRKRGFAFVDLGNAEEEKKAID 60
>gi|347819855|ref|ZP_08873289.1| RNP-1 like RNA-binding protein [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 128
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y E L F+Q G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 22 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIR 80
>gi|291514454|emb|CBK63664.1| RNA-binding proteins (RRM domain) [Alistipes shahii WAL 8301]
Length = 116
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++V +L + SE L +LF Q G V + VI RET RS GFGFV M EE +K ++
Sbjct: 2 NIYVSHLSWGTSSEGLGNLFMQFGEVASANVITDRETGRSRGFGFVEMPNEEEGQKAIDQ 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|119589928|gb|EAW69522.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
gi|119589930|gb|EAW69524.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
Length = 297
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|336373445|gb|EGO01783.1| hypothetical protein SERLA73DRAFT_177282 [Serpula lacrymans var.
lacrymans S7.3]
Length = 343
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR---ETDRSTGFGFVTMSTVEE 80
P LFV NL ++VD LA LF +AG+ +S I R + RS G+GFV + EE
Sbjct: 231 PSKTMLFVANLGFNVDDAGLASLFTEAGINVVSARIVRRRWGQPRRSKGYGFVDVGGEEE 290
Query: 81 AEKVVEMFNRYETG 94
+K +E E G
Sbjct: 291 QQKAIEALQGKEVG 304
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+F GNL Y E L F IS + R T RS G+GFV +++ E A+ V+
Sbjct: 30 KVFAGNLAYSTTDEGLKAFFAPVQDDIISAQVILRGT-RSAGYGFVALNSAEAAQTAVDQ 88
Query: 88 FNRYE 92
N E
Sbjct: 89 LNAQE 93
>gi|453086168|gb|EMF14210.1| hypothetical protein SEPMUDRAFT_82263 [Mycosphaerella populorum
SO2202]
Length = 436
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++FVGNL +D+ ++L+ F QAGVVE + + ++ + GFG++T + VE AEK V+
Sbjct: 195 RVFVGNLSFDITRDELSEHFAQAGVVEDVFLATFEDSGKCKGFGWITFADVESAEKAVKG 254
Query: 88 F 88
F
Sbjct: 255 F 255
>gi|430744003|ref|YP_007203132.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430015723|gb|AGA27437.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 143
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
KL+VGNL YD + L LF++ G V +++I R+T+RS GFGFV M+
Sbjct: 4 KLYVGNLTYDTTEDNLVELFSEYGEVLSAQIIIDRDTNRSKGFGFVEMA 52
>gi|427382637|ref|ZP_18879357.1| hypothetical protein HMPREF9447_00390 [Bacteroides oleiciplenus
YIT 12058]
gi|425729882|gb|EKU92733.1| hypothetical protein HMPREF9447_00390 [Bacteroides oleiciplenus
YIT 12058]
Length = 130
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++V NL ++ +S+ L LF Q G V + +I RET RS GFGFV M E+ +K ++
Sbjct: 2 NIYVANLSWNTNSDSLQELFTQYGEVTSAYIINDRETGRSRGFGFVEMPNDEDGQKAIDG 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|194385818|dbj|BAG65284.1| unnamed protein product [Homo sapiens]
Length = 263
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|333379577|ref|ZP_08471298.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
gi|332884970|gb|EGK05223.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
Length = 99
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+F+ L YDV+ L F + GV+ ++VI R T RS G+GFV M E+A K +
Sbjct: 2 NIFIAGLSYDVNDADLNTFFKEYGVINSAKVIMDRSTSRSKGYGFVEMDNNEDANKAISK 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|15639347|ref|NP_218796.1| RNA-binding protein, [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025589|ref|YP_001933361.1| RNA-binding protein [Treponema pallidum subsp. pallidum SS14]
gi|408502236|ref|YP_006869680.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|3322634|gb|AAC65342.1| RNA-binding protein, putative [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018164|gb|ACD70782.1| possible RNA-binding protein [Treponema pallidum subsp. pallidum
SS14]
gi|408475599|gb|AFU66364.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 105
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 37/67 (55%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
AK++VGNL Y LA LF+Q G V VI + T RS GFGFV M + E AE V+
Sbjct: 18 SAKIYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSKGFGFVEMESAESAELVI 77
Query: 86 EMFNRYE 92
N E
Sbjct: 78 NELNEKE 84
>gi|392593259|gb|EIW82584.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 116
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ + L F+ G V S V+ R+T RS GFGFVT S+ +EAE +
Sbjct: 4 AKIYVGNLSWNTTDDTLRQAFSTFGNVVDSVVMRDRDTGRSRGFGFVTYSSTQEAESAIS 63
Query: 87 MFN 89
N
Sbjct: 64 GLN 66
>gi|256839767|ref|ZP_05545276.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738697|gb|EEU52022.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 123
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L++ NL Y++ L LF G + ++VI RET RS GFGFV +S E A+K +E
Sbjct: 3 LYISNLSYNISDADLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEEL 62
Query: 89 NR 90
N+
Sbjct: 63 NQ 64
>gi|342882418|gb|EGU83098.1| hypothetical protein FOXB_06359 [Fusarium oxysporum Fo5176]
Length = 113
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG L + S+ L F++ G V + V+ RET RS GFGFVT S+ EEA +E
Sbjct: 2 SKLFVGGLAWATTSDTLRAKFSEFGEVTDAIVMTDRETGRSRGFGFVTFSSQEEASAAIE 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 AMNEQE 67
>gi|351699548|gb|EHB02467.1| Cold-inducible RNA-binding protein, partial [Heterocephalus
glaber]
Length = 167
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|344243389|gb|EGV99492.1| Cold-inducible RNA-binding protein [Cricetulus griseus]
Length = 184
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLFVG L +D E LA F + G + +VI +ET RS GFGFV E+A+
Sbjct: 2 SDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKD 61
Query: 84 VVEMFN 89
+E N
Sbjct: 62 ALEGMN 67
>gi|194385376|dbj|BAG65065.1| unnamed protein product [Homo sapiens]
Length = 142
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|150007850|ref|YP_001302593.1| RNA binding protein [Parabacteroides distasonis ATCC 8503]
gi|255013449|ref|ZP_05285575.1| RNA binding protein [Bacteroides sp. 2_1_7]
gi|256840108|ref|ZP_05545617.1| RNA binding protein [Parabacteroides sp. D13]
gi|262381649|ref|ZP_06074787.1| RNA binding protein [Bacteroides sp. 2_1_33B]
gi|298376789|ref|ZP_06986744.1| RNA-binding protein [Bacteroides sp. 3_1_19]
gi|301310122|ref|ZP_07216061.1| RNA-binding protein [Bacteroides sp. 20_3]
gi|410103697|ref|ZP_11298618.1| hypothetical protein HMPREF0999_02390 [Parabacteroides sp. D25]
gi|423331654|ref|ZP_17309438.1| hypothetical protein HMPREF1075_01451 [Parabacteroides distasonis
CL03T12C09]
gi|423336363|ref|ZP_17314110.1| hypothetical protein HMPREF1059_00062 [Parabacteroides distasonis
CL09T03C24]
gi|149936274|gb|ABR42971.1| RNA binding protein [Parabacteroides distasonis ATCC 8503]
gi|256739038|gb|EEU52363.1| RNA binding protein [Parabacteroides sp. D13]
gi|262296826|gb|EEY84756.1| RNA binding protein [Bacteroides sp. 2_1_33B]
gi|298266667|gb|EFI08325.1| RNA-binding protein [Bacteroides sp. 3_1_19]
gi|300831696|gb|EFK62327.1| RNA-binding protein [Bacteroides sp. 20_3]
gi|409230224|gb|EKN23092.1| hypothetical protein HMPREF1075_01451 [Parabacteroides distasonis
CL03T12C09]
gi|409236426|gb|EKN29233.1| hypothetical protein HMPREF0999_02390 [Parabacteroides sp. D25]
gi|409240838|gb|EKN33612.1| hypothetical protein HMPREF1059_00062 [Parabacteroides distasonis
CL09T03C24]
Length = 81
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+++GNL Y V L + + GVV+ ++I R+T RS GF F M EA+K +E
Sbjct: 3 IYIGNLNYRVRESDLQQILEEYGVVDSVKIIVDRDTKRSKGFAFAEMPNAAEAQKAIEEL 62
Query: 89 NRYE 92
N+ E
Sbjct: 63 NQAE 66
>gi|392579826|gb|EIW72953.1| hypothetical protein TREMEDRAFT_72942 [Tremella mesenterica DSM
1558]
Length = 475
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
E A ++VG L ++VD+E LA F G V + V+F + +S GFGFV T EEA
Sbjct: 207 EAEPTANVYVGGLSWNVDNEWLASEFQSCGEVVEARVMFDHQNQKSKGFGFVRFKTAEEA 266
Query: 82 EKVVEM 87
K V M
Sbjct: 267 AKAVAM 272
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L++G L YD++ + + F G ++ + RET GFG+V + V++A +E
Sbjct: 311 ATLYLGGLSYDLNEDAVYEAFGDFGDIQRVSLPTDRETGAPKGFGYVEFADVDQATAALE 370
Query: 87 MFNRYE 92
N E
Sbjct: 371 AMNGKE 376
>gi|325972712|ref|YP_004248903.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
gi|324027950|gb|ADY14709.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
Length = 92
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL Y+ E+L LF Q G V + +I RET R GFGFV M A+ +
Sbjct: 4 KIYVGNLSYNTSEEELRDLFAQYGTVVSANIIIDRETRRPKGFGFVEMQEDAAADAAISQ 63
Query: 88 FNRYETG 94
+ E G
Sbjct: 64 LDGKEIG 70
>gi|323702365|ref|ZP_08114030.1| RNP-1 like RNA-binding protein [Desulfotomaculum nigrificans DSM
574]
gi|333924078|ref|YP_004497658.1| RNP-1 like RNA-binding protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323532671|gb|EGB22545.1| RNP-1 like RNA-binding protein [Desulfotomaculum nigrificans DSM
574]
gi|333749639|gb|AEF94746.1| RNP-1 like RNA-binding protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 85
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VGNL + +E L F+Q G V S VI RET RS GFGFV + E+AEK++
Sbjct: 2 ATLYVGNLPWATKAEDLTDAFSQYGEVLGSRVITDRETGRSRGFGFVEVRD-EDAEKMIA 60
Query: 87 MFNRYETG 94
N E G
Sbjct: 61 ALNGTELG 68
>gi|299742217|ref|XP_001832319.2| hypothetical protein CC1G_07706 [Coprinopsis cinerea okayama7#130]
gi|298405084|gb|EAU89480.2| hypothetical protein CC1G_07706 [Coprinopsis cinerea okayama7#130]
Length = 1711
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 13 GDGSEVDYSEPPEDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
G + D P D + LFVGNL Y V + L LF +AG V ++V + +RS G+
Sbjct: 279 GGSRDRDMRVPARDTRTLLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPD-NRSRGY 337
Query: 71 GFVTMSTVEEAEKVVEMFNRYE 92
G V ++T E+A + ++MFN Y+
Sbjct: 338 GTVLLATAEDAGRAIDMFNGYD 359
>gi|426386443|ref|XP_004059694.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Gorilla
gorilla gorilla]
gi|426386445|ref|XP_004059695.1| PREDICTED: cold-inducible RNA-binding protein isoform 3 [Gorilla
gorilla gorilla]
Length = 168
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|224137878|ref|XP_002322674.1| predicted protein [Populus trichocarpa]
gi|222867304|gb|EEF04435.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VG L ++ SE L + F + G +E V + ++T+ S GFGFVT TVE A+K ++
Sbjct: 160 KLYVGGLSPEISSEMLLNFFGRYGDIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAID 218
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P KLFV L ++ SE L F G +E VI+ + T +S G+GF+T +E A+
Sbjct: 65 PVHRKLFVRGLAWNTTSETLCAAFQMHGEIEEGAVIYDKATGKSRGYGFITYKHMESAQS 124
Query: 84 VVEMFNR 90
+ +R
Sbjct: 125 ALGAPSR 131
>gi|428179994|gb|EKX48863.1| hypothetical protein GUITHDRAFT_151713 [Guillardia theta
CCMP2712]
Length = 160
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD-RSTGFGFVTMSTVEEAEKVV 85
KL+VGNL +D E L F+Q G V+ + VI R+ RS GFGFVT ST+ +AE +
Sbjct: 35 TKLYVGNLSFDTRGEDLMQYFSQFGKVDDTTVIMDRDDPGRSRGFGFVTYSTIADAEYAI 94
>gi|340379888|ref|XP_003388457.1| PREDICTED: RNA-binding protein 24-like [Amphimedon queenslandica]
Length = 214
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 43/92 (46%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG L Y +E L F Q G +E + VI R T +S G+GFVTM E+AEK
Sbjct: 17 KLFVGGLPYHTTNETLYDFFAQFGDIEEAVVIHDRVTSKSKGYGFVTMKHKEDAEKACAN 76
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDG 119
N G + ++K + L G
Sbjct: 77 PNPVIDGRKANVNLAYLGAKNKQQTPTSPLTG 108
>gi|226467816|emb|CAX69784.1| RNA-binding protein 38 [Schistosoma japonicum]
Length = 112
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K+FVG L Y E L F+Q G ++ + VI R+T +S G+GFVTMS E+A +
Sbjct: 12 TKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAI- 70
Query: 87 MFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125
R C G K N +A L + R +P
Sbjct: 71 ---RDPNPCIDG---------RKANVNLAVLGAKPRFMP 97
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG L Y D L F+Q G V + VI R+T RS GFGF++ + EEA ++
Sbjct: 40 SKLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASALQ 99
Query: 87 MFN 89
+
Sbjct: 100 AMD 102
>gi|73987334|ref|XP_868600.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Canis
lupus familiaris]
Length = 185
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|358059890|dbj|GAA94320.1| hypothetical protein E5Q_00970 [Mixia osmundae IAM 14324]
Length = 173
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG L + + L F+Q G V V+ RET RS GFGFVTMS AE+ +E
Sbjct: 22 KLFVGGLAWATTDDSLFSAFSQYGEVTDCIVMKDRETGRSRGFGFVTMSDPAAAEQAIEA 81
Query: 88 FN 89
N
Sbjct: 82 LN 83
>gi|299751777|ref|XP_001830476.2| glycine-rich RNA binding protein [Coprinopsis cinerea
okayama7#130]
gi|298409530|gb|EAU91356.2| glycine-rich RNA binding protein [Coprinopsis cinerea
okayama7#130]
Length = 142
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
AK++VGNL ++ + L F+Q G V S V+ R+T RS GFGFVT S EEA+ +
Sbjct: 3 AKVYVGNLSWNTTDDSLRQAFSQYGNVLDSIVMRDRDTGRSRGFGFVTYSATEEADAAI 61
>gi|223938031|ref|ZP_03629929.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223893245|gb|EEF59708.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 114
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++GNL +D + LF Q G V +I + T R+ GFGFVTMST E A+ V+
Sbjct: 3 KLYIGNLSFDATENDVQDLFAQHGPVTEVNLIMDKMTGRARGFGFVTMSTKEGADAAVQN 62
Query: 88 FN 89
N
Sbjct: 63 LN 64
>gi|134300357|ref|YP_001113853.1| RNP-1-like RNA-binding protein [Desulfotomaculum reducens MI-1]
gi|134053057|gb|ABO51028.1| RNP-1-like RNA-binding protein [Desulfotomaculum reducens MI-1]
Length = 85
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VGNL + +E LA F Q G V S VI RET RS GFGFV ++ +A+K++
Sbjct: 2 ATLYVGNLPWSTKAEDLASAFEQYGEVLSSRVITDRETGRSRGFGFVEVNDT-DADKMIA 60
Query: 87 MFNRYETG 94
N E G
Sbjct: 61 ALNGTELG 68
>gi|409044525|gb|EKM54006.1| hypothetical protein PHACADRAFT_257571 [Phanerochaete carnosa
HHB-10118-sp]
Length = 155
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ + L F+Q G + S V+ R+T RS GFGFVT S+ EA+ +
Sbjct: 3 AKVYVGNLSWNTTDDSLRTAFSQFGQILDSIVMRDRDTGRSRGFGFVTFSSANEAQTAIT 62
Query: 87 MFNRYE 92
N E
Sbjct: 63 SLNEQE 68
>gi|390941633|ref|YP_006405370.1| RRM domain-containing RNA-binding protein [Sulfurospirillum
barnesii SES-3]
gi|390194740|gb|AFL69795.1| RRM domain-containing RNA-binding protein [Sulfurospirillum
barnesii SES-3]
Length = 91
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGN++Y++ ++L +F+ G V + +I R+T RS GFGFV M EA+ +E
Sbjct: 3 IYVGNVKYEMTGDELKEMFSAYGEVSSARIISDRDTGRSKGFGFVEMPNDSEAKAAIEAT 62
Query: 89 NRYETG 94
N E G
Sbjct: 63 NEKEIG 68
>gi|321464133|gb|EFX75143.1| hypothetical protein DAPPUDRAFT_323682 [Daphnia pulex]
Length = 649
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++FV NL Y VD KL +F AG V ++EV+ R+ RS GFG + MS EA + + M
Sbjct: 276 RIFVANLDYKVDDAKLREVFRLAGKVVVAEVVKDRD-GRSRGFGVLQMSHPVEAVQAISM 334
Query: 88 FN 89
FN
Sbjct: 335 FN 336
>gi|76157398|gb|AAX28335.2| SJCHGC05136 protein [Schistosoma japonicum]
Length = 184
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L Y E L F+Q G ++ + VI R+T +S G+GFVTMS E+A +
Sbjct: 13 KIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAI-- 70
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125
R C G K N +A L + R +P
Sbjct: 71 --RDPNPCIDG---------RKANVNLAVLGAKPRFMP 97
>gi|344307815|ref|XP_003422574.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Loxodonta africana]
Length = 169
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|328953013|ref|YP_004370347.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM
11109]
gi|328453337|gb|AEB09166.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM
11109]
Length = 109
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL + + +L LF++AG V +++I R+T GFGFV M T E K + M
Sbjct: 4 KLYVGNLPHQMSESELQDLFSEAGYVVSAKIITDRQTGLPRGFGFVEMETKAEGAKAISM 63
Query: 88 FN 89
N
Sbjct: 64 IN 65
>gi|410343221|gb|JAA40557.1| cold inducible RNA binding protein [Pan troglodytes]
Length = 203
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 35 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 92
Query: 83 KVVEMFN 89
+ N
Sbjct: 93 DAMMAMN 99
>gi|392589109|gb|EIW78440.1| hypothetical protein CONPUDRAFT_60298, partial [Coniophora
puteana RWD-64-598 SS2]
Length = 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LFVGNL Y V + L LF +AG V ++V + +RS G+G V ++T E+A + ++M
Sbjct: 11 QLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPD-NRSRGYGTVLLATAEDAGRAIDM 69
Query: 88 FNRY 91
FN Y
Sbjct: 70 FNGY 73
>gi|320102269|ref|YP_004177860.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
gi|319749551|gb|ADV61311.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
Length = 129
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
+ KL+VGNL +D + L LF++ G V +++I RET+RS GFGF+ MS+
Sbjct: 3 NKKLYVGNLTFDTTEDNLIDLFSEYGEVVSAQIIIDRETNRSRGFGFIEMSS 54
>gi|297816490|ref|XP_002876128.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
gi|297321966|gb|EFH52387.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 22 EPPEDA--KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+P +A ++++GN+ V +E+L L + G VE +V++ + + RS FGF TM +VE
Sbjct: 69 DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVE 128
Query: 80 EAEKVVEMFN 89
+A VVE N
Sbjct: 129 DANAVVEKLN 138
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL V E L +LF++ G V ++V T +STGFGFVT S+ E+ E +
Sbjct: 179 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAILA 238
Query: 88 FN 89
N
Sbjct: 239 LN 240
>gi|291286869|ref|YP_003503685.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884029|gb|ADD67729.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
Length = 89
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y + + ++ LF++ G V+ +I R+T RS GFGFV M+ ++A+ ++
Sbjct: 3 IYVGNLSYSTNEDDISALFSKIGEVDSVRIITDRDTGRSKGFGFVEMANSDQAKAAIDKL 62
Query: 89 NRYE 92
N E
Sbjct: 63 NETE 66
>gi|119589931|gb|EAW69525.1| cold inducible RNA binding protein, isoform CRA_d [Homo sapiens]
Length = 311
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 16 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 73
Query: 83 KVVEMFN 89
+ N
Sbjct: 74 DAMMAMN 80
>gi|332529248|ref|ZP_08405212.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332041471|gb|EGI77833.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 110
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KL+VGNL Y V + L F G V+ ++V+ R++ RS GFGFV M + ++AE +
Sbjct: 3 SKLYVGNLSYSVRDDDLQQQFGAFGDVQSAKVMMDRDSGRSKGFGFVEMGSADQAEAAIR 62
>gi|308049961|ref|YP_003913527.1| RNP-1 like RNA-binding protein [Ferrimonas balearica DSM 9799]
gi|307632151|gb|ADN76453.1| RNP-1 like RNA-binding protein [Ferrimonas balearica DSM 9799]
Length = 90
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++GNL Y V SE L F G V + VI RET RS GFGFV M +E K ++
Sbjct: 2 NIYIGNLSYSVTSEDLQAAFAAHGEVLSANVIMDRETGRSKGFGFVEMPNSDEGLKAIQA 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|401401445|ref|XP_003881013.1| hypothetical protein NCLIV_040540 [Neospora caninum Liverpool]
gi|325115425|emb|CBZ50980.1| hypothetical protein NCLIV_040540 [Neospora caninum Liverpool]
Length = 434
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG L ++ L F Q G V SEV+F + T RS GFGF+T +T E +V +M
Sbjct: 122 KLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGFGFITFTTPEPVSRVADM 181
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LFVG + DV+ E L F G ++ + V+ R+ +R GFGFV ++AEK +
Sbjct: 215 RLFVGGISDDVNDESLRAYFRHYGEIQSANVMVDRQNNRPRGFGFVIFRNPDDAEKAIGP 274
Query: 88 FNRYETGC 95
+ C
Sbjct: 275 HKKLGVHC 282
>gi|281341352|gb|EFB16936.1| hypothetical protein PANDA_012739 [Ailuropoda melanoleuca]
Length = 167
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|57335945|emb|CAH25374.1| putative 29 kDa ribonucleoprotein A [Guillardia theta]
Length = 170
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD-RSTGFGFVTMSTVEEAEKVV 85
KL+VGNL +D E L F+Q G V+ + VI R+ RS GFGFVT ST+ +AE +
Sbjct: 45 TKLYVGNLSFDTRGEDLMQYFSQFGKVDDTTVIMDRDDPGRSRGFGFVTYSTIADAEYAI 104
>gi|149034582|gb|EDL89319.1| cold inducible RNA binding protein, isoform CRA_d [Rattus
norvegicus]
gi|149034583|gb|EDL89320.1| cold inducible RNA binding protein, isoform CRA_d [Rattus
norvegicus]
Length = 176
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|406886422|gb|EKD33455.1| hypothetical protein ACD_76C00026G0004 [uncultured bacterium]
Length = 83
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVGN+ +D L+ LF + G V ++++ + T RS GFGFV M+T E AE ++
Sbjct: 4 KLFVGNISWDATDSDLSKLFAEVGEVVSAQIVMDKLTGRSRGFGFVEMATDELAEAAIKA 63
Query: 88 FN 89
+
Sbjct: 64 LD 65
>gi|77735511|ref|NP_001029450.1| cold-inducible RNA-binding protein [Bos taurus]
gi|74353851|gb|AAI02774.1| Cold inducible RNA binding protein [Bos taurus]
gi|296485364|tpg|DAA27479.1| TPA: cold inducible RNA binding protein [Bos taurus]
Length = 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|73987338|ref|XP_868602.1| PREDICTED: cold-inducible RNA-binding protein isoform 4 [Canis
lupus familiaris]
Length = 219
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 51 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 108
Query: 83 KVVEMFN 89
+ N
Sbjct: 109 DAMMAMN 115
>gi|345313668|ref|XP_001512332.2| PREDICTED: cold-inducible RNA-binding protein-like
[Ornithorhynchus anatinus]
Length = 270
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|334339635|ref|YP_004544615.1| RNP-1 like RNA-binding protein [Desulfotomaculum ruminis DSM
2154]
gi|334090989|gb|AEG59329.1| RNP-1 like RNA-binding protein [Desulfotomaculum ruminis DSM
2154]
Length = 85
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VGNL + +E L F+Q G V S VI RET RS GFGFV ++ E+AEK+V
Sbjct: 2 ATLYVGNLPWATKAEDLQEAFSQYGEVISSRVITDRETGRSRGFGFVEVND-EDAEKMVA 60
Query: 87 MFN 89
N
Sbjct: 61 ALN 63
>gi|333379583|ref|ZP_08471304.1| hypothetical protein HMPREF9456_02899 [Dysgonomonas mossii DSM
22836]
gi|332884976|gb|EGK05229.1| hypothetical protein HMPREF9456_02899 [Dysgonomonas mossii DSM
22836]
Length = 96
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++V NL + SE L LF G VE +++I RET RS GFGFV M E +K ++
Sbjct: 2 NIYVSNLNFSTTSESLQELFTAYGEVESTKIITDRETGRSRGFGFVEMPNDAEGQKAIDE 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|261329063|emb|CBH12042.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 180
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 16 SEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET-DRSTGFGFVT 74
+E + P AKLFVG L ++ D ++L LF+ G VE ++ R++ +RS G FVT
Sbjct: 53 AESTHQASPTAAKLFVGQLPFETDEKRLYDLFSAYGTVEHIHIL--RDSQNRSKGAAFVT 110
Query: 75 MSTVEEAEKVV-EMFNRYE 92
S VEEA+ + + NRY+
Sbjct: 111 YSNVEEADTAIFTLHNRYK 129
>gi|72390724|ref|XP_845656.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176798|gb|AAX70896.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70802192|gb|AAZ12097.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 180
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 16 SEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET-DRSTGFGFVT 74
+E + P AKLFVG L ++ D ++L LF+ G VE ++ R++ +RS G FVT
Sbjct: 53 AESTHQASPTAAKLFVGQLPFETDEKRLYDLFSAYGTVEHIHIL--RDSQNRSKGAAFVT 110
Query: 75 MSTVEEAEKVV-EMFNRYE 92
S VEEA+ + + NRY+
Sbjct: 111 YSNVEEADTAIFTLHNRYK 129
>gi|148699638|gb|EDL31585.1| cold inducible RNA binding protein, isoform CRA_a [Mus musculus]
gi|149034578|gb|EDL89315.1| cold inducible RNA binding protein, isoform CRA_b [Rattus
norvegicus]
gi|149034579|gb|EDL89316.1| cold inducible RNA binding protein, isoform CRA_b [Rattus
norvegicus]
Length = 168
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|90076360|dbj|BAE87860.1| unnamed protein product [Macaca fascicularis]
Length = 207
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|426229493|ref|XP_004008825.1| PREDICTED: cold-inducible RNA-binding protein [Ovis aries]
Length = 171
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|389747681|gb|EIM88859.1| hypothetical protein STEHIDRAFT_52958 [Stereum hirsutum FP-91666
SS1]
Length = 209
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LFVGNL Y V + L LF +AG V ++V + +RS G+G V +++ E+A + V+M
Sbjct: 9 QLFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPD-NRSRGYGTVLLASAEDAGRAVDM 67
Query: 88 FNRYE 92
FN Y
Sbjct: 68 FNGYS 72
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 41 EKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
+ L LF QAG + ++V ++ RS GFG V +T +AE+ V+MFN
Sbjct: 161 QDLKDLFRQAGTILRADVALGQD-GRSRGFGTVVFATDMDAERAVKMFN 208
>gi|378727388|gb|EHY53847.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 179
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLF+G L + E L F+Q G +E + V+ R+T+RS GFGFV +T EA++ ++
Sbjct: 2 AKLFIGGLAWHTTDETLYEGFSQFGNIEEAVVVKDRDTNRSRGFGFVRFATKAEADEAMQ 61
Query: 87 MFN 89
N
Sbjct: 62 RMN 64
>gi|336386271|gb|EGO27417.1| hypothetical protein SERLADRAFT_413828 [Serpula lacrymans var.
lacrymans S7.9]
Length = 652
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR---ETDRSTGFGFVTMSTVEE 80
P LFV NL ++VD LA LF +AG+ +S I R + RS G+GFV + EE
Sbjct: 231 PSKTMLFVANLGFNVDDAGLASLFTEAGINVVSARIVRRRWGQPRRSKGYGFVDVGGEEE 290
Query: 81 AEKVVEMFNRYETG 94
+K +E E G
Sbjct: 291 QQKAIEALQGKEVG 304
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+F GNL Y E L F IS + R T RS G+GFV +++ E A+ V+
Sbjct: 30 KVFAGNLAYSTTDEGLKAFFAPVQDDIISAQVILRGT-RSAGYGFVALNSAEAAQTAVDQ 88
Query: 88 FNRYE 92
N E
Sbjct: 89 LNAQE 93
>gi|331212813|ref|XP_003307676.1| hypothetical protein PGTG_00626 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309298079|gb|EFP74670.1| hypothetical protein PGTG_00626 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 355
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+F+GNL + ++L +F + G EIS+V RS G+GFVT +T EEAEK V
Sbjct: 38 KVFIGNLSFATKDDQLREMFGKHG--EISDVQIIHRGTRSLGYGFVTFTTCEEAEKAVAA 95
Query: 88 FNRYE 92
++ E
Sbjct: 96 TDKNE 100
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR---ETDRSTGFGFVTMSTVE 79
PP LFV NL + V EKL LF+ V + V+ R RS GFGFV E
Sbjct: 245 PPSQTLLFVANLPFSVTDEKLKELFSGYKVAS-AHVVCRRYGTTVGRSKGFGFVDFEDQE 303
Query: 80 EAEKVVEMFNRYE 92
K +E E
Sbjct: 304 NQLKALEEVQAKE 316
>gi|209734900|gb|ACI68319.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|303657347|gb|ADM15872.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 114
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D + LA F++ G + +VI RET R GFGFV E+A+
Sbjct: 3 DEGKLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDA 62
Query: 85 VEMFN 89
++ N
Sbjct: 63 MDAMN 67
>gi|213513270|ref|NP_001133190.1| hyperosmotic glycine rich protein [Salmo salar]
gi|197632401|gb|ACH70924.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 126
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D + LA F++ G + +VI RET R GFGFV E+A+
Sbjct: 3 DEGKLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDA 62
Query: 85 VEMFN 89
++ N
Sbjct: 63 MDAMN 67
>gi|161408091|dbj|BAF94149.1| cold-inducible RNA binding protein [Alligator mississippiensis]
Length = 165
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|301776322|ref|XP_002923559.1| PREDICTED: cold-inducible RNA-binding protein-like [Ailuropoda
melanoleuca]
Length = 172
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|4502847|ref|NP_001271.1| cold-inducible RNA-binding protein [Homo sapiens]
gi|197102572|ref|NP_001124692.1| cold-inducible RNA-binding protein [Pongo abelii]
gi|386782231|ref|NP_001248245.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|397465267|ref|XP_003804430.1| PREDICTED: cold-inducible RNA-binding protein [Pan paniscus]
gi|426386441|ref|XP_004059693.1| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Gorilla
gorilla gorilla]
gi|5921786|sp|Q14011.1|CIRBP_HUMAN RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=A18 hnRNP; AltName: Full=Glycine-rich RNA-binding
protein CIRP
gi|75070980|sp|Q5RF83.1|CIRBP_PONAB RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|1060893|dbj|BAA11212.1| CIRP [Homo sapiens]
gi|2541973|gb|AAC51787.1| DNA damage-inducible RNA binding protein [Homo sapiens]
gi|2924760|gb|AAC04895.1| CIRP [Homo sapiens]
gi|12653269|gb|AAH00403.1| Cold inducible RNA binding protein [Homo sapiens]
gi|12654167|gb|AAH00901.1| Cold inducible RNA binding protein [Homo sapiens]
gi|30583259|gb|AAP35874.1| cold inducible RNA binding protein [Homo sapiens]
gi|55725420|emb|CAH89574.1| hypothetical protein [Pongo abelii]
gi|60654971|gb|AAX32049.1| cold inducible RNA binding protein [synthetic construct]
gi|67970531|dbj|BAE01608.1| unnamed protein product [Macaca fascicularis]
gi|119589926|gb|EAW69520.1| cold inducible RNA binding protein, isoform CRA_a [Homo sapiens]
gi|119589929|gb|EAW69523.1| cold inducible RNA binding protein, isoform CRA_a [Homo sapiens]
gi|157928054|gb|ABW03323.1| cold inducible RNA binding protein [synthetic construct]
gi|157928769|gb|ABW03670.1| cold inducible RNA binding protein [synthetic construct]
gi|197692151|dbj|BAG70039.1| cold inducible RNA binding protein [Homo sapiens]
gi|197692397|dbj|BAG70162.1| cold inducible RNA binding protein [Homo sapiens]
gi|261860266|dbj|BAI46655.1| cold inducible RNA binding protein [synthetic construct]
gi|343958578|dbj|BAK63144.1| cold-inducible RNA-binding protein [Pan troglodytes]
gi|383415637|gb|AFH31032.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|384940732|gb|AFI33971.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|410224774|gb|JAA09606.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410260066|gb|JAA17999.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410289136|gb|JAA23168.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343217|gb|JAA40555.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343219|gb|JAA40556.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343223|gb|JAA40558.1| cold inducible RNA binding protein [Pan troglodytes]
Length = 172
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|283781639|ref|YP_003372394.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
gi|283440092|gb|ADB18534.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
Length = 156
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + S L LF G V +EVI RET RS GFGFV M+ + E V
Sbjct: 4 RIYVGNLPWTYSSSDLEALFKPFGDVAAAEVIMDRETGRSRGFGFVQMANDADCEPAVNG 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|148699639|gb|EDL31586.1| cold inducible RNA binding protein, isoform CRA_b [Mus musculus]
Length = 176
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|125536731|gb|EAY83219.1| hypothetical protein OsI_38428 [Oryza sativa Indica Group]
Length = 257
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG L Y D + L F G V +++I RET RS GFGF+T ++ EEA +
Sbjct: 31 SKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAIT 90
Query: 87 MFN 89
+
Sbjct: 91 ALD 93
>gi|30585341|gb|AAP36943.1| Homo sapiens cold inducible RNA binding protein [synthetic
construct]
gi|61371531|gb|AAX43684.1| cold inducible RNA binding protein [synthetic construct]
gi|61371536|gb|AAX43685.1| cold inducible RNA binding protein [synthetic construct]
Length = 173
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|302769522|ref|XP_002968180.1| hypothetical protein SELMODRAFT_169811 [Selaginella moellendorffii]
gi|300163824|gb|EFJ30434.1| hypothetical protein SELMODRAFT_169811 [Selaginella moellendorffii]
Length = 296
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++G L Y+ +E L ++F++ G +E V + + T++S GF FVT TVE A ++
Sbjct: 125 KLYIGGLSYETSNETLLNIFSKYGEIEEGAVAYDKNTNKSRGFAFVTYKTVEAARNAIDD 184
Query: 88 FNR 90
N+
Sbjct: 185 PNK 187
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ P KLFV L ++ S+ L F Q G +E VI + T +S GFGF+T ++
Sbjct: 27 SKDPAHRKLFVRGLAWETTSQDLREAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMDS 86
Query: 81 AEKVVE 86
A++ ++
Sbjct: 87 AQRALK 92
>gi|221220658|gb|ACM08990.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|304376965|gb|ACI70202.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 161
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D + LA F++ G + +VI RET R GFGFV E+A+
Sbjct: 3 DEGKLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDA 62
Query: 85 VEMFN 89
++ N
Sbjct: 63 MDAMN 67
>gi|198285593|gb|ACH85335.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219546|gb|ACM08434.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 160
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D + LA F++ G + +VI RET R GFGFV E+A+
Sbjct: 3 DEGKLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDA 62
Query: 85 VEMFN 89
++ N
Sbjct: 63 MDAMN 67
>gi|168704267|ref|ZP_02736544.1| RNA-binding region RNP-1 [Gemmata obscuriglobus UQM 2246]
Length = 137
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KL+VGNL + V L +F G V ++VI R+T RS GFGFV M + +EA+ +
Sbjct: 4 KLYVGNLSWGVTDAMLQEMFTPYGAVVSAQVIMDRDTGRSKGFGFVEMGSDQEAQAAI 61
>gi|71897051|ref|NP_001026518.1| cold-inducible RNA-binding protein [Gallus gallus]
gi|53128363|emb|CAG31295.1| hypothetical protein RCJMB04_4m1 [Gallus gallus]
Length = 190
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|345567860|gb|EGX50762.1| hypothetical protein AOL_s00054g848 [Arthrobotrys oligospora ATCC
24927]
Length = 130
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L Y D +L F + GVVE + V+ R+T RS GFGFV S +EA E
Sbjct: 2 SKLFIGGLSYGTDDNRLRQKFEEFGVVEDAIVVKDRDTGRSRGFGFVRFSNDDEATAAQE 61
Query: 87 MFN 89
N
Sbjct: 62 AMN 64
>gi|428167060|gb|EKX36025.1| hypothetical protein GUITHDRAFT_117814 [Guillardia theta CCMP2712]
Length = 125
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD-RSTGFGFVTMSTVEEAE 82
P++ +++VGNL + V +E L + F + G V+ ++V+ RE RS GFGFV + E+A+
Sbjct: 34 PKEFQIYVGNLNWKVSNEDLKNFFGEFGDVKFAKVVMDRENPFRSRGFGFVGFANAEQAQ 93
Query: 83 KVVEMFNRYE 92
VE ++ E
Sbjct: 94 NAVEKCDQEE 103
>gi|356568734|ref|XP_003552565.1| PREDICTED: uncharacterized protein LOC100807155 [Glycine max]
Length = 244
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLFVG + Y D L F + G V +VI RET RS GFGFVT +T E+A ++
Sbjct: 40 AKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQ 99
>gi|255645506|gb|ACU23248.1| unknown [Glycine max]
Length = 243
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLFVG + Y D L F + G V +VI RET RS GFGFVT +T E+A ++
Sbjct: 40 AKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQ 99
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGN+ + +E+L + + G VE +EV++ + + RS F FVTM T E+A +E
Sbjct: 80 RLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTAEDANAAIEK 139
Query: 88 FNRYETG 94
N E G
Sbjct: 140 LNGTEIG 146
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL V ++ L + F++ G V ++V T +S+GFGFVT S+ E+ E +
Sbjct: 180 KVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISS 239
Query: 88 FN 89
FN
Sbjct: 240 FN 241
>gi|159472653|ref|XP_001694459.1| glycine-rich RNA-binding protein [Chlamydomonas reinhardtii]
gi|158276683|gb|EDP02454.1| glycine-rich RNA-binding protein [Chlamydomonas reinhardtii]
Length = 165
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL +D ++ L +LF++ G VE + V RET RS GFGFVT+
Sbjct: 4 KLYVGNLSWDTRADDLTNLFSKFGAVEDAFVATDRETGRSRGFGFVTLEA---------- 53
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAI 114
N ++ CS G M ++N+A
Sbjct: 54 -NAAKSACSECDGTEFMGRTIRVNEAT 79
>gi|268563939|ref|XP_002647049.1| C. briggsae CBR-CPF-2 protein [Caenorhabditis briggsae]
Length = 335
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ YDV E + +F +AG V +++ RET + G+GF+ + A+ + +
Sbjct: 14 VFVGNISYDVTEETIRQIFTKAGHVLSIKMVHDRETGKPKGYGFIEFPDIATADTAIRVL 73
Query: 89 NRYETG 94
N YE G
Sbjct: 74 NGYELG 79
>gi|387907184|ref|YP_006337520.1| RNA-binding protein [Blattabacterium sp. (Blaberus giganteus)]
gi|387582077|gb|AFJ90855.1| RNA-binding protein [Blattabacterium sp. (Blaberus giganteus)]
Length = 90
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET--DRSTGFGFVTMSTVEEAE 82
++ KL+VGNL YD+ ++L F G V ++IF T RS GFGF+ MS E A+
Sbjct: 2 DNTKLYVGNLSYDMTEQELKKYFESVGEVTHVKIIFDESTSSKRSKGFGFIEMSNEENAK 61
Query: 83 KVVEMFN 89
+ +E N
Sbjct: 62 QAIEKLN 68
>gi|339237675|ref|XP_003380392.1| RNA-binding protein 39 [Trichinella spiralis]
gi|316976770|gb|EFV59992.1| RNA-binding protein 39 [Trichinella spiralis]
Length = 680
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VG+L +++ E L +F G +E +++ ET RS G+GF+T E+A++ +E
Sbjct: 328 KLYVGSLHFNITEEMLRGIFEPFGKIESIQLLKDPETSRSRGYGFITFYNSEDAKRAMEQ 387
Query: 88 FNRYE 92
N +E
Sbjct: 388 LNGFE 392
>gi|449273022|gb|EMC82651.1| Cold-inducible RNA-binding protein [Columba livia]
Length = 153
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|4803739|dbj|BAA77512.1| cold-inducible RNA-binding protein [Ciona intestinalis]
Length = 158
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ K+FVGNL Y+ + L F+ +G VE +I RET RS GF FVT S+ EA +
Sbjct: 3 NCKVFVGNLSYNATEDDLRKHFSGSGQVEEVAIICDRETGRSRGFAFVTFSSEGEANDAI 62
Query: 86 EMFN 89
E N
Sbjct: 63 ENLN 66
>gi|355702927|gb|EHH29418.1| hypothetical protein EGK_09841 [Macaca mulatta]
Length = 202
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|309790385|ref|ZP_07684950.1| RNP-1 like RNA-binding protein [Oscillochloris trichoides DG-6]
gi|308227577|gb|EFO81240.1| RNP-1 like RNA-binding protein [Oscillochloris trichoides DG6]
Length = 99
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTM 75
KLFVGNL + +D +KL F G V+ + VI R+T RS GFGFV M
Sbjct: 4 KLFVGNLAWSIDDQKLESFFRAHGNVQSARVIHDRDTGRSRGFGFVEM 51
>gi|195997183|ref|XP_002108460.1| hypothetical protein TRIADDRAFT_51379 [Trichoplax adhaerens]
gi|190589236|gb|EDV29258.1| hypothetical protein TRIADDRAFT_51379 [Trichoplax adhaerens]
Length = 320
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
AKLF+GNL +D E LAH F+ G + +++I +T S GF FVT S+ EEA
Sbjct: 57 AKLFIGNLSWDTTLESLAHYFSSFGKLMDAKIIKDHDTGNSKGFAFVTYSSAEEA 111
>gi|441656594|ref|XP_003277032.2| PREDICTED: cold-inducible RNA-binding protein [Nomascus
leucogenys]
Length = 144
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|432101154|gb|ELK29438.1| Cold-inducible RNA-binding protein [Myotis davidii]
Length = 204
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|407790590|ref|ZP_11137683.1| RNA recognition motif-containing protein [Gallaecimonas
xiamenensis 3-C-1]
gi|407203713|gb|EKE73698.1| RNA recognition motif-containing protein [Gallaecimonas
xiamenensis 3-C-1]
Length = 88
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
LFV NL + V+++ LA LF Q G V+ + ++ +ET RS GFGFV M+ E ++
Sbjct: 3 LFVSNLSFRVEADALAQLFGQYGDVQRAHIVKDKETGRSRGFGFVEMADKATGENAIKAL 62
Query: 89 N 89
N
Sbjct: 63 N 63
>gi|320583460|gb|EFW97673.1| nuclear localization sequence binding protein [Ogataea
parapolymorpha DL-1]
Length = 500
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
E +P E A LFVG L + VD ++L F V + V+ RET RS G+G+V
Sbjct: 250 ETPSKKPKEVATLFVGRLAWAVDDQRLLEEFQSLDGVLSARVMTERETGRSRGYGYVDFE 309
Query: 77 TVEEAEKVVEMFNRYE 92
+ E+A+K +E F E
Sbjct: 310 SKEQAQKALEQFQGRE 325
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D P D LFVGNL + D + L F Q G V + + E+++ GFG+V +V
Sbjct: 358 DTPSQPSDT-LFVGNLSFQADRDTLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSV 416
Query: 79 EEAEKVVEMFN 89
+EA+ +E N
Sbjct: 417 DEAKAALEALN 427
>gi|256085101|ref|XP_002578762.1| rrm-containing protein seb-4 [Schistosoma mansoni]
Length = 475
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
+Y + K+FVG L Y E L F+Q G ++ + VI R+T +S G+GFVTM+
Sbjct: 4 NYQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMTRT 63
Query: 79 EEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125
E+A + R C G K N +A L + R++P
Sbjct: 64 EDALLAI----RDPNPCIDG---------RKANVNLAVLGAKPRLMP 97
>gi|355755275|gb|EHH59022.1| hypothetical protein EGM_09015 [Macaca fascicularis]
Length = 202
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|388494768|gb|AFK35450.1| unknown [Medicago truncatula]
Length = 176
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLF+G + Y D L F++ G V +++I R+T RS GFGF+T +T EEA ++
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 87 MFNRYE 92
+ E
Sbjct: 100 AMDNKE 105
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGN+ + +E+L + + G VE +EV++ + + RS F FVTM T E+A +E
Sbjct: 80 RLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTAEDANAAIEK 139
Query: 88 FNRYETG 94
N E G
Sbjct: 140 LNGTEIG 146
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL V ++ L + F++ G V ++V T +S+GFGFVT S+ E+ E +
Sbjct: 180 KVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISS 239
Query: 88 FN 89
FN
Sbjct: 240 FN 241
>gi|185133178|ref|NP_001117016.1| hyperosmotic glycine rich protein [Salmo salar]
gi|28173040|gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 205
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D + LA F++ G + +VI RET R GFGFV E+A+
Sbjct: 3 DEGKLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDA 62
Query: 85 VEMFN 89
++ N
Sbjct: 63 MDAMN 67
>gi|429242947|ref|NP_594207.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe 972h-]
gi|391358175|sp|Q9P3U1.3|YKX5_SCHPO RecName: Full=Uncharacterized RNA-binding protein C328.05
gi|347834162|emb|CAB96000.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe]
Length = 464
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
SEP D +LFVGNL Y+V + L LF QAG V +++ +E RS G G V MS+++E
Sbjct: 175 SEP--DRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKE 231
Query: 81 AEKVVEMFN 89
A ++M +
Sbjct: 232 AMHAIQMLH 240
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
Y P ++VGNL + L LF G V I I Y T RS GFG V
Sbjct: 303 YPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSV-IRARIAYEPTGRSKGFGVVQFENEN 361
Query: 80 EAEKVVEMFNRYETG 94
+A +E N Y G
Sbjct: 362 DAASSIEKLNGYRYG 376
>gi|328767490|gb|EGF77539.1| hypothetical protein BATDEDRAFT_35895 [Batrachochytrium
dendrobatidis JAM81]
Length = 314
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVGNL Y +++ L F AG V +++I R+ RS GFGFV+ T EA V++
Sbjct: 30 KVFVGNLPYRINTTALKDFFADAGTVVDTQLI--RKQGRSMGFGFVSFKTTAEATTAVDL 87
Query: 88 FNRYE 92
F++ E
Sbjct: 88 FHQKE 92
>gi|195050249|ref|XP_001992854.1| GH13506 [Drosophila grimshawi]
gi|193899913|gb|EDV98779.1| GH13506 [Drosophila grimshawi]
Length = 628
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 370 RLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDNETGRSKGYGFITYHNADDAKKALEQ 429
Query: 88 FNRYE 92
N +E
Sbjct: 430 LNGFE 434
>gi|326918654|ref|XP_003205603.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Meleagris gallopavo]
Length = 170
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|71668509|gb|AAZ38826.1| aggrecan promoter binding protein [Gallus gallus]
Length = 172
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|342181735|emb|CCC91214.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 177
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET-DRSTGFGFVTMSTVEEAE 82
P AKLFVG L ++ D ++L LF+ G VE ++ R++ +RS G FVT S+VEEA+
Sbjct: 58 PTAAKLFVGQLPFETDEKRLYDLFSAYGTVEHIHIL--RDSQNRSKGAAFVTYSSVEEAD 115
Query: 83 KVV-EMFNRYE 92
+ + NRY+
Sbjct: 116 AAIFTLHNRYK 126
>gi|89902981|ref|YP_525452.1| RNA-binding region RNP-1 [Rhodoferax ferrireducens T118]
gi|89347718|gb|ABD71921.1| RNA-binding region RNP-1 [Rhodoferax ferrireducens T118]
Length = 140
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y E L F G V ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYTFRDEDLQQAFAAHGTVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 88 FNRYETG 94
N + G
Sbjct: 64 MNGQQYG 70
>gi|327404450|ref|YP_004345288.1| RNP-1 like RNA-binding protein [Fluviicola taffensis DSM 16823]
gi|327319958|gb|AEA44450.1| RNP-1 like RNA-binding protein [Fluviicola taffensis DSM 16823]
Length = 188
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL +++ SE L F+ G V ++ V+F +T +S GFG+V M + EEA ++
Sbjct: 4 IFIANLDWEITSEDLLATFSAFGAVHLAHVVFDAKTKQSKGFGYVEMESAEEAINAIQAL 63
Query: 89 NRYE 92
N +E
Sbjct: 64 NGFE 67
>gi|307105138|gb|EFN53389.1| hypothetical protein CHLNCDRAFT_36600 [Chlorella variabilis]
Length = 321
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P AKLF+G L +D EKL F++ G + + V+ R+T R GFGFVT + A+
Sbjct: 6 PTSAKLFLGGLSWDTTEEKLRDHFSKYGSIVEAVVMRDRQTGRPRGFGFVTFTEPAAADA 65
Query: 84 VVE 86
VVE
Sbjct: 66 VVE 68
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 14 DGSEVDYSE------PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRS 67
DG ++D + P+ K+FVG L D ++ F+Q G V ++++ + RS
Sbjct: 74 DGRQIDAKKSVPQEMKPKARKVFVGGLSPDTTEDQFREYFSQFGEVVEAQIMQDHMSGRS 133
Query: 68 TGFGFVTMSTVEEAEKV 84
GFGFVT + AE V
Sbjct: 134 RGFGFVTFAEDASAESV 150
>gi|164659450|ref|XP_001730849.1| hypothetical protein MGL_1848 [Malassezia globosa CBS 7966]
gi|159104747|gb|EDP43635.1| hypothetical protein MGL_1848 [Malassezia globosa CBS 7966]
Length = 549
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+A+L+VGNL YD+ S+ + +F G ++ EV + T +S GF FV V EA++ +
Sbjct: 313 EARLYVGNLHYDITSQHVRVVFEPFGHLDEVEVCYNHMTGKSKGFAFVQFRNVHEAKQAM 372
Query: 86 EMFNRYE 92
E N +E
Sbjct: 373 EQLNGFE 379
>gi|119589927|gb|EAW69521.1| cold inducible RNA binding protein, isoform CRA_b [Homo sapiens]
Length = 184
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 14 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 71
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 72 AKDAMMAMN 80
>gi|431922216|gb|ELK19307.1| Cold-inducible RNA-binding protein [Pteropus alecto]
Length = 220
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|402903547|ref|XP_003914625.1| PREDICTED: cold-inducible RNA-binding protein [Papio anubis]
Length = 199
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVT 74
E + ++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT
Sbjct: 23 EAQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVT 80
Query: 75 MSTVEEAEKVVEMFN 89
+++A+ + N
Sbjct: 81 FENIDDAKDAMMAMN 95
>gi|6680946|ref|NP_031731.1| cold-inducible RNA-binding protein [Mus musculus]
gi|346644681|ref|NP_001231002.1| cold-inducible RNA-binding protein [Cricetulus griseus]
gi|46395643|sp|P60826.1|CIRBP_CRIGR RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=A18 hnRNP; AltName: Full=Glycine-rich RNA-binding
protein CIRP
gi|46397383|sp|P60825.1|CIRBP_RAT RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=A18 hnRNP; AltName: Full=Glycine-rich RNA-binding
protein CIRP
gi|46397384|sp|P60824.1|CIRBP_MOUSE RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=A18 hnRNP; AltName: Full=Glycine-rich RNA-binding
protein CIRP
gi|1060919|dbj|BAA11213.1| CIRP [Mus musculus]
gi|1783168|dbj|BAA19092.1| CIRP [Rattus norvegicus]
gi|12852647|dbj|BAB29491.1| unnamed protein product [Mus musculus]
gi|34099624|gb|AAQ57122.1| cold-inducible RNA binding protein [Cricetulus griseus]
gi|49522692|gb|AAH75699.1| Cold inducible RNA binding protein [Mus musculus]
gi|74209036|dbj|BAE21245.1| unnamed protein product [Mus musculus]
gi|115345819|gb|ABI95367.1| cold-inducible RNA-binding protein [Cricetulus griseus]
gi|148699640|gb|EDL31587.1| cold inducible RNA binding protein, isoform CRA_c [Mus musculus]
gi|149034580|gb|EDL89317.1| cold inducible RNA binding protein, isoform CRA_c [Rattus
norvegicus]
gi|149034581|gb|EDL89318.1| cold inducible RNA binding protein, isoform CRA_c [Rattus
norvegicus]
Length = 172
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|417397313|gb|JAA45690.1| Putative rasgap sh3 binding protein rasputin [Desmodus rotundus]
Length = 218
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|386346963|ref|YP_006045212.1| RNP-1 like RNA-binding protein [Spirochaeta thermophila DSM 6578]
gi|339411930|gb|AEJ61495.1| RNP-1 like RNA-binding protein [Spirochaeta thermophila DSM 6578]
Length = 100
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL Y + L LF Q G VE ++I R++ S GFGFV M++ E E +
Sbjct: 4 KIYVGNLNYQTTEDTLRQLFEQYGEVESVKIITDRDSGFSKGFGFVEMASEEAGEAAISA 63
Query: 88 FNRYE 92
N++E
Sbjct: 64 LNQHE 68
>gi|302788860|ref|XP_002976199.1| hypothetical protein SELMODRAFT_151090 [Selaginella moellendorffii]
gi|300156475|gb|EFJ23104.1| hypothetical protein SELMODRAFT_151090 [Selaginella moellendorffii]
Length = 343
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++G L Y+ +E L ++F++ G +E V + + T++S GF FVT TVE A ++
Sbjct: 172 KLYIGGLSYETSNETLLNIFSKYGEIEEGAVAYDKNTNKSRGFAFVTYKTVEAARNAIDD 231
Query: 88 FNR 90
N+
Sbjct: 232 PNK 234
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ P KLFV L ++ S+ L F Q G +E VI + T +S GFGF+T ++
Sbjct: 74 SKDPAHRKLFVRGLAWETTSQDLRDAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMDS 133
Query: 81 AEKVVE 86
A++ ++
Sbjct: 134 AQRALK 139
>gi|149195116|ref|ZP_01872208.1| hypothetical protein CMTB2_06431 [Caminibacter mediatlanticus
TB-2]
gi|149134829|gb|EDM23313.1| hypothetical protein CMTB2_06431 [Caminibacter mediatlanticus
TB-2]
Length = 83
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
++VGN+ YD ++E+L LF+Q G V +++I RET RS GFGF+ M +
Sbjct: 4 IYVGNINYDANAEELKELFSQYGEVLSAKIINDRETGRSKGFGFIEMES 52
>gi|353235203|emb|CCA67219.1| related to single-stranded TG1-3 binding protein [Piriformospora
indica DSM 11827]
Length = 306
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR---ETDRSTGFGFVTMSTVEE 80
P LFV NL + VD L+ LF AG+ IS + R + RS G+GFV + + E+
Sbjct: 193 PSKTMLFVANLGFSVDDAALSELFTSAGITVISARVVRRRWGQPRRSKGYGFVDVGSEEQ 252
Query: 81 AEKVVEMFNRYETG 94
+K +E+ E G
Sbjct: 253 QKKAIELLQGKEIG 266
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A +F GNL Y E L F+ IS + R T R G+GFV +T E A+K V+
Sbjct: 12 ADVFAGNLAYATTDEGLKTFFSPVADDIISCQVILRGT-RPAGYGFVAFNTAEAAQKAVD 70
Query: 87 MFNRYE 92
+ N+ E
Sbjct: 71 LLNKKE 76
>gi|403308137|ref|XP_003944528.1| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Saimiri
boliviensis boliviensis]
gi|403308139|ref|XP_003944529.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Saimiri
boliviensis boliviensis]
Length = 172
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|387018172|gb|AFJ51204.1| Cold-inducible RNA-binding protein-like [Crotalus adamanteus]
Length = 172
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|403173301|ref|XP_003332385.2| hypothetical protein PGTG_13770 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170218|gb|EFP87966.2| hypothetical protein PGTG_13770 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 965
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
LFVGNL +++ + L LF QAG + ++V E RS GFG V +T E+A K +EM+
Sbjct: 470 LFVGNLPFNLQWQDLKDLFRQAGNILRADVATTAE-GRSRGFGTVLFATAEDAMKALEMY 528
Query: 89 NRYE 92
+ YE
Sbjct: 529 DGYE 532
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LF+ NL + V + L LF +AG V ++V + +RS GFG V + +A K +E+
Sbjct: 35 QLFINNLPFRVRWQDLKDLFRKAGTVLRADVSLTPD-NRSKGFGTVLFANRNDAFKAIEI 93
Query: 88 FNRY 91
+N +
Sbjct: 94 YNGF 97
>gi|350538255|ref|NP_001232562.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
gi|197128621|gb|ACH45119.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
Length = 171
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|90077754|dbj|BAE88557.1| unnamed protein product [Macaca fascicularis]
Length = 172
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|428223294|ref|YP_007107464.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
gi|427996634|gb|AFY75329.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
Length = 165
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL ++D E L +F+++G ++I +T + GFGFVT+ T E A V+E
Sbjct: 4 RLYVGNLPAELDREGLEKIFSESGDSVSLKIISDTKTGKCRGFGFVTVETPEAATTVIEK 63
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124
FN Y+ F + KL +A+ GQ++ +
Sbjct: 64 FNGYD------FNGALL----KLEEALPRTKGQSKTI 90
>gi|160884538|ref|ZP_02065541.1| hypothetical protein BACOVA_02523 [Bacteroides ovatus ATCC 8483]
gi|237718602|ref|ZP_04549083.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|299145918|ref|ZP_07038986.1| RNA-binding protein [Bacteroides sp. 3_1_23]
gi|336413424|ref|ZP_08593776.1| hypothetical protein HMPREF1017_00884 [Bacteroides ovatus
3_8_47FAA]
gi|383111295|ref|ZP_09932108.1| hypothetical protein BSGG_4516 [Bacteroides sp. D2]
gi|423286638|ref|ZP_17265489.1| hypothetical protein HMPREF1069_00532 [Bacteroides ovatus
CL02T12C04]
gi|423296424|ref|ZP_17274509.1| hypothetical protein HMPREF1070_03174 [Bacteroides ovatus
CL03T12C18]
gi|156110277|gb|EDO12022.1| hypothetical protein BACOVA_02523 [Bacteroides ovatus ATCC 8483]
gi|229452062|gb|EEO57853.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298516409|gb|EFI40290.1| RNA-binding protein [Bacteroides sp. 3_1_23]
gi|313696981|gb|EFS33816.1| hypothetical protein BSGG_4516 [Bacteroides sp. D2]
gi|335938468|gb|EGN00358.1| hypothetical protein HMPREF1017_00884 [Bacteroides ovatus
3_8_47FAA]
gi|392670147|gb|EIY63632.1| hypothetical protein HMPREF1070_03174 [Bacteroides ovatus
CL03T12C18]
gi|392675325|gb|EIY68767.1| hypothetical protein HMPREF1069_00532 [Bacteroides ovatus
CL02T12C04]
Length = 81
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L++GNL Y+V L H+ + G V ++I RET RS GF F+ M EA K +E
Sbjct: 3 LYIGNLSYNVKESDLRHVMEEYGTVASVKLITDRETRRSKGFAFIEMPDDAEAAKAIEQL 62
Query: 89 N 89
N
Sbjct: 63 N 63
>gi|91786529|ref|YP_547481.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91695754|gb|ABE42583.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 134
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F G + ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|47271546|ref|NP_112409.2| cold-inducible RNA-binding protein [Rattus norvegicus]
gi|46623308|gb|AAH69219.1| Cold inducible RNA binding protein [Rattus norvegicus]
Length = 172
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|398803602|ref|ZP_10562623.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398096229|gb|EJL86556.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 133
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V E L F G + ++V+ R+T RS GFGFV M + EA+ +
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|302038618|ref|YP_003798940.1| putative RNA-binding protein RbpA [Candidatus Nitrospira
defluvii]
gi|300606682|emb|CBK43015.1| putative RNA-binding protein RbpA [Candidatus Nitrospira
defluvii]
Length = 108
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K++VG L Y ++L+ LF G VE + +I + T +S GFGFV M++ +EA+K +
Sbjct: 3 SKIYVGGLPYSATEQQLSDLFAVHGAVESARIITDKFTGQSRGFGFVEMASSDEAQKAIS 62
Query: 87 MFNRYETG 94
N + G
Sbjct: 63 ALNGTDMG 70
>gi|296232406|ref|XP_002761576.1| PREDICTED: cold-inducible RNA-binding protein [Callithrix
jacchus]
Length = 172
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|197128630|gb|ACH45128.1| putative cold inducible RNA binding protein variant 2c
[Taeniopygia guttata]
Length = 175
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|443695245|gb|ELT96187.1| hypothetical protein CAPTEDRAFT_148377 [Capitella teleta]
Length = 277
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F+ G ++ +++ ET RS G+GF+T T E+A+K +E
Sbjct: 2 RLYVGSLHFNITEEMLRGIFDPFGKIDDIKLMKNHETGRSQGYGFITFHTAEDAKKALEQ 61
Query: 88 FNRYE 92
N +E
Sbjct: 62 LNGFE 66
>gi|417408518|gb|JAA50808.1| Putative rna-binding protein seb4 rrm superfamily, partial
[Desmodus rotundus]
Length = 193
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 25 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 82
Query: 83 KVVEMFN 89
+ N
Sbjct: 83 DAMMAMN 89
>gi|74096251|ref|NP_001027768.1| glycine rich RNA binding protein [Ciona intestinalis]
gi|5911800|emb|CAB56042.1| glycine rich RNA binding protein [Ciona intestinalis]
Length = 162
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ K+FVGNL Y+ + L F+ +G VE +I RET RS GF FVT S+ EA +
Sbjct: 3 NCKVFVGNLSYNATEDDLRKHFSGSGQVEEVAIICDRETGRSRGFAFVTFSSEGEANDAI 62
Query: 86 EMFN 89
E N
Sbjct: 63 ENLN 66
>gi|168033888|ref|XP_001769446.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679366|gb|EDQ65815.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 108
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVGNL + D E L LF+ G V + + R++ RS GFGFVT+S+ E +E
Sbjct: 25 KLFVGNLSWRCDEEALETLFSDYGRVLEARIATERDSGRSRGFGFVTLSSETEVNAAIES 84
Query: 88 FN 89
+
Sbjct: 85 LD 86
>gi|388512303|gb|AFK44213.1| unknown [Medicago truncatula]
Length = 121
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 18 VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
++Y +KLF+G L Y+VD + L F G V + VI RET RS GFGF+ ++
Sbjct: 2 LNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFINFTS 61
Query: 78 VEEAEKVVEM 87
E A + M
Sbjct: 62 EESATSALSM 71
>gi|226482446|emb|CAX73822.1| RNA binding motif protein 24 [Schistosoma japonicum]
Length = 468
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L Y E L F+Q G ++ + VI R+T +S G+GFVTMS E+A +
Sbjct: 13 KIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAI-- 70
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125
R C G K N +A L + R +P
Sbjct: 71 --RDPNPCIDG---------RKANVNLAVLGAKPRFMP 97
>gi|197128626|gb|ACH45124.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
Length = 171
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|156841314|ref|XP_001644031.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156114664|gb|EDO16173.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 437
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E A +FVG L + VD E L + F G V + VI+ R TDRS G+G+V S+ AE+
Sbjct: 176 ETATIFVGRLSWSVDDEWLKNEFEHIGDVIGARVIYERGTDRSRGYGYVDFSSKSAAERA 235
Query: 85 VE 86
V+
Sbjct: 236 VK 237
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D P D LF+GNL ++ D +++ LF++ G + + + ET++ GFG+V V
Sbjct: 272 DVPSQPSDT-LFLGNLSFNADRDQIYELFSKHGEIISVRLPTHPETEQPKGFGYVQYGNV 330
Query: 79 EEAEKVVEMF 88
+A+ ++
Sbjct: 331 NDAQSALDAL 340
>gi|209154564|gb|ACI33514.1| RNA-binding protein 39 [Salmo salar]
Length = 525
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G +E +++ ET RS G+GF+T S E A+K ++
Sbjct: 250 RLYVGSLHFNITEEMLRGIFEPFGKIESIQLMMDSETGRSKGYGFITFSDTECAKKALDQ 309
Query: 88 FNRYE 92
N +E
Sbjct: 310 LNGFE 314
>gi|197128619|gb|ACH45117.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
gi|197128620|gb|ACH45118.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
gi|197128623|gb|ACH45121.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
gi|197128625|gb|ACH45123.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
gi|197128627|gb|ACH45125.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
gi|197128628|gb|ACH45126.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
Length = 171
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|189499100|ref|YP_001958570.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189494541|gb|ACE03089.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 90
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+++GNL Y + E+L+ F Q G V+ + +I +ET RS GFGFV M +EA+ ++
Sbjct: 2 NIYIGNLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAID 60
>gi|392568536|gb|EIW61710.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 345
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+F GNL Y E L F +S + R +RS G+GFV+++T+E A+K VE+
Sbjct: 31 KVFAGNLAYTTTDEGLKAFFAPVQSDVLSAQVIMRSGNRSAGYGFVSLTTLEAAQKAVEL 90
Query: 88 FNRYE 92
++ E
Sbjct: 91 LDKQE 95
Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR---ETDRSTGFGFVTMSTVEE 80
P LFV NL +++D E LA LF + S I R + +S G+GFV + EE
Sbjct: 228 PSKTVLFVANLGFNIDDEGLAKLFTDENIKVNSARIVRRRWGKPRKSKGYGFVDVGDEEE 287
Query: 81 AEKVVEMFNRYETG 94
+K +E E G
Sbjct: 288 QKKAIEALQGKEVG 301
>gi|34540433|ref|NP_904912.1| RNA-binding protein [Porphyromonas gingivalis W83]
gi|188994532|ref|YP_001928784.1| RNA-binding protein [Porphyromonas gingivalis ATCC 33277]
gi|334147542|ref|YP_004510471.1| RNA-binding protein [Porphyromonas gingivalis TDC60]
gi|419970956|ref|ZP_14486425.1| hypothetical protein HMPREF1322_0287 [Porphyromonas gingivalis
W50]
gi|34396746|gb|AAQ65811.1| RNA-binding protein [Porphyromonas gingivalis W83]
gi|188594212|dbj|BAG33187.1| RNA-binding protein [Porphyromonas gingivalis ATCC 33277]
gi|333804698|dbj|BAK25905.1| RNA-binding protein [Porphyromonas gingivalis TDC60]
gi|392609600|gb|EIW92405.1| hypothetical protein HMPREF1322_0287 [Porphyromonas gingivalis
W50]
Length = 97
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
++VGNL Y V E L L Q G V + VI RET RS GFGFV M +A + +E
Sbjct: 5 IYVGNLNYRVREEDLTGLLQQYGAVTSARVITDRETGRSRGFGFVEMEDENDARRAIE 62
>gi|392592716|gb|EIW82042.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 589
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 13 GDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGF 72
GD +VD E +FVG L ++VD++ LA F + G V + V R T RS GFG+
Sbjct: 323 GDAMDVD----NEIKSIFVGRLSWNVDNDWLAKEFAECGEVVSATVQMDRSTGRSRGFGY 378
Query: 73 VTMSTVEEAEKVVEM 87
V ST E EK +E+
Sbjct: 379 VHFSTSEAVEKAIEL 393
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 10 ESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTG 69
++FGD + P A LFVGNL + ++ + L F++ G V+ + RE+ R G
Sbjct: 422 KTFGD------TTSPPSATLFVGNLSFGMNDDALWEAFSEHGEVKNVRLPTDRESGRPKG 475
Query: 70 FGFVTMSTVEEAEK 83
FG+V S VE A+K
Sbjct: 476 FGYVEFSDVETAKK 489
>gi|198413013|ref|XP_002122562.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A/B,
partial [Ciona intestinalis]
Length = 277
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
EE+ DGS + + E K+FVG L +D D KL F Q G V + ET RS
Sbjct: 23 EEAVLDGSLIKQTSNDEKGKMFVGGLSWDTDEFKLKEYFEQFGQVRDCIIKRELETGRSR 82
Query: 69 GFGFVTMSTVEEAEKVVE 86
GFGF+ + +KVV+
Sbjct: 83 GFGFILFADASSVQKVVD 100
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 14 DGSEVDYSEPP---EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
DG +D + +D+KLFVG L D E + F + G V+ E R T + GF
Sbjct: 107 DGRNIDPKKAKALRKDSKLFVGGLNPDTTQETIQAHFEKFGEVDSIERPVDRNTGKHRGF 166
Query: 71 GFVTMSTVEEAEKVVEMFNRYET 93
F+T +++ NRY+T
Sbjct: 167 CFITFCKDGVIHDIIDN-NRYQT 188
>gi|432858816|ref|XP_004068953.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Oryzias latipes]
Length = 529
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 253 RLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 312
Query: 88 FNRYE 92
N +E
Sbjct: 313 LNGFE 317
>gi|395831301|ref|XP_003788741.1| PREDICTED: cold-inducible RNA-binding protein [Otolemur
garnettii]
Length = 172
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLF+G L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFIGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|372269331|ref|ZP_09505379.1| RNA-binding region RNP-1 (RNA recognition motif) [Alteromonas sp.
S89]
Length = 89
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++GNL Y V S++L F G + + VI RET RS GFGFV M +EA K +E
Sbjct: 2 NIYIGNLAYGVTSDELHEAFGAFGEISRATVITDRETGRSKGFGFVEMPNDDEARKAIEE 61
Query: 88 FN 89
N
Sbjct: 62 MN 63
>gi|196234692|ref|ZP_03133505.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196221240|gb|EDY15797.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 126
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL +D L F +AG V+ ++ + T RS GF FVTM+T +EA+K + +
Sbjct: 4 KLYVGNLSFDTTEVDLQDAFAEAGTVQEVALMQDKFTGRSRGFAFVTMATPDEAQKAISI 63
Query: 88 FN 89
F+
Sbjct: 64 FH 65
>gi|357421081|ref|YP_004928530.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803591|gb|AER40705.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 89
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET--DRSTGFGFVTMSTVEEAE 82
++ KL+VGNL Y++ ++L F G V +++IF T RS GFGF+ MS E A+
Sbjct: 2 DNTKLYVGNLSYEMTEQELKEHFESIGEVTHAKIIFDESTSNKRSKGFGFIEMSNEENAK 61
Query: 83 KVVEMFN 89
K +E N
Sbjct: 62 KAIEKLN 68
>gi|452848411|gb|EME50343.1| hypothetical protein DOTSEDRAFT_69017 [Dothistroma septosporum
NZE10]
Length = 516
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
+P LFVGNL ++VD E L F + G ++ VI R++ RS G+G+V + ++A
Sbjct: 248 DPAATGNLFVGNLSWNVDEEWLTREFEEFGAIKAVRVITDRDSGRSKGYGYVEFESADDA 307
Query: 82 EKVVEMFNRY 91
K +E + Y
Sbjct: 308 AKALEARHGY 317
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 20 YSEPPE--DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
Y + P A LFVGN+ +D + + +F + G + + RET GFG+V S+
Sbjct: 352 YGDTPSQPSATLFVGNISFDATQDMVTEVFQEYGSINAVRLPTDRETGAPKGFGYVEFSS 411
Query: 78 VEEAEKVVE 86
+EEA+ +E
Sbjct: 412 IEEAKSAME 420
>gi|444335495|ref|YP_007391864.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
gi|444299874|gb|AGD98111.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
Length = 90
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET--DRSTGFGFVTMSTVEEAE 82
++ KL+VGNL Y++ ++L + F G V +++IF T RS GFGF+ MS E A+
Sbjct: 2 DNTKLYVGNLSYEMTEQELKNYFESIGEVTHAKIIFDESTSNKRSKGFGFIEMSNEENAK 61
Query: 83 KVVEMFN 89
+ +E N
Sbjct: 62 QAIEKLN 68
>gi|159163576|pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 66
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 67 AKDAMMAMN 75
>gi|147774036|emb|CAN71872.1| hypothetical protein VITISV_038162 [Vitis vinifera]
Length = 272
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L Y D L F + G V + VI RET RS GFGFVT ++ EEA ++
Sbjct: 40 SKLFIGGLSYSTDDTSLREAFYKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQ 99
Query: 87 MFN 89
+
Sbjct: 100 ALD 102
>gi|343425960|emb|CBQ69492.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 319
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+D K+F GNL + E+L LF++AG V +++I R T RS G+GFVT ST E +
Sbjct: 25 DDKKVFAGNLAFATTEEQLKALFSEAGTVTHAQII-TRGT-RSLGYGFVTFSTDAEVQTA 82
Query: 85 VEMFNRYE 92
+++ N+ +
Sbjct: 83 IQLLNKRD 90
>gi|242067831|ref|XP_002449192.1| hypothetical protein SORBIDRAFT_05g006270 [Sorghum bicolor]
gi|241935035|gb|EES08180.1| hypothetical protein SORBIDRAFT_05g006270 [Sorghum bicolor]
Length = 499
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
+++VGNL +VD+ +L F++ G V + V+ + +T RS GFGFVT++TV + E+
Sbjct: 413 RIYVGNLSRNVDNYRLGQFFSKYGKVAEARVMCHIKTKRSRGFGFVTLATVVDHEQ 468
>gi|398810917|ref|ZP_10569726.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398081873|gb|EJL72641.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 134
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F + G + ++V+ R+T RS GFGFV M + EA +E
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGAIVSAKVMMERDTGRSKGFGFVEMGSDAEALAAIEA 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|319791037|ref|YP_004152677.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315593500|gb|ADU34566.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 138
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y V L F + G + ++V+ R+T RS GFGFV M + EA +E
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGAIVSAKVMMERDTGRSKGFGFVEMGSDAEALAAIEA 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|401423936|ref|XP_003876454.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492696|emb|CBZ27973.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV- 85
AKLFVG L ++ E+L +LF+ G VE I ++RS G F+T+STV+EA+ +
Sbjct: 102 AKLFVGQLPFECTEERLRNLFSAYGNVEHIH-ILRDNSNRSRGAAFITLSTVQEADTAIF 160
Query: 86 EMFNRYE 92
+ NRY
Sbjct: 161 TLHNRYR 167
>gi|145298735|ref|YP_001141576.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142851507|gb|ABO89828.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 92
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL Y + +++L +F+Q G V+ ++I R+T +S GFGF+ M +AEK +
Sbjct: 2 KIYVGNLSYRMTADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAG 61
Query: 88 FNRYETG 94
+ E G
Sbjct: 62 LHGTEIG 68
>gi|116070776|ref|ZP_01468045.1| RNA-binding region RNP-1 [Synechococcus sp. BL107]
gi|116066181|gb|EAU71938.1| RNA-binding region RNP-1 [Synechococcus sp. BL107]
Length = 81
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+F+GNL +D + E L HLF+Q G V + RET R GF FV + +E +K ++
Sbjct: 3 IFIGNLSWDAEREDLIHLFSQYGEVSKCSMPLDRETGRKRGFAFVDLGNADEEKKAID 60
>gi|354545437|emb|CCE42165.1| hypothetical protein CPAR2_807140 [Candida parapsilosis]
Length = 420
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 21 SEPPEDA--KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
S PED LFVG+L +V+ E L FN+ + + V++ +T RS G+GFVT S
Sbjct: 138 SSTPEDPTYNLFVGDLSSEVNDEALKKAFNKFDSFKEAHVMWDMQTSRSRGYGFVTFSKQ 197
Query: 79 EEAEKVVEMFN 89
E+AE ++ N
Sbjct: 198 EDAELALQTMN 208
>gi|255641990|gb|ACU21262.1| unknown [Glycine max]
Length = 220
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL++G+L +V SE L + F + G +E V + R+T+ S GFGFVT T E A+K ++
Sbjct: 42 KLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAID 100
>gi|157871215|ref|XP_001684157.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68127225|emb|CAJ05305.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 218
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV- 85
AKLFVG L ++ E+L +LF+ G VE I ++RS G F+T+STV+EA+ +
Sbjct: 101 AKLFVGQLPFECTEERLRNLFSAYGNVEHIH-ILRDNSNRSRGAAFITLSTVQEADTAIF 159
Query: 86 EMFNRYE 92
+ NRY
Sbjct: 160 TLHNRYR 166
>gi|449437591|ref|XP_004136575.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Cucumis sativus]
gi|449501907|ref|XP_004161491.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Cucumis sativus]
Length = 335
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL++G L D+ SE L + F + G +E V + ++T+ S GFGFVT +T E A+K ++
Sbjct: 157 KLYIGGLSPDITSEVLLNFFGRYGDIEEGSVAYDKDTNESRGFGFVTYTTAEAAKKAID 215
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P + KLFV L ++ SE L F+ G +E VI+ + T +S G+GF+T +E +
Sbjct: 62 PVNRKLFVRGLAWNTTSETLCAAFSVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTKA 121
Query: 84 VVEMFNR 90
++ ++
Sbjct: 122 ALKAPSK 128
>gi|301508557|gb|ADK78240.1| heterogeneous nuclear ribonucleoprotein A2 [Schmidtea mediterranea]
Length = 331
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG L+ DV +E L H F G + E++ ++++ S GFGFVT + +K + +
Sbjct: 109 KLFVGGLKKDVTTEHLRHYFTSYGTITDCEIVTWKDSGESRGFGFVTFDDYDPVDKAI-L 167
Query: 88 FNRYETGCSH 97
+ ++ G S
Sbjct: 168 YKPHQIGSSR 177
>gi|339898549|ref|XP_001470498.2| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|321398392|emb|CAM68874.2| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 221
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV- 85
AKLFVG L ++ E+L +LF+ G VE I ++RS G F+T+STV+EA+ +
Sbjct: 104 AKLFVGQLPFECTEERLRNLFSAYGNVEHIH-ILRDNSNRSRGAAFITLSTVQEADTAIF 162
Query: 86 EMFNRYE 92
+ NRY
Sbjct: 163 TLHNRYR 169
>gi|327290660|ref|XP_003230040.1| PREDICTED: cold-inducible RNA-binding protein-like [Anolis
carolinensis]
Length = 176
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>gi|398017101|ref|XP_003861738.1| hypothetical protein, conserved [Leishmania donovani]
gi|322499965|emb|CBZ35039.1| hypothetical protein, conserved [Leishmania donovani]
Length = 221
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV- 85
AKLFVG L ++ E+L +LF+ G VE I ++RS G F+T+STV+EA+ +
Sbjct: 104 AKLFVGQLPFECTEERLRNLFSAYGNVEHIH-ILRDNSNRSRGAAFITLSTVQEADTAIF 162
Query: 86 EMFNRYE 92
+ NRY
Sbjct: 163 TLHNRYR 169
>gi|215820610|ref|NP_001135964.1| RNA binding motif protein 39 [Nasonia vitripennis]
Length = 516
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G +E ++I ET RS G+GF+T ++A+K +E
Sbjct: 256 RLYVGSLLFNITEEMLKGIFEPFGKIENIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 315
Query: 88 FNRYE 92
N +E
Sbjct: 316 LNGFE 320
>gi|410949903|ref|XP_003981656.1| PREDICTED: cold-inducible RNA-binding protein [Felis catus]
Length = 172
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G + V+ RET RS GFGFVT +++A+
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|302810024|ref|XP_002986704.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
gi|300145592|gb|EFJ12267.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
Length = 730
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 7 GGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR 66
G EE+ D +E D +LFV NL Y E+LA LF Q G V +I +ET+R
Sbjct: 211 GNEEAAQDVAETD------TGRLFVRNLAYTTSEEELASLFGQYGEVVQVHLICDKETNR 264
Query: 67 STGFGFVTMSTVEEAEKVV 85
S G+G+V + EEA + +
Sbjct: 265 SKGYGYVGFTLPEEATRAM 283
Score = 35.0 bits (79), Expect = 9.8, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+++ V NL V +KL F G V ++V+ R+ +S FGFV + EEAE V
Sbjct: 5 SRVCVKNLPTYVTDDKLREHFGAKGQVTDAKVMRTRD-GKSRRFGFVGFYSQEEAESAVA 63
Query: 87 MFNR 90
FNR
Sbjct: 64 YFNR 67
>gi|296121841|ref|YP_003629619.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM
3776]
gi|296014181|gb|ADG67420.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM
3776]
Length = 146
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
L+VGNL Y ++ L F++ G V ++V+ RET RS GFGFV MS + AE+ VE
Sbjct: 4 NLYVGNLPYGTTADDLREAFSEHGTVTRAQVVSDRETGRSRGFGFVEMS--DGAERAVEA 61
Query: 88 FN 89
N
Sbjct: 62 MN 63
>gi|297789286|ref|XP_002862625.1| hypothetical protein ARALYDRAFT_920469 [Arabidopsis lyrata subsp.
lyrata]
gi|297792763|ref|XP_002864266.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297308263|gb|EFH38883.1| hypothetical protein ARALYDRAFT_920469 [Arabidopsis lyrata subsp.
lyrata]
gi|297310101|gb|EFH40525.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 222
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K+FV NL + E L + F + G + + V+FY++TDRS G+GFVT E A +
Sbjct: 12 TKIFVENLPWTTRQEGLVNFFKRFGEIIRANVVFYKKTDRSQGYGFVTFRDAESARNACK 71
Query: 87 MFN 89
N
Sbjct: 72 NPN 74
>gi|327398778|ref|YP_004339647.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
gi|327181407|gb|AEA33588.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
Length = 86
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L+VGNL Y ++L LF + G V +++I RET RS GFGFV MS ++A+K ++
Sbjct: 5 LYVGNLPYSTTEDELKELFGEYGEVSSTKIITDRETGRSRGFGFVEMSD-DDAQKAIDSL 63
Query: 89 N 89
N
Sbjct: 64 N 64
>gi|194332974|ref|YP_002014834.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
gi|194310792|gb|ACF45187.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
Length = 90
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++GNL Y++ + L FN+ G V+ + +I + + RS GFGFV M E+AEK ++
Sbjct: 2 NIYIGNLPYNITEDDLREAFNEFGQVDSANIIIDKFSGRSKGFGFVEMPNDEDAEKAIDS 61
Query: 88 FN 89
N
Sbjct: 62 LN 63
>gi|449486948|ref|XP_004157450.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 173
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K+FVG L Y D ++L F + G V + VI R+T RS GFGFVT E+A ++
Sbjct: 40 SKVFVGGLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQ 99
Query: 87 MFN 89
+
Sbjct: 100 ALD 102
>gi|449439323|ref|XP_004137435.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 171
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K+FVG L Y D ++L F + G V + VI R+T RS GFGFVT E+A ++
Sbjct: 40 SKVFVGGLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQ 99
Query: 87 MFN 89
+
Sbjct: 100 ALD 102
>gi|432858814|ref|XP_004068952.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Oryzias latipes]
Length = 502
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 226 RLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 285
Query: 88 FNRYE 92
N +E
Sbjct: 286 LNGFE 290
>gi|302673016|ref|XP_003026195.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune
H4-8]
gi|300099876|gb|EFI91292.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune
H4-8]
Length = 218
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVG L +DVD+++L F + G +E + V+ R+T S GFG+V +T E+A+K E
Sbjct: 5 VFVGGLPFDVDNDRLQQEFAKFGDIESAIVMMDRQTGNSRGFGYVHFATHEQAKKAKEEM 64
Query: 89 NRYE 92
+ YE
Sbjct: 65 DGYE 68
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
SEP + LFVGNL + + + LFN+ GV + + ET R GFG+V +E
Sbjct: 102 SEP--SSTLFVGNLSWSATEDAVWGLFNEYGVKNVRLPTEF-ETGRPKGFGYVEFEDIEG 158
Query: 81 AEKVVEMF 88
A+K E
Sbjct: 159 AKKAYEAL 166
>gi|293370299|ref|ZP_06616856.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|292634594|gb|EFF53126.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
Length = 84
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L++GNL Y+V L H+ + G V ++I RET RS GF F+ M EA K +E
Sbjct: 6 LYIGNLSYNVKESDLRHVMEEYGTVASVKLITDRETRRSKGFAFIEMPDDAEAAKAIEQL 65
Query: 89 N 89
N
Sbjct: 66 N 66
>gi|62955567|ref|NP_001017797.1| cold inducible RNA binding protein [Danio rerio]
gi|62202782|gb|AAH93299.1| Zgc:112425 [Danio rerio]
gi|63100518|gb|AAH95030.1| Zgc:112425 [Danio rerio]
gi|182889498|gb|AAI65256.1| Zgc:112425 protein [Danio rerio]
Length = 185
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLF+G L +D + L F++ GV+ V RET+RS GFGFVT ++A+
Sbjct: 2 SDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKD 61
Query: 84 VVEMFN 89
+E N
Sbjct: 62 ALEGMN 67
>gi|395513325|ref|XP_003760877.1| PREDICTED: cold-inducible RNA-binding protein [Sarcophilus
harrisii]
Length = 172
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G + V+ RET RS GFGFVT +++A+
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|388858494|emb|CCF47992.1| uncharacterized protein [Ustilago hordei]
Length = 315
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 15 GSEVDYSEPPED-AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
++ ++P ED K+F GNL + ++L LF++AG V ++++ R T RS G+GFV
Sbjct: 13 ANDAQVAKPQEDEKKVFAGNLAFATTEDELKTLFSEAGNVTHAQIV-TRGT-RSLGYGFV 70
Query: 74 TMSTVEEAEKVVEMFNRYETG 94
T ST EA+ +++ N+ + G
Sbjct: 71 TFSTEAEAQTAIQLLNKRDVG 91
>gi|34535789|dbj|BAC87434.1| unnamed protein product [Homo sapiens]
Length = 135
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++A+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|434391986|ref|YP_007126933.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
gi|428263827|gb|AFZ29773.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
Length = 160
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 28 KLFVGNL-RYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L++GNL + +++ ++L +F +AG ++VI R+T + GFGFVT+++ E+A++++E
Sbjct: 4 RLYIGNLPKEELERQELQAVFAEAGDSVTTKVIKDRKTGKCRGFGFVTVNSDEQADQIIE 63
Query: 87 MFNRY 91
FN Y
Sbjct: 64 KFNGY 68
>gi|402226431|gb|EJU06491.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 304
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 43 LAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
L LFNQ G VE +++ + +DRS GFGF+ M+TVE+A K + N
Sbjct: 88 LEELFNQYGTVEHVTIVYDQRSDRSRGFGFIQMATVEDATKCISELN 134
>gi|428305785|ref|YP_007142610.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428247320|gb|AFZ13100.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 102
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL YDV L+H+F + G V+ ++ RET R GFGFV MS+ E + +E
Sbjct: 3 IYVGNLSYDVKEGDLSHIFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSDAEEDAAIEAL 62
Query: 89 N 89
+
Sbjct: 63 D 63
>gi|402078039|gb|EJT73388.1| nuclear localization sequence binding protein [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 499
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 16 SEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTM 75
S+ D +E + A LFVG+L ++VD + L F G V + VI RET RS GFG+V
Sbjct: 242 SKTDAAESDKPATLFVGSLSWNVDDDMLKEEFKFCGEVVSARVITDRETGRSKGFGYVDF 301
Query: 76 STVEEAEKV 84
++ +AEK
Sbjct: 302 ASPADAEKA 310
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PE LFVGNL +D D + ++ F ++ + +E+ R GFG+V+ ++VE+A+
Sbjct: 351 PESDTLFVGNLPFDADEDVVSEFFGSVAEIKSLRLPTDQESGRRKGFGYVSFNSVEDAK 409
>gi|328863068|gb|EGG12168.1| hypothetical protein MELLADRAFT_115163 [Melampsora larici-populina
98AG31]
Length = 492
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ ++FV NL + +E L LF G V+ +EVIF E RS G G + TVEEAE +
Sbjct: 395 NQQIFVKNLPWSTSNEDLVELFQTTGKVQNAEVIF--EGGRSKGVGVIEFETVEEAETAI 452
Query: 86 EMFNRYETG 94
F Y G
Sbjct: 453 AKFQSYSYG 461
>gi|405963791|gb|EKC29337.1| RNA-binding protein 39 [Crassostrea gigas]
Length = 557
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G ++ ++I ET+RS G+GF+T E+A+K +E
Sbjct: 261 RLYVGSLHFNITEEMLRGIFEPFGKIDDIKLIRDHETNRSQGYGFITFHDSEDAKKALEQ 320
Query: 88 FNRYE 92
N +E
Sbjct: 321 LNGFE 325
>gi|115488680|ref|NP_001066827.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|77555842|gb|ABA98638.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113649334|dbj|BAF29846.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|125579440|gb|EAZ20586.1| hypothetical protein OsJ_36195 [Oryza sativa Japonica Group]
gi|215694288|dbj|BAG89281.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708787|dbj|BAG94056.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 258
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG L Y D + L F G V +++I RET RS GFGF+T ++ EEA +
Sbjct: 31 SKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAIT 90
Query: 87 MFN 89
+
Sbjct: 91 ALD 93
>gi|169772913|ref|XP_001820925.1| glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40]
gi|238490830|ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
gi|83768786|dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697065|gb|EED53406.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
Length = 125
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ + E L F++ G V + V+ RET RS GFGFVT S EA+ +
Sbjct: 4 AKVYVGNLSWNTNDESLRQTFSEFGNVLDAIVMKDRETGRSRGFGFVTFSAQTEADAAIG 63
Query: 87 MFNRYE 92
N E
Sbjct: 64 GLNEQE 69
>gi|346978360|gb|EGY21812.1| glycine-rich RNA-binding protein [Verticillium dahliae VdLs.17]
Length = 175
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L + E L F + G V+ + V+ R+T RS GFGFV S E+A+K ++
Sbjct: 2 SKLFIGGLAWHTTEETLRSRFEEFGAVDEAVVVKDRDTGRSRGFGFVRYSQDEDAQKAID 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 AMNNVE 67
>gi|334326698|ref|XP_001365067.2| PREDICTED: cold-inducible RNA-binding protein-like [Monodelphis
domestica]
Length = 172
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G + V+ RET RS GFGFVT +++A+
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|356526497|ref|XP_003531854.1| PREDICTED: uncharacterized protein LOC100818300 [Glycine max]
Length = 245
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLFVG + Y D L F + G V +VI RET RS GFGF+T +T E+A ++
Sbjct: 40 AKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASSAIQ 99
>gi|67483728|ref|XP_657084.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449705266|gb|EMD45349.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 136
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L++G+L Y V E L F + G V +V+ R++ RS GFGFVT E+A+K +E
Sbjct: 2 TRLYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIE 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 EMNEQE 67
>gi|407033602|gb|EKE36900.1| RNA recognition motif (RRM, RBD, or RNP domain) containing
protein [Entamoeba nuttalli P19]
Length = 136
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L++G+L Y V E L F + G V +V+ R++ RS GFGFVT E+A+K +E
Sbjct: 2 TRLYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIE 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 EMNEQE 67
>gi|313240807|emb|CBY33099.1| unnamed protein product [Oikopleura dioica]
Length = 252
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K+FVG L Y + L F+ G +E + VI R+T +S G+GFVTM+ E+A+K ++
Sbjct: 14 KIFVGGLPYHTTDDSLRQFFDVYGDIEEAVVITDRQTGKSRGYGFVTMAKKEDAQKAIQ 72
>gi|222423445|dbj|BAH19693.1| AT3G52150 [Arabidopsis thaliana]
Length = 253
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++++GN+ V +E+L L + G VE +V++ + + RS FGF TM +VE+A VVE
Sbjct: 77 RVYIGNIPRTVSNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 88 FN 89
N
Sbjct: 137 LN 138
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL V E L +LF++ G V ++V T +STGFGFVT S+ E+ E V
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAVVA 237
Query: 88 FN 89
N
Sbjct: 238 LN 239
>gi|242015973|ref|XP_002428613.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
gi|212513276|gb|EEB15875.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
Length = 593
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+T + ++A+K +E
Sbjct: 266 RLYVGSLHFNITEDMLRGIFEPFGKIDSIQLIMDPETGRSKGYGFITFHSADDAKKALEQ 325
Query: 88 FNRYE 92
N +E
Sbjct: 326 LNGFE 330
>gi|158338245|ref|YP_001519422.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|158308486|gb|ABW30103.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 137
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFN-QAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L+VGNL ++D ++LA LF + G + ++V+ R+T + GFGFVT+ T E+A++V+
Sbjct: 4 RLYVGNLPKELDRDELAALFTAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQVIA 63
Query: 87 MFN 89
N
Sbjct: 64 KLN 66
>gi|453089427|gb|EMF17467.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 501
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S P A LF+GNL ++VD E L F + G + +I R++ RS GFG+V + E+
Sbjct: 234 SNPDAVANLFIGNLSWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEFTNAED 293
Query: 81 AEKVVEMFN 89
A K +E N
Sbjct: 294 AAKALEAKN 302
Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 9 EESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
++ FGD EP A ++ GNL +D + + F + G V + R+T
Sbjct: 334 QQKFGDAP----GEP--TATIWCGNLSFDATEDVVREYFAEHGNVNSIRLPTDRDTGAPK 387
Query: 69 GFGFVTMSTVEEAEKVVEMFNRYETG 94
GFG+V M +VEEA+ + G
Sbjct: 388 GFGYVEMGSVEEAQAAFNALQGQDVG 413
>gi|220908811|ref|YP_002484122.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219865422|gb|ACL45761.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 158
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L+VGNL ++D ++L LF + G + ++V+ R+T + GFGFVT+ T E+A++V+E
Sbjct: 4 RLYVGNLPKELDRKELEALFATEVGEIGSTKVVTDRKTGKCRGFGFVTVETNEQADQVIE 63
Query: 87 MFN 89
N
Sbjct: 64 KLN 66
>gi|428185150|gb|EKX54003.1| hypothetical protein GUITHDRAFT_132430 [Guillardia theta CCMP2712]
Length = 162
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D KLFV + + + SE L F + G VE S V+ RET RS GF F+T S+ E A +
Sbjct: 58 DKKLFVSGIPFALSSEDLRETFEKFGPVEDSYVVKDRETGRSRGFAFITFSSKEAASQAC 117
Query: 86 EMFNRYETG 94
N + G
Sbjct: 118 SALNESDLG 126
>gi|624925|dbj|BAA05170.1| RNA-binding glycine rich protein [Nicotiana sylvestris]
gi|295393567|gb|ADG03639.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 259
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG L + D L F+Q G V + VI R+T RS GFGFV+ ++ EEA +
Sbjct: 40 SKLFVGGLSWGTDETSLKEAFSQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASALT 99
Query: 87 MFN 89
+
Sbjct: 100 ALD 102
>gi|162455692|ref|YP_001618059.1| RNA recognition motif-containing protein [Sorangium cellulosum So
ce56]
gi|161166274|emb|CAN97579.1| RNA-binding region RNP-1 (RNA recognition motif) [Sorangium
cellulosum So ce56]
Length = 139
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + + F Q+G V ++ RE+ +S GFGFVTM T E+A++ +E
Sbjct: 4 RLYVGNLPFSATKASVQAAFAQSGEVTDVHIVTDRESGQSRGFGFVTMGTPEQAQQAIEN 63
Query: 88 FN 89
N
Sbjct: 64 MN 65
>gi|308490983|ref|XP_003107683.1| CRE-CPF-2 protein [Caenorhabditis remanei]
gi|308250552|gb|EFO94504.1| CRE-CPF-2 protein [Caenorhabditis remanei]
Length = 345
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ YDV E + +F +AG V +++ RET + G+GF+ + A+ + +
Sbjct: 20 VFVGNISYDVTEETIRAIFAKAGHVMSIKMVHDRETGKPKGYGFIEFPDINTADTAIRVL 79
Query: 89 NRYETG 94
N YE G
Sbjct: 80 NGYELG 85
>gi|312095606|ref|XP_003148410.1| hypothetical protein LOAG_12851 [Loa loa]
Length = 233
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PP+ KLF+G L ++ E+L ++Q G V VI +T S GFGFVT +T++ AE
Sbjct: 58 PPQPRKLFIGGLSHETTDEQLRQYYSQWGTVVDCIVIRDPQTKYSRGFGFVTFATIQMAE 117
Query: 83 KVVEMFNRYET 93
M +R T
Sbjct: 118 AA--MADRPHT 126
>gi|154339389|ref|XP_001562386.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062969|emb|CAM39417.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 221
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV- 85
AKLFVG L ++ E+L +LF+ G VE I ++RS G F+T+STV+EA+ +
Sbjct: 104 AKLFVGQLPFECTEERLRNLFSAYGNVEHIH-ILRDNSNRSRGAAFITLSTVQEADTAIF 162
Query: 86 EMFNRYE 92
+ NRY
Sbjct: 163 TLHNRYR 169
>gi|302676373|ref|XP_003027870.1| hypothetical protein SCHCODRAFT_83413 [Schizophyllum commune H4-8]
gi|300101557|gb|EFI92967.1| hypothetical protein SCHCODRAFT_83413 [Schizophyllum commune H4-8]
Length = 226
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P A+L V NL Y++ L+ +F QAG + I Y + RSTG +T TV++A+K
Sbjct: 47 PASARLVVSNLHYELTPLDLSKIFGQAGTLVREPQIRYDRSGRSTGTAIITYETVDDAKK 106
Query: 84 VVEMF-NRYETGCSHGFGFFTMSDESK 109
+F N+ G + F + +
Sbjct: 107 AKNLFDNKTAKGQAMNIEFAALQPRPQ 133
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ +FVG L ++VD E L F G V + V R+T RS GFG+V+ ST E AEK +
Sbjct: 390 NCNIFVGKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAI 449
Query: 86 EMFNRYE 92
N E
Sbjct: 450 AEMNGKE 456
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 7 GGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR 66
G + FGD + E LFVGN+ ++ + + L F + G + + RET +
Sbjct: 476 GRAKQFGD------TVSAESKVLFVGNVSFNANEDMLWETFGEHGDIVSVRLPTDRETGQ 529
Query: 67 STGFGFVTMSTVEEAEKVVEMFN 89
GFG+V ++VE A+ N
Sbjct: 530 MKGFGYVEFTSVENAKSAFNALN 552
>gi|395644710|ref|ZP_10432570.1| RNP-1 like RNA-binding protein [Methanofollis liminatans DSM
4140]
gi|395441450|gb|EJG06207.1| RNP-1 like RNA-binding protein [Methanofollis liminatans DSM
4140]
Length = 86
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E + L+VGNL Y+ E+L+ LF+ G V+ + +I + GFGFV ++VEEAEK
Sbjct: 2 ESSTLYVGNLNYETTEEQLSELFSAYGDVKSARIIPRK------GFGFVEFASVEEAEKA 55
Query: 85 VEMFNRYETGC 95
+ N ET C
Sbjct: 56 MNALN--ETQC 64
>gi|327271618|ref|XP_003220584.1| PREDICTED: RNA-binding protein 39-like [Anolis carolinensis]
Length = 578
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 307 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 366
Query: 88 FNRYE 92
N +E
Sbjct: 367 LNGFE 371
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLFVG L +D E LA F + G + +VI +ET RS GFGFV E+A+
Sbjct: 2 SDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKD 61
Query: 84 VVEMFN 89
++ N
Sbjct: 62 ALDGMN 67
>gi|219848507|ref|YP_002462940.1| RNP-1 like RNA-binding protein [Chloroflexus aggregans DSM 9485]
gi|219542766|gb|ACL24504.1| RNP-1 like RNA-binding protein [Chloroflexus aggregans DSM 9485]
Length = 103
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVGNL + VD L F G V + VI RET RS GFGFV M V + KV+
Sbjct: 4 KLFVGNLAWSVDDATLEQFFQAYGDVRSARVINDRETGRSRGFGFVEMD-VTDVAKVISQ 62
Query: 88 FN 89
N
Sbjct: 63 TN 64
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y + + L LF Q G V ++V+ + + RS GF FV MS EE E +E
Sbjct: 3 IYVGNLPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIEKL 62
Query: 89 NRYE 92
N +E
Sbjct: 63 NGHE 66
>gi|390599102|gb|EIN08499.1| RNA-binding domain-containing protein, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 200
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LFVGNL Y V + L LF +AG V ++V + +RS G+G V +++ E+A + ++M
Sbjct: 6 QLFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPD-NRSRGYGTVLLASAEDAGRAIDM 64
Query: 88 FNRY 91
FN Y
Sbjct: 65 FNGY 68
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 41 EKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
+ L LF QAGV+ ++V ++ RS GFG V+ +T +AE+ V MFN
Sbjct: 150 QDLKDLFRQAGVILRADVALGQDG-RSRGFGMVSFATEADAERAVRMFN 197
>gi|356572088|ref|XP_003554202.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Glycine max]
Length = 336
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL++G+L +V SE L + F + G +E V + R+T+ S GFGFVT T E A+K ++
Sbjct: 158 KLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAID 216
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P KLFV L ++ SE L F + G +E VIF + T +S G+GF+T +E ++
Sbjct: 63 PAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIFDKVTGKSRGYGFITFKNMESTQQ 122
Query: 84 VVEMFNR 90
+ ++
Sbjct: 123 ALRAPSK 129
>gi|359806849|ref|NP_001241058.1| uncharacterized protein LOC100776344 [Glycine max]
gi|255634852|gb|ACU17785.1| unknown [Glycine max]
Length = 340
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL++G+L +V SE L + F + G +E V + R+T+ S GFGFVT T E A+K ++
Sbjct: 159 KLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAID 217
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P KLFV L ++ SE L F + G +E VI+ + T +S G+GF+T +E ++
Sbjct: 64 PAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQ 123
Query: 84 VVEMFNR 90
+ ++
Sbjct: 124 ALRAPSK 130
>gi|209154454|gb|ACI33459.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 206
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLFVG L +D D L F++ G + +V+ RET RS GFGFVT E+A+
Sbjct: 2 SDEGKLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKD 61
Query: 84 VVEMFN 89
+ N
Sbjct: 62 AMAAMN 67
>gi|167630741|ref|YP_001681240.1| RNA binding protein [Heliobacterium modesticaldum Ice1]
gi|167593481|gb|ABZ85229.1| RNA binding protein [Heliobacterium modesticaldum Ice1]
Length = 86
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L+VGNL + E L LF+ G V S +I RET RS GFGFV + E+AE++VE
Sbjct: 7 LYVGNLPWATKPENLTELFSPYGEVLSSRIITDRETGRSRGFGFVEVRD-EDAERMVEAM 65
Query: 89 N 89
N
Sbjct: 66 N 66
>gi|122890334|emb|CAJ74077.1| RNA recognition motif 1 [Guillardia theta]
Length = 199
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + KLFVG L ++VD ++L F + G E ++V+ R + RS GFGFVT S A
Sbjct: 84 PIDPLKLFVGGLSWEVDDQQLMEAFQEFGNCE-AKVMVDRYSGRSRGFGFVTFSEEHSAA 142
Query: 83 KVVEMFNRYE 92
K +E N E
Sbjct: 143 KAIEEMNGRE 152
>gi|261749498|ref|YP_003257184.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497591|gb|ACX84041.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 90
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET--DRSTGFGFVTMSTVEEAE 82
++ KL+VGNL Y++ ++L F G V +++IF T RS GFGF+ MS E A+
Sbjct: 2 DNTKLYVGNLSYEMTEQELKKYFESIGEVTHAKIIFDESTSNKRSKGFGFIEMSNEENAK 61
Query: 83 KVVEMFN 89
+ +E N
Sbjct: 62 QAIEKLN 68
>gi|169861389|ref|XP_001837329.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
gi|116502051|gb|EAU84946.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
Length = 569
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+ +FVG L ++VD++ LA F G +E + V R T +S GFG+V +TVE A+K
Sbjct: 325 QSKAVFVGQLSWNVDNDWLASEFASCGEIESATVQMDRNTGKSRGFGYVHFTTVEAAQKA 384
Query: 85 VEM 87
+E+
Sbjct: 385 LEL 387
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D + PP + LFVGNL ++ + + LFN GV + + RE+ R GFG+V V
Sbjct: 420 DVTSPPSNT-LFVGNLSFNTSEDSVWSLFNDYGVKSV-RLPTDRESGRPKGFGYVEFEDV 477
Query: 79 EEAEKVVEMFN 89
E A+K E N
Sbjct: 478 EGAKKAFEANN 488
>gi|395505312|ref|XP_003756986.1| PREDICTED: RNA-binding protein 39 [Sarcophilus harrisii]
Length = 557
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 284 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 343
Query: 88 FNRYE 92
N +E
Sbjct: 344 LNGFE 348
>gi|443310281|ref|ZP_21039939.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
gi|442779687|gb|ELR89922.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
Length = 168
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 28 KLFVGNL-RYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L++GNL + +V+ + L +F + G +++VI R+T + GFGFVT++ E A+K++E
Sbjct: 4 RLYIGNLPKEEVERQDLQAVFAEEGDSVVTKVIKDRKTGKCRGFGFVTVNDDEHADKIIE 63
Query: 87 MFNRY 91
FN Y
Sbjct: 64 KFNGY 68
>gi|357141664|ref|XP_003572305.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like
[Brachypodium distachyon]
Length = 250
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 1 EIGGFIGGEESFGDGS-EVDYSEP----------PEDAK--LFVGNLRYDVDSEKLAHLF 47
E G + E+ D + +VD+++P P K +FVGNL + V S L LF
Sbjct: 107 EKQGSVVSVETLNDRTIKVDFAKPRKKQPTVPSAPMQNKHIVFVGNLTWRVRSRHLRELF 166
Query: 48 NQAGVVEISEVIFYRETDR-STGFGFVTMSTVEEAEKVVEMFN 89
V+ EVIF T R S G+ FV+ S+ EEAE + FN
Sbjct: 167 ASTPGVQSVEVIFQTTTPRRSAGYAFVSFSSKEEAEAAISTFN 209
>gi|427794973|gb|JAA62938.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 509
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G ++ E+I ET+RS G+GF+T E+A+K +E
Sbjct: 253 RLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQ 312
Query: 88 FNRYE 92
N +E
Sbjct: 313 LNGFE 317
>gi|343429912|emb|CBQ73484.1| related to HRB1-Poly(A+) RNA-binding protein, involved in the
export of mRNAs from the nucleus to the cytoplasm
[Sporisorium reilianum SRZ2]
Length = 521
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++FV NL + +E L LF G V+ +E++F E RS G G V +TVE+AE +
Sbjct: 389 QIFVRNLPWSTSNEDLVELFQTTGKVDEAEIVF--EHGRSKGVGVVQFATVEDAETAIAK 446
Query: 88 FNRY 91
FN Y
Sbjct: 447 FNSY 450
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LFV NL YDV + L LF AG V ++V + RS G G V +A + M
Sbjct: 212 QLFVSNLPYDVSWQDLKDLFRSAGNVTRADVNMGPDG-RSKGTGIVAFGNSNDASNAIAM 270
Query: 88 FNRYE 92
++ Y+
Sbjct: 271 YHGYD 275
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK- 83
++ +++VGNL Y V L +AG V SEV+ S G G V S+ EEA+K
Sbjct: 77 KNCRVYVGNLSYGVKWNTLKDFMREAGNVVFSEVLTL-PNGSSKGCGIVEYSSPEEAQKA 135
Query: 84 VVEMFNR 90
+ +M N+
Sbjct: 136 ITQMTNK 142
>gi|261880310|ref|ZP_06006737.1| RNA-binding protein [Prevotella bergensis DSM 17361]
gi|270333000|gb|EFA43786.1| RNA-binding protein [Prevotella bergensis DSM 17361]
Length = 112
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+FV N+ Y +E L +LF G V + +I RET RS GFGFV M +EA+ +E
Sbjct: 2 NIFVSNINYRTQNESLLNLFASYGEVTSARIITDRETGRSRGFGFVEMPNDDEAKAAIEA 61
Query: 88 FN 89
N
Sbjct: 62 IN 63
>gi|226472210|emb|CAX77141.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 293
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K+FVG L+ DV +E L+ F+Q G V ++++ +ET+ S GF FVT + +KV+
Sbjct: 105 KIFVGALKKDVTNEDLSDYFSQFGTVTDAQIVIAKETNTSRGFAFVTFDDTDAVDKVI 162
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVT---MSTVE 79
+D KLF+G L D L + Q G EI +V+ ++ + +S GFGFVT S+V+
Sbjct: 12 QDKKLFIGGLSPKTDENSLKDYYGQWG--EIIDVVVMKDPRSQKSRGFGFVTYRDASSVD 69
Query: 80 EAE 82
A+
Sbjct: 70 AAQ 72
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++++GN+ V +E+L L + G VE +V++ + + RS FGF TM +VE+A VVE
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 88 FN 89
N
Sbjct: 137 LN 138
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL V E L +LF++ G V ++V T +STGFGFVT S+ E+ E +
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 88 FN 89
N
Sbjct: 238 LN 239
>gi|197632397|gb|ACH70922.1| elongation factor-1 delta-1 [Salmo salar]
Length = 203
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLFVG L +D D L F++ G + +V+ RET RS GFGFVT E+A+
Sbjct: 2 SDEGKLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKD 61
Query: 84 VVEMFN 89
+ N
Sbjct: 62 AMAAMN 67
>gi|193671655|ref|XP_001946102.1| PREDICTED: cleavage stimulation factor subunit 2-like
[Acyrthosiphon pisum]
Length = 388
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +FN+ G V ++++ RET + G+GF E A +
Sbjct: 14 VFVGNIPYEATEEKLKDIFNEVGPVISFKLVYDRETGKPKGYGFCEYKDQETALSAMRNL 73
Query: 89 NRYETG 94
N YE G
Sbjct: 74 NGYEIG 79
>gi|46115998|ref|XP_384017.1| hypothetical protein FG03841.1 [Gibberella zeae PH-1]
Length = 1163
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ + L + F G + S V+ R+T RS GFGFVT + +EAE +
Sbjct: 3 AKVYVGNLGWNTTDDSLRNAFQDYGQILDSIVMRDRDTGRSRGFGFVTFGSSQEAETAII 62
Query: 87 MFNRYE 92
N E
Sbjct: 63 SLNEQE 68
>gi|209737234|gb|ACI69486.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 146
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D D L F++ G + +V+ RET RS GFGFVT E+A+
Sbjct: 3 DEGKLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDA 62
Query: 85 VEMFN 89
+ N
Sbjct: 63 MAAMN 67
>gi|226529880|ref|NP_001150360.1| RNA binding protein [Zea mays]
gi|195638638|gb|ACG38787.1| RNA binding protein [Zea mays]
gi|414866145|tpg|DAA44702.1| TPA: RNA binding protein [Zea mays]
Length = 166
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%)
Query: 12 FGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFG 71
FGD +EV P LFV L EKL F G + ++V+ R + RS GFG
Sbjct: 45 FGDATEVANVPPLTTPNLFVSGLSRLTTDEKLQGAFAPFGRLLEAKVVTDRVSGRSKGFG 104
Query: 72 FVTMSTVEEAEKVVEMFN 89
FV +T+EEAE+ + N
Sbjct: 105 FVRYATIEEAERARQEMN 122
>gi|170585802|ref|XP_001897671.1| heterogeneous nuclear ribonucleoprotein A1,putative [Brugia malayi]
gi|158594978|gb|EDP33555.1| heterogeneous nuclear ribonucleoprotein A1,putative [Brugia malayi]
Length = 355
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PP+ KLF+G L ++ E+L ++Q G V VI +T S GFGFVT +T++ AE
Sbjct: 48 PPQPRKLFIGGLSHETTDEQLRQYYSQWGTVVDCIVIRDPQTKYSRGFGFVTFATIQMAE 107
Query: 83 KVVEMFNRYET 93
M +R T
Sbjct: 108 AA--MADRPHT 116
>gi|348511912|ref|XP_003443487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like
[Oreochromis niloticus]
Length = 301
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K+FVG L+ D++ + L F+Q G VE SEVI +ET + GFGFV + + A+K V
Sbjct: 98 KIFVGGLKDDIEEQHLTEYFSQYGQVEKSEVISEKETGKKRGFGFVYFTDHDAADKAV 155
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
KLFVG L D D + L F Q G + V+ ++ RS FGFVT ST EEA+
Sbjct: 6 CKLFVGGLNVDTDDDGLRKHFEQYGTLTDCVVVVNKQLQRSRCFGFVTYSTPEEAD 61
>gi|147900472|ref|NP_001086350.1| MGC81970 protein [Xenopus laevis]
gi|49522239|gb|AAH75146.1| MGC81970 protein [Xenopus laevis]
Length = 512
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 224 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 283
Query: 88 FNRYE 92
N +E
Sbjct: 284 LNGFE 288
>gi|403281374|ref|XP_003932163.1| PREDICTED: RNA-binding protein 39 [Saimiri boliviensis boliviensis]
Length = 502
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>gi|341874087|gb|EGT30022.1| hypothetical protein CAEBREN_23175 [Caenorhabditis brenneri]
Length = 335
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
+ + PP+ KLF+G L +D E+L + F+Q G V + VI T S GFGFVT +
Sbjct: 60 QYQHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFA 119
Query: 77 TVEEAEKVV 85
++ AE +
Sbjct: 120 SIFSAESAM 128
>gi|341889641|gb|EGT45576.1| hypothetical protein CAEBREN_06918 [Caenorhabditis brenneri]
Length = 348
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ YDV + + +F++AG V +++ RET + G+GF+ ++ A+ + +
Sbjct: 19 VFVGNISYDVTEDTIRAMFSKAGPVMSIKMVHDRETGKPKGYGFIEFPDIQTADTAIRVL 78
Query: 89 NRYETG 94
N +E G
Sbjct: 79 NGHELG 84
>gi|149244172|ref|XP_001526629.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449023|gb|EDK43279.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 510
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D PP D LF+GNL ++ + + L +F + G V V + +T + GFG+V S+V
Sbjct: 356 DSQSPPSDT-LFIGNLSFNANRDSLFEIFGEYGTVISCRVPTHPDTQQPKGFGYVQFSSV 414
Query: 79 EEAEKVVEMFN 89
+EA+ +E N
Sbjct: 415 DEAKAALEALN 425
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
E A LFVG L +++D + L F G V + VI R T +S G+G+V T
Sbjct: 258 EGATLFVGRLSWNIDDDWLKKEFEHLGDVIGARVIMERATGKSRGYGYVDFKT 310
>gi|25147057|ref|NP_741784.1| Protein H28G03.1, isoform c [Caenorhabditis elegans]
gi|351064184|emb|CCD72473.1| Protein H28G03.1, isoform c [Caenorhabditis elegans]
Length = 335
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
+ + PP+ KLF+G L +D E+L + F+Q G V + VI T S GFGFVT +
Sbjct: 59 QYQHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFA 118
Query: 77 TVEEAEKVV 85
++ AE +
Sbjct: 119 SIFSAESAM 127
>gi|115476954|ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|125561943|gb|EAZ07391.1| hypothetical protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR-STGFGFVTMSTVE 79
S P +FVGNL + V S L LF V+ EV+F+ + R S G+GFV+ S+ E
Sbjct: 159 SAPMPKHSVFVGNLTWRVRSRHLRELFASTPGVQSVEVVFHTTSPRRSAGYGFVSFSSKE 218
Query: 80 EAEKVVEMFN 89
AE + FN
Sbjct: 219 AAEAAISTFN 228
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L N+ +D ++ + LF + G V E+ Y T R+ G FVTM + EEA +
Sbjct: 74 RLIAQNIPWDCTADDMRALFGKHGSVVDVELSMYNST-RNRGLAFVTMGSEEEALSALNH 132
Query: 88 FN 89
N
Sbjct: 133 LN 134
>gi|427792527|gb|JAA61715.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 497
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G ++ E+I ET+RS G+GF+T E+A+K +E
Sbjct: 241 RLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQ 300
Query: 88 FNRYE 92
N +E
Sbjct: 301 LNGFE 305
>gi|170076900|ref|YP_001733538.1| RNA-binding protein [Synechococcus sp. PCC 7002]
gi|169884569|gb|ACA98282.1| RNA-binding protein [Synechococcus sp. PCC 7002]
Length = 84
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y V+ + L +FN G V+ + RET R GFGFV MS EE +K +E
Sbjct: 3 IYVGNLDYAVEEDDLREVFNDYGKVKRVYLPVDRETQRKRGFGFVEMSNDEEEDKAIEAL 62
Query: 89 N 89
+
Sbjct: 63 D 63
>gi|449265754|gb|EMC76900.1| RNA-binding protein 39, partial [Columba livia]
Length = 423
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 152 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 211
Query: 88 FNRYE 92
N +E
Sbjct: 212 LNGFE 216
>gi|326931688|ref|XP_003211958.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like
[Meleagris gallopavo]
Length = 571
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 300 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 359
Query: 88 FNRYE 92
N +E
Sbjct: 360 LNGFE 364
>gi|409991967|ref|ZP_11275186.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
gi|409937161|gb|EKN78606.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
Length = 93
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
++VGNL YDV + L+ F + G V+ S + RET RS GFGFV MS+ E+ EKV
Sbjct: 3 IYVGNLSYDVTPDDLSAAFAEYGTVKRSMIPTDRETGRSRGFGFVEMSS-EDEEKVA 58
>gi|259089109|ref|NP_001158591.1| cold inducible RNA binding protein [Oncorhynchus mykiss]
gi|225705082|gb|ACO08387.1| Cold-inducible RNA-binding protein [Oncorhynchus mykiss]
Length = 209
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLFVG L +D D L F++ G + +V+ RET RS GFGFVT E+A+
Sbjct: 2 SDEGKLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETRRSRGFGFVTFENPEDAKD 61
Query: 84 VVEMFN 89
+ N
Sbjct: 62 AMAAMN 67
>gi|238879474|gb|EEQ43112.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 399
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D PP D LF+GNL ++ + + L ++F + G V V + +T + GFG+V S+V
Sbjct: 263 DSQSPPSDT-LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSV 321
Query: 79 EEAEKVVEMFN 89
+EA+ +E N
Sbjct: 322 DEAKAALEAMN 332
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E A LFVG L +++D L F G V + VI R T +S G+G+V + AEK
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 85 VE 86
+E
Sbjct: 226 LE 227
>gi|40850963|gb|AAH65334.1| Hnrpa0l protein, partial [Danio rerio]
Length = 299
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L+ D++ E L F+Q G +E ++VI ++T + GFGFV + A+K V M
Sbjct: 95 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVM 154
Query: 88 FNRYETGCSH 97
++ + C H
Sbjct: 155 --KFHSICGH 162
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KLFVG L E L F Q G + V+ + RS FGFVT S++EEA+ +
Sbjct: 3 CKLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSIEEADAAM 61
>gi|68473894|ref|XP_719050.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|68474099|ref|XP_718946.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440741|gb|EAL00044.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440849|gb|EAL00151.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
Length = 400
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D PP D LF+GNL ++ + + L ++F + G V V + +T + GFG+V S+V
Sbjct: 263 DSQSPPSDT-LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSV 321
Query: 79 EEAEKVVEMFN 89
+EA+ +E N
Sbjct: 322 DEAKAALEAMN 332
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E A LFVG L +++D L F G V + VI R T +S G+G+V + AEK
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 85 VE 86
+E
Sbjct: 226 LE 227
>gi|402593573|gb|EJW87500.1| hypothetical protein WUBG_01586, partial [Wuchereria bancrofti]
Length = 166
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PP+ KLF+G L ++ E+L ++Q G V VI +T S GFGFVT +T++ AE
Sbjct: 94 PPQPRKLFIGGLSHETTDEQLRQYYSQWGTVVDCIVIRDPQTKYSRGFGFVTFATIQMAE 153
>gi|189219581|ref|YP_001940222.1| RNA-binding protein, RRM domain [Methylacidiphilum infernorum V4]
gi|189186439|gb|ACD83624.1| RNA-binding protein, RRM domain [Methylacidiphilum infernorum V4]
Length = 117
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGNL Y++ L +F + G ++ E++ R+++R+ GFGFV M+ ++ A K +
Sbjct: 32 KLYVGNLPYNLTDSDLFEIFAKIGPIKNVEIVRDRKSNRTKGFGFVEMADLDSARKAATV 91
Query: 88 FN 89
N
Sbjct: 92 LN 93
>gi|326490373|dbj|BAJ84850.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+K+FVG + Y D + L F+ G V ++VI RE+ RS GFGFVT ++ EEA +
Sbjct: 31 SKVFVGGISYGTDDQSLGDAFSNYGQVTEAKVIMDRESGRSRGFGFVTFTSSEEAGAAI 89
>gi|121705230|ref|XP_001270878.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
gi|119399024|gb|EAW09452.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
Length = 133
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L + + L F Q G VE + V+ R+T+RS GFGFV S+ +A+K ++
Sbjct: 2 SKLFIGGLAWHTTDDALRQGFEQFGQVEEAIVVKDRDTNRSRGFGFVRFSSDSDADKAMD 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 AMNNQE 67
>gi|25147051|ref|NP_741783.1| Protein H28G03.1, isoform a [Caenorhabditis elegans]
gi|351064182|emb|CCD72471.1| Protein H28G03.1, isoform a [Caenorhabditis elegans]
Length = 336
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
+ + PP+ KLF+G L +D E+L + F+Q G V + VI T S GFGFVT +
Sbjct: 60 QYQHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFA 119
Query: 77 TVEEAEKVV 85
++ AE +
Sbjct: 120 SIFSAESAM 128
>gi|302756609|ref|XP_002961728.1| hypothetical protein SELMODRAFT_140819 [Selaginella
moellendorffii]
gi|300170387|gb|EFJ36988.1| hypothetical protein SELMODRAFT_140819 [Selaginella
moellendorffii]
Length = 130
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L + VD L F G V + VI RET RS GFGFVT EA+ V+
Sbjct: 10 SKLFIGGLAWGVDDGTLRTAFANYGEVTEARVIMDRETGRSRGFGFVTFENDNEAKAAVQ 69
Query: 87 MFNRYETG 94
+ +E G
Sbjct: 70 GMDGHELG 77
>gi|417411155|gb|JAA52027.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 491
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 218 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 277
Query: 88 FNRYE 92
N +E
Sbjct: 278 LNGFE 282
>gi|291566709|dbj|BAI88981.1| RNA-binding protein [Arthrospira platensis NIES-39]
Length = 93
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
++VGNL YDV + L+ F + G V+ S + RET RS GFGFV MS+ E+ EKV
Sbjct: 3 IYVGNLSYDVTPDDLSAAFAEYGTVKRSMIPTDRETGRSRGFGFVEMSS-EDEEKVA 58
>gi|388582392|gb|EIM22697.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 326
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 23 PPEDA----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
PP++A +LFVGNL + V + L LF QAG V +++ + + +S G G V+ S+
Sbjct: 118 PPQNAAPGTQLFVGNLPFQVGWQDLKDLFRQAGHVVRADIQLFPD-GKSKGNGIVSFSSR 176
Query: 79 EEAEKVVEMFNRYE 92
E+A +E++N YE
Sbjct: 177 EDANNAIELYNGYE 190
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++ NL + +E L LF G V+ +E++ T RS G G V + A +E
Sbjct: 236 QIVSKNLPWSTSNEDLVELFETTGDVKKAEILIDSRTQRSRGVGIVEFFSTAAASVAIEK 295
Query: 88 FNRYETG 94
FN Y G
Sbjct: 296 FNGYVYG 302
>gi|112180524|gb|AAH50513.2| Hnrpa0l protein [Danio rerio]
Length = 302
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L+ D++ E L F+Q G +E ++VI ++T + GFGFV + A+K V M
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVM 157
Query: 88 FNRYETGCSH 97
++ + C H
Sbjct: 158 --KFHSICGH 165
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KLFVG L E L F Q G + V+ + RS FGFVT S+ EEA+ +
Sbjct: 6 CKLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAM 64
>gi|376316225|emb|CCF99622.1| RNA recognition motif-containing protein [uncultured
Flavobacteriia bacterium]
Length = 83
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+FVGNL + VD L F G V+ + VI RET RS GFGFV M EEA+ ++
Sbjct: 3 IFVGNLAWGVDDVVLREAFEAFGAVDSARVITDRETGRSRGFGFVEMPNQEEAQAALD 60
>gi|264680851|ref|YP_003280761.1| RNA-binding protein RNP-2 [Comamonas testosteroni CNB-2]
gi|262211367|gb|ACY35465.1| RNA-binding protein RNP-2 [Comamonas testosteroni CNB-2]
Length = 128
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y + L F++ G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDQDLQDSFSEFGTVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|212546539|ref|XP_002153423.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
gi|210064943|gb|EEA19038.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
Length = 135
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLF+G L + + L F + G +E + VI R+T+RS GFGFV ST EA+ +E
Sbjct: 2 AKLFIGGLAWHTTDDTLRSGFEKFGTIEEAIVIKDRDTNRSRGFGFVRFSTDAEADAAIE 61
Query: 87 MFN 89
N
Sbjct: 62 GMN 64
>gi|374316448|ref|YP_005062876.1| RRM domain-containing RNA-binding protein [Sphaerochaeta
pleomorpha str. Grapes]
gi|359352092|gb|AEV29866.1| RRM domain-containing RNA-binding protein [Sphaerochaeta
pleomorpha str. Grapes]
Length = 92
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGN+ Y+ E+L LF+Q G V + +I RET R GFGFV M A+ +
Sbjct: 4 KIYVGNMSYNTSEEELRDLFSQYGTVLSASIIIDRETRRPKGFGFVEMEEDSAADAAISQ 63
Query: 88 FNRYETG 94
+ + G
Sbjct: 64 LDGKDLG 70
>gi|410913984|ref|XP_003970468.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Takifugu rubripes]
Length = 319
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 14 DGSEVDYSEPPEDA-KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGF 72
DG ++D S+ EDA K+FVG L +D + L FN+ G V + + T RS GFGF
Sbjct: 50 DGGQIDASKDEEDAGKMFVGGLSWDTSKKDLKDYFNKFGEVTDCTIKMDQGTGRSRGFGF 109
Query: 73 VTMSTVEEAEKVVEM 87
+ EKV+E
Sbjct: 110 ILFKDPASVEKVLEQ 124
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+V NL + + + + LF Q G V E+I ++ RS G+ FVTM++ EEA+ V+
Sbjct: 74 KLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSKD-GRSKGYAFVTMASGEEAQAAVDK 132
Query: 88 FNRYE 92
F+ YE
Sbjct: 133 FDSYE 137
>gi|321479154|gb|EFX90110.1| hypothetical protein DAPPUDRAFT_299933 [Daphnia pulex]
Length = 381
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ YDV EKL +F++AG V ++++ RET + G+GF E A +
Sbjct: 16 VFVGNIPYDVTEEKLKDIFSEAGPVVSFKIVYDRETGKPKGYGFCEYRDQETALCAMRNL 75
Query: 89 NRYE 92
N YE
Sbjct: 76 NGYE 79
>gi|25147054|ref|NP_741785.1| Protein H28G03.1, isoform b [Caenorhabditis elegans]
gi|351064183|emb|CCD72472.1| Protein H28G03.1, isoform b [Caenorhabditis elegans]
Length = 315
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMS 76
+ + PP+ KLF+G L +D E+L + F+Q G V + VI T S GFGFVT +
Sbjct: 39 QYQHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFA 98
Query: 77 TVEEAEKVV 85
++ AE +
Sbjct: 99 SIFSAESAM 107
>gi|402220502|gb|EJU00573.1| hypothetical protein DACRYDRAFT_53825 [Dacryopinax sp. DJM-731 SS1]
Length = 382
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
KLF+G L V SE + F+Q G V S V+ RE+ RS GFGFVT + AEK+V
Sbjct: 83 KLFIGGLAPSVTSESMRDFFSQFGAVIDSTVMVDRESGRSKGFGFVTFEDGQGAEKLV 140
>gi|448520030|ref|XP_003868205.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis Co 90-125]
gi|380352544|emb|CCG22770.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis]
Length = 498
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D PP D LF+GNL ++ + +KL +F + G V + + +T + GFG+V S+V
Sbjct: 350 DQQSPPSDT-LFIGNLSFNANRDKLFEVFGEYGNVISCRLPTHPDTQQPKGFGYVQFSSV 408
Query: 79 EEAEKVVEMFN 89
+EA+ +E N
Sbjct: 409 DEAKAALEALN 419
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E A +F G L +++D + L F V + VI R T +S G+G+V S+ AE
Sbjct: 253 EPATIFAGRLSWNIDDDWLKREFEHLEGVISARVIMERATGKSRGYGYVDFSSKSAAENA 312
Query: 85 V 85
+
Sbjct: 313 I 313
>gi|359457481|ref|ZP_09246044.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
Length = 137
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFN-QAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+L++GNL ++D ++LA LF + G + ++V+ R+T + GFGFVT+ T E+A++V+
Sbjct: 4 RLYIGNLPKELDRDELAALFTAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQVIA 63
Query: 87 MFN 89
N
Sbjct: 64 KLN 66
>gi|374290274|ref|YP_005037327.1| putative RNA-binding protein [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
gi|358377066|gb|AEU09254.1| putative RNA-binding protein [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
Length = 89
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET--DRSTGFGFVTMSTVEEAEKV 84
KL+VGNL YD+ ++L F G V +++IF T RS GFGF+ MS E A++
Sbjct: 4 TKLYVGNLSYDMTEQELKEYFESIGEVINAKIIFDESTSNKRSKGFGFIEMSNEENAKQA 63
Query: 85 VEMFN 89
+E N
Sbjct: 64 IEKLN 68
>gi|363543257|ref|NP_001241843.1| uncharacterized protein LOC100857047 [Zea mays]
gi|238007748|gb|ACR34909.1| unknown [Zea mays]
gi|413916459|gb|AFW56391.1| putative glycine-rich protein [Zea mays]
Length = 261
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+KLFVG L Y D L F + G V +++I RE+ RS GFGF+T ++ EEA +
Sbjct: 31 SKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEASAAI 89
>gi|28557621|gb|AAO45216.1| RE27227p [Drosophila melanogaster]
Length = 437
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|17137710|ref|NP_477453.1| cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|5713194|gb|AAD47839.1|AF170082_1 cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|23171661|gb|AAF55577.2| cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|205360993|gb|ACI03573.1| FI01908p [Drosophila melanogaster]
Length = 419
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|284022113|sp|Q925G0.2|RBM3_RAT RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
Length = 155
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A V
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDV 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>gi|195569859|ref|XP_002102926.1| GD19237 [Drosophila simulans]
gi|194198853|gb|EDX12429.1| GD19237 [Drosophila simulans]
Length = 419
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|195497709|ref|XP_002096214.1| GE25546 [Drosophila yakuba]
gi|194182315|gb|EDW95926.1| GE25546 [Drosophila yakuba]
Length = 414
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|195452858|ref|XP_002073531.1| GK14167 [Drosophila willistoni]
gi|194169616|gb|EDW84517.1| GK14167 [Drosophila willistoni]
Length = 401
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 19 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 78
Query: 89 NRYETG 94
N YE G
Sbjct: 79 NGYEIG 84
>gi|195395200|ref|XP_002056224.1| GJ10336 [Drosophila virilis]
gi|194142933|gb|EDW59336.1| GJ10336 [Drosophila virilis]
Length = 427
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|195343246|ref|XP_002038209.1| GM17877 [Drosophila sechellia]
gi|194133059|gb|EDW54627.1| GM17877 [Drosophila sechellia]
Length = 419
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|195145742|ref|XP_002013849.1| GL24357 [Drosophila persimilis]
gi|194102792|gb|EDW24835.1| GL24357 [Drosophila persimilis]
Length = 418
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|195108753|ref|XP_001998957.1| GI23336 [Drosophila mojavensis]
gi|193915551|gb|EDW14418.1| GI23336 [Drosophila mojavensis]
Length = 428
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|195037535|ref|XP_001990216.1| GH18352 [Drosophila grimshawi]
gi|193894412|gb|EDV93278.1| GH18352 [Drosophila grimshawi]
Length = 430
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|194900156|ref|XP_001979623.1| GG22991 [Drosophila erecta]
gi|190651326|gb|EDV48581.1| GG22991 [Drosophila erecta]
Length = 416
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|194743216|ref|XP_001954096.1| GF16912 [Drosophila ananassae]
gi|190627133|gb|EDV42657.1| GF16912 [Drosophila ananassae]
Length = 415
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|125774537|ref|XP_001358527.1| GA20525 [Drosophila pseudoobscura pseudoobscura]
gi|54638266|gb|EAL27668.1| GA20525 [Drosophila pseudoobscura pseudoobscura]
Length = 418
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RE+ + GFGF E A +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 89 NRYETG 94
N YE G
Sbjct: 78 NGYEIG 83
>gi|431894348|gb|ELK04148.1| RNA-binding protein 39 [Pteropus alecto]
Length = 601
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 328 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 387
Query: 88 FNRYE 92
N +E
Sbjct: 388 LNGFE 392
>gi|307719265|ref|YP_003874797.1| RNA-binding region RNP-1 [Spirochaeta thermophila DSM 6192]
gi|386347364|ref|YP_006045613.1| RNP-1 like RNA-binding protein [Spirochaeta thermophila DSM 6578]
gi|306532990|gb|ADN02524.1| RNA-binding region RNP-1 [Spirochaeta thermophila DSM 6192]
gi|339412331|gb|AEJ61896.1| RNP-1 like RNA-binding protein [Spirochaeta thermophila DSM 6578]
Length = 101
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++ GNL Y + L LF Q G VE ++I R++ S GFGFV M++ E E +
Sbjct: 4 KIYAGNLNYQTTEDTLRQLFEQYGEVESVKIITDRDSGFSKGFGFVEMASEEAGEAAISA 63
Query: 88 FNRYE 92
N++E
Sbjct: 64 LNQHE 68
>gi|383767221|ref|YP_005446202.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
gi|381387489|dbj|BAM04305.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
Length = 112
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL + +E L LF+ G V + V+ RET RS GFGFVTM E+A+K ++
Sbjct: 2 KMYVGNLAWRTTTEDLEALFSNYGSVSDAIVLTDRETGRSRGFGFVTMGD-EDAKKAIDA 60
Query: 88 FN 89
+
Sbjct: 61 LD 62
>gi|388506424|gb|AFK41278.1| unknown [Lotus japonicus]
Length = 199
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 40 SEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETG 94
S +L +F +AG V EV++ R TDRS GF FVTM +V++A++ + MF+ + G
Sbjct: 3 SSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVG 57
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++ GNL + V S+ L +F Q G+V ++VI+ R++ RS GFGFVT T ++ E ++
Sbjct: 94 KIYAGNLGWRVSSQDLKDVFAEQPGLVS-AKVIYERDSGRSRGFGFVTFETAQDVEAALK 152
Query: 87 MFNRYE 92
N E
Sbjct: 153 TMNGVE 158
>gi|296199709|ref|XP_002747282.1| PREDICTED: RNA-binding protein 39 isoform 5 [Callithrix jacchus]
Length = 504
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 225 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 284
Query: 88 FNRYE 92
N +E
Sbjct: 285 LNGFE 289
>gi|242082447|ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
gi|241942342|gb|EES15487.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
Length = 266
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 18 VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD-RSTGFGFVTMS 76
V S P E +FVGNL + V + L LF A V +EVIF+ T RS G+ FV+ S
Sbjct: 158 VVVSNPMEKYIVFVGNLTWRVRNRHLRELFASAPGVISAEVIFHTTTPRRSAGYAFVSFS 217
Query: 77 TVEEAEKVVEMFN 89
+ E AE + FN
Sbjct: 218 SKETAEAAISAFN 230
>gi|221480563|gb|EEE19030.1| hypothetical protein TGGT1_105690 [Toxoplasma gondii GT1]
gi|221505534|gb|EEE31179.1| RNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 430
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 14 DGSEVDYSEPPED---AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
DG EP ++ KLFVG L ++ L F Q G V SEV+F + T RS GF
Sbjct: 107 DGQRSPPQEPDKELQMRKLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGF 166
Query: 71 GFVTMSTVEEAEKVVEM 87
GF+T +T + +V +M
Sbjct: 167 GFITFTTPDPVARVADM 183
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LFVG + DV+ E L F G ++ + V+ R+ +R GFGFV ++AEK +
Sbjct: 217 RLFVGGISDDVNDESLRAYFRHYGEIQSANVMVDRQNNRPRGFGFVIFRNPDDAEKAIGS 276
Query: 88 FNRYETGC 95
+ C
Sbjct: 277 HKKLGVHC 284
>gi|237838585|ref|XP_002368590.1| heterogeneous nuclear ribonucleoprotein A3, putative [Toxoplasma
gondii ME49]
gi|211966254|gb|EEB01450.1| heterogeneous nuclear ribonucleoprotein A3, putative [Toxoplasma
gondii ME49]
Length = 430
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 14 DGSEVDYSEPPED---AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
DG EP ++ KLFVG L ++ L F Q G V SEV+F + T RS GF
Sbjct: 107 DGQRSPPQEPDKELQMRKLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGF 166
Query: 71 GFVTMSTVEEAEKVVEM 87
GF+T +T + +V +M
Sbjct: 167 GFITFTTPDPVARVADM 183
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LFVG + DV+ E L F G ++ + V+ R+ +R GFGFV ++AEK +
Sbjct: 217 RLFVGGISDDVNDESLRAYFRHYGEIQSANVMVDRQNNRPRGFGFVIFRNPDDAEKAIGS 276
Query: 88 FNRYETGC 95
+ C
Sbjct: 277 HKKLGVHC 284
>gi|260804435|ref|XP_002597093.1| hypothetical protein BRAFLDRAFT_215789 [Branchiostoma floridae]
gi|229282356|gb|EEN53105.1| hypothetical protein BRAFLDRAFT_215789 [Branchiostoma floridae]
Length = 113
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K+FVG L Y + L F G +E + VI R+T +S G+GFVTM+T E AEK +
Sbjct: 9 KIFVGGLPYHTTDDSLRSFFQTFGEIEEAVVITDRQTGKSRGYGFVTMATREAAEKACK 67
>gi|194386036|dbj|BAG59582.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 224 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 283
Query: 88 FNRYE 92
N +E
Sbjct: 284 LNGFE 288
>gi|260825257|ref|XP_002607583.1| hypothetical protein BRAFLDRAFT_71461 [Branchiostoma floridae]
gi|229292931|gb|EEN63593.1| hypothetical protein BRAFLDRAFT_71461 [Branchiostoma floridae]
Length = 183
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S E KLFVG L +D SE L F++ G + +VI RET RS GFGFVT + +
Sbjct: 2 SGEKEPGKLFVGGLSWDTTSEGLESTFSEYGEITDCKVITDRETGRSRGFGFVTFANDSD 61
Query: 81 AEKVVEMFNRYE 92
A + + E
Sbjct: 62 AANAKKCMDGTE 73
>gi|126291195|ref|XP_001371651.1| PREDICTED: RNA-binding protein 39 isoform 1 [Monodelphis domestica]
Length = 524
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>gi|393910199|gb|EJD75782.1| hypothetical protein LOAG_17145 [Loa loa]
Length = 355
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PP+ KLF+G L ++ E+L ++Q G V VI +T S GFGFVT +T++ AE
Sbjct: 51 PPQPRKLFIGGLSHETTDEQLRQYYSQWGTVVDCIVIRDPQTKYSRGFGFVTFATIQMAE 110
Query: 83 KVVEMFNRYET 93
M +R T
Sbjct: 111 AA--MADRPHT 119
>gi|302679630|ref|XP_003029497.1| hypothetical protein SCHCODRAFT_85789 [Schizophyllum commune
H4-8]
gi|300103187|gb|EFI94594.1| hypothetical protein SCHCODRAFT_85789 [Schizophyllum commune
H4-8]
Length = 174
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K++VGNL ++ + L F+ G V S V+ RET RS GFGFVT S+ EAE +
Sbjct: 3 TKVYVGNLSWNTTDDTLRQAFSNFGQVLDSIVMRDRETGRSRGFGFVTFSSSGEAESAIS 62
Query: 87 MFNRYE 92
N E
Sbjct: 63 SLNEQE 68
>gi|184185564|gb|ACC68962.1| RNA binding motif protein 39 isoform a (predicted) [Rhinolophus
ferrumequinum]
Length = 498
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>gi|374384996|ref|ZP_09642507.1| hypothetical protein HMPREF9449_00893 [Odoribacter laneus YIT
12061]
gi|373227054|gb|EHP49375.1| hypothetical protein HMPREF9449_00893 [Odoribacter laneus YIT
12061]
Length = 100
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++V NL Y V+ L LF + G + ++VI RE+ RS GFGFV M + E +K ++
Sbjct: 3 IYVSNLSYAVNDSDLRDLFGEYGEISSAKVIMDRESGRSRGFGFVEMPSDTEGQKAIDEL 62
Query: 89 NRYE 92
N+ E
Sbjct: 63 NQVE 66
>gi|418528345|ref|ZP_13094295.1| RNA-binding protein RNP-2 [Comamonas testosteroni ATCC 11996]
gi|371454721|gb|EHN67723.1| RNA-binding protein RNP-2 [Comamonas testosteroni ATCC 11996]
Length = 130
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y + L F++ G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDQDLQDSFSEFGTVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|299531904|ref|ZP_07045304.1| RNA-binding protein RNP-2 [Comamonas testosteroni S44]
gi|298720079|gb|EFI61036.1| RNA-binding protein RNP-2 [Comamonas testosteroni S44]
Length = 128
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y + L F++ G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYSFRDQDLQDSFSEFGTVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|226532482|ref|NP_001150574.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195640298|gb|ACG39617.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 253
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+KLFVG L Y D L F + G V +++I RE+ RS GFGF+T ++ EEA +
Sbjct: 34 SKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEASAAI 92
>gi|327279532|ref|XP_003224510.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Anolis
carolinensis]
Length = 152
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L +D D + L F+ G + VI +ET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFDTDEQGLEQHFSSFGPISEVVVIKDKETQRSRGFGFITFANPEHASDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>gi|443921645|gb|ELU41222.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 726
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 23 PPEDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
P +D + LFVGNL Y V + L LF +AG V ++V + +RS G+G V ++T E+
Sbjct: 64 PGKDTRTQLFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPD-NRSRGYGTVLLATAED 122
Query: 81 AEKVVEMFNRY 91
A K +M+N Y
Sbjct: 123 AGKATDMYNGY 133
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+LF+GNL + + L LF AG + ++V + RS GFG V + +A + V M
Sbjct: 233 QLFIGNLPFQCQWQDLKDLFRAAGQILRADVALGPD-GRSRGFGTVVYAKESDAARAVTM 291
Query: 88 FNRYE 92
FN Y+
Sbjct: 292 FNGYD 296
>gi|74179655|dbj|BAE22477.1| unnamed protein product [Mus musculus]
Length = 521
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 307
Query: 88 FNRYE 92
N +E
Sbjct: 308 LNGFE 312
>gi|61557287|ref|NP_001013225.1| RNA-binding protein 39 [Rattus norvegicus]
gi|392346874|ref|XP_003749654.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Rattus
norvegicus]
gi|60552170|gb|AAH91394.1| RNA binding motif protein 39 [Rattus norvegicus]
gi|74196119|dbj|BAE32977.1| unnamed protein product [Mus musculus]
gi|149030834|gb|EDL85861.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Rattus
norvegicus]
Length = 524
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>gi|426241410|ref|XP_004014584.1| PREDICTED: RNA-binding protein 39 isoform 5 [Ovis aries]
Length = 530
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 257 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 316
Query: 88 FNRYE 92
N +E
Sbjct: 317 LNGFE 321
>gi|88682991|gb|AAI05542.1| RBM39 protein [Bos taurus]
Length = 528
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 255 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 314
Query: 88 FNRYE 92
N +E
Sbjct: 315 LNGFE 319
>gi|62857615|ref|NP_001016788.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|62201342|gb|AAH93451.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|89273890|emb|CAJ83908.1| RNA-binding region (RNP1, RRM) containing 2 [Xenopus (Silurana)
tropicalis]
Length = 542
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 252 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 311
Query: 88 FNRYE 92
N +E
Sbjct: 312 LNGFE 316
>gi|417411216|gb|JAA52053.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 499
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 220 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 279
Query: 88 FNRYE 92
N +E
Sbjct: 280 LNGFE 284
>gi|410080926|ref|XP_003958043.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
gi|372464630|emb|CCF58908.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
Length = 412
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E A +FVG L + +D E L + F G V + VI+ R TDRS G+G+V E AEK
Sbjct: 163 EPATIFVGRLSWSIDDEWLKNEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKEYAEKA 222
Query: 85 VE 86
V+
Sbjct: 223 VK 224
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
SEP E LF+GNL ++ D + ++ +F++ G + + + ET++ GFG+V + VE+
Sbjct: 261 SEPSE--TLFLGNLSFNADRDNISEMFSKFGEIVSVRIPTHPETEQPKGFGYVQYTNVED 318
Query: 81 AEKVVEMF 88
A+K ++
Sbjct: 319 AKKALDAL 326
>gi|330688445|ref|NP_001193433.1| RNA-binding protein 39 [Bos taurus]
Length = 530
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 257 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 316
Query: 88 FNRYE 92
N +E
Sbjct: 317 LNGFE 321
>gi|321260943|ref|XP_003195191.1| glycine-rich RNA binding protein [Cryptococcus gattii WM276]
gi|317461664|gb|ADV23404.1| Glycine-rich RNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 177
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K++VGNL ++ + L +F+ G V V+ RET RS GFGFVT + +EAE +
Sbjct: 4 SKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAIA 63
Query: 87 MFNRYE 92
N E
Sbjct: 64 AMNEQE 69
>gi|224077247|ref|XP_002192236.1| PREDICTED: RNA-binding protein 39 [Taeniopygia guttata]
Length = 522
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>gi|148674239|gb|EDL06186.1| RNA binding motif protein 39, isoform CRA_d [Mus musculus]
Length = 507
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 234 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 293
Query: 88 FNRYE 92
N +E
Sbjct: 294 LNGFE 298
>gi|118100450|ref|XP_425690.2| PREDICTED: RNA-binding protein 39 [Gallus gallus]
gi|363741409|ref|XP_003642487.1| PREDICTED: RNA-binding protein 39-like [Gallus gallus]
Length = 522
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>gi|299756715|ref|XP_002912240.1| hypothetical protein CC1G_13772 [Coprinopsis cinerea okayama7#130]
gi|298411800|gb|EFI28746.1| hypothetical protein CC1G_13772 [Coprinopsis cinerea okayama7#130]
Length = 241
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L V L + VDS L F + G V+ + V++ T S GFGFVTM T EEAE +
Sbjct: 87 LHVSGLSHRVDSRDLETAFAKIGRVQKASVMYDPHTRESRGFGFVTMETTEEAEAAISSL 146
Query: 89 N 89
N
Sbjct: 147 N 147
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+E E +FVG L ++VD++ LA F G V + V R + +S GF +V S+ E
Sbjct: 104 TEAGESNTVFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAE 163
Query: 81 AEKVVEMFN 89
A+K VE N
Sbjct: 164 AQKAVEEMN 172
>gi|327279534|ref|XP_003224511.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Anolis
carolinensis]
Length = 231
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L +D D + L F+ G + VI +ET RS GFGF+T + E A
Sbjct: 83 EEGKLFVGGLNFDTDEQGLEQHFSSFGPISEVVVIKDKETQRSRGFGFITFANPEHASDA 142
Query: 85 VEMFN 89
+ N
Sbjct: 143 MRAMN 147
>gi|390602556|gb|EIN11949.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 161
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ E L F+ G + S V+ R+T RS GFGFVT S+ EA+ +
Sbjct: 3 AKVYVGNLSWNTTDESLRAAFSHYGQILDSIVMRDRDTGRSRGFGFVTFSSSAEADNAIA 62
Query: 87 MFN 89
N
Sbjct: 63 SLN 65
>gi|294936221|ref|XP_002781664.1| Pre-mRNA-splicing factor SF2, putative [Perkinsus marinus ATCC
50983]
gi|239892586|gb|EER13459.1| Pre-mRNA-splicing factor SF2, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+D KLFVG L + + + F+Q G VE S V+F R T RS GFGFV S V + E
Sbjct: 24 DDRKLFVGGLPAPCEKQHMDGYFSQFGPVEHSVVMFDRNTGRSRGFGFVVYSQVTDMETC 83
Query: 85 V 85
+
Sbjct: 84 L 84
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K+FVG L D +L F++ G V + V++ RET R GFG+V S+ +AE +
Sbjct: 152 CKVFVGGLPNSCDQARLNDHFSRYGTVAEALVMYDRETGRHRGFGYVIYSSPADAEAAI 210
>gi|156363387|ref|XP_001626026.1| predicted protein [Nematostella vectensis]
gi|156212886|gb|EDO33926.1| predicted protein [Nematostella vectensis]
Length = 468
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
+P +L+VG+L +++ + +F G V+ ++I+ ET+RS G+GFV E A
Sbjct: 210 QPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAA 269
Query: 82 EKVVEMFNRYE 92
++ +E N +E
Sbjct: 270 KRAMEQMNGFE 280
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGN+ V +++L +F G VE +EV++ + T+RS FGFVTMST EEA VE
Sbjct: 70 KLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEA 129
Query: 88 FNRYETG 94
N E G
Sbjct: 130 LNGTEVG 136
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 18 VDYSEPPEDA-------KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
+D S P +A K++VGNL V +E L + F++ G + + V T +S G+
Sbjct: 152 IDRSAPEPEALFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGY 211
Query: 71 GFVTMSTVEEAEKVVEMFNRYE 92
GFVT S+ EE E V FN E
Sbjct: 212 GFVTFSSEEEVEAAVATFNNAE 233
>gi|291245052|ref|XP_002742405.1| PREDICTED: MGC81970 protein-like isoform 2 [Saccoglossus
kowalevskii]
Length = 444
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G ++ +++ ET RS G+GF+T E+A+K +E
Sbjct: 145 RLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDAKKALEQ 204
Query: 88 FNRYE 92
N +E
Sbjct: 205 LNGFE 209
>gi|67924769|ref|ZP_00518171.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|416405804|ref|ZP_11687965.1| RNA-binding region RNP-1 [Crocosphaera watsonii WH 0003]
gi|67853394|gb|EAM48751.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|357261220|gb|EHJ10516.1| RNA-binding region RNP-1 [Crocosphaera watsonii WH 0003]
Length = 94
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL YDV L +F + G V+ +++ RET R GFGFV M T E E +E
Sbjct: 3 IYVGNLSYDVTDADLEQVFAEYGTVKRVQLLTDRETGRPRGFGFVEMDTETEEESAIEAL 62
Query: 89 N 89
+
Sbjct: 63 D 63
>gi|47223170|emb|CAG11305.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G +E +++ ET RS G+GF++ + E A+K +E
Sbjct: 245 RLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 304
Query: 88 FNRYE 92
N +E
Sbjct: 305 LNGFE 309
>gi|392395169|ref|YP_006431771.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390526247|gb|AFM01978.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 116
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VGNL ++ SE L+ F Q G V S +I RET RS GFGFV + E+A ++ E
Sbjct: 35 ATLYVGNLPWNTTSEDLSSFFGQYGQVISSRIITDRETGRSRGFGFVEVED-EDATRMAE 93
Query: 87 MFN 89
N
Sbjct: 94 DLN 96
>gi|58269652|ref|XP_571982.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228218|gb|AAW44675.1| glycine-rich RNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 182
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K++VGNL ++ + L +F+ G V V+ RET RS GFGFVT + +EAE +
Sbjct: 4 SKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAIA 63
Query: 87 MFNRYE 92
N E
Sbjct: 64 AMNEQE 69
>gi|410899827|ref|XP_003963398.1| PREDICTED: RNA-binding protein 39-like [Takifugu rubripes]
Length = 500
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G +E +++ ET RS G+GF++ + E A+K +E
Sbjct: 230 RLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 289
Query: 88 FNRYE 92
N +E
Sbjct: 290 LNGFE 294
>gi|195577213|ref|XP_002078467.1| GD23448 [Drosophila simulans]
gi|194190476|gb|EDX04052.1| GD23448 [Drosophila simulans]
Length = 608
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 350 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 409
Query: 88 FNRYE 92
N +E
Sbjct: 410 LNGFE 414
>gi|358059148|dbj|GAA95087.1| hypothetical protein E5Q_01742 [Mixia osmundae IAM 14324]
Length = 395
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVEEAEKV 84
AK++VGNL + D E L F G ++ +VI +E T RS GFGFVT + +EAE
Sbjct: 3 AKVYVGNLAWGTDEEILRQAFGVHG--QVIDVIVMKEPQTGRSRGFGFVTFANPQEAEVA 60
Query: 85 VEMFNRYETGCSHGF 99
+ N + C+ F
Sbjct: 61 IANMNEQQLVCASFF 75
>gi|350015551|dbj|GAA42894.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Clonorchis
sinensis]
Length = 292
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 14 DGSEVDYSE--PPEDA---------KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR 62
DG EVD P E+ K+FVG L+ DV ++ LA F Q G V ++++ +
Sbjct: 79 DGKEVDSKRAMPREETSPEVHAAVKKIFVGGLKKDVTNDDLAEYFGQYGTVTDAQIVMAK 138
Query: 63 ETDRSTGFGFVTMSTVEEAEKVV 85
+T+ S GF FVT + +KV+
Sbjct: 139 DTNTSRGFAFVTFDDTDSVDKVI 161
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVEEAE 82
+D KLFVG L + E L ++Q G EI++V+ ++ +++S GFGFVT +
Sbjct: 11 QDKKLFVGGLNPKTNEESLRSYYSQWG--EITDVVVMKDPRSNKSRGFGFVTFKEAASVD 68
Query: 83 KV 84
K
Sbjct: 69 KA 70
>gi|407004871|gb|EKE21139.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 109
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++GNL Y++ + L F QAG V + VI +++ +S GF FV M T E A+K ++
Sbjct: 4 KLYIGNLLYEITEDDLKEYFGQAGSVASATVIRFQDG-KSKGFAFVEMETEEAAQKAIDT 62
Query: 88 FN 89
N
Sbjct: 63 LN 64
>gi|390474591|ref|XP_002757923.2| PREDICTED: putative heterogeneous nuclear ribonucleoprotein
A1-like 3-like isoform 3 [Callithrix jacchus]
Length = 339
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQPRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 EKVV 85
+ V
Sbjct: 69 DAAV 72
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + F FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>gi|255639378|gb|ACU19985.1| unknown [Glycine max]
Length = 142
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 24 PEDA--KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
P D+ ++ V NL + VD+ L LF + G V + I+ RE+ RS GFGFVT S+ +E
Sbjct: 54 PSDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARAIYDRESGRSRGFGFVTFSSPDEV 113
Query: 82 EKVVEMFN 89
++ N
Sbjct: 114 NSAIQSLN 121
>gi|223942615|gb|ACN25391.1| unknown [Zea mays]
Length = 120
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D L + F+ G V S++I RET RS GFGFVT ST E +E
Sbjct: 9 RCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEG 68
Query: 88 FN 89
N
Sbjct: 69 MN 70
>gi|452825397|gb|EME32394.1| RNA-binding protein [Galdieria sulphuraria]
Length = 152
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P+D +FVGNL +D E++ +F+ G V+ + F RE +R GF FV+M + A K
Sbjct: 7 PDDDCVFVGNLPFDCSEEEVYDVFSSCGNVKEVRMPFDREANRLKGFAFVSMESPMAARK 66
Query: 84 VVEM 87
+M
Sbjct: 67 ACDM 70
>gi|427719544|ref|YP_007067538.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427351980|gb|AFY34704.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 101
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y V E L +F++ G V+ ++ RET R GFGFV M T E K +E
Sbjct: 3 IYVGNLSYQVREEDLKQVFSEYGTVKTVQLPVDRETGRVRGFGFVEMETEAEETKAIEAL 62
Query: 89 NRYE 92
+ E
Sbjct: 63 DNAE 66
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
ED KL+VGNL +D + E + +F Q G V + R+T R GF FVTM +EAE
Sbjct: 126 EDVKLYVGNLSFDTNEEAVRSMFEQYGTVSDCFLPSDRDTGRPRGFAFVTMP-AKEAETA 184
Query: 85 VEMFNRYE 92
N E
Sbjct: 185 CNKVNGME 192
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++GNL Y D +L +F G V + R T R GFGFVT+ST + AE +
Sbjct: 20 KLYIGNLDYSTDEPQLRSVFGAFGAVTDVFLPMERGTSRPRGFGFVTLSTRQAAEDAIAK 79
Query: 88 FNRYE 92
++ +
Sbjct: 80 MDQSQ 84
>gi|390474589|ref|XP_002757922.2| PREDICTED: putative heterogeneous nuclear ribonucleoprotein
A1-like 3-like isoform 2 [Callithrix jacchus]
Length = 320
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 8 KEPEQPRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 81 AEKVV 85
+ V
Sbjct: 68 VDAAV 72
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + F FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>gi|321472566|gb|EFX83536.1| hypothetical protein DAPPUDRAFT_194972 [Daphnia pulex]
Length = 366
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P +L+VG+L +++ + L +F G +E +++ ET RS G+GF+T E+A+
Sbjct: 106 PNGPMRLYVGSLHFNITEDMLRSIFEPFGKIEHMQLMIDTETGRSKGYGFITFRNAEDAK 165
Query: 83 KVVEMFNRYE 92
K +E N +E
Sbjct: 166 KAMEQLNGFE 175
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFV NL + + LF Q G V E+I ++ RS GF FVTM+T EEA+ ++
Sbjct: 95 KLFVVNLPWSFSVVDIKDLFGQCGTVSDVEII-KQKNGRSRGFAFVTMTTGEEAQAAIDK 153
Query: 88 FNRYE 92
FN E
Sbjct: 154 FNSLE 158
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++ NL + V L F+ S V+F RS+G+GFV+ +T EEA +
Sbjct: 195 KLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISA 254
Query: 88 FN 89
F+
Sbjct: 255 FS 256
>gi|226533248|ref|NP_001149356.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195626620|gb|ACG35140.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414884785|tpg|DAA60799.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 251
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGN+ V +++L +F G VE +EV++ + T+RS FGFVTMST EEA VE
Sbjct: 70 KLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEA 129
Query: 88 FNRYETG 94
N E G
Sbjct: 130 LNGTEVG 136
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 18 VDYSEPPEDA-------KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
+D S P +A K++VGNL V +E L + F++ G + + V T +S G+
Sbjct: 152 IDRSAPEPEALFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGY 211
Query: 71 GFVTMSTVEEAEKVVEMFN 89
GFVT S+ EE E V FN
Sbjct: 212 GFVTFSSEEEVEAAVATFN 230
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFV NL + + LF Q G V E+I ++ RS GF FVTM+T EEA+ ++
Sbjct: 95 KLFVVNLPWSFSVVDIKDLFGQCGTVSDVEII-KQKNGRSRGFAFVTMTTGEEAQAAIDK 153
Query: 88 FNRYE 92
FN E
Sbjct: 154 FNSLE 158
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++ NL + V L F+ S V+F RS+G+GFV+ +T EEA +
Sbjct: 195 KLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISA 254
Query: 88 FN 89
F+
Sbjct: 255 FS 256
>gi|402574395|ref|YP_006623738.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
meridiei DSM 13257]
gi|402255592|gb|AFQ45867.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
meridiei DSM 13257]
Length = 83
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
L+VGNL ++ +E+L F++ G VE S +I RET RS GFGF+ + ++ A E+
Sbjct: 5 LYVGNLPWNTTAEELGQFFSEYGQVESSRIITDRETGRSRGFGFIEVEDMDAARMAEEL 63
>gi|296421441|ref|XP_002840273.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636488|emb|CAZ84464.1| unnamed protein product [Tuber melanosporum]
Length = 91
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLF+G L + D + L F + G VE + V+ R+T RS GFGFV S+ EEA ++
Sbjct: 2 AKLFIGGLAWHTDDDALRQKFQEFGNVEEAVVVKDRDTGRSRGFGFVRYSSDEEATAAMD 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 NMNDVE 67
>gi|119923161|ref|XP_001251082.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2
isoform 2 [Bos taurus]
gi|297471765|ref|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2 [Bos
taurus]
gi|296490543|tpg|DAA32656.1| TPA: heterogeneous nuclear ribonucleoprotein A1-like [Bos taurus]
Length = 320
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
EP + KLF+G LR++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 8 KEPEQLWKLFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEE 67
Query: 81 AEKVV 85
+ +
Sbjct: 68 VDAAM 72
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ + + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>gi|47212427|emb|CAF93583.1| unnamed protein product [Tetraodon nigroviridis]
Length = 500
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G +E +++ +T RS G+GF+T + E A+K +E
Sbjct: 232 RLYVGSLHFNITEEMLRGIFEPFGRIENIQLMVDSDTGRSKGYGFITFADAECAKKALEQ 291
Query: 88 FNRYE 92
N +E
Sbjct: 292 LNGFE 296
>gi|332249061|ref|XP_003273679.1| PREDICTED: RNA-binding protein 39 [Nomascus leucogenys]
Length = 432
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 159 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 218
Query: 88 FNRYE 92
N +E
Sbjct: 219 LNGFE 223
>gi|224035665|gb|ACN36908.1| unknown [Zea mays]
Length = 251
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+VGN+ V +++L +F G VE +EV++ + T+RS FGFVTMST EEA VE
Sbjct: 70 KLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEA 129
Query: 88 FNRYETG 94
N E G
Sbjct: 130 LNGTEVG 136
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 18 VDYSEPPEDA-------KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF 70
+D S P +A K++VGNL V +E L + F++ G + + V T +S G+
Sbjct: 152 IDRSAPEPEALFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGY 211
Query: 71 GFVTMSTVEEAEKVVEMFN 89
GFVT S+ EE E V FN
Sbjct: 212 GFVTFSSEEEVEAAVATFN 230
>gi|357627631|gb|EHJ77269.1| hypothetical protein KGM_03087 [Danaus plexippus]
Length = 425
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F++ G V +++F RET + G+GF E A +
Sbjct: 8 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 67
Query: 89 NRYETG 94
N YE G
Sbjct: 68 NGYEIG 73
>gi|58269650|ref|XP_571981.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134113905|ref|XP_774200.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256835|gb|EAL19553.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228217|gb|AAW44674.1| glycine-rich RNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 161
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K++VGNL ++ + L +F+ G V V+ RET RS GFGFVT + +EAE +
Sbjct: 4 SKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAIA 63
Query: 87 MFNRYE 92
N E
Sbjct: 64 AMNEQE 69
>gi|238011394|gb|ACR36732.1| unknown [Zea mays]
Length = 149
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D L + F+ G V S++I RET RS GFGFVT ST E +E
Sbjct: 9 RCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEG 68
Query: 88 FN 89
N
Sbjct: 69 MN 70
>gi|219888685|gb|ACL54717.1| unknown [Zea mays]
gi|414869098|tpg|DAA47655.1| TPA: glycine-rich protein1 [Zea mays]
Length = 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D L + F+ G V S++I RET RS GFGFVT ST E +E
Sbjct: 9 RCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEG 68
Query: 88 FN 89
N
Sbjct: 69 MN 70
>gi|195612516|gb|ACG28088.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|414869096|tpg|DAA47653.1| TPA: glycine-rich protein1 isoform 1 [Zea mays]
gi|414869097|tpg|DAA47654.1| TPA: glycine-rich protein1 isoform 2 [Zea mays]
Length = 155
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D L + F+ G V S++I RET RS GFGFVT ST E +E
Sbjct: 9 RCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEG 68
Query: 88 FN 89
N
Sbjct: 69 MN 70
>gi|195609654|gb|ACG26657.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612080|gb|ACG27870.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612572|gb|ACG28116.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D L + F+ G V S++I RET RS GFGFVT ST E +E
Sbjct: 9 RCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEG 68
Query: 88 FN 89
N
Sbjct: 69 MN 70
>gi|430745977|ref|YP_007205106.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430017697|gb|AGA29411.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 130
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++VGNL YD + L LF G V +VI + + RS GFGFV M +EA+ ++
Sbjct: 4 NIYVGNLPYDTTGDDLKQLFETYGAVSNGQVIIDKFSGRSRGFGFVEMDHDDEAQAAIDA 63
Query: 88 FN 89
N
Sbjct: 64 LN 65
>gi|302696971|ref|XP_003038164.1| hypothetical protein SCHCODRAFT_80466 [Schizophyllum commune H4-8]
gi|300111861|gb|EFJ03262.1| hypothetical protein SCHCODRAFT_80466 [Schizophyllum commune H4-8]
Length = 347
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR---ETDRSTGFGFVTMSTVEE 80
P LFV NL ++VD L+ LF +AG+ +S I R + +S G+GFV + + EE
Sbjct: 218 PSKTMLFVANLGFNVDDAGLSALFTEAGIKVVSARIVRRRWGKPRKSKGYGFVDVGSEEE 277
Query: 81 AEKVVEMFNRYETG 94
+K +E E G
Sbjct: 278 QKKAIETLQGKEVG 291
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 28 KLFVGNLRYDVDSEKLAHLFN--QAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K+FVGNL Y + E L F Q+ ++ + +VI + RS G+GFV T E A+K V
Sbjct: 30 KVFVGNLAYSITDEGLKTFFAPFQSDILSV-QVI--QRGSRSAGYGFVAFGTQETAQKAV 86
Query: 86 EMFNRYE 92
E N+ +
Sbjct: 87 EALNKKD 93
>gi|432865706|ref|XP_004070573.1| PREDICTED: RNA-binding protein 39-like [Oryzias latipes]
Length = 516
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G +E +++ ET RS G+GF++ + E A+K +E
Sbjct: 247 RLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 306
Query: 88 FNRYE 92
N +E
Sbjct: 307 LNGFE 311
>gi|157929888|gb|ABW04132.1| Hnrpa01 protein [Epinephelus coioides]
Length = 329
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+F+G L+ DV+ E L F+Q GV+E +EVI ++T + GFGFV + A+K V +
Sbjct: 103 KIFIGGLKDDVEDEHLHEYFSQYGVIEKAEVISDKQTGKKRGFGFVYFEDNDSADKAVVL 162
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 163 --KYHTINGH 170
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
KLFVG L ++ L F Q G + V+ ++ RS FGFVT ST
Sbjct: 11 CKLFVGGLNVQTTNDGLRQHFEQYGQLTDCVVVQNQQLQRSRCFGFVTYST 61
>gi|90265701|dbj|BAE91897.1| glycine-rich RNA-binding protein [Lolium perenne]
Length = 107
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
E+ + FVG L + + + L F+Q G + ++I RET RS GFGFVT S+ E +
Sbjct: 2 AEEYRCFVGGLAWATNDQSLEQAFSQFGEITDCKIINDRETGRSRGFGFVTFSSSESMKN 61
Query: 84 VVEMFN 89
+E N
Sbjct: 62 AIEGMN 67
>gi|209735756|gb|ACI68747.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 81
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLFVG L +D E LA F + G + +VI +ET RS GFGFV E+A+
Sbjct: 2 SDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKD 61
Query: 84 VVEMFN 89
+E N
Sbjct: 62 ALEGMN 67
>gi|443922321|gb|ELU41782.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 459
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVEEA 81
P LFV NL + VD +L +F AG+ +S + R RS GFGFV + EE
Sbjct: 219 PSKNMLFVANLAFSVDDARLKQIFTDAGINVVSARVVTRRWGARRSKGFGFVDVGNEEEQ 278
Query: 82 EKVVEMFNRYETG 94
+K + F E+G
Sbjct: 279 KKALAHFAPVESG 291
>gi|327279530|ref|XP_003224509.1| PREDICTED: cold-inducible RNA-binding protein-like [Anolis
carolinensis]
Length = 148
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLF+G L +D + + L LF+ G + V+ RET RS GFGF+T E+A+
Sbjct: 4 DEGKLFIGGLSFDTNEQNLEQLFSPYGDIAEVVVVKDRETQRSRGFGFITYCRPEDAKDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>gi|321460847|gb|EFX71885.1| hypothetical protein DAPPUDRAFT_93311 [Daphnia pulex]
Length = 81
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A +FVGN+ Y V ++L +F++AG V ++ RET RS GFGF + + A+ +
Sbjct: 2 ASVFVGNIPYGVSEDQLKAIFSEAGPVVSFRIVQDRETGRSRGFGFCEFQSPDSAQTAMR 61
Query: 87 MFNRYE 92
N YE
Sbjct: 62 NLNGYE 67
>gi|221069837|ref|ZP_03545942.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220714860|gb|EED70228.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 132
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y + L F++ G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYTFRDQDLQDSFSEFGTVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|242083506|ref|XP_002442178.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
gi|241942871|gb|EES16016.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
Length = 250
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+KLFVG L Y D L F + G V + +I RE+ RS GFGFVT ++ EEA +
Sbjct: 30 SKLFVGGLSYGTDDHSLRDEFAKYGEVIEARIILDRESGRSRGFGFVTYTSSEEASAAI 88
>gi|160901477|ref|YP_001567059.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333917515|ref|YP_004491247.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|160367061|gb|ABX38674.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333747715|gb|AEF92892.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 124
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+VGNL Y L F++ G V ++V+ R+T RS GFGFV M + EA+ ++
Sbjct: 4 KLYVGNLPYTFRDSDLEQAFSEFGAVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|313203177|ref|YP_004041834.1| rnp-1 like RNA-binding protein [Paludibacter propionicigenes WB4]
gi|312442493|gb|ADQ78849.1| RNP-1 like RNA-binding protein [Paludibacter propionicigenes WB4]
Length = 81
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y+V L + G V+ ++I RET RS GF FV MS E A+KV+
Sbjct: 3 IYVGNLSYNVRENDLQEAIAEYGQVDSCKLIMDRETRRSKGFAFVEMSDEEAAKKVIAEL 62
Query: 89 N 89
N
Sbjct: 63 N 63
>gi|315057077|ref|XP_003177913.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
gi|311339759|gb|EFQ98961.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
Length = 152
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
PP KLF+G L + + L F+Q G +E + V+ R+T+RS GFGFV S+ EA+
Sbjct: 3 PP---KLFIGGLAWHTTDDTLREGFSQFGTIEEAIVVKDRDTNRSRGFGFVRFSSEAEAD 59
Query: 83 KVVEMFNRYE 92
+ N E
Sbjct: 60 AALNAMNNQE 69
>gi|302818104|ref|XP_002990726.1| hypothetical protein SELMODRAFT_185536 [Selaginella moellendorffii]
gi|300141464|gb|EFJ08175.1| hypothetical protein SELMODRAFT_185536 [Selaginella moellendorffii]
Length = 738
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 7 GGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR 66
G EE+ D +E D +LFV NL Y E+L LF Q G V VI +ET+R
Sbjct: 211 GNEEAAQDVAETD------TGRLFVRNLAYTTSEEELVSLFGQYGEVVQVHVICDKETNR 264
Query: 67 STGFGFVTMSTVEEAEKVV 85
S G+G+V EEA + +
Sbjct: 265 SKGYGYVGFMLPEEATRAM 283
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+++ V NL V +KL F G V ++V+ RE +S FGFV + EEAE V
Sbjct: 5 SRVCVKNLPAYVTDDKLKEHFGAKGQVTDAKVMRTRE-GKSRRFGFVGFYSQEEAESAVA 63
Query: 87 MFNR 90
FNR
Sbjct: 64 YFNR 67
>gi|428313428|ref|YP_007124405.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428255040|gb|AFZ20999.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 93
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
++VGNL Y V SE L+ +F + G V+ ++ RET RS GFGFV M T E + ++
Sbjct: 3 IYVGNLSYQVTSEDLSSVFAEYGTVKRVQIPTDRETGRSRGFGFVEMETEAEEDAAIQ 60
>gi|348550387|ref|XP_003461013.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Cavia porcellus]
Length = 173
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
++ KLF+G L +D + + L +F++ G + V+ RET RS GFGFVT +++A+
Sbjct: 2 ASDEGKLFIGGLSFDTNEQSLEEVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 KVVEMFN 89
+ N
Sbjct: 62 DAMMAMN 68
>gi|59858555|ref|NP_001012304.1| RNA-binding protein 39 [Danio rerio]
gi|27882534|gb|AAH44487.1| RNA binding motif protein 39a [Danio rerio]
gi|182892014|gb|AAI65689.1| Rbm39a protein [Danio rerio]
Length = 523
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ +++ ET RS G+GF+T S E A+K +E
Sbjct: 247 RLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 306
Query: 88 FNRYE 92
N +E
Sbjct: 307 LNGFE 311
>gi|358378081|gb|EHK15764.1| hypothetical protein TRIVIDRAFT_38275 [Trichoderma virens Gv29-8]
Length = 300
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S PP +FVGN+ Y + E++ +F+ AG VE +++ ET R GFGF +
Sbjct: 3 SRPPSRV-VFVGNIPYGLSEEQITDIFSSAGKVERFRLVYDSETGRPKGFGFADYPDTDS 61
Query: 81 AEKVVEMFNRYE 92
A V N YE
Sbjct: 62 ASSAVRNLNEYE 73
>gi|25513662|pir||F89530 protein H28G03.1 [imported] - Caenorhabditis elegans
Length = 336
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+ PP+ KLF+G L +D E+L + F+Q G V + VI T S GFGFVT +++
Sbjct: 63 HDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIF 122
Query: 80 EAEKVV 85
AE +
Sbjct: 123 SAESAM 128
>gi|367015628|ref|XP_003682313.1| hypothetical protein TDEL_0F02910 [Torulaspora delbrueckii]
gi|359749975|emb|CCE93102.1| hypothetical protein TDEL_0F02910 [Torulaspora delbrueckii]
Length = 436
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E A +FVG L + +D E L + F+ G V + VI+ R TDRS G+G+V AEK
Sbjct: 185 EPATIFVGRLSWSIDDEWLKNEFDHIGGVVSARVIYERGTDRSRGYGYVDFEDKSYAEKA 244
Query: 85 VE 86
V+
Sbjct: 245 VK 246
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
SEP E LF+GNL ++ D + + +F++ G + + + ET++ GFG+V V++
Sbjct: 284 SEPSE--TLFLGNLSFNADRDNIYEMFSKFGEIVSVRIPTHPETEQPKGFGYVQYGNVDD 341
Query: 81 AEKVVEMF 88
A+K ++
Sbjct: 342 AKKALDAL 349
>gi|393246659|gb|EJD54168.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 531
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVG L ++VD E L F +AG V + V R+T +S GFG+V + A+K VE
Sbjct: 274 IFVGRLSWNVDDEWLKTEFAEAGEVVSARVQMDRQTGKSKGFGYVEFADAASAKKAVETM 333
Query: 89 NRYE 92
N E
Sbjct: 334 NGRE 337
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 10 ESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTG 69
++FGD SEP A LFVGNL + + + LF G V + R++ + G
Sbjct: 361 KAFGD----SRSEP--SATLFVGNLAFSATQDAVYELFGAVGEVVNVRLPTDRDSGQPKG 414
Query: 70 FGFVTMSTVEEAEKVV 85
FG+V + VE A K +
Sbjct: 415 FGYVEFADVETASKAL 430
>gi|225706362|gb|ACO09027.1| Cold-inducible RNA-binding protein [Osmerus mordax]
Length = 172
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLFVG L +D + + L +F++ G + VI RET RS GFGFVT +EA+
Sbjct: 2 SDEGKLFVGGLSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFDNPDEAKD 61
Query: 84 VVEMFN 89
+ N
Sbjct: 62 AMLAMN 67
>gi|209155104|gb|ACI33784.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|223648252|gb|ACN10884.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 167
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLFVG L +D + + L +F++ G + VI RET RS GFGFVT +EA+
Sbjct: 2 SDEGKLFVGGLSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFENPDEAKD 61
Query: 84 VVEMFN 89
+ N
Sbjct: 62 AMLAMN 67
>gi|116783558|gb|ABK22994.1| unknown [Picea sitchensis]
Length = 157
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K+FVG L Y VD + L F G V +++I RET RS GFGFVT ++ +EA VE
Sbjct: 39 SKVFVGGLSYGVDDQTLRESFATFGDVMEAKIINDRETGRSRGFGFVTFASPDEANAAVE 98
Query: 87 MFN 89
+
Sbjct: 99 AMD 101
>gi|335423511|ref|ZP_08552532.1| RNP-1 like RNA-binding protein [Salinisphaera shabanensis E1L3A]
gi|334891336|gb|EGM29584.1| RNP-1 like RNA-binding protein [Salinisphaera shabanensis E1L3A]
Length = 90
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++VGNL ++ + ++L F G V ++VI RET RS GFGFV M +A++ +E
Sbjct: 2 NIYVGNLSWNTNDDELRGAFEAFGEVSSAKVIMDRETGRSRGFGFVEMPDDNDAKQAIEG 61
Query: 88 FNRYETG 94
N + G
Sbjct: 62 MNNKDLG 68
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E A LFVG L + VD E L + F G V + VI R TDRS G+G+V + AEK
Sbjct: 147 EPATLFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKA 206
Query: 85 VE 86
++
Sbjct: 207 LK 208
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D P D LF+GNL +D D + L +F + G + + + ET++ GFG+V +
Sbjct: 243 DVPSEPSDT-LFLGNLSFDADRDNLYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTNT 301
Query: 79 EEAEKVVEMF 88
E+A+K ++
Sbjct: 302 EDAKKALDAL 311
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL+V NL + + + + LF Q+G V E+I ++ RS G+ FVTM++ EEA+ V+
Sbjct: 81 KLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSKD-GRSKGYAFVTMASGEEAQAAVDK 139
Query: 88 FNRYE 92
F+ YE
Sbjct: 140 FDSYE 144
>gi|226288243|gb|EEH43755.1| 28 kDa ribonucleoprotein [Paracoccidioides brasiliensis Pb18]
Length = 492
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP E LF+GNL ++VD E L F + G + ++ R+T RS GFG+V + E+A
Sbjct: 242 EPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDTGRSKGFGYVEFTNAEDA 301
Query: 82 EK 83
K
Sbjct: 302 VK 303
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 10 ESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTG 69
++FGD PE LF+GN+ + D ++ F + G + + E+ R G
Sbjct: 340 QNFGD------QRSPESDTLFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKG 393
Query: 70 FGFVTMSTVEEAEKVVEMFNRYE 92
FG+V S+++EA E N E
Sbjct: 394 FGYVQFSSIDEARSAFESLNGSE 416
>gi|194862772|ref|XP_001970115.1| GG10454 [Drosophila erecta]
gi|190661982|gb|EDV59174.1| GG10454 [Drosophila erecta]
Length = 593
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 335 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 394
Query: 88 FNRYE 92
N +E
Sbjct: 395 LNGFE 399
>gi|432876616|ref|XP_004073061.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like [Oryzias
latipes]
Length = 300
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 13 GDGSEVDYSEPPEDA----------KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR 62
G+ EV + EDA K+FVG L+ D++ + L F+Q G VE SEVI +
Sbjct: 73 GNAVEVKRAVAREDANRPEALAKVKKIFVGGLKDDIEEDHLTDYFSQYGEVEKSEVISEK 132
Query: 63 ETDRSTGFGFVTMSTVEEAEKVV 85
ET + GFGFV + + A+K V
Sbjct: 133 ETGKKRGFGFVYFTDHDSADKAV 155
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
KLFVG L D D + L F Q G + V+ ++ RS FGFVT ST EEA+
Sbjct: 6 CKLFVGGLNVDTDDDGLRKHFEQFGTLTDCVVVVNKQLQRSRCFGFVTYSTPEEAD 61
>gi|406988412|gb|EKE08420.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 123
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KL+VGNL +D +++ LF G V+ ++I R + RS GF FV M+T +EA K
Sbjct: 4 QNQKLYVGNLNFDASEDQVRELFGSYGEVQEVKIIMDRFSGRSRGFAFVRMATADEAGKA 63
>gi|365088445|ref|ZP_09327889.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363417101|gb|EHL24188.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 111
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+K++VGNL Y V L F++ G V ++V+ RET RS GFGFV M+ E A+ +
Sbjct: 3 SKIYVGNLPYSVTDASLQSNFSEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAI 61
>gi|406883357|gb|EKD30966.1| hypothetical protein ACD_77C00438G0003 [uncultured bacterium]
Length = 117
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+F+ NL + V L LF + G + ++VI RET +S GFGFV M T EA+K +E
Sbjct: 3 IFISNLSWAVRDADLRELFAEYGEISSAKVITDRETGKSRGFGFVEMPTEAEAKKAIEEL 62
Query: 89 NRYE 92
++ E
Sbjct: 63 DQAE 66
>gi|299742555|ref|XP_001832567.2| hypothetical protein CC1G_03581 [Coprinopsis cinerea okayama7#130]
gi|298405237|gb|EAU89316.2| hypothetical protein CC1G_03581 [Coprinopsis cinerea okayama7#130]
Length = 266
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL V NL Y+V + L +F Q G + V++Y E+ RSTG VT T EA + +
Sbjct: 62 KLKVSNLHYEVTPKDLNAIFGQIGTLVREPVLWYDESGRSTGQAIVTFETAAEATRAMNQ 121
Query: 88 FN 89
FN
Sbjct: 122 FN 123
>gi|195434196|ref|XP_002065089.1| GK15272 [Drosophila willistoni]
gi|194161174|gb|EDW76075.1| GK15272 [Drosophila willistoni]
Length = 612
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 354 RLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 413
Query: 88 FNRYE 92
N +E
Sbjct: 414 LNGFE 418
>gi|260221864|emb|CBA30852.1| Putative RNA-binding protein rbpB [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 124
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K++VGNL Y V + L F++ G V ++V+ R+T RS GF FV MST A+ ++
Sbjct: 29 SKIYVGNLPYSVTDDSLQSNFSEFGEVTSAKVMMDRDTGRSKGFAFVEMSTPAFAQAAID 88
Query: 87 MFN 89
N
Sbjct: 89 GLN 91
>gi|242013287|ref|XP_002427343.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212511696|gb|EEB14605.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 371
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 22 EPPEDAK---LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
PP D K +FV NL DV +L LF G + +++ +ET +S GF FVTM
Sbjct: 281 RPPADGKGYVIFVFNLSPDVQEVQLWRLFGPFGAITEIKIVQDKETKKSKGFAFVTMPNY 340
Query: 79 EEAEKVVEMFN 89
EAE + N
Sbjct: 341 REAEAAIRTLN 351
>gi|19920866|ref|NP_609095.1| CG11266, isoform B [Drosophila melanogaster]
gi|24582412|ref|NP_723243.1| CG11266, isoform A [Drosophila melanogaster]
gi|7297213|gb|AAF52478.1| CG11266, isoform A [Drosophila melanogaster]
gi|15292031|gb|AAK93284.1| LD35730p [Drosophila melanogaster]
gi|22945834|gb|AAN10614.1| CG11266, isoform B [Drosophila melanogaster]
gi|220946034|gb|ACL85560.1| CG11266-PA [synthetic construct]
gi|220955788|gb|ACL90437.1| CG11266-PA [synthetic construct]
Length = 594
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395
Query: 88 FNRYE 92
N +E
Sbjct: 396 LNGFE 400
>gi|348503003|ref|XP_003439056.1| PREDICTED: RNA-binding protein 39-like [Oreochromis niloticus]
Length = 498
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G +E +++ ET RS G+GF++ + E A+K +E
Sbjct: 228 RLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 287
Query: 88 FNRYE 92
N +E
Sbjct: 288 LNGFE 292
>gi|291245050|ref|XP_002742404.1| PREDICTED: MGC81970 protein-like isoform 1 [Saccoglossus
kowalevskii]
Length = 556
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G ++ +++ ET RS G+GF+T E+A+K +E
Sbjct: 257 RLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDAKKALEQ 316
Query: 88 FNRYE 92
N +E
Sbjct: 317 LNGFE 321
>gi|154494359|ref|ZP_02033679.1| hypothetical protein PARMER_03714 [Parabacteroides merdae ATCC
43184]
gi|423346931|ref|ZP_17324618.1| hypothetical protein HMPREF1060_02290 [Parabacteroides merdae
CL03T12C32]
gi|423725455|ref|ZP_17699592.1| hypothetical protein HMPREF1078_03481 [Parabacteroides merdae
CL09T00C40]
gi|154085803|gb|EDN84848.1| hypothetical protein PARMER_03714 [Parabacteroides merdae ATCC
43184]
gi|409218592|gb|EKN11560.1| hypothetical protein HMPREF1060_02290 [Parabacteroides merdae
CL03T12C32]
gi|409234579|gb|EKN27407.1| hypothetical protein HMPREF1078_03481 [Parabacteroides merdae
CL09T00C40]
Length = 80
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y V + L + + G VE ++I RET +S GFGFV M E A+K +
Sbjct: 3 IYVGNLNYRVREDDLKQVMEEYGTVESVKIIKDRETGKSKGFGFVEMPDDEAAKKAIAEL 62
Query: 89 NRYE 92
N E
Sbjct: 63 NEAE 66
>gi|218262316|ref|ZP_03476830.1| hypothetical protein PRABACTJOHN_02504 [Parabacteroides johnsonii
DSM 18315]
gi|423343074|ref|ZP_17320788.1| hypothetical protein HMPREF1077_02218 [Parabacteroides johnsonii
CL02T12C29]
gi|218223467|gb|EEC96117.1| hypothetical protein PRABACTJOHN_02504 [Parabacteroides johnsonii
DSM 18315]
gi|409216750|gb|EKN09733.1| hypothetical protein HMPREF1077_02218 [Parabacteroides johnsonii
CL02T12C29]
Length = 80
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y V + L + + G VE ++I RET +S GFGFV M E A+K +
Sbjct: 3 IYVGNLNYRVREDDLKQVMEEYGTVESVKIIKDRETGKSKGFGFVEMPDDEAAKKAIAEL 62
Query: 89 NRYE 92
N E
Sbjct: 63 NEAE 66
>gi|170098488|ref|XP_001880463.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644901|gb|EDR09150.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 154
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AK++VGNL ++ + L F++ G V S V+ R+T RS GFGFVT S+ +EA+ +
Sbjct: 3 AKVYVGNLSWNTTDDTLRQAFSEFGQVLDSIVMRDRDTGRSRGFGFVTFSSGQEADAAIG 62
Query: 87 MFNRYE 92
N E
Sbjct: 63 GLNEQE 68
>gi|156367085|ref|XP_001627250.1| predicted protein [Nematostella vectensis]
gi|156214154|gb|EDO35150.1| predicted protein [Nematostella vectensis]
Length = 259
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K ++GNL Y VD + L F+ VV++ +VI RET R GFGFVT + +E +K ++
Sbjct: 113 KCYIGNLSYSVDEQALEEKFHGYNVVDV-KVITDRETGRPRGFGFVTFGSEDEMDKAIDK 171
Query: 88 FN 89
F+
Sbjct: 172 FD 173
>gi|427740185|ref|YP_007059729.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
gi|427375226|gb|AFY59182.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
Length = 95
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL YDV E L+ +F + G V+ ++ RET RS GFGFV M + +E ++
Sbjct: 3 IYVGNLSYDVTQEDLSKVFAEYGSVKRVQLPTDRETGRSRGFGFVEMQSEDEESSAIQAL 62
Query: 89 N 89
+
Sbjct: 63 D 63
>gi|426370462|ref|XP_004052183.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein
A1-like 3-like [Gorilla gorilla gorilla]
Length = 326
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G LR++ E L Q G + V+ T+RS GFGFVT +TVEE
Sbjct: 9 EPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMSDPNTNRSRGFGFVTCATVEEV 68
Query: 82 EKVV 85
+ +
Sbjct: 69 DAAM 72
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 8 GEESFGDGSEVDYSEPPEDAK-LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR 66
G+ G + + D K LFVG L ++VD + L F + G V + VI R T+R
Sbjct: 381 GDTEDGSAKKAKTDDASGDIKNLFVGGLSWNVDDDWLKKEFEKFGEVISARVITERGTER 440
Query: 67 STGFGFVTMSTVEEAEKVVE 86
S GFG+V ++ E+A K VE
Sbjct: 441 SKGFGYVDFASPEDARKAVE 460
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 6 IGGEESFGDGSEVDYS-----EPPEDAK-------------LFVGNLRYDVDSEKLAHLF 47
+ G E G VD+S PP++ + LF+GNL + + + F
Sbjct: 462 MAGTEIDGRTINVDFSAPKPERPPQEKRSFGQEELSAPTTTLFIGNLPFSATQDSVYEAF 521
Query: 48 NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++ G + + ET+R GFG+V +T E A V +
Sbjct: 522 SEYGDINSVRLPTDPETERIKGFGYVEFATQEAATAAVNV 561
>gi|443708578|gb|ELU03655.1| hypothetical protein CAPTEDRAFT_219142 [Capitella teleta]
Length = 774
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S+ E LFV NL ++ + E + LF++ G V + +ET +S G GFV S+ E+
Sbjct: 369 SDTEEGRTLFVRNLSFESEEEDMYELFSELGDVVYCRITMNKETGKSRGTGFVQYSSKED 428
Query: 81 AEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIA 115
A+K +E+ N + G + G M DE +L ++A
Sbjct: 429 ADKCLEVAN--DPGPNGGL----MLDERELKVSVA 457
>gi|47086935|ref|NP_998467.1| heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|44890703|gb|AAH66681.1| Zgc:77052 [Danio rerio]
Length = 309
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 3 GGFIGGEESFGDGSEVDYSEPPEDA-KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61
GG GE G+G ++D S+ EDA K+FVG L +D + L F++ G V +
Sbjct: 20 GGEAAGENGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMD 79
Query: 62 RETDRSTGFGFVTMSTVEEAEKVVEM 87
T RS GFGF+ + ++V++
Sbjct: 80 SNTGRSRGFGFILFKESDSVDRVLQQ 105
>gi|339626955|ref|YP_004718598.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus TPY]
gi|379008663|ref|YP_005258114.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus DSM
10332]
gi|339284744|gb|AEJ38855.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus TPY]
gi|361054925|gb|AEW06442.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus DSM
10332]
Length = 85
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L+VGNL + E+LA F Q V + +I RET RS GFGFV ++ ++AE+ VE
Sbjct: 5 LYVGNLAWSTTEEELAQAFAQHAQVISARIITDRETGRSRGFGFVEVAD-QDAEQAVEAM 63
Query: 89 NRYETG 94
N + G
Sbjct: 64 NGTQLG 69
>gi|195471585|ref|XP_002088083.1| GE14328 [Drosophila yakuba]
gi|194174184|gb|EDW87795.1| GE14328 [Drosophila yakuba]
Length = 590
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 332 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 391
Query: 88 FNRYE 92
N +E
Sbjct: 392 LNGFE 396
>gi|57335957|emb|CAH25380.1| putative glycine-rich RNA-binding protein [Guillardia theta]
Length = 152
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K FV L + + SE L LF + G ++ + V++ RET RS GFGFVT + + E +
Sbjct: 62 KCFVSGLPWALTSEDLRDLFAEFGAIQDANVVYDRETGRSRGFGFVTFAESADCEAAITA 121
Query: 88 FNRYETG 94
++ G
Sbjct: 122 MDKANIG 128
>gi|195338839|ref|XP_002036031.1| GM16278 [Drosophila sechellia]
gi|194129911|gb|EDW51954.1| GM16278 [Drosophila sechellia]
Length = 596
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 338 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 397
Query: 88 FNRYE 92
N +E
Sbjct: 398 LNGFE 402
>gi|219670337|ref|YP_002460772.1| RNP-1 like RNA-binding protein [Desulfitobacterium hafniense
DCB-2]
gi|219540597|gb|ACL22336.1| RNP-1 like RNA-binding protein [Desulfitobacterium hafniense
DCB-2]
Length = 83
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VGNL ++ SE L F Q G V S +I RET RS GFGFV + E+A ++ E
Sbjct: 2 ATLYVGNLPWNTTSEDLNSFFGQYGQVISSRIITDRETGRSRGFGFVEVED-EDAARMAE 60
Query: 87 MFN 89
N
Sbjct: 61 DLN 63
>gi|17553656|ref|NP_499734.1| Protein CPF-2 [Caenorhabditis elegans]
gi|3877650|emb|CAB05746.1| Protein CPF-2 [Caenorhabditis elegans]
Length = 336
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 7 GGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR 66
GG +S G G+ D S+ +FVGN+ YDV + + +F++AG V +++ RET +
Sbjct: 4 GGYKSSGVGN--DRSQ----RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGK 57
Query: 67 STGFGFVTMSTVEEAEKVVEMFNRYE 92
G+GF+ ++ AE + N YE
Sbjct: 58 PKGYGFIEFPDIQTAEVAIRNLNGYE 83
>gi|20257683|gb|AAM16007.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 5 FIGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET 64
F+G E S+V+Y + FVG L + D L + F+ G V S++I RET
Sbjct: 3 FVGEREKMA-ASDVEY-------RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRET 54
Query: 65 DRSTGFGFVTMSTVEEAEKVVEMFN 89
RS GFGFVT ST + +E N
Sbjct: 55 QRSRGFGFVTFSTEDAMRSAIEGMN 79
>gi|428176294|gb|EKX45179.1| hypothetical protein GUITHDRAFT_152759 [Guillardia theta CCMP2712]
Length = 150
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K FV L + + SE L LF + G ++ + V++ RET RS GFGFVT + + E +
Sbjct: 60 KCFVSGLPWALTSEDLRDLFAEFGAIQDANVVYDRETGRSRGFGFVTFAESADCEAAITA 119
Query: 88 FNRYETG 94
++ G
Sbjct: 120 MDKANIG 126
>gi|428169231|gb|EKX38167.1| hypothetical protein GUITHDRAFT_115714 [Guillardia theta
CCMP2712]
Length = 214
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 15 GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74
GSE EP +D LFVGNL + VDS L LF + G + ++V + + DRS G+G V
Sbjct: 3 GSE---QEPDDDKVLFVGNLPWVVDSYGLQKLFEKFGPIFNAQVSYDDKNDRSRGYGHVV 59
Query: 75 MSTVEEAEKVVEMFNRYETG 94
E+A + N + G
Sbjct: 60 FRNAEDARTAILAMNDRDVG 79
>gi|358391586|gb|EHK40990.1| hypothetical protein TRIATDRAFT_249243 [Trichoderma atroviride
IMI 206040]
Length = 300
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P +FVGN+ Y + E++ +F+ AG VE +++ ET R GFGF + A
Sbjct: 5 PPSRVVFVGNIPYGLSEEQITDIFSSAGKVERFRLVYDSETGRPKGFGFADYPDTDSASS 64
Query: 84 VVEMFNRYE 92
V N YE
Sbjct: 65 AVRNLNEYE 73
>gi|219130588|ref|XP_002185444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403158|gb|EEC43113.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 291
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KLFVG L DV E+ F Q G + S V+F RET RS GFGFVT E + +++ M
Sbjct: 63 KLFVGGLPSDVTDEEFRTFFEQFGELIDSIVMFDRETHRSRGFGFVTFEDPEVSSRLLIM 122
Query: 88 FNRYETG 94
+ ETG
Sbjct: 123 GSEDETG 129
>gi|406946237|gb|EKD77506.1| glycine-rich RNA-binding protein [uncultured bacterium]
Length = 113
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K++VGNL Y+ ++L F+Q G +E ++I T RS GFGF+T +++++ E V
Sbjct: 4 SKIYVGNLSYNTTEDELRDYFSQFGNIEDIKLIIDFNTGRSKGFGFITYASIQDCESAVT 63
Query: 87 MFNRYETG 94
N + G
Sbjct: 64 TANGVDMG 71
>gi|255547195|ref|XP_002514655.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223546259|gb|EEF47761.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 267
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K+FVG + Y D L F + G V + VI RET RS GF FVT ++ EEA ++
Sbjct: 40 SKVFVGGISYQTDDTSLREAFGKYGEVIEARVIIDRETGRSRGFAFVTYTSSEEASSAIQ 99
Query: 87 MFN 89
+
Sbjct: 100 ALD 102
>gi|359460000|ref|ZP_09248563.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
Length = 95
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST-VEEAEKVVEM 87
++VGNL YDV E L+ F++ G V++ ++ RET + GFGFV MS+ EEA+ + E+
Sbjct: 3 IYVGNLSYDVTEENLSTAFSEYGTVKLVKLPTDRETGKMRGFGFVEMSSDAEEAKAIDEL 62
>gi|327263824|ref|XP_003216717.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like
[Anolis carolinensis]
Length = 354
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
EP + KLF+G L ++ E L + F Q G + V+ T RS GFGFVT STVEE
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRNHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEE 67
Query: 81 AE 82
+
Sbjct: 68 VD 69
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>gi|226472218|emb|CAX77145.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 307
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K+FVG L+ DV +E L+ F+Q G V ++++ ++T+ S GF FVT + +KV+
Sbjct: 105 KIFVGALKKDVTNEDLSDYFSQFGTVTDAQIVIAKDTNTSRGFAFVTFDDTDAVDKVI 162
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVT---MSTVE 79
+D KLF+G L D L + Q G EI +V+ ++ + +S GFGFVT S+V+
Sbjct: 12 QDKKLFIGGLSPKTDENSLKDYYGQWG--EIIDVVVMKDPRSQKSRGFGFVTYRDASSVD 69
Query: 80 EAE 82
A+
Sbjct: 70 AAQ 72
>gi|53713457|ref|YP_099449.1| RNA-binding protein [Bacteroides fragilis YCH46]
gi|60681704|ref|YP_211848.1| RNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|265763724|ref|ZP_06092292.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|336409821|ref|ZP_08590303.1| hypothetical protein HMPREF1018_02319 [Bacteroides sp. 2_1_56FAA]
gi|375358566|ref|YP_005111338.1| putative RNA-binding protein [Bacteroides fragilis 638R]
gi|383118431|ref|ZP_09939173.1| hypothetical protein BSHG_2420 [Bacteroides sp. 3_2_5]
gi|423250066|ref|ZP_17231082.1| hypothetical protein HMPREF1066_02092 [Bacteroides fragilis
CL03T00C08]
gi|423255566|ref|ZP_17236495.1| hypothetical protein HMPREF1067_03139 [Bacteroides fragilis
CL03T12C07]
gi|423257451|ref|ZP_17238374.1| hypothetical protein HMPREF1055_00651 [Bacteroides fragilis
CL07T00C01]
gi|423265582|ref|ZP_17244585.1| hypothetical protein HMPREF1056_02272 [Bacteroides fragilis
CL07T12C05]
gi|423271427|ref|ZP_17250397.1| hypothetical protein HMPREF1079_03479 [Bacteroides fragilis
CL05T00C42]
gi|423275668|ref|ZP_17254612.1| hypothetical protein HMPREF1080_03265 [Bacteroides fragilis
CL05T12C13]
gi|423285731|ref|ZP_17264612.1| hypothetical protein HMPREF1204_04150 [Bacteroides fragilis HMW
615]
gi|52216322|dbj|BAD48915.1| putative RNA-binding protein [Bacteroides fragilis YCH46]
gi|60493138|emb|CAH07919.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|251945724|gb|EES86131.1| hypothetical protein BSHG_2420 [Bacteroides sp. 3_2_5]
gi|263256332|gb|EEZ27678.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301163247|emb|CBW22797.1| putative RNA-binding protein [Bacteroides fragilis 638R]
gi|335946202|gb|EGN08008.1| hypothetical protein HMPREF1018_02319 [Bacteroides sp. 2_1_56FAA]
gi|387777819|gb|EIK39915.1| hypothetical protein HMPREF1055_00651 [Bacteroides fragilis
CL07T00C01]
gi|392651211|gb|EIY44876.1| hypothetical protein HMPREF1067_03139 [Bacteroides fragilis
CL03T12C07]
gi|392654128|gb|EIY47777.1| hypothetical protein HMPREF1066_02092 [Bacteroides fragilis
CL03T00C08]
gi|392697123|gb|EIY90309.1| hypothetical protein HMPREF1079_03479 [Bacteroides fragilis
CL05T00C42]
gi|392701335|gb|EIY94494.1| hypothetical protein HMPREF1080_03265 [Bacteroides fragilis
CL05T12C13]
gi|392703240|gb|EIY96384.1| hypothetical protein HMPREF1056_02272 [Bacteroides fragilis
CL07T12C05]
gi|404578782|gb|EKA83501.1| hypothetical protein HMPREF1204_04150 [Bacteroides fragilis HMW
615]
Length = 81
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL Y+V L + + GVVE ++I RET RS GF FV M EA ++
Sbjct: 3 MYVGNLSYNVKESDLRQVMEEYGVVESVKLITDRETRRSKGFAFVEMPESSEASNAIKEL 62
Query: 89 N 89
N
Sbjct: 63 N 63
>gi|389632187|ref|XP_003713746.1| hypothetical protein MGG_04816 [Magnaporthe oryzae 70-15]
gi|351646079|gb|EHA53939.1| hypothetical protein MGG_04816 [Magnaporthe oryzae 70-15]
Length = 236
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L + + L F + GVVE + V+ R+T RS GFGFV + ++A+K +
Sbjct: 57 SKLFIGGLAWHTEEGTLRQKFEEYGVVEEAVVVKDRDTGRSRGFGFVRYTNEDDAQKAIT 116
Query: 87 MFNRYE 92
N E
Sbjct: 117 AMNNVE 122
>gi|393215302|gb|EJD00793.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 589
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 13 GDGSEVDYSEPPEDAK-LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFG 71
GD + S+ ED+K +FVG L ++VD++ LA F G V + V R T +S GFG
Sbjct: 306 GDAAAQTSSDSQEDSKTVFVGRLSWNVDNDWLAQEFADCGEVVSARVQMDRNTGKSRGFG 365
Query: 72 FVTMSTVEEAEKVVEMFNRYE 92
FV +T E A V + + E
Sbjct: 366 FVEFATAEGANAAVALNGQKE 386
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 10 ESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTG 69
++FGD + S P + LFVGN+ +D+ + L +F + G V+ + R+T R G
Sbjct: 409 KAFGDST----SAP--SSVLFVGNVSFDMTEDGLWEVFAEYGEVKSVRLPTDRDTQRLKG 462
Query: 70 FGFVTMSTVEEAEKVVE 86
+G+V VE A+K E
Sbjct: 463 YGYVEFVDVESAKKAFE 479
>gi|423076693|ref|ZP_17065401.1| hypothetical protein HMPREF0322_04849 [Desulfitobacterium
hafniense DP7]
gi|361852256|gb|EHL04522.1| hypothetical protein HMPREF0322_04849 [Desulfitobacterium
hafniense DP7]
Length = 112
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VGNL ++ SE L F Q G V S +I RET RS GFGFV + E+A ++ E
Sbjct: 31 ATLYVGNLPWNTTSEDLNSFFGQYGQVISSRIITDRETGRSRGFGFVEVED-EDAARMAE 89
Query: 87 MFN 89
N
Sbjct: 90 DLN 92
>gi|326515712|dbj|BAK07102.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 104
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D + L + F++ G V S++I RET RS GFGFVT ++ E + +E
Sbjct: 7 RCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 88 FN 89
N
Sbjct: 67 MN 68
>gi|189237575|ref|XP_974855.2| PREDICTED: similar to splicing factor [Tribolium castaneum]
Length = 501
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+ E+A+K +E
Sbjct: 242 RLYVGSLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFRNCEDAKKALEQ 301
Query: 88 FNRYE 92
N +E
Sbjct: 302 LNGFE 306
>gi|71000080|ref|XP_754757.1| glycine-rich RNA-binding protein [Aspergillus fumigatus Af293]
gi|66852394|gb|EAL92719.1| glycine-rich RNA-binding protein, putative [Aspergillus fumigatus
Af293]
gi|159127765|gb|EDP52880.1| glycine-rich RNA-binding protein, putative [Aspergillus fumigatus
A1163]
Length = 118
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L + + L F GVVE + V+ R+T+RS GFGFV S+ EA+ ++
Sbjct: 2 SKLFIGGLAWHTTDDALRQGFEPYGVVEEAIVVKDRDTNRSRGFGFVRFSSDTEADAAMD 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 AMNNQE 67
>gi|148235865|ref|NP_001079794.1| cold-inducible RNA-binding protein B [Xenopus laevis]
gi|82247034|sp|Q9DED4.1|CIRBB_XENLA RecName: Full=Cold-inducible RNA-binding protein B; AltName:
Full=Cold-inducible RNA-binding protein 2;
Short=xCIRP2; AltName: Full=Glycine-rich RNA-binding
protein CIRP-B
gi|11761319|dbj|BAB19129.1| cold-inducible RNA binding protein 2 [Xenopus laevis]
gi|32450232|gb|AAH54250.1| Xcirp2 protein [Xenopus laevis]
Length = 166
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEA 81
++ KLF+G L +D + E L +F++ G +ISEV+ RET RS GFGFVT ++A
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYG--QISEVVVVKDRETKRSRGFGFVTFENPDDA 59
Query: 82 EKVVEMFN 89
+ + N
Sbjct: 60 KDAMMAMN 67
>gi|340520767|gb|EGR51003.1| predicted protein [Trichoderma reesei QM6a]
Length = 307
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
S PP +FVGN+ Y + E++ +F+ AG VE +++ ET R GFGF +
Sbjct: 3 SRPPSRV-VFVGNIPYGLSEEQITDIFSSAGKVERFRLVYDSETGRPKGFGFADYPDTDS 61
Query: 81 AEKVVEMFNRYE 92
A V N YE
Sbjct: 62 ASSAVRNLNEYE 73
>gi|332206587|ref|XP_003252377.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein
A1-like 3-like [Nomascus leucogenys]
Length = 321
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ +E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 10 EPKQLRKLFIGGLSFETTNESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 69
Query: 82 EKVV 85
+ +
Sbjct: 70 DAAM 73
Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ + + + GF F+T + +K++
Sbjct: 107 KIFVGGIKEDTEEHHLRGYFEQYGKIEVIEIMTDQGSGKKRGFAFLTFDDHDSVDKII-- 164
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 165 IQKYHTVNGH 174
>gi|226472204|emb|CAX77138.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 293
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K+FVG L+ DV +E L+ F+Q G V ++++ ++T+ S GF FVT + +KV+
Sbjct: 105 KIFVGALKKDVTNEDLSDYFSQFGTVTDAQIVIAKDTNTSRGFAFVTFDDTDAVDKVI 162
>gi|56758132|gb|AAW27206.1| SJCHGC06052 protein [Schistosoma japonicum]
gi|226472196|emb|CAX77134.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472198|emb|CAX77135.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472200|emb|CAX77136.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472202|emb|CAX77137.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472206|emb|CAX77139.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472208|emb|CAX77140.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472212|emb|CAX77142.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472214|emb|CAX77143.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472216|emb|CAX77144.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472220|emb|CAX77146.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472222|emb|CAX77147.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226473414|emb|CAX71392.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 293
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
K+FVG L+ DV +E L+ F+Q G V ++++ ++T+ S GF FVT + +KV+
Sbjct: 105 KIFVGALKKDVTNEDLSDYFSQFGTVTDAQIVIAKDTNTSRGFAFVTFDDTDAVDKVI 162
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVT---MSTVE 79
+D KLF+G L D L + Q G EI +V+ ++ + +S GFGFVT S+V+
Sbjct: 12 QDKKLFIGGLSPKTDENSLKDYYGQWG--EIIDVVVMKDPRSQKSRGFGFVTYRDASSVD 69
Query: 80 EAE 82
A+
Sbjct: 70 AAQ 72
>gi|162463657|ref|NP_001105707.1| glycine-rich protein1 [Zea mays]
gi|22293|emb|CAA43431.1| glycine-rich protein [Zea mays]
Length = 155
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D L + F+ G V S++I RET RS GFGFVT ST E +E
Sbjct: 9 RCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEERMRNRIEG 68
Query: 88 FN 89
N
Sbjct: 69 MN 70
>gi|441500694|ref|ZP_20982848.1| RNA-binding protein [Fulvivirga imtechensis AK7]
gi|441435535|gb|ELR68925.1| RNA-binding protein [Fulvivirga imtechensis AK7]
Length = 84
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV L Y SE+L F G V ++VIF RET RS GFGFV M + A + ++
Sbjct: 3 IFVAKLNYRTTSEELQRQFEAFGEVSSAKVIFDRETQRSKGFGFVEMPDDDAAREAIKAL 62
Query: 89 NRYE 92
N E
Sbjct: 63 NETE 66
>gi|403177298|ref|XP_003888795.1| hypothetical protein PGTG_22456 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172812|gb|EHS64731.1| hypothetical protein PGTG_22456 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 336
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 23 PP----EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
PP + ++FV NL + ++ L LF G V+ +EV+F E RS G G V TV
Sbjct: 241 PPLSIEPNQQIFVKNLPWSTSNDDLVELFQTTGKVQNAEVLF--EGGRSKGVGVVQFETV 298
Query: 79 EEAEKVVEMFNRYETG 94
+EAE + F Y G
Sbjct: 299 QEAETAIAKFQNYSYG 314
>gi|344292751|ref|XP_003418089.1| PREDICTED: putative RNA-binding protein 3-like [Loxodonta
africana]
Length = 154
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>gi|410954614|ref|XP_003983958.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein
A1-like 3-like [Felis catus]
Length = 301
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ +E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTNESLRSHFEQWGTITDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 EKVV 85
+ +
Sbjct: 69 DAAM 72
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
K+FVG ++ D + L F Q G +E+ E++ + + + GF FVT + +K+
Sbjct: 105 TKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDQGSGKKRGFPFVTFDDHDSVDKIA- 163
Query: 87 MFNRYETGCSH 97
+Y T H
Sbjct: 164 -IQKYHTVNGH 173
>gi|392412614|ref|YP_006449221.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390625750|gb|AFM26957.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 95
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K++VGNL +D L LF+ G VE ++VI + T+RS GFGF+ M+ EE K ++
Sbjct: 4 KIYVGNLSFDSSEADLKGLFSTYGEVESAKVIVDQFTNRSRGFGFIEMTNREEGLKAIQA 63
Query: 88 FN 89
+
Sbjct: 64 LD 65
>gi|349804063|gb|AEQ17504.1| putative cold-inducible rna-binding protein b [Hymenochirus
curtipes]
Length = 123
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
+D KLF+G L +D + + L +F + G +ISEV+ RET RS GFGFVT ++A+
Sbjct: 2 DDGKLFIGGLNFDTNEDGLEQVFGKYG--QISEVVVVKDRETKRSRGFGFVTFENPDDAK 59
Query: 83 KVVEMFN 89
+ N
Sbjct: 60 DAMMAMN 66
>gi|326487468|dbj|BAJ89718.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510625|dbj|BAJ87529.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518508|dbj|BAJ88283.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520529|dbj|BAK07523.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527353|dbj|BAK04618.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 161
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D + L + F++ G V S++I RET RS GFGFVT ++ E + +E
Sbjct: 7 RCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 88 FN 89
N
Sbjct: 67 MN 68
>gi|242018247|ref|XP_002429590.1| A-kinase anchor protein, putative [Pediculus humanus corporis]
gi|212514557|gb|EEB16852.1| A-kinase anchor protein, putative [Pediculus humanus corporis]
Length = 408
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ +D+ EKL +F++ G V ++++ RE + G+GF +E A +
Sbjct: 16 VFVGNIPFDLTEEKLKEIFSEVGPVLSFKLVYDRENGKPKGYGFCEYKDIETANSAMRNL 75
Query: 89 NRYETG 94
N +E G
Sbjct: 76 NGFEIG 81
>gi|195116809|ref|XP_002002944.1| GI10246 [Drosophila mojavensis]
gi|193913519|gb|EDW12386.1| GI10246 [Drosophila mojavensis]
Length = 617
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 359 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 418
Query: 88 FNRYE 92
N +E
Sbjct: 419 LNGFE 423
>gi|114145394|dbj|BAF30986.1| glycine-rich RNA-binding protein [Triticum aestivum]
Length = 163
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D + L + F++ G V S++I RET RS GFGFVT ++ E + +E
Sbjct: 7 RCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 88 FN 89
N
Sbjct: 67 MN 68
>gi|224081877|ref|XP_002306512.1| predicted protein [Populus trichocarpa]
gi|222855961|gb|EEE93508.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
P D KL+VGNL +++ +L LF G VE+ ++ ET + GFGFV + +E A+
Sbjct: 94 PVDRKLYVGNLHFNMTEMQLRQLFEPFGTVELVQLPLDLETGQCKGFGFVQFTQLENAKA 153
Query: 84 VVEMFN 89
N
Sbjct: 154 AQSALN 159
>gi|432955934|ref|XP_004085635.1| PREDICTED: deleted in azoospermia protein 1-like, partial [Oryzias
latipes]
Length = 502
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 37/131 (28%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT-------- 74
P + K+FVG L+ +++ L F++ G VE SE++ +ET + GFGFV
Sbjct: 258 PAKGEKIFVGGLKNNIEEYHLTDYFSRYGPVEKSEILLEKETGKKRGFGFVHFTHHKTAD 317
Query: 75 MSTVEE---------------AEKVVEMFNRYETGCSH--------------GFGFFTMS 105
++ VE+ A++ ++ NR ET H GFGF T S
Sbjct: 318 LALVEKYHTVNGHLVEIKKAVAKQEMQTANRTETTPRHRPGPGITENQNGYGGFGFVTYS 377
Query: 106 DESKLNDAIAA 116
+ N A+AA
Sbjct: 378 TPEETNAAMAA 388
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
P + K+FVG L+ +++ L + F++ G VE SE++ +ET + GFGFV + + A+
Sbjct: 415 PAKGEKIFVGGLKNNIEEFHLTNYFSRYGQVEKSEILLEKETGKKRGFGFVHFTHHKTAD 474
Query: 83 KVVEMFNRYETGCSH 97
+ + +Y T H
Sbjct: 475 --LALVEKYHTVNGH 487
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 37/126 (29%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT--------MSTVE 79
K+FVG L+ ++ L F++ G VE SE++ +ET + GFGFV ++ VE
Sbjct: 106 KIFVGGLKNNIKEYHLTDYFSRYGPVEKSEILLEKETGKKRGFGFVHFTHHKTADLALVE 165
Query: 80 E---------------AEKVVEMFNRYETGCSH--------------GFGFFTMSDESKL 110
+ A++ ++ NR ET H FGF T S +
Sbjct: 166 KYHTVNGHLVEVKKAVAKQEMQAGNRTETTPRHKPGPGMMENQNGYGSFGFVTYSTPEET 225
Query: 111 NDAIAA 116
N A+AA
Sbjct: 226 NAAMAA 231
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
KLF+G L + + + L F Q G + V+ + RS FGFVT ST EE
Sbjct: 15 KLFIGGLCVNTNDDGLRKHFEQFGTLTDFVVLQNKNAQRSRCFGFVTYSTPEE 67
>gi|332372985|gb|AEE61634.1| unknown [Dendroctonus ponderosae]
Length = 409
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F + G V +++F RET + G+GF E A +
Sbjct: 16 VFVGNIPYEATEEKLKDIFGEVGQVLSFKLVFDRETGKPKGYGFCEYRDQETALSAMRNL 75
Query: 89 NRYETG 94
N YE G
Sbjct: 76 NGYEIG 81
>gi|270000744|gb|EEZ97191.1| hypothetical protein TcasGA2_TC004378 [Tribolium castaneum]
Length = 409
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F + G V +++F RET + G+GF E A +
Sbjct: 16 VFVGNIPYEATEEKLKDIFGEVGQVLSFKLVFDRETGKPKGYGFCEYRDQETALSAMRNL 75
Query: 89 NRYETG 94
N YE G
Sbjct: 76 NGYEIG 81
>gi|194758325|ref|XP_001961412.1| GF14957 [Drosophila ananassae]
gi|190615109|gb|EDV30633.1| GF14957 [Drosophila ananassae]
Length = 594
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395
Query: 88 FNRYE 92
N +E
Sbjct: 396 LNGFE 400
>gi|91094479|ref|XP_970762.1| PREDICTED: similar to cleavage stimulation factor 64-kDa subunit
[Tribolium castaneum]
Length = 424
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVGN+ Y+ EKL +F + G V +++F RET + G+GF E A +
Sbjct: 16 VFVGNIPYEATEEKLKDIFGEVGQVLSFKLVFDRETGKPKGYGFCEYRDQETALSAMRNL 75
Query: 89 NRYETG 94
N YE G
Sbjct: 76 NGYEIG 81
>gi|170649643|gb|ACB21230.1| cold inducible RNA binding protein (predicted) [Callicebus
moloch]
Length = 166
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEAE 82
++ KLFVG L +D + + L +F++ G +ISEV+ RET S GFGF T+ +++A+
Sbjct: 4 DEGKLFVGALSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQGSRGFGFATLENIDDAK 61
Query: 83 KVVEMFNR 90
+ NR
Sbjct: 62 DAMMAMNR 69
>gi|381207415|ref|ZP_09914486.1| RNA-binding region RNP-1 (RNA recognition motif) [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 117
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ ++VGNL Y V E+L F Q G V+ +I R T RS GFGFV M EAE +
Sbjct: 26 NVNIYVGNLAYSVTEEQLRDAFGQFGEVDKVSIIMDRMTGRSKGFGFVEMQDDSEAEAAI 85
Query: 86 EMFN 89
N
Sbjct: 86 RGLN 89
>gi|387016398|gb|AFJ50318.1| HNRPA1 protein [Crotalus adamanteus]
Length = 212
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L + F Q G + V+ T RS GFGFVT STVEE
Sbjct: 22 EPEQLRKLFIGGLSFETTDESLRNHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEV 81
Query: 82 E 82
+
Sbjct: 82 D 82
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 119 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 176
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 177 IQKYHTVNGH 186
>gi|381206512|ref|ZP_09913583.1| RNA-binding protein [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 85
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
++VGNL + V ++L F+Q G V + VI R +RS GFGFV M E VE
Sbjct: 3 IYVGNLAFSVSEDQLRSAFSQFGKVSKASVIMDRVNNRSKGFGFVEMDDAAEGNSAVEAL 62
Query: 89 NRYE 92
N ++
Sbjct: 63 NGHQ 66
>gi|351712710|gb|EHB15629.1| Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3
[Heterocephalus glaber]
Length = 332
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L Q G + V+ T RS GFGFVT +TVEE
Sbjct: 45 EPEQLRKLFIGGLSFETTDETLKSHSEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEEV 104
Query: 82 E-------------KVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+ +V+E+ +G GF F T D ++ +
Sbjct: 105 DAARNARPRKYGKIEVIEIMTDRGSGKKGGFAFVTFDDHDSVDKIV 150
>gi|409991627|ref|ZP_11274872.1| RNP-1 like RNA-binding protein [Arthrospira platensis str.
Paraca]
gi|291567422|dbj|BAI89694.1| RNA-binding protein [Arthrospira platensis NIES-39]
gi|409937517|gb|EKN78936.1| RNP-1 like RNA-binding protein [Arthrospira platensis str.
Paraca]
Length = 181
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL ++D ++L +F + G ++VI R+T + GFGFVT+ + + A+++VE
Sbjct: 4 RLYVGNLPKELDRKELQAVFAEEGDTISAKVITDRKTGKCRGFGFVTVQSDDLADQIVEK 63
Query: 88 FN 89
+N
Sbjct: 64 YN 65
>gi|452989554|gb|EME89309.1| hypothetical protein MYCFIDRAFT_149907 [Pseudocercospora fijiensis
CIRAD86]
Length = 500
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
+P LF+GNL ++VD E L F + G ++ +I R++ RS GFG+V E+A
Sbjct: 240 DPNVTGNLFIGNLSWNVDEEWLTREFEEFGELKGVRIITDRDSGRSKGFGYVEFENAEDA 299
Query: 82 EKVVEMFNRYE 92
K +E N E
Sbjct: 300 AKALEAKNGAE 310
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
SEP + LFVGNL +D + + F + G + + RE+ GFG+V M +++E
Sbjct: 347 SEPSQ--TLFVGNLSFDATEDMVREYFEEHGSINGIRLPTDRESGAPKGFGYVEMGSIDE 404
Query: 81 AEKVVEMFNRYETG 94
A+ E + G
Sbjct: 405 AKAAYEALQGADLG 418
>gi|223974749|gb|ACN31562.1| unknown [Zea mays]
Length = 326
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 15 GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74
S+V+Y + FVG L + D L + F+ G V S++I RET RS GFGFVT
Sbjct: 3 ASDVEY-------RCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVT 55
Query: 75 MSTVEEAEKVVEMFN 89
ST E +E N
Sbjct: 56 FSTEEAMRNAIEGMN 70
>gi|270007747|gb|EFA04195.1| hypothetical protein TcasGA2_TC014444 [Tribolium castaneum]
Length = 522
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G ++ ++I ET RS G+GF+ E+A+K +E
Sbjct: 263 RLYVGSLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFRNCEDAKKALEQ 322
Query: 88 FNRYE 92
N +E
Sbjct: 323 LNGFE 327
>gi|426198381|gb|EKV48307.1| hypothetical protein AGABI2DRAFT_191934 [Agaricus bisporus var.
bisporus H97]
Length = 322
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE---TDRSTGFGFVTMSTVEE 80
P LFV NL +++D + L+ LF +AG+ +S I R +S G+GFV + + EE
Sbjct: 213 PSQTMLFVANLGFNIDDDGLSALFTEAGINVVSARIVRRRWGHPRKSKGYGFVDVGSEEE 272
Query: 81 AEKVVEMFNRYETG 94
+K +E+ E G
Sbjct: 273 QKKAIEVLEGKEVG 286
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+F GNL Y E L F+ + ++ V RS G+GFV +++ E A+K V+
Sbjct: 26 KVFAGNLAYSTTDEGLKAFFDPV-IGDVLSVQVIMRGQRSAGYGFVALTSEEAAQKAVDA 84
Query: 88 FNRYE 92
N+ E
Sbjct: 85 LNKKE 89
>gi|406929348|gb|EKD64949.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 106
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
LFVG L + + E L LF G V+ +I R T S GFGFV M E+A+K +E
Sbjct: 5 LFVGGLPFTIAGEALEQLFGSVGQVQSVNIIKDRYTGNSRGFGFVEMVNDEDAKKAIEKL 64
Query: 89 NRY 91
N Y
Sbjct: 65 NGY 67
>gi|260892116|ref|YP_003238213.1| RNP-1 like RNA-binding protein [Ammonifex degensii KC4]
gi|260864257|gb|ACX51363.1| RNP-1 like RNA-binding protein [Ammonifex degensii KC4]
Length = 87
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
L+VGNL + +E+LA +F+ G V S +I R+T RS GFGFV + E+AE ++
Sbjct: 5 LYVGNLPWSTQAEELAEIFSAYGEVLSSRIIVDRQTGRSRGFGFVEVRD-EDAEAMIRAL 63
Query: 89 NRYETG 94
N E G
Sbjct: 64 NGAEYG 69
>gi|242084350|ref|XP_002442600.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
gi|241943293|gb|EES16438.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
Length = 165
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D L F+ G V S++I RET RS GFGFVT ST E +E
Sbjct: 9 RCFVGGLAWATDDNSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEG 68
Query: 88 FN 89
N
Sbjct: 69 MN 70
>gi|256082940|ref|XP_002577709.1| splicing factor [Schistosoma mansoni]
gi|360043602|emb|CCD81148.1| putative splicing factor [Schistosoma mansoni]
Length = 463
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++G+L Y++ E L +F G +E ++I T+RS G+GFVT ++A+K ++
Sbjct: 204 KLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQ 263
Query: 88 FNRYE 92
N +E
Sbjct: 264 LNGFE 268
>gi|359475330|ref|XP_003631658.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Vitis
vinifera]
Length = 162
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D + L F+Q G + S++I RET RS GFGFVT S+ + +E
Sbjct: 9 RCFVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEG 68
Query: 88 FN 89
N
Sbjct: 69 MN 70
>gi|212275199|ref|NP_001130054.1| uncharacterized protein LOC100191146 [Zea mays]
gi|194688180|gb|ACF78174.1| unknown [Zea mays]
gi|414878270|tpg|DAA55401.1| TPA: glycine-rich RNA-binding protein 7 [Zea mays]
Length = 254
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG + Y D L F + G V + +I RE+ RS GFGFVT ++ EEA +
Sbjct: 30 SKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAIT 89
Query: 87 MFN 89
+
Sbjct: 90 ALD 92
>gi|297741463|emb|CBI32594.3| unnamed protein product [Vitis vinifera]
Length = 121
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG L + D + L F+Q G + S++I RET RS GFGFVT S+ + +E
Sbjct: 9 RCFVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEG 68
Query: 88 FN 89
N
Sbjct: 69 MN 70
>gi|156097965|ref|XP_001615015.1| eukaryotic translation initiation factor 3 subunit 4 [Plasmodium
vivax Sal-1]
gi|148803889|gb|EDL45288.1| eukaryotic translation initiation factor 3 subunit 4, putative
[Plasmodium vivax]
Length = 269
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 31 VGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90
V NL DV+ +L++LF + G + + ++ET S GF F+T S EEA++ +E NR
Sbjct: 192 VTNLSEDVNESELSNLFGRVGQISRMFLAKHKETQNSKGFAFITYSNREEAKRAIEKLNR 251
Query: 91 YETGCSHGFGFFTMS 105
HGF +S
Sbjct: 252 ------HGFENLLLS 260
>gi|32564506|ref|NP_871980.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
gi|373219014|emb|CCD65019.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
Length = 295
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FVG+L +VD++KL F G V ++VI T +S G+GFV+ EEAE+ +E
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 89 N 89
N
Sbjct: 84 N 84
>gi|409079856|gb|EKM80217.1| hypothetical protein AGABI1DRAFT_73193 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 322
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE---TDRSTGFGFVTMSTVEE 80
P LFV NL +++D + L+ LF +AG+ +S I R +S G+GFV + + EE
Sbjct: 213 PSQTMLFVANLGFNIDDDGLSALFTEAGINVVSARIVRRRWGHPRKSKGYGFVDVGSEEE 272
Query: 81 AEKVVEMFNRYETG 94
+K +E+ E G
Sbjct: 273 QKKAIEVLEGKEVG 286
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+F GNL Y E L F+ + ++ V RS G+GFV +++ E A+K V+
Sbjct: 26 KVFAGNLAYSTTDEGLKAFFDPV-IGDVLSVQVIMRGQRSAGYGFVALTSEEAAQKAVDA 84
Query: 88 FNRYE 92
N+ E
Sbjct: 85 LNKKE 89
>gi|359482021|ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|297740158|emb|CBI30340.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
+KLFVG L + + L+ F+Q G V ++++ R +DRS GFGFVT ++ EEA+K
Sbjct: 34 SKLFVGGLSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKA 91
>gi|195397963|ref|XP_002057597.1| GJ18017 [Drosophila virilis]
gi|194141251|gb|EDW57670.1| GJ18017 [Drosophila virilis]
Length = 599
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +++ ++I ET RS G+GF+T ++A+K +E
Sbjct: 341 RLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 400
Query: 88 FNRYE 92
N +E
Sbjct: 401 LNGFE 405
>gi|118788821|ref|XP_317010.3| AGAP008433-PA [Anopheles gambiae str. PEST]
gi|116122929|gb|EAA12873.4| AGAP008433-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 23 PPEDA----KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
PP++ +L+VG+L +++ + L +F G ++ ++I +T RS G+GF+T
Sbjct: 261 PPKNPSGPMRLYVGSLHFNITEDMLNGIFEPFGKIDNIQLIMDADTGRSKGYGFITFHNA 320
Query: 79 EEAEKVVEMFNRYE 92
++A+K +E N +E
Sbjct: 321 DDAKKALEQLNGFE 334
>gi|344266091|ref|XP_003405114.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like
isoform 1 [Loxodonta africana]
Length = 320
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT STVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEV 68
Query: 82 EKVV 85
+ +
Sbjct: 69 DAAM 72
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>gi|323649982|gb|ADX97077.1| hnrpa01 protein [Perca flavescens]
Length = 124
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 13 GDGSEVDYSEPPEDA----------KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR 62
G+ EV + EDA K+FVG L+ D++ E L+ F+Q G +E +EVI +
Sbjct: 16 GNSVEVKRAVAREDANKPEALAKVKKIFVGGLKDDIEEEHLSDYFSQYGQIEKAEVISEK 75
Query: 63 ETDRSTGFGFVTMSTVEEAEKVV 85
ET + GFGFV + + A+K V
Sbjct: 76 ETGKKRGFGFVYFTDHDAADKAV 98
>gi|302340482|ref|YP_003805688.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
gi|301637667|gb|ADK83094.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
Length = 93
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTM 75
K++VGNL Y+ E L LF+Q G V +I R+T+RS GFGFV M
Sbjct: 3 KKIYVGNLSYEAREEDLESLFSQYGSVSSVRIITDRDTNRSKGFGFVEM 51
>gi|195654321|gb|ACG46628.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|238010482|gb|ACR36276.1| unknown [Zea mays]
Length = 252
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG + Y D L F + G V + +I RE+ RS GFGFVT ++ EEA +
Sbjct: 30 SKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAIT 89
Query: 87 MFN 89
+
Sbjct: 90 ALD 92
>gi|351706626|gb|EHB09545.1| Heterogeneous nuclear ribonucleoprotein D-like protein
[Heterocephalus glaber]
Length = 257
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 10 ESFGDGSEVDYSEPPED-AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRST 68
E F GS+++ S+ +D K+F+G L +D + + L +Q G V + T S
Sbjct: 11 EEFAKGSKINASKNQQDDGKMFIGVLSWDTNKKDLMECLSQFGEVVDRTIKTDPVTGTSR 70
Query: 69 GFGFVTMSTVEEAEKVVEMFNRYETGCS--HGFGFFTMSDE 107
GFGFV +KV+E+ R T S GF F T +DE
Sbjct: 71 GFGFVLFKDAASVDKVLELKERKLTKTSERRGFCFITYTDE 111
>gi|410931844|ref|XP_003979305.1| PREDICTED: RNA-binding protein 39-like, partial [Takifugu rubripes]
Length = 324
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ E L +F G +E +++ +T RS G+GF+T + E A+K +E
Sbjct: 143 RLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDTDTGRSKGYGFITFADAECAKKALEQ 202
Query: 88 FNRYE-TGCSHGFGFFTMSDESKLNDAIAALDGQ 120
N +E G G T +S + A A LDG+
Sbjct: 203 LNGFELAGRPMKVGHVTERSDS--SGAPAFLDGE 234
>gi|113953042|ref|YP_730260.1| RNA-binding protein [Synechococcus sp. CC9311]
gi|113880393|gb|ABI45351.1| putative RNA-binding protein [Synechococcus sp. CC9311]
Length = 126
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+++GNL + + E L LF Q G V+ + + RET R GFGFV M+T E+ +K ++
Sbjct: 3 IYIGNLSFQAEQEDLLDLFGQYGEVKSASLPLDRETGRKRGFGFVEMATDEDEQKAID 60
>gi|426247087|ref|XP_004017318.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ +E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPKQLWKLFIGGLSFETTNESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 EKVV 85
+ +
Sbjct: 69 DAAM 72
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>gi|352093687|ref|ZP_08954858.1| RNP-1 like RNA-binding protein [Synechococcus sp. WH 8016]
gi|351680027|gb|EHA63159.1| RNP-1 like RNA-binding protein [Synechococcus sp. WH 8016]
Length = 118
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+++GNL + + E L LF Q G V+ + + RET R GFGFV M+T E+ +K ++
Sbjct: 3 IYIGNLSFQAEQEDLLDLFGQYGEVKSASLPLDRETGRKRGFGFVEMATDEDEQKAID 60
>gi|218193515|gb|EEC75942.1| hypothetical protein OsI_13038 [Oryza sativa Indica Group]
Length = 261
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ ++FVG L + D KLA F + G V ++++ R T R GFGFVT S E +
Sbjct: 5 EEGRIFVGGLSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSA 64
Query: 85 VE 86
++
Sbjct: 65 IK 66
>gi|13785947|gb|AAK39523.1| RNA-binding motif protein 3 [Rattus norvegicus]
Length = 127
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>gi|82593902|ref|XP_725199.1| eukaryotic translation initiation factor 3 p42 [Plasmodium yoelii
yoelii 17XNL]
gi|23480115|gb|EAA16764.1| eukaryotic translation initiation factor 3 p42 [Plasmodium yoelii
yoelii]
Length = 300
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 31 VGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90
V NL DV+ +L++LF + G + + ++ET S GF F+T S EEA++ +E NR
Sbjct: 223 VTNLSEDVNESELSNLFGRVGQISRMFLAKHKETQNSKGFAFITYSKREEAKRAIEKLNR 282
Query: 91 YETGCSHGFGFFTMS 105
HGF +S
Sbjct: 283 ------HGFENLLLS 291
>gi|414153680|ref|ZP_11410002.1| RNP-1 like RNA-binding protein [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
gi|411454701|emb|CCO07906.1| RNP-1 like RNA-binding protein [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
Length = 84
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
A L+VGNL + +E L F+Q G V S VI RET RS GFGFV ++ + EK+V
Sbjct: 2 ATLYVGNLPWATKAEDLQEAFSQYGEVFSSRVITDRETGRSRGFGFVEVNDA-DVEKMVA 60
Query: 87 MFNRYETG 94
N E G
Sbjct: 61 ALNGTELG 68
>gi|410446610|ref|ZP_11300713.1| hypothetical protein B273_0331 [SAR86 cluster bacterium SAR86E]
gi|409980282|gb|EKO37033.1| hypothetical protein B273_0331 [SAR86 cluster bacterium SAR86E]
Length = 79
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
++VGNL + +D L +F + G + ++VI R+T+RS GFGFV MS + E ++
Sbjct: 2 NIYVGNLPWSIDDASLEQIFAEHGTITSAKVITDRQTNRSRGFGFVEMS--DGGENAIQA 59
Query: 88 FNRYE 92
N E
Sbjct: 60 LNDAE 64
>gi|393245114|gb|EJD52625.1| hypothetical protein AURDEDRAFT_111257 [Auricularia delicata
TFB-10046 SS5]
Length = 103
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K++VGNL ++ E L F G + S V+ R+T RS GFGFVT + +EA+ ++
Sbjct: 3 SKVYVGNLSWNTTDETLRSAFQDFGQILDSIVMRDRDTGRSRGFGFVTFGSPQEADSAIQ 62
Query: 87 MFNRYE 92
N E
Sbjct: 63 ALNDQE 68
>gi|226469236|emb|CAX70097.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 463
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
KL++G+L Y++ E L +F G +E ++I T+RS G+GFVT ++A+K ++
Sbjct: 204 KLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQ 263
Query: 88 FNRYE 92
N +E
Sbjct: 264 LNGFE 268
>gi|20257675|gb|AAM16003.1| glycine-rich RNA binding protein [Zea mays]
Length = 156
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 5 FIGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET 64
F+G E S+V+Y + FVG L + D L + F+ G V S++I RET
Sbjct: 4 FVGEREEMA-ASDVEY-------RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRET 55
Query: 65 DRSTGFGFVTMSTVEEAEKVVEMFN 89
RS GFGFVT ST + +E N
Sbjct: 56 QRSRGFGFVTFSTEDAMRSAIEGMN 80
>gi|20257669|gb|AAM16000.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 5 FIGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET 64
F+G E S+V+Y + FVG L + D L + F+ G V S++I RET
Sbjct: 4 FVGEREEMA-ASDVEY-------RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRET 55
Query: 65 DRSTGFGFVTMSTVEEAEKVVEMFN 89
RS GFGFVT ST + +E N
Sbjct: 56 QRSRGFGFVTFSTEDAMRSAIEGMN 80
>gi|426241404|ref|XP_004014581.1| PREDICTED: RNA-binding protein 39 isoform 2 [Ovis aries]
Length = 524
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE-TGCSHGFGFFT 103
N +E TG G T
Sbjct: 311 LNGFELTGRPMKVGHVT 327
>gi|323650232|gb|ADX97202.1| cold-inducible RNA-binding protein [Perca flavescens]
Length = 80
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+ KLF+G L +D E LA F + G +E +VI R+T S GFGFV E+A+ +
Sbjct: 1 EGKLFIGGLSFDTTEESLAAAFGKFGTIEKVDVIKDRDTGYSRGFGFVKYENSEDAKDAM 60
Query: 86 EMFN 89
E N
Sbjct: 61 EGMN 64
>gi|297839301|ref|XP_002887532.1| hypothetical protein ARALYDRAFT_476560 [Arabidopsis lyrata subsp.
lyrata]
gi|297333373|gb|EFH63791.1| hypothetical protein ARALYDRAFT_476560 [Arabidopsis lyrata subsp.
lyrata]
Length = 292
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K+FVG + Y D L F++ G V +++I RET RS GF FVT ++ EEA ++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 87 M 87
+
Sbjct: 94 L 94
>gi|149921891|ref|ZP_01910335.1| RNA-binding protein [Plesiocystis pacifica SIR-1]
gi|149817244|gb|EDM76721.1| RNA-binding protein [Plesiocystis pacifica SIR-1]
Length = 189
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
+FVG L + +D+++L +F + G +E + VI RET RS GFGFVT E A K +
Sbjct: 1 MFVGGLPWAMDNQRLKEVFAEFGALEDARVILDRETGRSRGFGFVTYVDEEGATKAL 57
>gi|119492333|ref|XP_001263582.1| glycine-rich RNA-binding protein, putative [Neosartorya fischeri
NRRL 181]
gi|119411742|gb|EAW21685.1| glycine-rich RNA-binding protein, putative [Neosartorya fischeri
NRRL 181]
Length = 118
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G L + + L F GVVE + V+ R+T+RS GFGFV S+ EA+ ++
Sbjct: 2 SKLFIGGLAWHTTDDALRQGFEPYGVVEEAIVVKDRDTNRSRGFGFVRFSSDTEADAAMD 61
Query: 87 MFNRYE 92
N E
Sbjct: 62 AMNNQE 67
>gi|402868384|ref|XP_003898284.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein
A1-like 3-like [Papio anubis]
Length = 263
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G++ V+ T RS GFGFVT +TVEE
Sbjct: 9 EPKQLRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 EKVV 85
+ +
Sbjct: 69 DAAM 72
>gi|395330588|gb|EJF62971.1| RNA-binding domain-containing protein [Dichomitus squalens
LYAD-421 SS1]
Length = 351
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+F GNL Y E L F +S + R +RS G+GFV+ +T E A+K VE+
Sbjct: 30 KVFAGNLAYSTTDEGLKAFFAPVQSDVLSAQVIMRGGNRSAGYGFVSFTTAEAAQKAVEL 89
Query: 88 FNRYE 92
++ E
Sbjct: 90 LDKKE 94
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGV-VEISEVIFYR--ETDRSTGFGFVTMSTVEE 80
P LFV NL +++D L+ LF +AG+ V+ + ++ R + +S G+GFV + E+
Sbjct: 237 PSKTVLFVANLGFNIDDAGLSALFTEAGIEVKSARIVRRRWGKPRKSKGYGFVDVGDEEQ 296
Query: 81 AEKVVEMFNRYETG 94
+K +E E G
Sbjct: 297 QKKAIEALQGKEVG 310
>gi|302832365|ref|XP_002947747.1| glycine-rich RNA-binding protein-like protein [Volvox carteri f.
nagariensis]
gi|300267095|gb|EFJ51280.1| glycine-rich RNA-binding protein-like protein [Volvox carteri f.
nagariensis]
Length = 193
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTM 75
KL+VGNL +D ++ L LF++ G VE + V RET RS GFGFVT+
Sbjct: 47 KLYVGNLSWDTRADDLNGLFSKFGAVEDAFVATDRETGRSRGFGFVTL 94
>gi|115454617|ref|NP_001050909.1| Os03g0681900 [Oryza sativa Japonica Group]
gi|31712074|gb|AAP68379.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|108710427|gb|ABF98222.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113549380|dbj|BAF12823.1| Os03g0681900 [Oryza sativa Japonica Group]
gi|215692670|dbj|BAG88090.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692827|dbj|BAG88216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625569|gb|EEE59701.1| hypothetical protein OsJ_12125 [Oryza sativa Japonica Group]
Length = 308
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ ++FVG L + D KLA F + G V ++++ R T R GFGFVT S E +
Sbjct: 5 EEGRIFVGGLSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSA 64
Query: 85 VE 86
++
Sbjct: 65 IK 66
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,071,478,758
Number of Sequences: 23463169
Number of extensions: 77350768
Number of successful extensions: 240358
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9631
Number of HSP's successfully gapped in prelim test: 3203
Number of HSP's that attempted gapping in prelim test: 212923
Number of HSP's gapped (non-prelim): 29147
length of query: 128
length of database: 8,064,228,071
effective HSP length: 94
effective length of query: 34
effective length of database: 10,153,657,481
effective search space: 345224354354
effective search space used: 345224354354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)