BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040490
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 65/73 (89%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
+SEPPE+AKLFVGNL YDVDSEKLA +F+ AGVVEI+EVI+ RETDRS GFGFVTMSTVE
Sbjct: 48 FSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVE 107
Query: 80 EAEKVVEMFNRYE 92
EAEK VE+ N Y+
Sbjct: 108 EAEKAVELLNGYD 120
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 29/94 (30%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+++VGNL +DVD+ +L LF++ G V + V+ RET RS GFGFVTMS+
Sbjct: 149 CRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSS--------- 199
Query: 87 MFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
ES++NDAIAALDGQ
Sbjct: 200 --------------------ESEVNDAIAALDGQ 213
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/78 (71%), Positives = 66/78 (84%)
Query: 15 GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74
G +Y EP EDAKLFVGNL YD+DSE LA LF QAGVVEI+EVI+ RETDRS GFGFVT
Sbjct: 85 GETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVT 144
Query: 75 MSTVEEAEKVVEMFNRYE 92
MSTVEEA+K VE++++Y+
Sbjct: 145 MSTVEEADKAVELYSQYD 162
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 29/94 (30%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGN+ +D+D +L +F++ G V + V+F RE+ RS GFGFVTMS+
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSS---------- 241
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E+++++AIA LDGQ
Sbjct: 242 -------------------EAEMSEAIANLDGQT 256
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 6/91 (6%)
Query: 8 GEESFGDGSE------VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61
G+ES GD SE ++ EP E+AKLFVGNL YDV+S+ LA LF QAG VEI+EVI+
Sbjct: 125 GDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
Query: 62 RETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92
RETD+S GFGFVTMS+V+EAE VE FNRY+
Sbjct: 185 RETDQSRGFGFVTMSSVDEAETAVEKFNRYD 215
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 29/93 (31%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL +DVD+ +L LF++ G V + V++ RET RS GFGFVTMS V+E
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE------- 297
Query: 88 FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQ 120
LN+AI+ALDGQ
Sbjct: 298 ----------------------LNEAISALDGQ 308
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 59/66 (89%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
AKLFVGNL YDVDSE LA LF QAGVVEI+EVI+ R+TD+S GFGFVTMSTVEEAEK VE
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 87 MFNRYE 92
M+NRY+
Sbjct: 196 MYNRYD 201
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 33/104 (31%)
Query: 22 EPP----EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77
PP + +++VGN+ + +D +L LF++ G V + V++ RET RS GFGFVTM++
Sbjct: 221 RPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMAS 280
Query: 78 VEEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQA 121
E++++DAIA LDGQ+
Sbjct: 281 -----------------------------EAEMSDAIANLDGQS 295
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 17 EVDYSEPP---EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
+V+ +E P ED KLFVGNL + VDS LA LF +AG VE+ EVI+ + T RS GFGFV
Sbjct: 74 DVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFV 133
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMST EE E + FN YE
Sbjct: 134 TMSTKEEVEAAEQQFNGYE 152
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 3 GGFIGGEESFGD---GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVI 59
GG G SFG G VD S +++VGNL + VD L LF++ G V ++V+
Sbjct: 185 GGGRDGNSSFGGARGGRSVDSSN-----RVYVGNLSWGVDDLALKELFSEQGNVVDAKVV 239
Query: 60 FYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
+ R++ RS GFGFVT S+ +E ++ N
Sbjct: 240 YDRDSGRSRGFGFVTYSSSKEVNDAIDSLN 269
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 17 EVDYSEPP---EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
+V+ +E P ED KLFVGNL + VDS LA LF +AG VEI EVI+ + + RS GFGFV
Sbjct: 75 DVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFV 134
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMST EE E + FN YE
Sbjct: 135 TMSTKEEVEAAEQQFNGYE 153
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 3 GGFIGGEESFGD---GSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVI 59
GG G SFG G VD S +++VGNL + VD L LF++ G V ++V+
Sbjct: 186 GGGRDGNSSFGGARGGRSVDSSN-----RVYVGNLSWGVDDLALKELFSEQGNVVDAKVV 240
Query: 60 FYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89
+ R++ RS GFGFVT S+ +E ++ N
Sbjct: 241 YDRDSGRSRGFGFVTYSSAKEVNDAIDSLN 270
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFVTMS+V E E
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 86 EMFNRYE 92
+ FN YE
Sbjct: 150 QQFNGYE 156
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD L LF++ G V + VI+ R++ RS GFGFVT + +E + ++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 88 FN 89
+
Sbjct: 265 LD 266
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
DG E + + P D K+FVGNL + DS LA LF +AG VE+ EVI+ + T RS GFGFV
Sbjct: 75 DGVEEERNFSP-DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 133
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMS+ EE E + FN YE
Sbjct: 134 TMSSKEEVEAACQQFNGYE 152
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD + L LF++ G V ++V++ R++ RS GFGFVT S+ EE +E
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 88 FN 89
+
Sbjct: 249 LD 250
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 46/67 (68%)
Query: 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85
D K+FVGNL + DS LA LF +AG VE+ EVI+ + T RS GFGFVTMS+ EE E
Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145
Query: 86 EMFNRYE 92
+ FN YE
Sbjct: 146 QQFNGYE 152
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+++VGNL + VD + L LF++ G V ++V++ R++ RS GFGFVT S+ EE +E
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 88 FN 89
+
Sbjct: 255 LD 256
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%)
Query: 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFV 73
D + V+ + D KLFVGNL ++VDS +LA LF AG VE+ EVI+ + T RS GFGFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 74 TMSTVEEAEKVVEMFNRYE 92
TMST E E + FN YE
Sbjct: 146 TMSTAAEVEAAAQQFNGYE 164
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + VD L +LFN+ G V + VI+ R++ RS GFGFVT+S+ +E +K +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 88 FN 89
N
Sbjct: 318 LN 319
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 47/67 (70%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGNL + + S +L+ +F +AG V E+++ R TDRS GF FVTM +VEEA++ + +
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 88 FNRYETG 94
F+ + G
Sbjct: 175 FDGSQVG 181
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLF-NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
KL+V NL + + S+ L F +Q G + ++VI+ R + RS GFGF+T S+ E ++
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMS-AKVIYDRSSGRSRGFGFITFSSAEAMNSALD 276
Query: 87 MFNRYE 92
N E
Sbjct: 277 TMNEVE 282
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 46/67 (68%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VGN+ ++++++L + + G +EI+EV++ + + RS FGFVTM TVE+A V+E
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144
Query: 88 FNRYETG 94
N E G
Sbjct: 145 LNDTEIG 151
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+++GNL V +E L F++ G V ++V T +S GFGFV+ S+ EE E ++
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244
Query: 88 FN 89
N
Sbjct: 245 LN 246
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLF+G + Y +D + L F + G V + VI RET RS GFGFVT ++ E A ++
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 87 MFN 89
+
Sbjct: 100 ALD 102
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+ FVG LR+ D + L + F++ G V S++I RET RS GFGFVT ++ E + +E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 88 FN 89
N
Sbjct: 67 MN 68
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L +D D + L +F++ G ++ V+ RET RS GFGFVT E+A+
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MAGMN 68
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
SEP D +LFVGNL Y+V + L LF QAG V +++ +E RS G G V MS+++E
Sbjct: 175 SEP--DRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKE 231
Query: 81 AEKVVEMFN 89
A ++M +
Sbjct: 232 AMHAIQMLH 240
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVE 79
Y P ++VGNL + L LF G V I I Y T RS GFG V
Sbjct: 303 YPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSV-IRARIAYEPTGRSKGFGVVQFENEN 361
Query: 80 EAEKVVEMFNRYETG 94
+A +E N Y G
Sbjct: 362 DAASSIEKLNGYRYG 376
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEE 80
++ KLFVG L +D + + L +F++ G +ISEV+ RET RS GFGFVT +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 81 AEKVVEMFN 89
A+ + N
Sbjct: 60 AKDAMMAMN 68
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A V
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDV 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY--RETDRSTGFGFVTMSTVEEA 81
++ KLF+G L +D + E L +F++ G +ISEV+ RET RS GFGFVT ++A
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYG--QISEVVVVKDRETKRSRGFGFVTFENPDDA 59
Query: 82 EKVVEMFN 89
+ + N
Sbjct: 60 KDAMMAMN 67
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+K+FVG + Y D L F++ G V +++I RET RS GF FVT ++ EEA ++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 87 M 87
+
Sbjct: 94 L 94
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L + E + H F Q G V+ + ++F + T+R GFGFVT + + EKV E+
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 88 ----FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126
N C + ++ + G++R++P+
Sbjct: 170 HFHEINNKMVECKK-------AQPKEVMSPTGSARGRSRVMPY 205
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVEE 80
P + K+F+G L + E L F Q G E+ E + R+ T RS GFGFVT
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFG--EVKECLVMRDPLTKRSRGFGFVTFMDQAG 73
Query: 81 AEKVVEMFNRYE 92
+KV+ +R+E
Sbjct: 74 VDKVLAQ-SRHE 84
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG L + E + H F Q G V+ + ++F + T+R GFGFVT + + EKV E+
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 88 ----FNRYETGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126
N C + ++ + G++R++P+
Sbjct: 170 HFHEINNKMVECKK-------AQPKEVMSPTGSARGRSRVMPY 205
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE--TDRSTGFGFVTMSTVEE 80
P + K+F+G L + E L F Q G E+ E + R+ T RS GFGFVT
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFG--EVKECLVMRDPLTKRSRGFGFVTFMDQAG 73
Query: 81 AEKVVEMFNRYE 92
+KV+ +R+E
Sbjct: 74 VDKVLAQ-SRHE 84
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 81 AEKVV 85
+ +
Sbjct: 68 VDAAM 72
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 EKVV 85
+ +
Sbjct: 69 DAAM 72
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVKGH 173
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 EKVV 85
+ +
Sbjct: 69 DAAM 72
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 EKVV 85
+ +
Sbjct: 69 DAAM 72
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus
GN=HNRNPA1 PE=1 SV=2
Length = 320
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 82 EKVV 85
+ +
Sbjct: 69 DAAM 72
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
+L+VG+L +++ + L +F G +E +++ ET RS G+GF+T S E A+K +E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 88 FNRYE 92
N +E
Sbjct: 311 LNGFE 315
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVEE
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 81 AEKVV 85
+ +
Sbjct: 68 VDAAM 72
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT + +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>sp|Q1ZXC2|PAP1B_DICDI Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum
GN=pabpc1B PE=3 SV=1
Length = 814
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
+Y + D LF+ N+ +D + + F + G + I I E R+ GFGF++ S +
Sbjct: 462 EYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTI-IGIKIVQDENARNKGFGFISFSEI 520
Query: 79 EEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAI 114
+EA+K ++ N + G F+ D +++N+ +
Sbjct: 521 QEAQKALDSLNGFTFGSKQIQVSFSNKDNNQINNKL 556
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD--RSTGFGFVTMST 77
Y P + L+VG+L DV+ L LF++ G I+ + R+++ RS G+ +V
Sbjct: 177 YQPPHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFN 236
Query: 78 VEEAEKVVEMFN 89
+AE+ ++ N
Sbjct: 237 NHDAERALDTLN 248
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL VD+ L F+ G + +V F E S G+G+V T + AEK +E
Sbjct: 276 IFVKNLEKGVDNAMLYDTFSSFGNILSCKVEF--EKGISKGYGYVHFETNDSAEKAIEKV 333
Query: 89 N 89
N
Sbjct: 334 N 334
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E+ KLFVG L ++ D + L F+ G + V+ RET RS GFGF+T + E A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MRAMN 68
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 GGEESFGDGSEVDYSEPPED-AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD 65
GG E F +GS+++ S+ +D K+F+G L +D + L ++ G V + T
Sbjct: 9 GGAEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTG 68
Query: 66 RSTGFGFVTMSTVEEAEKVVEM 87
RS GFGFV EKV+E+
Sbjct: 69 RSRGFGFVLFKDAASVEKVLEL 90
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEA 81
EPP+ K+FVG L D E++ F G +E E+ +T+ GF F+T + E
Sbjct: 112 EPPK--KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPV 169
Query: 82 EKVVE 86
+K++E
Sbjct: 170 KKLLE 174
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV 78
D EP + KLF+G L ++ + L F Q G + V+ +T RS GFGFVT S V
Sbjct: 19 DPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCV 78
Query: 79 EEAE 82
EE +
Sbjct: 79 EEVD 82
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L G +E EV+ R++ + GF FVT + +K+V
Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 176
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 177 VQKYHTINGH 186
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
E A +FVG L + +D E L F G V + VI+ R TDRS G+G+V AEK
Sbjct: 166 EPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKA 225
Query: 85 VE 86
++
Sbjct: 226 IQ 227
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 10 ESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTG 69
+ FGD SEP + LF+GNL ++ D + + LF + G V + + ET++ G
Sbjct: 256 KKFGDTP----SEPSDT--LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKG 309
Query: 70 FGFVTMSTVEEAEKVVEMF 88
FG+V S +E+A+K ++
Sbjct: 310 FGYVQFSNMEDAKKALDAL 328
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84
++ KLFVG L ++ E L +F++ G V V+ RE+ RS GFGFVT E+A+
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 85 VEMFN 89
+ N
Sbjct: 64 MMAMN 68
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
EP + KLF+G L ++ E L F Q G + V+ T RS GFGFVT +TVE+
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEK 67
Query: 81 AEKVV 85
+ +
Sbjct: 68 VDAAM 72
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F Q G +E+ E++ R + + GF FVT +K+V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV-- 163
Query: 88 FNRYETGCSH 97
+Y T H
Sbjct: 164 IQKYHTVNGH 173
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86
+KLFVG L + D L F G V + VI RET RS GFGFV+ S + A ++
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK-VVEM 87
LFV NL +DSEKL F G + S+V+ + +S GFGFV ST EEA K + EM
Sbjct: 353 LFVKNLDEQIDSEKLEEEFKPFGTITSSKVMV-DDAGKSKGFGFVCFSTPEEATKAITEM 411
Query: 88 FNRYETG 94
R G
Sbjct: 412 NQRMVNG 418
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83
++ KLF+G L ++ + + L F + G + V+ RET RS GFGFVT V++A+
Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61
Query: 84 VVEMFN 89
+ N
Sbjct: 62 AMMAMN 67
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
+ P + + FVG L + D L F+Q G V S++I RET RS GFGFVT +
Sbjct: 2 ASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKS 61
Query: 81 AEKVVEMFN 89
+ +E N
Sbjct: 62 MKDAIEGMN 70
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 89 NRYETG 94
N Y G
Sbjct: 364 NGYRLG 369
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 17 EVDYSEPP----EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGF 72
+V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF
Sbjct: 123 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 182
Query: 73 VTMSTVEEAEKVVEMFN 89
+ EAE+ ++ N
Sbjct: 183 IRFDKRIEAEEAIKGLN 199
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 83 KVVEMFN 89
K + N
Sbjct: 107 KAINTLN 113
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEE 80
EP + KLF+G L ++ + L F Q G + V+ +T RS GFGFVT S VEE
Sbjct: 21 KEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEE 80
Query: 81 AE 82
+
Sbjct: 81 VD 82
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87
K+FVG ++ D + L F G +E EV+ R++ + GF FVT + +K+V
Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 176
Query: 88 FNRYET 93
+Y T
Sbjct: 177 VQKYHT 182
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88
+FV NL D D L LF G V +VI T++ GFGFVTM+ +EA +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 89 NRYETG 94
N Y G
Sbjct: 352 NGYRLG 357
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 17 EVDYSEPP----EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGF 72
+V Y+ P DA L+V L + ++L LF+Q G + S ++ + T S G GF
Sbjct: 111 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 170
Query: 73 VTMSTVEEAEKVVEMFN 89
+ EAE+ ++ N
Sbjct: 171 IRFDKRIEAEEAIKGLN 187
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 25 EDAK--LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAE 82
+D+K L V L ++ E+ LF G +E +++ + T +S G+GFV ++AE
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 KVVEMFN 89
K + N
Sbjct: 95 KAINTLN 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,478,806
Number of Sequences: 539616
Number of extensions: 1894343
Number of successful extensions: 7045
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 5825
Number of HSP's gapped (non-prelim): 1346
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)