Query 040490
Match_columns 128
No_of_seqs 123 out of 1119
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 4.3E-23 9.4E-28 149.7 15.4 104 21-124 102-262 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.6E-22 1.6E-26 143.6 13.6 100 25-124 2-158 (352)
3 KOG0144 RNA-binding protein CU 99.9 2E-21 4.3E-26 140.5 11.5 99 23-121 31-189 (510)
4 TIGR01645 half-pint poly-U bin 99.9 3.1E-21 6.8E-26 147.4 12.9 102 24-125 105-274 (612)
5 KOG0117 Heterogeneous nuclear 99.8 6E-20 1.3E-24 133.3 12.2 72 21-92 78-149 (506)
6 TIGR01628 PABP-1234 polyadenyl 99.8 1.2E-19 2.6E-24 139.3 13.0 97 28-124 2-156 (562)
7 TIGR01648 hnRNP-R-Q heterogene 99.8 2.8E-19 6E-24 136.4 14.3 96 23-119 55-204 (578)
8 KOG0145 RNA-binding protein EL 99.8 4.4E-19 9.4E-24 121.7 12.0 98 26-123 41-195 (360)
9 TIGR01622 SF-CC1 splicing fact 99.8 6.8E-19 1.5E-23 132.1 13.2 100 24-124 87-255 (457)
10 KOG0148 Apoptosis-promoting RN 99.8 3.2E-19 7E-24 122.6 10.1 98 26-123 62-226 (321)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1.6E-18 3.4E-23 131.6 13.5 69 24-92 293-361 (509)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.7E-18 1E-22 123.7 13.1 66 25-90 88-153 (352)
13 KOG0131 Splicing factor 3b, su 99.8 3.5E-18 7.7E-23 111.5 7.9 103 23-125 6-167 (203)
14 TIGR01628 PABP-1234 polyadenyl 99.7 3.6E-17 7.7E-22 125.7 13.4 101 24-125 176-354 (562)
15 TIGR01622 SF-CC1 splicing fact 99.7 1.1E-16 2.4E-21 120.2 12.9 67 25-91 185-251 (457)
16 PLN03134 glycine-rich RNA-bind 99.7 1.2E-16 2.5E-21 103.3 10.9 70 23-92 31-100 (144)
17 KOG0145 RNA-binding protein EL 99.7 4.6E-17 1E-21 111.9 8.2 72 21-92 122-193 (360)
18 KOG0124 Polypyrimidine tract-b 99.7 2.8E-17 6E-22 117.5 6.4 92 27-118 114-273 (544)
19 KOG0149 Predicted RNA-binding 99.7 6.2E-17 1.3E-21 109.5 6.9 80 25-104 11-90 (247)
20 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 4.9E-16 1.1E-20 117.6 12.0 94 25-124 1-161 (481)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 2.4E-15 5.1E-20 113.9 13.9 64 24-92 273-337 (481)
22 PF00076 RRM_1: RNA recognitio 99.7 1.5E-15 3.3E-20 86.0 8.5 63 29-92 1-63 (70)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.4E-15 5.1E-20 114.3 11.4 96 23-125 172-365 (509)
24 KOG0127 Nucleolar protein fibr 99.6 1.7E-15 3.7E-20 112.8 10.2 102 25-126 4-187 (678)
25 KOG0146 RNA-binding protein ET 99.6 2.5E-15 5.4E-20 103.7 8.0 68 24-92 17-84 (371)
26 KOG0122 Translation initiation 99.6 5.1E-15 1.1E-19 100.7 9.1 72 21-92 184-255 (270)
27 TIGR01648 hnRNP-R-Q heterogene 99.6 5.3E-15 1.2E-19 113.2 10.3 102 24-125 136-297 (578)
28 KOG0121 Nuclear cap-binding pr 99.6 1.9E-15 4.1E-20 93.8 6.1 70 23-92 33-102 (153)
29 KOG0123 Polyadenylate-binding 99.6 1.5E-14 3.3E-19 105.9 10.7 98 23-123 73-234 (369)
30 KOG0144 RNA-binding protein CU 99.6 5.1E-15 1.1E-19 107.6 5.8 68 24-92 122-189 (510)
31 TIGR01659 sex-lethal sex-letha 99.6 3.4E-14 7.3E-19 103.5 9.4 68 25-92 192-259 (346)
32 PF14259 RRM_6: RNA recognitio 99.5 9.6E-14 2.1E-18 79.0 8.6 62 29-91 1-62 (70)
33 KOG0123 Polyadenylate-binding 99.5 1.5E-13 3.2E-18 100.8 10.5 94 27-127 2-145 (369)
34 KOG0109 RNA-binding protein LA 99.5 2.9E-14 6.3E-19 99.3 6.0 90 27-124 3-139 (346)
35 KOG4205 RNA-binding protein mu 99.5 1.4E-14 3E-19 103.4 4.2 99 25-123 5-169 (311)
36 TIGR01645 half-pint poly-U bin 99.5 2.3E-13 4.9E-18 104.7 10.1 76 25-100 203-279 (612)
37 KOG0110 RNA-binding protein (R 99.5 1.8E-13 3.8E-18 104.6 9.2 102 27-128 516-686 (725)
38 KOG0105 Alternative splicing f 99.5 2.5E-13 5.5E-18 89.4 8.0 95 24-121 4-174 (241)
39 KOG0127 Nucleolar protein fibr 99.5 3.2E-13 6.8E-18 100.9 9.3 64 25-88 291-354 (678)
40 KOG0113 U1 small nuclear ribon 99.5 3.9E-13 8.4E-18 93.9 9.0 70 23-92 98-167 (335)
41 KOG0107 Alternative splicing f 99.5 2.3E-13 4.9E-18 88.7 7.0 65 23-92 7-71 (195)
42 KOG0130 RNA-binding protein RB 99.5 3.9E-13 8.5E-18 84.3 7.6 84 18-101 64-148 (170)
43 KOG0125 Ataxin 2-binding prote 99.5 5.6E-13 1.2E-17 94.2 8.8 69 22-92 92-160 (376)
44 KOG0126 Predicted RNA-binding 99.4 8.9E-15 1.9E-19 95.8 -0.3 80 24-103 33-113 (219)
45 PLN03120 nucleic acid binding 99.4 7.8E-13 1.7E-17 91.9 8.7 63 26-92 4-66 (260)
46 KOG0147 Transcriptional coacti 99.4 6E-13 1.3E-17 99.2 7.9 65 28-92 280-344 (549)
47 KOG0148 Apoptosis-promoting RN 99.4 1.1E-12 2.4E-17 90.7 8.3 102 23-124 3-131 (321)
48 smart00362 RRM_2 RNA recogniti 99.4 2.3E-12 5E-17 72.4 8.3 63 28-92 1-63 (72)
49 KOG4207 Predicted splicing fac 99.4 7.1E-13 1.5E-17 88.6 6.0 87 21-107 8-95 (256)
50 PLN03121 nucleic acid binding 99.4 3.4E-12 7.5E-17 87.6 8.7 65 24-92 3-67 (243)
51 KOG0114 Predicted RNA-binding 99.4 5.4E-12 1.2E-16 75.8 8.4 90 21-115 13-102 (124)
52 smart00360 RRM RNA recognition 99.4 6.4E-12 1.4E-16 70.3 7.7 62 31-92 1-62 (71)
53 COG0724 RNA-binding proteins ( 99.4 5.2E-12 1.1E-16 87.6 8.7 76 26-101 115-191 (306)
54 PLN03213 repressor of silencin 99.3 9E-12 1.9E-16 92.6 8.8 72 24-99 8-82 (759)
55 cd00590 RRM RRM (RNA recogniti 99.3 2.6E-11 5.7E-16 68.3 8.8 64 28-92 1-64 (74)
56 KOG0108 mRNA cleavage and poly 99.3 1.4E-11 3.1E-16 91.6 8.6 77 27-103 19-96 (435)
57 KOG0111 Cyclophilin-type pepti 99.3 2.7E-12 5.8E-17 86.7 2.9 71 22-92 6-76 (298)
58 KOG1548 Transcription elongati 99.3 9.8E-11 2.1E-15 83.5 10.6 69 23-92 131-207 (382)
59 KOG0147 Transcriptional coacti 99.3 6.4E-12 1.4E-16 93.8 4.7 103 21-124 174-347 (549)
60 KOG4212 RNA-binding protein hn 99.3 1.8E-10 3.9E-15 84.6 11.8 66 26-92 44-110 (608)
61 KOG0124 Polypyrimidine tract-b 99.2 1.3E-10 2.7E-15 83.8 8.7 68 25-92 209-276 (544)
62 KOG0146 RNA-binding protein ET 99.2 6.9E-11 1.5E-15 82.0 6.8 78 19-96 278-355 (371)
63 KOG4206 Spliceosomal protein s 99.1 1.8E-09 3.9E-14 73.1 10.6 65 25-92 8-76 (221)
64 KOG4211 Splicing factor hnRNP- 99.1 1.1E-09 2.5E-14 81.2 10.2 92 23-117 7-165 (510)
65 smart00361 RRM_1 RNA recogniti 99.1 7.2E-10 1.6E-14 63.1 7.0 53 40-92 2-61 (70)
66 KOG0120 Splicing factor U2AF, 99.1 4.8E-10 1E-14 84.3 7.2 74 19-92 282-355 (500)
67 KOG0106 Alternative splicing f 99.1 2.4E-10 5.3E-15 77.6 4.5 93 27-127 2-163 (216)
68 KOG0131 Splicing factor 3b, su 99.0 7.6E-10 1.6E-14 72.8 6.6 72 22-93 92-164 (203)
69 KOG1457 RNA binding protein (c 99.0 7.4E-09 1.6E-13 70.3 10.6 70 23-92 31-101 (284)
70 KOG0117 Heterogeneous nuclear 99.0 1.3E-09 2.8E-14 80.2 6.6 74 26-107 259-333 (506)
71 KOG0415 Predicted peptidyl pro 99.0 1.7E-09 3.6E-14 77.8 6.4 71 22-92 235-305 (479)
72 KOG4208 Nucleolar RNA-binding 99.0 6E-09 1.3E-13 69.8 8.4 72 23-94 46-118 (214)
73 KOG0132 RNA polymerase II C-te 99.0 2.4E-09 5.1E-14 83.2 7.3 61 26-92 421-481 (894)
74 PF04059 RRM_2: RNA recognitio 98.9 5.9E-08 1.3E-12 58.4 10.7 89 27-115 2-94 (97)
75 KOG4454 RNA binding protein (R 98.8 2.6E-09 5.7E-14 72.2 3.1 102 23-126 6-154 (267)
76 KOG1456 Heterogeneous nuclear 98.8 5.9E-08 1.3E-12 70.4 9.6 99 19-123 24-185 (494)
77 PF13893 RRM_5: RNA recognitio 98.8 4E-08 8.6E-13 53.3 6.1 45 43-92 1-45 (56)
78 KOG4205 RNA-binding protein mu 98.7 1.8E-08 4E-13 72.3 5.2 62 25-86 96-157 (311)
79 KOG0153 Predicted RNA-binding 98.7 7.2E-08 1.6E-12 69.1 6.9 68 19-92 221-288 (377)
80 KOG4212 RNA-binding protein hn 98.7 1.2E-07 2.6E-12 70.1 8.1 71 23-98 533-604 (608)
81 KOG0110 RNA-binding protein (R 98.7 3.1E-08 6.8E-13 76.4 5.3 74 24-97 611-685 (725)
82 KOG0533 RRM motif-containing p 98.6 3.2E-07 7E-12 63.7 8.4 79 23-102 80-159 (243)
83 KOG0116 RasGAP SH3 binding pro 98.6 1.3E-07 2.7E-12 70.5 6.3 64 25-88 287-350 (419)
84 KOG4660 Protein Mei2, essentia 98.6 1.2E-07 2.7E-12 71.4 5.5 65 23-92 72-136 (549)
85 KOG4661 Hsp27-ERE-TATA-binding 98.6 3.7E-07 8E-12 69.6 8.0 68 25-92 404-471 (940)
86 KOG0109 RNA-binding protein LA 98.6 9.2E-08 2E-12 67.3 4.2 63 22-92 74-136 (346)
87 KOG4209 Splicing factor RNPS1, 98.5 2.4E-07 5.3E-12 64.2 5.1 71 21-92 96-166 (231)
88 KOG0226 RNA-binding proteins [ 98.5 5.4E-07 1.2E-11 62.4 6.5 70 24-93 188-257 (290)
89 KOG0129 Predicted RNA-binding 98.5 1.9E-06 4.1E-11 64.7 9.7 69 22-91 255-329 (520)
90 KOG1365 RNA-binding protein Fu 98.5 1.5E-06 3.2E-11 63.4 8.5 66 26-92 161-230 (508)
91 KOG0151 Predicted splicing reg 98.5 8.7E-07 1.9E-11 68.9 7.6 79 24-102 172-254 (877)
92 KOG1190 Polypyrimidine tract-b 98.4 3.4E-06 7.5E-11 62.0 10.1 96 26-126 297-481 (492)
93 KOG4211 Splicing factor hnRNP- 98.3 8.1E-06 1.8E-10 61.2 10.0 64 25-89 102-166 (510)
94 KOG4849 mRNA cleavage factor I 98.3 7.1E-07 1.5E-11 64.4 2.9 67 26-92 80-148 (498)
95 smart00361 RRM_1 RNA recogniti 98.2 2.1E-06 4.5E-11 48.7 3.5 33 94-126 34-66 (70)
96 KOG1995 Conserved Zn-finger pr 98.2 8.4E-06 1.8E-10 58.9 6.8 87 17-103 57-152 (351)
97 KOG1190 Polypyrimidine tract-b 98.1 4.8E-06 1E-10 61.2 5.3 54 24-83 26-79 (492)
98 KOG1456 Heterogeneous nuclear 98.0 0.00022 4.8E-09 52.2 11.1 67 21-92 282-349 (494)
99 PF08777 RRM_3: RNA binding mo 97.9 4.7E-05 1E-09 46.6 5.9 60 26-91 1-60 (105)
100 KOG0105 Alternative splicing f 97.9 0.00023 4.9E-09 47.6 8.7 74 12-92 101-174 (241)
101 KOG0122 Translation initiation 97.9 1.5E-05 3.2E-10 55.1 3.2 30 93-122 227-256 (270)
102 KOG0120 Splicing factor U2AF, 97.8 2.4E-05 5.2E-10 59.5 4.5 99 23-128 172-362 (500)
103 KOG0128 RNA-binding protein SA 97.8 2.9E-06 6.2E-11 67.1 -1.2 96 24-119 665-799 (881)
104 PLN03134 glycine-rich RNA-bind 97.7 3.7E-05 8E-10 49.7 3.4 33 93-125 72-104 (144)
105 KOG1457 RNA binding protein (c 97.7 5.8E-05 1.3E-09 51.7 4.0 66 23-92 207-272 (284)
106 PF00076 RRM_1: RNA recognitio 97.7 4.1E-05 8.9E-10 42.6 2.7 32 93-124 35-66 (70)
107 KOG0129 Predicted RNA-binding 97.7 0.00024 5.2E-09 53.8 7.1 66 21-86 365-431 (520)
108 KOG2314 Translation initiation 97.6 0.0003 6.5E-09 54.0 7.6 84 26-110 58-147 (698)
109 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00022 4.8E-09 38.2 5.0 52 27-85 2-53 (53)
110 KOG1365 RNA-binding protein Fu 97.6 0.00076 1.6E-08 49.7 8.7 91 22-115 276-369 (508)
111 KOG4206 Spliceosomal protein s 97.6 0.00039 8.4E-09 47.6 6.6 65 23-92 143-207 (221)
112 KOG4307 RNA binding protein RB 97.5 0.00076 1.6E-08 53.1 8.7 70 24-93 864-934 (944)
113 KOG4207 Predicted splicing fac 97.5 0.00022 4.7E-09 48.4 4.4 34 93-126 51-84 (256)
114 KOG0112 Large RNA-binding prot 97.5 4.1E-05 8.9E-10 61.1 1.0 103 23-126 369-520 (975)
115 KOG3152 TBP-binding protein, a 97.4 0.00027 6E-09 49.2 4.6 69 25-93 73-153 (278)
116 PF13893 RRM_5: RNA recognitio 97.4 0.0002 4.4E-09 38.4 2.9 29 97-125 21-49 (56)
117 KOG0226 RNA-binding proteins [ 97.4 0.00028 6.1E-09 49.2 4.2 32 93-124 228-259 (290)
118 KOG4210 Nuclear localization s 97.3 0.00019 4.1E-09 51.4 2.8 63 25-87 183-246 (285)
119 PF11608 Limkain-b1: Limkain b 97.3 0.0016 3.5E-08 38.1 6.1 56 27-92 3-63 (90)
120 smart00360 RRM RNA recognition 97.3 0.00049 1.1E-08 37.5 3.8 32 93-124 34-65 (71)
121 PF08675 RNA_bind: RNA binding 97.3 0.0028 6.2E-08 37.0 6.8 58 24-90 7-64 (87)
122 KOG0106 Alternative splicing f 97.2 0.00039 8.5E-09 47.7 3.7 64 21-92 94-157 (216)
123 KOG0112 Large RNA-binding prot 97.1 0.00072 1.6E-08 54.3 4.6 82 22-109 451-532 (975)
124 PF14259 RRM_6: RNA recognitio 97.1 0.00045 9.8E-09 38.6 2.6 33 93-125 35-67 (70)
125 KOG2193 IGF-II mRNA-binding pr 97.1 0.00018 3.9E-09 53.5 1.0 60 27-92 2-61 (584)
126 KOG0107 Alternative splicing f 97.0 0.00054 1.2E-08 45.3 2.1 32 93-124 43-74 (195)
127 KOG0111 Cyclophilin-type pepti 96.9 0.00056 1.2E-08 46.9 1.5 52 71-126 30-81 (298)
128 smart00362 RRM_2 RNA recogniti 96.8 0.0018 3.8E-08 35.4 3.3 30 94-123 36-65 (72)
129 KOG0149 Predicted RNA-binding 96.8 0.001 2.2E-08 45.9 2.4 25 93-117 50-74 (247)
130 KOG4208 Nucleolar RNA-binding 96.8 0.0016 3.4E-08 44.1 3.2 30 93-122 88-117 (214)
131 COG5175 MOT2 Transcriptional r 96.7 0.0052 1.1E-07 44.8 5.8 75 26-100 114-198 (480)
132 KOG0125 Ataxin 2-binding prote 96.7 0.001 2.2E-08 48.0 2.3 35 93-127 132-166 (376)
133 KOG1855 Predicted RNA-binding 96.7 0.0035 7.5E-08 46.8 4.8 69 23-91 228-309 (484)
134 KOG4210 Nuclear localization s 96.7 0.0017 3.7E-08 46.6 3.1 100 25-125 87-254 (285)
135 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0087 1.9E-07 36.3 5.2 66 25-92 5-77 (100)
136 KOG2416 Acinus (induces apopto 96.6 0.0066 1.4E-07 47.1 5.7 93 19-117 437-531 (718)
137 KOG0108 mRNA cleavage and poly 96.6 0.0026 5.7E-08 48.1 3.5 35 93-127 56-90 (435)
138 PF10309 DUF2414: Protein of u 96.6 0.033 7.1E-07 30.7 6.9 56 25-88 4-62 (62)
139 KOG0130 RNA-binding protein RB 96.3 0.0093 2E-07 38.1 4.5 33 93-125 110-142 (170)
140 KOG4307 RNA binding protein RB 96.3 0.016 3.5E-07 46.0 6.2 63 23-86 431-494 (944)
141 KOG0121 Nuclear cap-binding pr 96.1 0.025 5.4E-07 35.8 5.3 33 93-125 74-106 (153)
142 cd00590 RRM RRM (RNA recogniti 96.0 0.012 2.6E-07 32.1 3.5 29 95-123 38-66 (74)
143 KOG0115 RNA-binding protein p5 95.9 0.013 2.8E-07 41.1 3.7 63 27-90 32-94 (275)
144 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.043 9.4E-07 36.7 5.7 71 22-92 3-79 (176)
145 COG0724 RNA-binding proteins ( 95.7 0.015 3.2E-07 40.0 3.5 34 93-126 153-186 (306)
146 PLN03120 nucleic acid binding 95.6 0.019 4.2E-07 40.6 3.7 33 93-126 39-71 (260)
147 KOG0113 U1 small nuclear ribon 95.5 0.016 3.4E-07 41.6 3.0 35 93-127 139-173 (335)
148 KOG0128 RNA-binding protein SA 95.4 0.0081 1.8E-07 48.3 1.5 66 26-92 736-801 (881)
149 PF15023 DUF4523: Protein of u 95.2 0.19 4.1E-06 32.5 7.1 72 22-100 82-157 (166)
150 PLN03213 repressor of silencin 94.8 0.035 7.5E-07 42.6 3.3 31 97-127 48-80 (759)
151 PF04059 RRM_2: RNA recognitio 94.7 0.068 1.5E-06 32.2 3.9 31 93-123 41-71 (97)
152 KOG1548 Transcription elongati 94.7 0.12 2.7E-06 37.8 5.7 70 19-92 258-338 (382)
153 KOG0114 Predicted RNA-binding 94.5 0.044 9.6E-07 33.5 2.7 32 93-124 53-84 (124)
154 KOG4660 Protein Mei2, essentia 94.3 0.24 5.2E-06 38.4 6.8 69 50-118 413-483 (549)
155 KOG2202 U2 snRNP splicing fact 94.2 0.042 9.1E-07 38.6 2.5 64 42-106 84-149 (260)
156 PF07576 BRAP2: BRCA1-associat 94.0 0.87 1.9E-05 28.1 9.3 64 27-92 13-78 (110)
157 KOG4676 Splicing factor, argin 93.9 0.092 2E-06 39.1 3.8 59 28-86 9-70 (479)
158 PLN03121 nucleic acid binding 93.6 0.092 2E-06 36.7 3.3 32 93-125 40-71 (243)
159 KOG2314 Translation initiation 93.6 0.095 2.1E-06 40.8 3.5 34 93-126 101-134 (698)
160 KOG2253 U1 snRNP complex, subu 93.3 0.11 2.4E-06 41.0 3.6 64 20-92 34-97 (668)
161 KOG2591 c-Mpl binding protein, 93.0 0.61 1.3E-05 36.5 7.1 64 21-91 170-235 (684)
162 KOG2068 MOT2 transcription fac 93.0 0.099 2.2E-06 38.1 2.8 67 26-92 77-149 (327)
163 KOG4410 5-formyltetrahydrofola 92.2 1.2 2.6E-05 32.1 7.2 48 25-78 329-377 (396)
164 KOG4483 Uncharacterized conser 92.2 1.1 2.4E-05 33.7 7.3 72 25-113 390-462 (528)
165 PF11608 Limkain-b1: Limkain b 92.1 0.37 8.1E-06 28.3 3.9 32 96-127 38-69 (90)
166 KOG1996 mRNA splicing factor [ 91.3 0.88 1.9E-05 32.9 5.8 52 41-92 301-353 (378)
167 KOG0804 Cytoplasmic Zn-finger 91.2 1.7 3.7E-05 33.2 7.4 68 23-92 71-139 (493)
168 KOG4209 Splicing factor RNPS1, 90.2 0.38 8.2E-06 33.6 3.2 33 93-126 139-171 (231)
169 KOG0132 RNA polymerase II C-te 85.9 0.84 1.8E-05 37.1 3.0 45 79-123 436-483 (894)
170 KOG0126 Predicted RNA-binding 85.0 0.12 2.6E-06 34.7 -1.6 35 92-126 72-106 (219)
171 PF08952 DUF1866: Domain of un 84.1 8.3 0.00018 25.1 6.5 42 42-92 52-93 (146)
172 KOG2202 U2 snRNP splicing fact 84.0 0.8 1.7E-05 32.3 1.9 32 96-127 109-140 (260)
173 KOG1996 mRNA splicing factor [ 82.4 1.4 3E-05 31.9 2.6 27 99-125 331-357 (378)
174 KOG0151 Predicted splicing reg 82.1 1 2.2E-05 36.3 2.0 30 93-122 215-244 (877)
175 KOG2891 Surface glycoprotein [ 79.3 0.98 2.1E-05 32.5 1.0 53 23-75 146-215 (445)
176 PF10567 Nab6_mRNP_bdg: RNA-re 79.0 10 0.00022 27.6 6.0 83 22-104 11-107 (309)
177 KOG4574 RNA-binding protein (c 78.8 1.9 4.2E-05 35.5 2.6 63 28-96 300-365 (1007)
178 KOG0415 Predicted peptidyl pro 78.4 1.9 4.1E-05 32.1 2.3 33 93-125 277-309 (479)
179 KOG2318 Uncharacterized conser 76.5 7 0.00015 31.0 4.9 99 23-122 171-293 (650)
180 KOG0533 RRM motif-containing p 76.3 3.8 8.2E-05 28.9 3.2 30 93-122 120-149 (243)
181 KOG4285 Mitotic phosphoprotein 75.3 12 0.00027 27.3 5.6 73 29-109 200-272 (350)
182 PF03468 XS: XS domain; Inter 75.0 9.6 0.00021 23.7 4.5 57 27-86 9-75 (116)
183 KOG4661 Hsp27-ERE-TATA-binding 72.9 3.4 7.4E-05 32.8 2.5 30 93-122 443-472 (940)
184 PF15513 DUF4651: Domain of un 72.7 10 0.00023 20.8 3.7 20 41-60 9-28 (62)
185 KOG2135 Proteins containing th 71.5 4.2 9E-05 31.4 2.6 70 25-100 371-441 (526)
186 PF04847 Calcipressin: Calcipr 70.5 14 0.0003 25.0 4.8 58 39-102 8-68 (184)
187 PF08777 RRM_3: RNA binding mo 69.3 6.1 0.00013 24.0 2.6 26 94-119 34-59 (105)
188 PRK14548 50S ribosomal protein 69.0 21 0.00045 20.9 5.6 58 28-88 22-81 (84)
189 COG5175 MOT2 Transcriptional r 68.5 5.5 0.00012 29.6 2.7 28 100-127 168-195 (480)
190 KOG2416 Acinus (induces apopto 68.1 6 0.00013 31.5 2.9 32 93-124 477-508 (718)
191 PF11767 SET_assoc: Histone ly 66.7 20 0.00044 19.9 6.0 47 37-92 11-57 (66)
192 PF07292 NID: Nmi/IFP 35 domai 65.6 4.2 9.1E-05 24.1 1.3 26 23-48 49-74 (88)
193 KOG0153 Predicted RNA-binding 65.4 5.1 0.00011 29.7 2.0 26 93-118 260-285 (377)
194 PF11823 DUF3343: Protein of u 65.3 22 0.00047 19.8 4.9 52 70-121 3-63 (73)
195 TIGR03636 L23_arch archaeal ri 65.2 24 0.00052 20.3 5.7 57 28-87 15-73 (77)
196 PF01071 GARS_A: Phosphoribosy 64.9 29 0.00064 23.6 5.5 47 71-117 19-70 (194)
197 KOG4676 Splicing factor, argin 59.4 2 4.4E-05 32.3 -0.9 57 27-87 152-208 (479)
198 KOG4849 mRNA cleavage factor I 51.1 47 0.001 25.0 4.9 46 72-117 88-144 (498)
199 PF03439 Spt5-NGN: Early trans 46.2 29 0.00062 20.1 2.7 26 66-91 42-67 (84)
200 PHA01632 hypothetical protein 40.1 35 0.00077 18.3 2.2 20 30-49 20-39 (64)
201 PRK01178 rps24e 30S ribosomal 38.2 92 0.002 18.8 5.2 45 37-82 30-79 (99)
202 KOG2295 C2H2 Zn-finger protein 37.9 4.3 9.3E-05 32.0 -2.1 69 24-92 229-297 (648)
203 smart00596 PRE_C2HC PRE_C2HC d 36.9 80 0.0017 17.8 4.1 37 41-77 2-39 (69)
204 PF08442 ATP-grasp_2: ATP-gras 36.1 1.4E+02 0.003 20.4 5.2 70 39-123 3-81 (202)
205 PF02714 DUF221: Domain of unk 36.0 41 0.00088 24.4 2.7 21 71-91 1-21 (325)
206 PF09707 Cas_Cas2CT1978: CRISP 35.9 94 0.002 18.3 4.2 49 26-77 25-73 (86)
207 COG0030 KsgA Dimethyladenosine 35.9 67 0.0015 23.0 3.7 36 26-61 95-130 (259)
208 PF07530 PRE_C2HC: Associated 35.5 83 0.0018 17.5 4.2 39 41-79 2-41 (68)
209 KOG4454 RNA binding protein (R 34.8 8.7 0.00019 26.9 -0.8 66 26-92 80-149 (267)
210 PF15407 Spo7_2_N: Sporulation 34.7 13 0.00029 20.7 0.1 24 25-48 26-49 (67)
211 COG5638 Uncharacterized conser 34.1 2.2E+02 0.0049 22.1 6.9 37 23-59 143-184 (622)
212 PRK11558 putative ssRNA endonu 34.0 1E+02 0.0022 18.6 3.8 49 26-77 27-75 (97)
213 KOG4008 rRNA processing protei 33.4 48 0.001 23.5 2.6 33 23-55 37-69 (261)
214 COG5193 LHP1 La protein, small 32.3 23 0.00051 26.9 1.0 60 27-86 175-244 (438)
215 KOG3346 Phosphatidylethanolami 31.3 1.5E+02 0.0032 20.2 4.6 44 27-79 87-132 (185)
216 PF11411 DNA_ligase_IV: DNA li 30.7 46 0.001 16.2 1.5 16 36-51 19-34 (36)
217 KOG1995 Conserved Zn-finger pr 29.2 74 0.0016 23.8 3.1 33 92-124 111-143 (351)
218 PF05036 SPOR: Sporulation rel 28.3 98 0.0021 16.5 3.0 47 72-118 9-65 (76)
219 KOG2944 Glyoxalase [Carbohydra 27.9 83 0.0018 20.9 2.8 40 64-103 110-156 (170)
220 PTZ00071 40S ribosomal protein 26.5 1.8E+02 0.0039 18.6 4.9 45 37-82 35-85 (132)
221 PTZ00338 dimethyladenosine tra 24.8 96 0.0021 22.5 3.0 29 28-56 103-131 (294)
222 COG0481 LepA Membrane GTPase L 24.0 1.3E+02 0.0028 24.0 3.6 49 25-74 296-345 (603)
223 PRK00274 ksgA 16S ribosomal RN 23.2 1.3E+02 0.0028 21.4 3.4 22 28-49 107-128 (272)
224 PF10281 Ish1: Putative stress 22.9 84 0.0018 15.0 1.8 17 37-53 3-19 (38)
225 KOG1295 Nonsense-mediated deca 21.9 1.9E+02 0.004 22.0 4.0 68 25-92 6-76 (376)
226 cd00027 BRCT Breast Cancer Sup 21.5 1.3E+02 0.0028 15.2 3.2 26 27-52 2-27 (72)
227 COG5507 Uncharacterized conser 20.2 1.6E+02 0.0035 17.9 2.8 24 94-117 63-86 (117)
228 PF15063 TC1: Thyroid cancer p 20.2 73 0.0016 18.3 1.3 28 26-53 25-52 (79)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.91 E-value=4.3e-23 Score=149.71 Aligned_cols=104 Identities=21% Similarity=0.364 Sum_probs=96.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--------
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-------- 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-------- 92 (128)
......++|||++||+++++++|+++|..+|+|.+++++.++.+++++|||||+|.++++|++|++.|++..
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345567899999999999999999999999999999999999999999999999999999999999998865
Q ss_pred -------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 93 -------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 93 -------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
++++++|+||+|.++++|++||..||+..+.
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 6788899999999999999999999998664
Q ss_pred C
Q 040490 124 L 124 (128)
Q Consensus 124 ~ 124 (128)
.
T Consensus 262 g 262 (346)
T TIGR01659 262 G 262 (346)
T ss_pred C
Confidence 3
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.88 E-value=7.6e-22 Score=143.56 Aligned_cols=100 Identities=30% Similarity=0.486 Sum_probs=93.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc------------
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------------ 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------------ 92 (128)
+..+|||+|||+++++++|+++|.+||+|.++.++.++.+++++|||||+|.+.++|..|++.|++..
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ---------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 ---------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ---------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.+.+++|+||+|.+.++|++|+..|||..+..
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 46789999999999999999999999976543
No 3
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2e-21 Score=140.51 Aligned_cols=99 Identities=29% Similarity=0.417 Sum_probs=94.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc----------
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---------- 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---------- 92 (128)
..+..++|||.+|+.|+|++|+.+|++||.|.+|.+++|+.|+.++|||||.|.+..+|.+|+..||+..
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4566789999999999999999999999999999999999999999999999999999999999999876
Q ss_pred --------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCC
Q 040490 93 --------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQA 121 (128)
Q Consensus 93 --------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~ 121 (128)
.+.+|||+||+|.+++-|..||++|||.+
T Consensus 111 vk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 111 VKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 78999999999999999999999999864
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=3.1e-21 Score=147.37 Aligned_cols=102 Identities=19% Similarity=0.344 Sum_probs=94.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
...++|||+|||+++++++|+++|.+||.|.++.++.++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999999999999999999999999999999999999999999999887754
Q ss_pred ---------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHH
Q 040490 93 ---------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIA 115 (128)
Q Consensus 93 ---------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~ 115 (128)
+++++|||||+|.+.++|.+|+.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 56789999999999999999999
Q ss_pred HhcCCCccCC
Q 040490 116 ALDGQARILP 125 (128)
Q Consensus 116 ~~~g~~~~~~ 125 (128)
.|||..+...
T Consensus 265 amNg~elgGr 274 (612)
T TIGR01645 265 SMNLFDLGGQ 274 (612)
T ss_pred HhCCCeeCCe
Confidence 9998866544
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=6e-20 Score=133.33 Aligned_cols=72 Identities=31% Similarity=0.563 Sum_probs=68.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+.++.++-||||.||.++.+++|+-+|++.|+|-++.+|.|+.++.+||||||.|.+.+.|++|++.||+..
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E 149 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE 149 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc
Confidence 344788999999999999999999999999999999999999999999999999999999999999999995
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.83 E-value=1.2e-19 Score=139.30 Aligned_cols=97 Identities=33% Similarity=0.473 Sum_probs=90.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc---------------
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE--------------- 92 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--------------- 92 (128)
+|||+|||+++++++|+++|.++|+|.+|.++++..|++++|||||+|.+.++|.+|+..+++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999999998873
Q ss_pred -------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 -------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 -------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.+++++|+||+|.+.++|++|+..+||..+..
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~ 156 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLND 156 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecC
Confidence 56789999999999999999999999876544
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.83 E-value=2.8e-19 Score=136.39 Aligned_cols=96 Identities=27% Similarity=0.460 Sum_probs=87.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc----------
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---------- 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---------- 92 (128)
+...++|||+|||+++++++|+++|.++|.|.+++++.+ .+++++|||||+|.+.++|++|++.|++..
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445799999999999999999999999999999999999 789999999999999999999999998753
Q ss_pred --------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcC
Q 040490 93 --------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDG 119 (128)
Q Consensus 93 --------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g 119 (128)
.+++++|+||+|.++++|.+|+..|+.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 246799999999999999999988754
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=4.4e-19 Score=121.73 Aligned_cols=98 Identities=30% Similarity=0.512 Sum_probs=92.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-------------
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------------- 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------------- 92 (128)
...+.|.-||..+++++++.+|.+.|+|.+|++++|+.++.+-||+||.|.++.+|++|+..|++.-
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 4568888999999999999999999999999999999999999999999999999999999999975
Q ss_pred --------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 93 --------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 93 --------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
+|.+||++||.|+.+.+|+.||+.|||..+.
T Consensus 121 Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~ 195 (360)
T KOG0145|consen 121 SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS 195 (360)
T ss_pred ChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC
Confidence 8999999999999999999999999998654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.81 E-value=6.8e-19 Score=132.14 Aligned_cols=100 Identities=27% Similarity=0.427 Sum_probs=90.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
.+.++|||+|||..+++++|+++|.++|.|..+.++.++.+++++|||||+|.+.++|.+|+. +++..
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 457899999999999999999999999999999999999999999999999999999999996 55432
Q ss_pred ----------------------------------------------------------cCCcccEEEEEeCCHHHHHHHH
Q 040490 93 ----------------------------------------------------------TGCSHGFGFFTMSDESKLNDAI 114 (128)
Q Consensus 93 ----------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~ 114 (128)
++++++|+||+|.+.++|.+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 4688999999999999999999
Q ss_pred HHhcCCCccC
Q 040490 115 AALDGQARIL 124 (128)
Q Consensus 115 ~~~~g~~~~~ 124 (128)
..|||..+..
T Consensus 246 ~~l~g~~i~g 255 (457)
T TIGR01622 246 EVMNGFELAG 255 (457)
T ss_pred HhcCCcEECC
Confidence 9999966543
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.2e-19 Score=122.65 Aligned_cols=98 Identities=28% Similarity=0.430 Sum_probs=93.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-------------
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------------- 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------------- 92 (128)
-..+||+-|.++++-+.|++.|.+||+|.+.++++|..|++++||+||.|.+.++|++||..|++..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4579999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhc
Q 040490 93 ------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALD 118 (128)
Q Consensus 93 ------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~ 118 (128)
..+-.+|+||.|.++|.|..||..||
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mN 221 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMN 221 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhc
Confidence 67788999999999999999999999
Q ss_pred CCCcc
Q 040490 119 GQARI 123 (128)
Q Consensus 119 g~~~~ 123 (128)
|..+.
T Consensus 222 ntei~ 226 (321)
T KOG0148|consen 222 NTEIG 226 (321)
T ss_pred CceeC
Confidence 98764
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.80 E-value=1.6e-18 Score=131.63 Aligned_cols=69 Identities=16% Similarity=0.325 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..|++..
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~ 361 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD 361 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 446799999999999999999999999999999999998899999999999999999999999887665
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=4.7e-18 Score=123.68 Aligned_cols=66 Identities=24% Similarity=0.452 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
..++|||+|||+++++++|+++|.+||.+..+.++.+..++.++|||||+|.+.++|++|++.|++
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 567899999999999999999999999999999999888889999999999999999999987764
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.76 E-value=3.5e-18 Score=111.52 Aligned_cols=103 Identities=34% Similarity=0.493 Sum_probs=95.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc----------
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---------- 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---------- 92 (128)
.+...+||||||+.-++++.|.++|-+.|+|..+++..++.+..++||||++|.++++|+-|++.|+...
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999888554
Q ss_pred -------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 93 -------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 93 -------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
++.+++|+|+.|.+.+.+.+|+..|||..+-
T Consensus 86 as~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 86 ASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred cccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 6889999999999999999999999998665
Q ss_pred CC
Q 040490 124 LP 125 (128)
Q Consensus 124 ~~ 125 (128)
-+
T Consensus 166 nr 167 (203)
T KOG0131|consen 166 NR 167 (203)
T ss_pred CC
Confidence 44
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.75 E-value=3.6e-17 Score=125.74 Aligned_cols=101 Identities=33% Similarity=0.493 Sum_probs=90.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
...++|||+|||+++++++|+++|..||.|.++.++.+. ++.++|||||.|.+.++|.+|++.+++..
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 345789999999999999999999999999999999884 78899999999999999999998776533
Q ss_pred -------------------------------------------------------------------cCCcccEEEEEeC
Q 040490 93 -------------------------------------------------------------------TGCSHGFGFFTMS 105 (128)
Q Consensus 93 -------------------------------------------------------------------~~~~~~~~fv~f~ 105 (128)
.+++++|+||+|.
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 5788999999999
Q ss_pred CHHHHHHHHHHhcCCCccCC
Q 040490 106 DESKLNDAIAALDGQARILP 125 (128)
Q Consensus 106 ~~~~a~~a~~~~~g~~~~~~ 125 (128)
+.++|++|+..|||..+..+
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk 354 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGK 354 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCc
Confidence 99999999999999766544
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.73 E-value=1.1e-16 Score=120.20 Aligned_cols=67 Identities=34% Similarity=0.626 Sum_probs=63.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 91 (128)
..++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..|++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~ 251 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGF 251 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCc
Confidence 3689999999999999999999999999999999999988999999999999999999999988873
No 16
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=1.2e-16 Score=103.33 Aligned_cols=70 Identities=34% Similarity=0.507 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....++|||+|||+++++++|+++|.+||.|.++.++.++.+++++|||||+|.+.++|+.|++.|++..
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~ 100 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 100 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 3456789999999999999999999999999999999999999999999999999999999999998876
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=4.6e-17 Score=111.86 Aligned_cols=72 Identities=26% Similarity=0.430 Sum_probs=67.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+......+||++||+.++..+|+.+|..||.|....++.|..++.+||.+||-|.....|++|++.|++..
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 345567899999999999999999999999999999999999999999999999999999999999999986
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.8e-17 Score=117.52 Aligned_cols=92 Identities=21% Similarity=0.467 Sum_probs=88.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--------------
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-------------- 92 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-------------- 92 (128)
|+||||.+.+++.++.|+..|..||+|++|.+-.|+.|++++||+||+|+-++.|..|++.||+.+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhc
Q 040490 93 ------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALD 118 (128)
Q Consensus 93 ------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~ 118 (128)
.+.++||||++|.+.+....|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 56789999999999999999998876
No 19
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=6.2e-17 Score=109.45 Aligned_cols=80 Identities=30% Similarity=0.447 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcccEEEEEe
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHGFGFFTM 104 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~fv~f 104 (128)
.-++||||+|+|++..+.|++.|++||+|.+..++.|+.++++|||+||+|.+.++|.+|++..+-..+||.-.|-...+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 44689999999999999999999999999999999999999999999999999999999999888887888777755444
No 20
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.69 E-value=4.9e-16 Score=117.64 Aligned_cols=94 Identities=19% Similarity=0.108 Sum_probs=80.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc--Ccc----------
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN--RYE---------- 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~---------- 92 (128)
++++|||+|||+++++++|+++|.+||.|.++.++.+ +|+|||+|.+.++|++|+..++ +..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3578999999999999999999999999999988853 5799999999999999998642 211
Q ss_pred -------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHh
Q 040490 93 -------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 93 -------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~ 117 (128)
..+..++|||+|.+.++|.+|+..|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHh
Confidence 2233468999999999999999999
Q ss_pred cCCCccC
Q 040490 118 DGQARIL 124 (128)
Q Consensus 118 ~g~~~~~ 124 (128)
||..+..
T Consensus 155 ng~~i~~ 161 (481)
T TIGR01649 155 NGADIYN 161 (481)
T ss_pred cCCcccC
Confidence 9998753
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.67 E-value=2.4e-15 Score=113.92 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=58.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRY-DVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..+++|||+|||+ .+++++|+++|..||.|..++++.++ +|+|||+|.+.++|..|+..|++..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~ 337 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVK 337 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999999998 69999999999999999999998863 6899999999999999999888865
No 22
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=1.5e-15 Score=86.04 Aligned_cols=63 Identities=38% Similarity=0.605 Sum_probs=59.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 29 l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
|||+|||+++++++|+++|..||.+..+.++.+ .++..+++|||.|.+.++|+.|++.+++..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~ 63 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKK 63 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCE
Confidence 799999999999999999999999999999988 678899999999999999999999999865
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.64 E-value=2.4e-15 Score=114.32 Aligned_cols=96 Identities=28% Similarity=0.423 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc------------CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQA------------GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~------------G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
....++|||||||+.+++++|+++|..+ +.|..+. ..+.+|||||+|.+.++|..||. |++
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4457899999999999999999999975 1233332 23457899999999999999994 433
Q ss_pred cc------------------------------------------------------------------------------
Q 040490 91 YE------------------------------------------------------------------------------ 92 (128)
Q Consensus 91 ~~------------------------------------------------------------------------------ 92 (128)
..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 21
Q ss_pred --------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 --------TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 --------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+|+++|||||+|.+.+.|..|+..|||..+...
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 578899999999999999999999999876543
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.7e-15 Score=112.78 Aligned_cols=102 Identities=23% Similarity=0.426 Sum_probs=94.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc------------
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------------ 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------------ 92 (128)
.+.||||++||+.++.++|.++|+..|+|..+.++.++.++.+|||+||.|.-++++++|+....+..
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 44899999999999999999999999999999999999999999999999999999999999888743
Q ss_pred ----------------------------------------------------------------------cCCcccEEEE
Q 040490 93 ----------------------------------------------------------------------TGCSHGFGFF 102 (128)
Q Consensus 93 ----------------------------------------------------------------------~~~~~~~~fv 102 (128)
.|+-.||+||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEE
Confidence 6777799999
Q ss_pred EeCCHHHHHHHHHHhcCCCccCCC
Q 040490 103 TMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 103 ~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+|....+|..||..+|+..+..+.
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~ 187 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRP 187 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCce
Confidence 999999999999999998876654
No 25
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=2.5e-15 Score=103.75 Aligned_cols=68 Identities=28% Similarity=0.421 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
-+.++||||.|.+.-.|++++.+|..||.+.++.+++.+ .+.+||++||.|.+..+|+.||..||+..
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSq 84 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQ 84 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccc
Confidence 367899999999999999999999999999999999986 58899999999999999999999999976
No 26
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.1e-15 Score=100.75 Aligned_cols=72 Identities=29% Similarity=0.439 Sum_probs=67.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..-++.++|-|.||+.++++.+|+++|.+||.|..+.+.+++.||.++|||||.|.+.++|.+|+..|+|.-
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~g 255 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYG 255 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcc
Confidence 455678999999999999999999999999999999999999999999999999999999999999999864
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=5.3e-15 Score=113.16 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=81.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc---------
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGV-VEISEVI-FYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE--------- 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--------- 92 (128)
.+.++|||+|||+++++++|.+.|.+++. +.++.++ .....++++|||||+|.++++|..|++.|+...
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 45689999999999999999999999863 3333332 333456789999999999999999998775321
Q ss_pred -------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 93 -------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 93 -------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
....++|+||+|.++++|++|+..|||..+.
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~ 295 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELE 295 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 3355789999999999999999999998765
Q ss_pred CC
Q 040490 124 LP 125 (128)
Q Consensus 124 ~~ 125 (128)
..
T Consensus 296 Gr 297 (578)
T TIGR01648 296 GS 297 (578)
T ss_pred CE
Confidence 43
No 28
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.9e-15 Score=93.82 Aligned_cols=70 Identities=21% Similarity=0.366 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...+++||||||+..+++++|.++|.++|+|..|.+-.++.+..+.|||||+|.+.++|+.|++-+++..
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr 102 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR 102 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999876
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.5e-14 Score=105.94 Aligned_cols=98 Identities=27% Similarity=0.445 Sum_probs=89.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc----------
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---------- 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---------- 92 (128)
.++...+||.||+++++...|.++|+.||.|.+|+++.+. ++ ++|| ||+|.+++.|.+|++.+++..
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 4444559999999999999999999999999999999996 44 8999 999999999999999999987
Q ss_pred ------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhc
Q 040490 93 ------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALD 118 (128)
Q Consensus 93 ------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~ 118 (128)
.+++++|+||.|.++++|..|+..|+
T Consensus 150 ~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 150 FERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred ccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 57799999999999999999999999
Q ss_pred CCCcc
Q 040490 119 GQARI 123 (128)
Q Consensus 119 g~~~~ 123 (128)
+....
T Consensus 230 ~~~~~ 234 (369)
T KOG0123|consen 230 GKIFG 234 (369)
T ss_pred CCcCC
Confidence 98764
No 30
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=5.1e-15 Score=107.62 Aligned_cols=68 Identities=28% Similarity=0.381 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+.++||||.|++.+++.+++++|.+||.|.+|.++++. .+.+||||||.|.+.+-|..|++.||+..
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccce
Confidence 347889999999999999999999999999999999995 68999999999999999999999999986
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.55 E-value=3.4e-14 Score=103.49 Aligned_cols=68 Identities=24% Similarity=0.431 Sum_probs=65.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999986
No 32
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=9.6e-14 Score=78.95 Aligned_cols=62 Identities=31% Similarity=0.556 Sum_probs=56.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 040490 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 29 l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 91 (128)
|||+|||+++++++|+++|..+|.|..+.+..++. +..+|+|||+|.+.++|.+|++.+++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 79999999999999999999999999999999876 899999999999999999999988754
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.5e-13 Score=100.80 Aligned_cols=94 Identities=29% Similarity=0.375 Sum_probs=85.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--------------
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-------------- 92 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-------------- 92 (128)
..+||| +++++..|.+.|..+|++.++++.++. | +-|||||.|.++.+|++|+..++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 999999999999999999999999998 6 99999999999999999999998876
Q ss_pred ------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 93 ------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 93 ------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
...+++| ||+|.+.+.|++|+..+||..+...++
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki 145 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKI 145 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCee
Confidence 3338999 999999999999999999987766543
No 34
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.51 E-value=2.9e-14 Score=99.31 Aligned_cols=90 Identities=26% Similarity=0.433 Sum_probs=82.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--------------
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-------------- 92 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-------------- 92 (128)
.++||||||.++++.+|+.+|++||.|.+|.++.+ |+||+.++...++.|++.|++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999876 99999999999999999999876
Q ss_pred ---------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 ---------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ---------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
..--++|+||.|...++|..|++.|||.....
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~g 139 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQG 139 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhccccccccc
Confidence 33457899999999999999999999986644
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.51 E-value=1.4e-14 Score=103.41 Aligned_cols=99 Identities=33% Similarity=0.521 Sum_probs=85.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc------------
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------------ 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------------ 92 (128)
+.+++||++|+|+++++.|++.|.+||++.++.+|+++.+++++||+||+|.+......++..-....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 78999999999999999999999999999999999999999999999999998888777776433322
Q ss_pred --------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHH----hc
Q 040490 93 --------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAA----LD 118 (128)
Q Consensus 93 --------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~----~~ 118 (128)
+.++++|+||.|.+++.+.+++.. ++
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~ 164 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFN 164 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeec
Confidence 789999999999999999887654 45
Q ss_pred CCCcc
Q 040490 119 GQARI 123 (128)
Q Consensus 119 g~~~~ 123 (128)
|+...
T Consensus 165 gk~ve 169 (311)
T KOG4205|consen 165 GKKVE 169 (311)
T ss_pred Cceee
Confidence 55443
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=2.3e-13 Score=104.66 Aligned_cols=76 Identities=13% Similarity=0.343 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEE
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFG 100 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~ 100 (128)
..++|||+|||+++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|..|++.||+.. .|+...++
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45799999999999999999999999999999999999899999999999999999999999999987 34444333
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.8e-13 Score=104.55 Aligned_cols=102 Identities=29% Similarity=0.475 Sum_probs=88.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD---RSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
+++||.||+++++.++++..|.+.|.|.++.+..-+... .+.||+||+|.+.++|..|++.|++..
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999988776554222 245999999999999999999999654
Q ss_pred -------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHh
Q 040490 93 -------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 93 -------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~ 117 (128)
.+.+|||+||.|-++++|.+|+.+|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 4557999999999999999999999
Q ss_pred cCCCccCCCCC
Q 040490 118 DGQARILPHFI 128 (128)
Q Consensus 118 ~g~~~~~~~~~ 128 (128)
.+.++..+++|
T Consensus 676 ~STHlyGRrLV 686 (725)
T KOG0110|consen 676 GSTHLYGRRLV 686 (725)
T ss_pred cccceechhhh
Confidence 99988888875
No 38
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.5e-13 Score=89.37 Aligned_cols=95 Identities=22% Similarity=0.357 Sum_probs=80.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
...++|||||||.++.+.+|+++|-+||.|.+|.+-.. .....||||+|++..+|+.|+..-++..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999876432 2446799999999999999999877665
Q ss_pred -----------------------------------------------------------------cCCcccEEEEEeCCH
Q 040490 93 -----------------------------------------------------------------TGCSHGFGFFTMSDE 107 (128)
Q Consensus 93 -----------------------------------------------------------------~~~~~~~~fv~f~~~ 107 (128)
.-...+++.|.|...
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~ 160 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRK 160 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccceeeeeeeh
Confidence 344567899999999
Q ss_pred HHHHHHHHHhcCCC
Q 040490 108 SKLNDAIAALDGQA 121 (128)
Q Consensus 108 ~~a~~a~~~~~g~~ 121 (128)
++++.|+..|+...
T Consensus 161 eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 161 EDMKYAVRKLDDQK 174 (241)
T ss_pred hhHHHHHHhhcccc
Confidence 99999999987643
No 39
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=3.2e-13 Score=100.90 Aligned_cols=64 Identities=30% Similarity=0.457 Sum_probs=61.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 88 (128)
...+|||.|||++++++.|..+|.+||+|.+..++.++.|+.++|.|||.|.+..+|.+||...
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 3589999999999999999999999999999999999999999999999999999999999866
No 40
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=3.9e-13 Score=93.95 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.++-+||||+-|+.++++..|+..|.+||+|..|.++.+..|++++|||||+|..+.+.+.|.+..++..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 3667999999999999999999999999999999999999999999999999999999999999988877
No 41
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.3e-13 Score=88.68 Aligned_cols=65 Identities=25% Similarity=0.390 Sum_probs=60.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..-.++||||||+..+++.+|+..|..||++..+++...+ .|||||+|++..+|+.|+..|++..
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~ 71 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKD 71 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCcc
Confidence 3457899999999999999999999999999999987754 7999999999999999999999986
No 42
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=3.9e-13 Score=84.32 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=74.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCc
Q 040490 18 VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCS 96 (128)
Q Consensus 18 ~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~ 96 (128)
+.++....++.|||.++..++++++|.+.|..||+|+.+++-+++.|+..+||++|+|.+...|+.|+..+|+.. .++.
T Consensus 64 pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 64 PGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred CCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 345666778999999999999999999999999999999999999999999999999999999999999999886 4555
Q ss_pred ccEEE
Q 040490 97 HGFGF 101 (128)
Q Consensus 97 ~~~~f 101 (128)
..+.|
T Consensus 144 v~VDw 148 (170)
T KOG0130|consen 144 VSVDW 148 (170)
T ss_pred eeEEE
Confidence 44433
No 43
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=5.6e-13 Score=94.21 Aligned_cols=69 Identities=28% Similarity=0.439 Sum_probs=63.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....++|+|+|||+...+.||+.+|.+||.|.++.++.+ .+-+|||+||+|++.++|++|..+||+..
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~ 160 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTV 160 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcce
Confidence 3456789999999999999999999999999999999986 36789999999999999999999999997
No 44
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=8.9e-15 Score=95.81 Aligned_cols=80 Identities=20% Similarity=0.372 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEEE
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGFF 102 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~fv 102 (128)
.++.-|||||||++.|+-+|.-.|++||+|..|.+++|+.||+++||||++|++..++-.|+..|+|.. .||-..+..|
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 567889999999999999999999999999999999999999999999999999999999999999987 5676766666
Q ss_pred E
Q 040490 103 T 103 (128)
Q Consensus 103 ~ 103 (128)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 45
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.44 E-value=7.8e-13 Score=91.87 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.++|||+|||+.+++++|+++|..||.|.++.++.++. .+|||||+|.++++++.|+. |++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~ 66 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGAT 66 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCe
Confidence 57999999999999999999999999999999988753 47899999999999999996 88776
No 46
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.43 E-value=6e-13 Score=99.24 Aligned_cols=65 Identities=37% Similarity=0.679 Sum_probs=62.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
++|||||.+++++.+|+.+|+.||.|..++++.+..||..+||+|++|.+.++|.+|++.||+..
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfe 344 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFE 344 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccce
Confidence 39999999999999999999999999999999998899999999999999999999999999976
No 47
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.1e-12 Score=90.70 Aligned_cols=102 Identities=34% Similarity=0.492 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCC---------C---CCcce--EEEEEeCCHH-HHHHHHHH
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE---------T---DRSTG--FGFVTMSTVE-EAEKVVEM 87 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---------~---~~~~g--~afv~f~~~~-~a~~a~~~ 87 (128)
....++|||+||+.+++++-|..+|...|++..++++++.. + ...+. ..||.+-+.+ +.+...+.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~a 82 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREA 82 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHH
Confidence 45678999999999999999999999999999998877521 0 11111 2333333322 22222222
Q ss_pred hcCc---c---------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 88 FNRY---E---------TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 88 l~~~---~---------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
+... . +++++||+||.|-.+++|++||..|||+=|--
T Consensus 83 F~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~ 131 (321)
T KOG0148|consen 83 FAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR 131 (321)
T ss_pred hccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc
Confidence 2221 1 89999999999999999999999999975543
No 48
>smart00362 RRM_2 RNA recognition motif.
Probab=99.42 E-value=2.3e-12 Score=72.37 Aligned_cols=63 Identities=40% Similarity=0.599 Sum_probs=57.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+|||+|||+.++.++|+++|..+|.+..+.+..++ +.++|++||+|.+.+.|..|++.+++..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~ 63 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTK 63 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcE
Confidence 58999999999999999999999999999888775 6788999999999999999999888654
No 49
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.40 E-value=7.1e-13 Score=88.58 Aligned_cols=87 Identities=22% Similarity=0.276 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccE
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGF 99 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~ 99 (128)
++......|.|-||..-++.++|+.+|++||.|-+|.|..|+.|..++|||||-|....+|+.|++.|++.+ +|+...+
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 445566789999999999999999999999999999999999999999999999999999999999999987 6776665
Q ss_pred EEEEeCCH
Q 040490 100 GFFTMSDE 107 (128)
Q Consensus 100 ~fv~f~~~ 107 (128)
-++.|...
T Consensus 88 q~arygr~ 95 (256)
T KOG4207|consen 88 QMARYGRP 95 (256)
T ss_pred hhhhcCCC
Confidence 55555443
No 50
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.38 E-value=3.4e-12 Score=87.55 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=58.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+.+.+|||+||++.+++++|+++|..+|.|.++.++++. ..+++|||+|.++++++.|+. |++..
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~ 67 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGAT 67 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCe
Confidence 356899999999999999999999999999999999884 445799999999999999995 88876
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.4e-12 Score=75.84 Aligned_cols=90 Identities=17% Similarity=0.308 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcccEE
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHGFG 100 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 100 (128)
.++...+.|||.|||+++|.++..++|.+||.|..|.+--. ...+|-|||.|++..+|.+|++.|.+... ...|-
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl 87 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYL 87 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhccccc--CCceE
Confidence 44566788999999999999999999999999999877544 45588999999999999999999998762 22344
Q ss_pred EEEeCCHHHHHHHHH
Q 040490 101 FFTMSDESKLNDAIA 115 (128)
Q Consensus 101 fv~f~~~~~a~~a~~ 115 (128)
.|.|..++++.+-+.
T Consensus 88 ~vlyyq~~~~~~~~~ 102 (124)
T KOG0114|consen 88 VVLYYQPEDAFKLMD 102 (124)
T ss_pred EEEecCHHHHHHHHH
Confidence 566666666655443
No 52
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=6.4e-12 Score=70.27 Aligned_cols=62 Identities=40% Similarity=0.620 Sum_probs=56.6
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 31 VGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 31 v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
|+|||+.+++++|+++|..+|.+..+.+..++.++.++|+|||.|.+.++|..|++.+++..
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~ 62 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKE 62 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCe
Confidence 57999999999999999999999999999887778899999999999999999999888654
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.36 E-value=5.2e-12 Score=87.59 Aligned_cols=76 Identities=41% Similarity=0.585 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEE
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGF 101 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~f 101 (128)
.++|||+|||+++++++|+++|..||.+..+.+..++.+++++|+|||.|.+++++..|++.+++.. .++......
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 5999999999999999999999999999999999998899999999999999999999999999765 444444433
No 54
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=9e-12 Score=92.61 Aligned_cols=72 Identities=22% Similarity=0.419 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHHHhcCcc-cCCcccE
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTV--EEAEKVVEMFNRYE-TGCSHGF 99 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~-~~~~~~~ 99 (128)
....+||||||++++++++|+..|..||.|..+.++ +.++ ||||||+|... .+..+|+..|++.. .|+...+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 456899999999999999999999999999999998 4566 99999999987 68999999999987 4555443
No 55
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=2.6e-11 Score=68.33 Aligned_cols=64 Identities=44% Similarity=0.655 Sum_probs=58.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+|+|+|||+.+++++|+++|..+|.+..+.+..++.+ .++|++||.|.+.++|..|++.+++..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCe
Confidence 4899999999999999999999999999999887654 778999999999999999999988874
No 56
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.30 E-value=1.4e-11 Score=91.60 Aligned_cols=77 Identities=30% Similarity=0.557 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEEEE
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGFFT 103 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~fv~ 103 (128)
+.+||||+|+++++++|..+|...|.|.+++++.|+.||+++||+|++|.+.+++..|++.|++.. .|+...+.|-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 899999999999999999999999999999999999999999999999999999999999999987 45555555443
No 57
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.7e-12 Score=86.66 Aligned_cols=71 Identities=25% Similarity=0.424 Sum_probs=67.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....++||||+|..++++.-|...|..||.|..|+++.|..++++|||+||+|...++|..|+..|+...
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE 76 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE 76 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999887
No 58
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.26 E-value=9.8e-11 Score=83.50 Aligned_cols=69 Identities=14% Similarity=0.324 Sum_probs=60.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEI--------SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+.....|||+|||.++|.+++.++|.++|.|.. |++.++. .|..+|-|.++|...+++..|++.|++..
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccc
Confidence 445567999999999999999999999997754 5777774 58999999999999999999999999876
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.26 E-value=6.4e-12 Score=93.83 Aligned_cols=103 Identities=23% Similarity=0.367 Sum_probs=92.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--------
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-------- 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-------- 92 (128)
.++.+.+++|+..|....++-+|.++|...|.|.++.++.++.++.++|.+||+|.+.+....|+. |.|..
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 345667899999999999999999999999999999999999999999999999999998888874 66654
Q ss_pred ---------------------------------------------------------------cCCcccEEEEEeCCHHH
Q 040490 93 ---------------------------------------------------------------TGCSHGFGFFTMSDESK 109 (128)
Q Consensus 93 ---------------------------------------------------------------~~~~~~~~fv~f~~~~~ 109 (128)
+|+++||+|++|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 89999999999999999
Q ss_pred HHHHHHHhcCCCccC
Q 040490 110 LNDAIAALDGQARIL 124 (128)
Q Consensus 110 a~~a~~~~~g~~~~~ 124 (128)
|.+|+..|||-.+..
T Consensus 333 ar~a~e~lngfelAG 347 (549)
T KOG0147|consen 333 ARKALEQLNGFELAG 347 (549)
T ss_pred HHHHHHHhccceecC
Confidence 999999999954443
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.25 E-value=1.8e-10 Score=84.59 Aligned_cols=66 Identities=32% Similarity=0.581 Sum_probs=61.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFN-QAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+.+||.|+|+++...+|++++. +.|+|.++.++.| .++++||+|.|+|++++.+++|++.|+.+.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~ 110 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYE 110 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhcc
Confidence 35599999999999999999998 5799999999999 589999999999999999999999999987
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.3e-10 Score=83.80 Aligned_cols=68 Identities=12% Similarity=0.359 Sum_probs=64.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.-.+|||..+.++.++++|+..|+.||+|..|++.+.+..+.++||+|++|.+..+...|+..||-..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFD 276 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD 276 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhh
Confidence 45799999999999999999999999999999999999999999999999999999999999998876
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=6.9e-11 Score=82.02 Aligned_cols=78 Identities=26% Similarity=0.469 Sum_probs=72.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCS 96 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~ 96 (128)
...+.+++|.|||-.||.+..+.+|..+|-.||.|.+.++..|+.|..+|+|+||.|.+..+++.||..||+...|..
T Consensus 278 qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 278 QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhh
Confidence 356678999999999999999999999999999999999999999999999999999999999999999999875543
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.11 E-value=1.8e-09 Score=73.11 Aligned_cols=65 Identities=22% Similarity=0.412 Sum_probs=58.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAH----LFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~----~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+..+|||.||+.-+..++|+. +|+.||.|.+|... .+.+.||.|||.|.+.+.|-.|++.|+|..
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfp 76 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFP 76 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCc
Confidence 334999999999999988887 99999999888655 367899999999999999999999999987
No 64
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.10 E-value=1.1e-09 Score=81.18 Aligned_cols=92 Identities=16% Similarity=0.291 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc----------
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---------- 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---------- 92 (128)
.....-|-+.+|||++|+++|.++|..++ |.. +...+.+++..|-|||+|.+++++++|+++-...+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~--~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IEN--LEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeE--EEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 44556677889999999999999999996 555 44455689999999999999999999998544443
Q ss_pred ---------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHH
Q 040490 93 ---------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIA 115 (128)
Q Consensus 93 ---------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~ 115 (128)
-+|+.+=+||+|.+.+.|++|+.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 56778889999999999999998
Q ss_pred Hh
Q 040490 116 AL 117 (128)
Q Consensus 116 ~~ 117 (128)
.-
T Consensus 164 rh 165 (510)
T KOG4211|consen 164 RH 165 (510)
T ss_pred HH
Confidence 63
No 65
>smart00361 RRM_1 RNA recognition motif.
Probab=99.09 E-value=7.2e-10 Score=63.11 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=45.3
Q ss_pred HHHHHHHhh----ccCCeeEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 40 SEKLAHLFN----QAGVVEISE-VIFYRET--DRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 40 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+++|+++|. +||.+.++. ++.++.+ +.++|++||.|.+.++|..|++.|++..
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~ 61 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY 61 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 567888888 999999985 6676666 8889999999999999999999999875
No 66
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=4.8e-10 Score=84.31 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=67.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..........+||++||...++.++++++..||++....++.+..++-++||||.+|-+...+..|+..|++..
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh
Confidence 33445567899999999999999999999999999999999999889999999999999999999999999876
No 67
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=2.4e-10 Score=77.65 Aligned_cols=93 Identities=23% Similarity=0.477 Sum_probs=80.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--------------
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-------------- 92 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-------------- 92 (128)
..+|||+||+.+.+.++..+|..||.+.++.+. .||+||+|.+..+|..|+..+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999887553 3589999999999999998887764
Q ss_pred -------------------------------------------------cCC------cccEEEEEeCCHHHHHHHHHHh
Q 040490 93 -------------------------------------------------TGC------SHGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 93 -------------------------------------------------~~~------~~~~~fv~f~~~~~a~~a~~~~ 117 (128)
.|+ .++++||+|.+.++|..|+..+
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l 153 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKL 153 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhc
Confidence 233 3789999999999999999999
Q ss_pred cCCCccCCCC
Q 040490 118 DGQARILPHF 127 (128)
Q Consensus 118 ~g~~~~~~~~ 127 (128)
+|..+...++
T Consensus 154 ~~~~~~~~~l 163 (216)
T KOG0106|consen 154 DGKKLNGRRI 163 (216)
T ss_pred cchhhcCcee
Confidence 9988776553
No 68
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.05 E-value=7.6e-10 Score=72.80 Aligned_cols=72 Identities=28% Similarity=0.440 Sum_probs=65.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEI-SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
+.+.+.++||+||.+++++..|.+.|+.||.+.. .++++++.|+.++||+|+.|.+.+.+.+|+..+++...
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 3455689999999999999999999999998865 58899999999999999999999999999999999883
No 69
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.02 E-value=7.4e-09 Score=70.32 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=54.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEE-EecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEV-IFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~-~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....+||||.+||.++...+|..+|..|-.-....+ +.++.....+-++|++|.+.+.|..|+..|||..
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvr 101 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVR 101 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCee
Confidence 445799999999999999999999999743333322 2333222335699999999999999999999986
No 70
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=1.3e-09 Score=80.15 Aligned_cols=74 Identities=28% Similarity=0.302 Sum_probs=63.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEEEEe
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGFFTM 104 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~fv~f 104 (128)
...|||.||+.++|++.|++.|+.||.|..++.++| ||||+|.+.++|.+|++.++++. .|.+..+.+..-
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 467999999999999999999999999999887755 99999999999999999999998 566666655554
Q ss_pred CCH
Q 040490 105 SDE 107 (128)
Q Consensus 105 ~~~ 107 (128)
.+.
T Consensus 331 ~~k 333 (506)
T KOG0117|consen 331 VDK 333 (506)
T ss_pred hhh
Confidence 433
No 71
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.7e-09 Score=77.77 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=67.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..++...|||-.|++.+++++|.-+|+.||.|..|.++++..|+.+-.||||+|.+.++++.|.-+|++..
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL 305 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL 305 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee
Confidence 34567889999999999999999999999999999999999999999999999999999999999999987
No 72
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.96 E-value=6e-09 Score=69.76 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQA-GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETG 94 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 94 (128)
.....-+|+..+|....+.++...|.++ |.+....+-+++.||.++|||||+|++++.|+.|-+.||++...
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 3445668999999999999999999998 67777888899999999999999999999999999999999843
No 73
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.96 E-value=2.4e-09 Score=83.22 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=56.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
++|||||+|+..+++.+|..+|+.||+|.+|.++.. +|||||.+...++|++|+.+|.+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~k 481 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVK 481 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhccc
Confidence 489999999999999999999999999999987765 6799999999999999999999876
No 74
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.91 E-value=5.9e-08 Score=58.44 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=75.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--cCCcccEEEE
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQ--AGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE--TGCSHGFGFF 102 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~~~~~~~fv 102 (128)
+||.+.|+|...+.+.|.+++.. .|....+.++.|..+..+.|||||.|.+++.+.+-.+.+++.. ...+...+=|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999886 3677778999999999999999999999999999999999987 3456778888
Q ss_pred EeCCHHHHHHHHH
Q 040490 103 TMSDESKLNDAIA 115 (128)
Q Consensus 103 ~f~~~~~a~~a~~ 115 (128)
.+...+.-++-++
T Consensus 82 ~yAriQG~~alv~ 94 (97)
T PF04059_consen 82 SYARIQGKDALVE 94 (97)
T ss_pred ehhHhhCHHHHHH
Confidence 8877665444443
No 75
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=2.6e-09 Score=72.22 Aligned_cols=102 Identities=23% Similarity=0.274 Sum_probs=88.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc----------
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---------- 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---------- 92 (128)
....++|||+|+...++++-|.++|-.-|+|..+.+..++. ++.+ ||||.|.++.+..-|++-+++..
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 44568999999999999999999999999999998877753 4555 99999999999999999888876
Q ss_pred -------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 -------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 -------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+|+.+.++|+.+..-.....++....+-.+++++
T Consensus 84 r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 84 RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 7889999999999888888889888887766654
No 76
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.81 E-value=5.9e-08 Score=70.37 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=79.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc------
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------ 92 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------ 92 (128)
++-+...+..|.|.+|-..+++.+|.+.++.||+|..+..+..+ -.+.|+|++.+.|++++..-....
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq 97 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQ 97 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCc
Confidence 44455667889999999999999999999999999888766543 269999999999888876322221
Q ss_pred ---------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHH
Q 040490 93 ---------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIA 115 (128)
Q Consensus 93 ---------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~ 115 (128)
-.+.--.+.|+|++.+.|++|-.
T Consensus 98 ~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred hhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHh
Confidence 23344468999999999999999
Q ss_pred HhcCCCcc
Q 040490 116 ALDGQARI 123 (128)
Q Consensus 116 ~~~g~~~~ 123 (128)
+|||.++.
T Consensus 178 alNGADIY 185 (494)
T KOG1456|consen 178 ALNGADIY 185 (494)
T ss_pred hccccccc
Confidence 99998764
No 77
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.77 E-value=4e-08 Score=53.30 Aligned_cols=45 Identities=33% Similarity=0.574 Sum_probs=38.9
Q ss_pred HHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 43 LAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 43 l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
|.++|++||.|..+.+.... +++|||+|.+.++|..|++.|++..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~ 45 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQ 45 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 67899999999999886653 6899999999999999999999876
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.74 E-value=1.8e-08 Score=72.32 Aligned_cols=62 Identities=34% Similarity=0.576 Sum_probs=58.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 86 (128)
...+|||++||.+++++++++.|.+||.|..+.++.|..+.+++||+||.|.++++++.++.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL 157 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc
Confidence 46699999999999999999999999999999999999999999999999999999988875
No 79
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=7.2e-08 Score=69.11 Aligned_cols=68 Identities=26% Similarity=0.315 Sum_probs=57.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+++...-.+|||++|...+++.+|+++|.+||+|.++.++.. +++|||+|.+.++|+.|..+.-...
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~l 288 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKL 288 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhccee
Confidence 3444455679999999999999999999999999999987765 4599999999999999988666544
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.69 E-value=1.2e-07 Score=70.08 Aligned_cols=71 Identities=23% Similarity=0.406 Sum_probs=59.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCccc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHG 98 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~ 98 (128)
.+..|+|||.|||.+.|...|++-|..+|.+.+..+| .+++++| .|-|.++++|++|+..|++.. .||...
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 4677899999999999999999999999999887774 3567776 788999999999999888875 555544
No 81
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=3.1e-08 Score=76.41 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
.....|+|.|||+.++-.+++.+|..||.+.++.++.-...+.++|||||.|-+++.|.+|++.|.+.- .||..
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrL 685 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRL 685 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhh
Confidence 346789999999999999999999999999999988775667789999999999999999999998543 45544
No 82
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.62 E-value=3.2e-07 Score=63.75 Aligned_cols=79 Identities=27% Similarity=0.379 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEE
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGF 101 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~f 101 (128)
.....+|+|.|||..+.+++|+++|..||.+..+.+..++ ++.+.|.|-|.|...++|.+|++.+++.. +|+...+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3345789999999999999999999999988888777775 78999999999999999999999999976 566655554
Q ss_pred E
Q 040490 102 F 102 (128)
Q Consensus 102 v 102 (128)
+
T Consensus 159 i 159 (243)
T KOG0533|consen 159 I 159 (243)
T ss_pred e
Confidence 4
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.60 E-value=1.3e-07 Score=70.47 Aligned_cols=64 Identities=22% Similarity=0.391 Sum_probs=52.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 88 (128)
...+|||+|||.+++..+|+++|.+||.|....+..-...++..+|+||+|.+..+++.++..-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 3456999999999999999999999999998766553323444489999999999999999854
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=1.2e-07 Score=71.43 Aligned_cols=65 Identities=29% Similarity=0.411 Sum_probs=57.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....+|+|-|||..++.++|+.+|..||+|+.++ .+...+|..||+|.+..+|++|++.|++..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-----~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~ 136 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR-----ETPNKRGIVFVEFYDVRDAERALKALNRRE 136 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhh-----cccccCceEEEEEeehHhHHHHHHHHHHHH
Confidence 34568999999999999999999999999998864 345568999999999999999999999876
No 85
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.56 E-value=3.7e-07 Score=69.58 Aligned_cols=68 Identities=32% Similarity=0.446 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
-++.+||++|...+...+|+.+|.+||.|.-.+++++..+.-.++|+||++.+...|.+||..||...
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE 471 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE 471 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh
Confidence 35789999999999999999999999999999999987777889999999999999999999888765
No 86
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.55 E-value=9.2e-08 Score=67.29 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=58.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+.....+++|||+.+.++..+++..|++||++.++.++.+ |+||.|.-.++|..|++.|++..
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccc
Confidence 3557789999999999999999999999999999998876 99999999999999999999887
No 87
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.49 E-value=2.4e-07 Score=64.18 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=65.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+...+...+||+|+.+.++.+++...|+.||.+..+.+..++..+.++||+|++|.+.+.++.++. |++..
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~ 166 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE 166 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc
Confidence 445677899999999999999999999999999999999998888899999999999999999999 88876
No 88
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.49 E-value=5.4e-07 Score=62.38 Aligned_cols=70 Identities=24% Similarity=0.441 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
.+..+||.|-|..+++++-|-..|.+|-....-++++++.|++++||+||.|.+..++-+|++.|++...
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 4568999999999999999999999998877888999999999999999999999999999999999873
No 89
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.9e-06 Score=64.75 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=51.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecC---CCCCcce---EEEEEeCCHHHHHHHHHHhcCc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR---ETDRSTG---FGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~~g---~afv~f~~~~~a~~a~~~l~~~ 91 (128)
...-.++||||+||++++|+.|...|..||.+..- +.... .-.-++| |+|+.|+++.+....+..+...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~Vd-WP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVD-WPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG 329 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEee-cCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc
Confidence 34557899999999999999999999999986432 22111 1113467 9999999999888777655443
No 90
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.46 E-value=1.5e-06 Score=63.44 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=50.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc---c-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQ---A-GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~---~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.-.|-+.+||+++++.++.++|.. . |....+.++.. ..++.+|-||+.|..+++|+.|+.+-....
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~i 230 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNI 230 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHH
Confidence 445666799999999999999963 2 23344545544 478999999999999999999998655544
No 91
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.45 E-value=8.7e-07 Score=68.85 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccE
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR---ETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGF 99 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~ 99 (128)
+.++.+||+||++.+++..|...|..||++..+++|..+ ...+.+-++||.|-+..++++|++.|++.. .+....+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 456789999999999999999999999999999988865 223456689999999999999999999987 3445555
Q ss_pred EEE
Q 040490 100 GFF 102 (128)
Q Consensus 100 ~fv 102 (128)
+|-
T Consensus 252 gWg 254 (877)
T KOG0151|consen 252 GWG 254 (877)
T ss_pred ccc
Confidence 543
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.44 E-value=3.4e-06 Score=61.95 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=84.2
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc------------
Q 040490 26 DAKLFVGNLRYD-VDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------------ 92 (128)
Q Consensus 26 ~~~l~v~nL~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------------ 92 (128)
.+.|.|.||..+ +|.+.|..+|..||.|.+++++..+ +--|+|.|.+...|..|++.|++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678889999666 8999999999999999999999875 2469999999999999999999987
Q ss_pred ----------------------------------------------------------------------------cCCc
Q 040490 93 ----------------------------------------------------------------------------TGCS 96 (128)
Q Consensus 93 ----------------------------------------------------------------------------~~~~ 96 (128)
-++.
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd 451 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD 451 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC
Confidence 5567
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 97 HGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 97 ~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+.++.+++.+.++|-.|+-.++++++.-.|
T Consensus 452 ~kmal~q~~sveeA~~ali~~hnh~lgen~ 481 (492)
T KOG1190|consen 452 RKMALPQLESVEEAIQALIDLHNHYLGENH 481 (492)
T ss_pred cceeecccCChhHhhhhccccccccCCCCc
Confidence 889999999999999999999988776553
No 93
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.34 E-value=8.1e-06 Score=61.16 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=51.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEI-SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 89 (128)
....|-+.+||+.+++++|.++|.-+-.+.. |.++.+ ..++++|-|||+|++.+.|+.|+..-.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~rhr 166 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGRHR 166 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHHHH
Confidence 4467888999999999999999998754444 444444 467799999999999999999987443
No 94
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.25 E-value=7.1e-07 Score=64.41 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=59.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAG--VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.-++|||||-|++|+++|.+.+.+.| .+.++++..++.++.++|||++...+..+.+..++.|-...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~ 148 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT 148 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce
Confidence 35799999999999999999999877 67788999999999999999999999999999888665554
No 95
>smart00361 RRM_1 RNA recognition motif.
Probab=98.19 E-value=2.1e-06 Score=48.68 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.0
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++|++||+|.+.++|++|+..|||+.+..+.
T Consensus 34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 34 NHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 889999999999999999999999998876543
No 96
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.17 E-value=8.4e-06 Score=58.90 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=70.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 040490 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEI--------SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88 (128)
Q Consensus 17 ~~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 88 (128)
...+.......+|||-+||..+++.++.++|.++|.|.. |.+-+++.|++.+|-|.|.|.+...|+.|+..+
T Consensus 57 ~~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ 136 (351)
T KOG1995|consen 57 ASSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWF 136 (351)
T ss_pred cCccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhh
Confidence 344455677789999999999999999999999987743 567788899999999999999999999999998
Q ss_pred cCcc-cCCcccEEEEE
Q 040490 89 NRYE-TGCSHGFGFFT 103 (128)
Q Consensus 89 ~~~~-~~~~~~~~fv~ 103 (128)
++.. .+....+.+++
T Consensus 137 agkdf~gn~ikvs~a~ 152 (351)
T KOG1995|consen 137 AGKDFCGNTIKVSLAE 152 (351)
T ss_pred ccccccCCCchhhhhh
Confidence 8876 34344444443
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.14 E-value=4.8e-06 Score=61.21 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=46.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 83 (128)
.+++.|.++|||++++|+++..++..||.|..+.+...+. .||++|.++++|-.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvt 79 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVT 79 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhh
Confidence 3678899999999999999999999999999887765532 69999999888765
No 98
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.98 E-value=0.00022 Score=52.23 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=58.0
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYD-VDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....+++.+.|.+|... ++.+.|..+|..||.|..|++|..+ .|-|.|++.+..+.++|+..|++..
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~ 349 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIP 349 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCc
Confidence 34456789999999887 5557788999999999999999875 5789999999999999999999987
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.92 E-value=4.7e-05 Score=46.64 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=38.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 91 (128)
++.|.+.+++..++.++|++.|..+|.|..|.+..... -|+|-|.+.++|+.|+..+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 35788889999999999999999999998887755422 6999999999999999877666
No 100
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.86 E-value=0.00023 Score=47.57 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 040490 12 FGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 12 ~~~~~~~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 91 (128)
.+.+....++......+|.|.+||++.+..+|+++..+-|.++...+.++- .+.|+|-..++.+-|+++|...
T Consensus 101 gg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 101 GGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred CCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ceeeeeeehhhHHHHHHhhccc
Confidence 334445556666778899999999999999999999999999988887763 7999999999999999999887
Q ss_pred c
Q 040490 92 E 92 (128)
Q Consensus 92 ~ 92 (128)
.
T Consensus 174 ~ 174 (241)
T KOG0105|consen 174 K 174 (241)
T ss_pred c
Confidence 6
No 101
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=1.5e-05 Score=55.05 Aligned_cols=30 Identities=40% Similarity=0.604 Sum_probs=28.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQAR 122 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~ 122 (128)
+|.++||+||.|.++++|.+||..|||+.+
T Consensus 227 TG~~kGFAFVtF~sRddA~rAI~~LnG~gy 256 (270)
T KOG0122|consen 227 TGLSKGFAFVTFESRDDAARAIADLNGYGY 256 (270)
T ss_pred cCcccceEEEEEecHHHHHHHHHHccCccc
Confidence 999999999999999999999999999743
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.85 E-value=2.4e-05 Score=59.47 Aligned_cols=99 Identities=25% Similarity=0.469 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc-----------C-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQA-----------G-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~-----------G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
.....+++|+++|+.++++....+|..- | .+..+++-.. +.|+|++|.+.+.|..++. +++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhc-ccc
Confidence 3456899999999999999999888753 2 2344444333 4599999999999988875 333
Q ss_pred -----cc-------------------------------------------------------------------------
Q 040490 91 -----YE------------------------------------------------------------------------- 92 (128)
Q Consensus 91 -----~~------------------------------------------------------------------------- 92 (128)
.+
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d 324 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD 324 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc
Confidence 22
Q ss_pred --cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCCCC
Q 040490 93 --TGCSHGFGFFTMSDESKLNDAIAALDGQARILPHFI 128 (128)
Q Consensus 93 --~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~~ 128 (128)
+|-+++|+|++|.++.....|+..|||..+...++|
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 688999999999999999999999999999887764
No 103
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.79 E-value=2.9e-06 Score=67.06 Aligned_cols=96 Identities=22% Similarity=0.351 Sum_probs=81.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
.+.+++||+||+..+.+++|...|..+|.+..+++.....+++.+|+||+.|..+.++.+|+.......
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~ 744 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGP 744 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCC
Confidence 345789999999999999999999999988887776555778999999999999999999987555443
Q ss_pred ----------------------------cCCcccEEEEEeCCHHHHHHHHHHhcC
Q 040490 93 ----------------------------TGCSHGFGFFTMSDESKLNDAIAALDG 119 (128)
Q Consensus 93 ----------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g 119 (128)
.|+++|.++|.|.+..++.+++..++.
T Consensus 745 pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 745 PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchh
Confidence 788999999999999999888766543
No 104
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.73 E-value=3.7e-05 Score=49.72 Aligned_cols=33 Identities=39% Similarity=0.608 Sum_probs=29.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..||+..+...
T Consensus 72 tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr 104 (144)
T PLN03134 72 TGRSRGFGFVNFNDEGAATAAISEMDGKELNGR 104 (144)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 688999999999999999999999999766543
No 105
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.69 E-value=5.8e-05 Score=51.72 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=52.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....++||.||.+++++++|+.+|..|.....+++. . ..|.. .||++|++.+.|..|+..|+|..
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~-~~g~~--vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-A-RGGMP--VAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-c-CCCcc--eEeecHHHHHHHHHHHHHhhcce
Confidence 4456789999999999999999999999654444432 2 23333 79999999999999999998875
No 106
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.68 E-value=4.1e-05 Score=42.59 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=28.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.++.++++||+|.++++|++|+..++|..+..
T Consensus 35 ~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 35 SGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp TSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 57899999999999999999999999976543
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00024 Score=53.77 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=59.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFN-QAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 86 (128)
+.-++.+|||||+||.-++.++|-.+++ -||.|..+.+-+|+.=+.++|-+=|+|.+.++--+||.
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 3456678999999999999999999999 59999999999998788899999999999999999986
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.0003 Score=53.97 Aligned_cols=84 Identities=23% Similarity=0.251 Sum_probs=66.1
Q ss_pred CCeEEEcCCCCCCCH--H----HHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcccE
Q 040490 26 DAKLFVGNLRYDVDS--E----KLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHGF 99 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~--~----~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 99 (128)
...|.|.|+|.--.. + -|..+|+++|++....++.+..++ .+||.|++|.+..+|+.|++.++|...-+...|
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 467889999875443 2 345788999999998888886555 999999999999999999999999986666666
Q ss_pred EEEEeCCHHHH
Q 040490 100 GFFTMSDESKL 110 (128)
Q Consensus 100 ~fv~f~~~~~a 110 (128)
..-.|.+.+..
T Consensus 137 ~v~~f~d~eky 147 (698)
T KOG2314|consen 137 FVRLFKDFEKY 147 (698)
T ss_pred EeehhhhHHHh
Confidence 65666665443
No 109
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.63 E-value=0.00022 Score=38.19 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=39.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 85 (128)
+.|-|.+.+++..+. +..+|..+|+|..+.+... +-..++.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 456788888776644 5558889999999876522 238999999999999885
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.59 E-value=0.00076 Score=49.69 Aligned_cols=91 Identities=13% Similarity=0.221 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCccc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAG-VVEI--SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHG 98 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G-~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 98 (128)
..+...+|-+.+||++.+.++|.++|..|- .|.. ++++.+ ..|++.|-|||+|.+.++|..|..+.++... +.|
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m-k~R- 352 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLM-KSR- 352 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhc-ccc-
Confidence 334466788999999999999999999885 4444 677776 5799999999999999999999988877653 333
Q ss_pred EEEEEeCCHHHHHHHHH
Q 040490 99 FGFFTMSDESKLNDAIA 115 (128)
Q Consensus 99 ~~fv~f~~~~~a~~a~~ 115 (128)
|.=|.-.+.++..++|.
T Consensus 353 YiEvfp~S~eeln~vL~ 369 (508)
T KOG1365|consen 353 YIEVFPCSVEELNEVLS 369 (508)
T ss_pred eEEEeeccHHHHHHHHh
Confidence 33344456666666654
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.57 E-value=0.00039 Score=47.55 Aligned_cols=65 Identities=25% Similarity=0.386 Sum_probs=56.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.++...+|+.|||.+++.+.+..+|..|.....+.++... .+.|||+|.+...+..|...+++..
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~ 207 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFK 207 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccce
Confidence 4567789999999999999999999999988888887754 5789999999999999988888765
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.55 E-value=0.00076 Score=53.07 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=55.6
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 24 PEDA-KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 24 ~~~~-~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
..++ .|-+.|+|++++.++|.++|..|-.+-.-.+++..+.++.+|-+.|.|++.+.|.+|...+++...
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i 934 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKI 934 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcc
Confidence 3445 677889999999999999999997554433444446788999999999999999999888877654
No 113
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=97.47 E-value=0.00022 Score=48.41 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=31.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+..++||+||.|....+|+.|+.+|+|..+...-
T Consensus 51 Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 51 TRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred cccccceeEEEeeecchHHHHHHhhcceeeccce
Confidence 8999999999999999999999999998876553
No 114
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.46 E-value=4.1e-05 Score=61.13 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=82.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc----------
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---------- 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---------- 92 (128)
...+.+||+|||+..+++.+|+..|..+|.+.++.+-..+....+. |+|+.|-+...+..++..+.+..
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa-~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESA-YAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccc-hhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 4567899999999999999999999999999888775553222233 89999998888888877666654
Q ss_pred ---------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 ---------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ---------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
.-..--|+++.|.+...+++|+..|.|..+-.|.
T Consensus 448 G~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 2334558999999999999999999998776553
No 115
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.44 E-value=0.00027 Score=49.22 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=47.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC--------CCcce----EEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET--------DRSTG----FGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--------~~~~g----~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..-.||++++|+.++..-|+++|..||.|-.+.+.....+ +.++. -++|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999988877654333 11111 14455555555555555555555
Q ss_pred c
Q 040490 93 T 93 (128)
Q Consensus 93 ~ 93 (128)
.
T Consensus 153 I 153 (278)
T KOG3152|consen 153 I 153 (278)
T ss_pred c
Confidence 3
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.39 E-value=0.0002 Score=38.44 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 97 HGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 97 ~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++||+|.+.++|+.|++.|||..+...
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 59999999999999999999999876543
No 117
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.38 E-value=0.00028 Score=49.19 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=29.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
+|++++|+||.|.+..++..|++.|+|++..-
T Consensus 228 TgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 228 TGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred ccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 89999999999999999999999999987643
No 118
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.31 E-value=0.00019 Score=51.41 Aligned_cols=63 Identities=21% Similarity=0.389 Sum_probs=57.4
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 040490 25 EDAKLF-VGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87 (128)
Q Consensus 25 ~~~~l~-v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 87 (128)
...++| |++|+.++++++|+..|..+|.|..+.+..++.++..+|++++.|........++..
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 345666 999999999999999999999999999999999999999999999999998888774
No 119
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.30 E-value=0.0016 Score=38.07 Aligned_cols=56 Identities=21% Similarity=0.295 Sum_probs=38.0
Q ss_pred CeEEEcCCCCCCCHHHHH----HHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 27 AKLFVGNLRYDVDSEKLA----HLFNQAG-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~----~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..|+|.|||-+.+...++ .++..+| .+..+. .+-|++-|.+.+.|.+|.+.|++..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEd 63 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGED 63 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccc
Confidence 358999999999987765 4455675 554441 2469999999999999999999987
No 120
>smart00360 RRM RNA recognition motif.
Probab=97.28 E-value=0.00049 Score=37.51 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=27.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++++||+|.+.++|..|+..+++..+..
T Consensus 34 ~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 34 TGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 46778999999999999999999999766543
No 121
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.27 E-value=0.0028 Score=36.97 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=42.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
......+| ..|.++-..+|.++|..||.| .|..+-+- -|||...+.+.+..++..+..
T Consensus 7 ~RdHVFhl-tFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHL-TFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEE-E--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEE-eCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34455666 599999999999999999987 45555553 599999999999999987754
No 122
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.25 E-value=0.00039 Score=47.66 Aligned_cols=64 Identities=27% Similarity=0.404 Sum_probs=53.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......+.+.|.+++..+...+|.+.|..+|.+..... .++++||.|....++.+|+..+++..
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchh
Confidence 34566788999999999999999999999998733322 35689999999999999999999876
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.14 E-value=0.00072 Score=54.34 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=65.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcccEEE
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHGFGF 101 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~f 101 (128)
.....+.+|+++|.+++....+...|..||.|..|.+-.. .-|+++.|.+...++.|++.|.+...|.+..--.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4556788999999999999999999999999988765332 3499999999999999999999999666554455
Q ss_pred EEeCCHHH
Q 040490 102 FTMSDESK 109 (128)
Q Consensus 102 v~f~~~~~ 109 (128)
|.|....-
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 55544433
No 124
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.13 E-value=0.00045 Score=38.59 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=27.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.++.++++||+|.+.++|.+|+..++|..+...
T Consensus 35 ~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 35 DGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp TSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 367899999999999999999999887665443
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.11 E-value=0.00018 Score=53.52 Aligned_cols=60 Identities=25% Similarity=0.450 Sum_probs=45.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..+|++||.+..+..+++.+|...-....-.++. ..||+|+.+.+..++.++++.+++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~ 61 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKV 61 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhh
Confidence 3689999999999999999997641111111221 25799999999999999999888875
No 126
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=96.95 E-value=0.00054 Score=45.31 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=28.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.-.+.+|+||+|.++.+|+.|+..|+|+.+-.
T Consensus 43 ArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG 74 (195)
T KOG0107|consen 43 ARNPPGFAFVEFEDPRDAEDAVRYLDGKDICG 74 (195)
T ss_pred eecCCCceEEeccCcccHHHHHhhcCCccccC
Confidence 45789999999999999999999999987643
No 127
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00056 Score=46.93 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=38.6
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 71 GFVTMSTVEEAEKVVEMFNRYETGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 71 afv~f~~~~~a~~a~~~l~~~~~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
|||-|.+-.+.+.. -...+.++|+|+||+|...++|.+||..||+..+..+.
T Consensus 30 AFIPFGDI~dIqiP----lDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grt 81 (298)
T KOG0111|consen 30 AFIPFGDIKDIQIP----LDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRT 81 (298)
T ss_pred ccccccchhhcccc----cchhcccccceeEEEeeccchhHHHhhcCchhhhccee
Confidence 56666554332222 12338899999999999999999999999998877654
No 128
>smart00362 RRM_2 RNA recognition motif.
Probab=96.83 E-value=0.0018 Score=35.38 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=26.2
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
+.+++++||+|.+.++|++|+..++|..+.
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 557899999999999999999999986553
No 129
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=96.78 E-value=0.001 Score=45.94 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=23.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHh
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~ 117 (128)
++|++|||||+|.+.+.|++|.+..
T Consensus 50 t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 50 TGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred CccccceeeEEeecHHHHHHHhcCC
Confidence 8999999999999999999998864
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=96.77 E-value=0.0016 Score=44.13 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=28.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQAR 122 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~ 122 (128)
+|.+++||||+|.+++.|.-|-..||++.+
T Consensus 88 TGNSKgYAFVEFEs~eVA~IaAETMNNYLl 117 (214)
T KOG4208|consen 88 TGNSKGYAFVEFESEEVAKIAAETMNNYLL 117 (214)
T ss_pred cCCcCceEEEEeccHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999644
No 131
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.75 E-value=0.0052 Score=44.77 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=52.5
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHhhccCCeeEEEEEecCCC-CCcce--EEEEEeCCHHHHHHHHHHhcCcc-cCC
Q 040490 26 DAKLFVGNLRYDVDSEK----L--AHLFNQAGVVEISEVIFYRET-DRSTG--FGFVTMSTVEEAEKVVEMFNRYE-TGC 95 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~----l--~~~f~~~G~i~~~~~~~~~~~-~~~~g--~afv~f~~~~~a~~a~~~l~~~~-~~~ 95 (128)
..-+||-+||+.+..++ | .++|.+||.|..|.+-..-.+ ...-+ -.||+|.+.++|.+|+...++.. +||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35688889988766655 2 378999999988865443211 11112 25999999999999999999986 566
Q ss_pred cccEE
Q 040490 96 SHGFG 100 (128)
Q Consensus 96 ~~~~~ 100 (128)
.....
T Consensus 194 ~lkat 198 (480)
T COG5175 194 VLKAT 198 (480)
T ss_pred eEeee
Confidence 55443
No 132
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=96.75 E-value=0.001 Score=48.00 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=30.7
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
...++|||||+|++.++|++|-..|||..+..+++
T Consensus 132 ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 132 ERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 45589999999999999999999999988776653
No 133
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.71 E-value=0.0035 Score=46.83 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=55.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec---CCCC--C--------cceEEEEEeCCHHHHHHHHHHhc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY---RETD--R--------STGFGFVTMSTVEEAEKVVEMFN 89 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~~--~--------~~g~afv~f~~~~~a~~a~~~l~ 89 (128)
+...++|.+-|||.+-.-+.|.++|..+|.|..|.+... +.+. . .+-+|+|+|...+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 357889999999999999999999999999999988765 3222 1 24479999999999999988775
Q ss_pred Cc
Q 040490 90 RY 91 (128)
Q Consensus 90 ~~ 91 (128)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 44
No 134
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.69 E-value=0.0017 Score=46.55 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc------------
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------------ 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------------ 92 (128)
..++.|++++.+.+.+.+...++..+|......+........++|++++.|...+.+..++.......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57889999999999999888888898877666555555677889999999999999999988554322
Q ss_pred --------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHH
Q 040490 93 --------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAA 116 (128)
Q Consensus 93 --------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~ 116 (128)
++.+.+++++.|........++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 788888999999888888888775
Q ss_pred hcCCCccCC
Q 040490 117 LDGQARILP 125 (128)
Q Consensus 117 ~~g~~~~~~ 125 (128)
..+.+..+
T Consensus 247 -~~~~~~~~ 254 (285)
T KOG4210|consen 247 -QTRSIGGR 254 (285)
T ss_pred -ccCcccCc
Confidence 55554443
No 135
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.58 E-value=0.0087 Score=36.31 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=41.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecC-------CCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR-------ETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...-|.|-+.|+. ....+.+.|.+||.|.+..-.... ..........+.|.++.+|.+||. -||..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i 77 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTI 77 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeE
Confidence 4456888899888 567788899999998765311000 011223488999999999999998 45544
No 136
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.58 E-value=0.0066 Score=47.13 Aligned_cols=93 Identities=20% Similarity=0.206 Sum_probs=69.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC-Cc
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQA-GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETG-CS 96 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-~~ 96 (128)
++.....+..|+|.||-.-.|.-+|+.++..- |.|... +| .+.+.+|||.|.+.+.|-.....||+...- ..
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-----DkIKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-----DKIKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-----HHhhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 44556678899999999999999999999965 455444 22 344668999999999999999999998732 22
Q ss_pred ccEEEEEeCCHHHHHHHHHHh
Q 040490 97 HGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 97 ~~~~fv~f~~~~~a~~a~~~~ 117 (128)
-.+--+.|.+.++..+.+..|
T Consensus 511 PK~L~adf~~~deld~hr~~l 531 (718)
T KOG2416|consen 511 PKHLIADFVRADELDKHRNGL 531 (718)
T ss_pred CceeEeeecchhHHHHHhccc
Confidence 334447788888877665554
No 137
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=96.56 E-value=0.0026 Score=48.06 Aligned_cols=35 Identities=34% Similarity=0.516 Sum_probs=32.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
+|+.+||+|++|.+.++|+.|++.|||+.+..+++
T Consensus 56 tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 56 TGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred CCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 99999999999999999999999999998876653
No 138
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.55 E-value=0.033 Score=30.75 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=44.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQA---GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 88 (128)
....|+|.++ .+++.++|+.+|..| .....+.++-|. -|-|.|.+...|.+|+..|
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4467899998 457889999999988 234677787775 4889999999999999764
No 139
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=96.35 E-value=0.0093 Score=38.07 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+|..+||+.|+|.+.++|++|+.++||..+..-
T Consensus 110 tGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 110 TGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred cccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 889999999999999999999999999877643
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.26 E-value=0.016 Score=45.97 Aligned_cols=63 Identities=19% Similarity=0.055 Sum_probs=51.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEI-SEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 86 (128)
...+..|||..||..+++..+.++|...-.|.+ |.+... -+++.++-|||.|..+.++..|..
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~ 494 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASS 494 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-Ccccccchhhheeccccccchhhh
Confidence 456789999999999999999999998766666 555555 478889999999999877776655
No 141
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=96.08 E-value=0.025 Score=35.85 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=29.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+..+.||+||.|-++++|+.|++.++|..+.-+
T Consensus 74 kktpCGFCFVeyy~~~dA~~AlryisgtrLddr 106 (153)
T KOG0121|consen 74 KKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR 106 (153)
T ss_pred CcCccceEEEEEecchhHHHHHHHhccCccccc
Confidence 677899999999999999999999999766543
No 142
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.00 E-value=0.012 Score=32.10 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=25.6
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 95 CSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 95 ~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
+.++++||+|.+.++|..|+..+++..+.
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~~~~ 66 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGKELG 66 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 56899999999999999999999987543
No 143
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.86 E-value=0.013 Score=41.10 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=54.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
..|||.||+.-++.+.+...|..||++..-.+..| ..+++.+-++|.|.....+.+|++.+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhcc
Confidence 67999999999999999999999999987666666 4578888999999999999999987743
No 144
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.70 E-value=0.043 Score=36.68 Aligned_cols=71 Identities=8% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCe---eEEEEEecCCC-C-CcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQ-AGVV---EISEVIFYRET-D-RSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~-~G~i---~~~~~~~~~~~-~-~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......+|-|.+||+.++++++.+.+.. ++.- ....-.....+ . ....-||+.|.+.++.......+++..
T Consensus 3 ~~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 3 KEKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp ------EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred CcccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 3455678999999999999999887776 5544 23321122111 1 124459999999999999999998865
No 145
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=95.67 E-value=0.015 Score=39.99 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=30.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++++||.|.+.+++..|+..++|..+....
T Consensus 153 ~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 153 TGKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred cCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 6899999999999999999999999987665443
No 146
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.57 E-value=0.019 Score=40.55 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=27.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
.+..++|+||+|.++++|+.||. |||..+....
T Consensus 39 d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~ 71 (260)
T PLN03120 39 ENERSQIAYVTFKDPQGAETALL-LSGATIVDQS 71 (260)
T ss_pred cCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCce
Confidence 33468999999999999999995 9998776543
No 147
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=95.46 E-value=0.016 Score=41.58 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=31.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
+|+++||+||+|.+..++.+|.+..+|..|....+
T Consensus 139 TgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 139 TGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred cCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 99999999999999999999999999987765443
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.37 E-value=0.0081 Score=48.30 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=57.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...++|.|.|+..|.+.++.++...|.+.+..++..+ .++++|.+++.|.++.++.+++.......
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~ 801 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAG 801 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhh
Confidence 3578999999999999999999999999998877775 79999999999999999888876555443
No 149
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.24 E-value=0.19 Score=32.51 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=50.5
Q ss_pred CCCCCCeEEEcCCCCCCCH----HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDS----EKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSH 97 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 97 (128)
..++-.+|-|.=|..++.. ..+...+..||+|.++.+.- +.-|.|.|.+-.+|-.|+..++....|...
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 3556677878766555443 34455677899999885542 336999999999999999988876555444
Q ss_pred cEE
Q 040490 98 GFG 100 (128)
Q Consensus 98 ~~~ 100 (128)
.|.
T Consensus 155 qCs 157 (166)
T PF15023_consen 155 QCS 157 (166)
T ss_pred Eee
Confidence 444
No 150
>PLN03213 repressor of silencing 3; Provisional
Probab=94.77 E-value=0.035 Score=42.62 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=27.3
Q ss_pred ccEEEEEeCCH--HHHHHHHHHhcCCCccCCCC
Q 040490 97 HGFGFFTMSDE--SKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 97 ~~~~fv~f~~~--~~a~~a~~~~~g~~~~~~~~ 127 (128)
|||+||.|.+. .++.+||..|||..+..+.+
T Consensus 48 RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 48 RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 99999999987 68999999999998876653
No 151
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=94.69 E-value=0.068 Score=32.22 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=28.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
++...|||||.|.+++.+.+-.+.++|+.+.
T Consensus 41 ~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 41 NKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 6788999999999999999999999999765
No 152
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.66 E-value=0.12 Score=37.85 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=52.9
Q ss_pred CCCCCCCCCeEEEcCCC----CCCC-------HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 040490 19 DYSEPPEDAKLFVGNLR----YDVD-------SEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~----~~~~-------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 87 (128)
........++|.+.|+= .+.+ .++|++-..+||.+..+.+. + ..+.|.+-|.|.+.+.|..|++.
T Consensus 258 ~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~ 333 (382)
T KOG1548|consen 258 DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQT 333 (382)
T ss_pred ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHH
Confidence 34455667899998862 1333 24566778899999888654 2 24578999999999999999999
Q ss_pred hcCcc
Q 040490 88 FNRYE 92 (128)
Q Consensus 88 l~~~~ 92 (128)
|+|-.
T Consensus 334 m~GR~ 338 (382)
T KOG1548|consen 334 MDGRW 338 (382)
T ss_pred hcCee
Confidence 99987
No 153
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.48 E-value=0.044 Score=33.48 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=28.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
+..-+|.+||.|.+..+|.+|+..|+|.....
T Consensus 53 ~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 53 TKETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred ccCcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 56678999999999999999999999976654
No 154
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.29 E-value=0.24 Score=38.40 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=48.7
Q ss_pred cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc--CCcccEEEEEeCCHHHHHHHHHHhc
Q 040490 50 AGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET--GCSHGFGFFTMSDESKLNDAIAALD 118 (128)
Q Consensus 50 ~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~~~~~~~fv~f~~~~~a~~a~~~~~ 118 (128)
.|.=..+.+..|-.+..+.|||||.|.+.+++..+.+.++++.. -.+...+=++|...+.-++-+..+.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFq 483 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQ 483 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhh
Confidence 34444567777877888999999999999999999999999872 2255555566655544444444333
No 155
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.20 E-value=0.042 Score=38.55 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=44.1
Q ss_pred HHHHHhh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEEEEeCC
Q 040490 42 KLAHLFN-QAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGFFTMSD 106 (128)
Q Consensus 42 ~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~fv~f~~ 106 (128)
++...+. +||+|.++++..+ .....+|-++|.|..+++|++|+..|++-. .|++...-|+--.+
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 3333444 7999988765543 234558889999999999999999999976 44444444443333
No 156
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.96 E-value=0.87 Score=28.10 Aligned_cols=64 Identities=16% Similarity=0.049 Sum_probs=45.3
Q ss_pred CeEEEcCCCCC-CCHHHHHHHhhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 27 AKLFVGNLRYD-VDSEKLAHLFNQA-GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 27 ~~l~v~nL~~~-~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..+.+=-.|+. ++...|..+...+ ..|..++++++. ..++-.+.+.|.+..+|....+.+||..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~ 78 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKP 78 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCc
Confidence 33444344444 5555666555555 466677887764 3467789999999999999999999987
No 157
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.86 E-value=0.092 Score=39.15 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=47.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHH
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET---DRSTGFGFVTMSTVEEAEKVVE 86 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~ 86 (128)
.|-|.||.+.++.++++.+|..+|.|.++.++..... ....-.|||-|.+.+.+..|-.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh 70 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH 70 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh
Confidence 7889999999999999999999999999888764322 1233479999999888777744
No 158
>PLN03121 nucleic acid binding protein; Provisional
Probab=93.62 E-value=0.092 Score=36.75 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=26.7
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.++..+++||+|.+++.++.|+ .|+|..+...
T Consensus 40 D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~ 71 (243)
T PLN03121 40 SGEYACTAYVTFKDAYALETAV-LLSGATIVDQ 71 (243)
T ss_pred CCCcceEEEEEECCHHHHHHHH-hcCCCeeCCc
Confidence 5667789999999999999999 5999876543
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.57 E-value=0.095 Score=40.82 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=32.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
.|..+||.|++|.+..+|+.|++.+||+.+..+|
T Consensus 101 ~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 101 EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred cCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 6779999999999999999999999999998877
No 160
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.34 E-value=0.11 Score=41.00 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=52.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+..++.-++||+|+...+..+-++.++..+|.|..+.... |+|..|..+....+|+..++...
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~ 97 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELN 97 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccC
Confidence 34455677999999999999999999999999886654322 89999999999999998777655
No 161
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.02 E-value=0.61 Score=36.49 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=50.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQ--AGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 91 (128)
......|.|++..||..+..++++.+|+. +-.+.+|.+..+. -=||+|++..+|+.|.+.|...
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylree 235 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREE 235 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHH
Confidence 33455678889999999999999999986 5677777765543 3689999999999998766543
No 162
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.01 E-value=0.099 Score=38.05 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=49.7
Q ss_pred CCeEEEcCCCCCCCHHHHH---HHhhccCCeeEEEEEecCC--CC-CcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 26 DAKLFVGNLRYDVDSEKLA---HLFNQAGVVEISEVIFYRE--TD-RSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~--~~-~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..-+||-+|+....++.+. +.|.+||.|..+....++. ++ -...-++|+|...++|..||..+++..
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~ 149 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV 149 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH
Confidence 3557888898887666554 5688889998887766552 11 122349999999999999999888876
No 163
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=92.20 E-value=1.2 Score=32.14 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=35.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEEecCCCCCcceEEEEEeCCH
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVV-EISEVIFYRETDRSTGFGFVTMSTV 78 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~afv~f~~~ 78 (128)
...-|+++||+.++.-.+|+..+.+.+-+ .++.+ .-++|-||++|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 34569999999999999999999988732 33322 23466799999764
No 164
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=1.1 Score=33.74 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=56.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcccEEEEE
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAG-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHGFGFFT 103 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~fv~ 103 (128)
-.+.|-|.++|.....++|...|..|+ ...+|+++-+. ++|..|.+...|..||.. ++.||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~----------kh~~lK 452 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL----------KHDWLK 452 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc----------cCceEE
Confidence 356788899999999999999999985 55788888875 799999999999999872 345566
Q ss_pred eCCHHHHHHH
Q 040490 104 MSDESKLNDA 113 (128)
Q Consensus 104 f~~~~~a~~a 113 (128)
+....++.++
T Consensus 453 iRpLaqatk~ 462 (528)
T KOG4483|consen 453 IRPLAQATKV 462 (528)
T ss_pred eeehhhchhH
Confidence 6555555544
No 165
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=92.10 E-value=0.37 Score=28.34 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=24.0
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 96 SHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 96 ~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
..+.+.+.|.+.+.|++|.+.|+|.+...+++
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 45789999999999999999999988877654
No 166
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.31 E-value=0.88 Score=32.93 Aligned_cols=52 Identities=19% Similarity=0.060 Sum_probs=38.6
Q ss_pred HHHHHHhhccCCeeEEEEEecCCCCCcc-eEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 41 EKLAHLFNQAGVVEISEVIFYRETDRST-GFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 41 ~~l~~~f~~~G~i~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.++.+..++||.+..+.+...+...... --.||+|...++|.+|+..|+|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy 353 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY 353 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce
Confidence 3556778899999888777765443332 237888988888888888888876
No 167
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.20 E-value=1.7 Score=33.22 Aligned_cols=68 Identities=10% Similarity=0.075 Sum_probs=57.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQA-GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......|.|-.+|..++..++..+...+ -.|..++++++.. -++-..++.|.+..+|......+||..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~ 139 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQ 139 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCc
Confidence 3347788888999999999999999876 4788899999643 335579999999999999999999987
No 168
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=90.23 E-value=0.38 Score=33.61 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=29.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
.+.+++|+||.|.+.+.+++++. |||..+.++.
T Consensus 139 ~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~ 171 (231)
T KOG4209|consen 139 RGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPA 171 (231)
T ss_pred CCCcceeEEEecccHhhhHHHhh-cCCccccccc
Confidence 66789999999999999999999 9998888764
No 169
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=85.93 E-value=0.84 Score=37.08 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCcc---cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 79 EEAEKVVEMFNRYE---TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 79 ~~a~~a~~~l~~~~---~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
.+...+++.+-... ..-+|+|+||++..+++|.+|+++|++..+.
T Consensus 436 ~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~ 483 (894)
T KOG0132|consen 436 QDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVA 483 (894)
T ss_pred HHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhccccc
Confidence 34444444333332 5678999999999999999999999976554
No 170
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=84.99 E-value=0.12 Score=34.72 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=29.3
Q ss_pred ccCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 92 ~~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
.+|+++||+|..|.+-....=|+..|||-.+..+.
T Consensus 72 ~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 72 KTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRT 106 (219)
T ss_pred CCCcccceEEEEecCccceEEEEeccCCceeccee
Confidence 39999999999999988877888889987766543
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=84.13 E-value=8.3 Score=25.07 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=32.4
Q ss_pred HHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 42 KLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 42 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+|.+.|..||.+.=+++..+ .-+|+|.+-++|.+|+. +++..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 56677888998766665544 48999999999999998 77766
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=84.04 E-value=0.8 Score=32.34 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=27.5
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 96 SHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 96 ~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
-+|-.+|.|...++|++|+..|||+.+..+.+
T Consensus 109 l~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi 140 (260)
T KOG2202|consen 109 LVGNVYVKFRSEEDAEAALEDLNNRWYNGRPI 140 (260)
T ss_pred hhhhhhhhcccHHHHHHHHHHHcCccccCCcc
Confidence 35667999999999999999999988777654
No 173
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=82.42 E-value=1.4 Score=31.94 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=23.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 99 FGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 99 ~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.-||+|...++|.+|+-.|||++...+
T Consensus 331 RiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 331 RIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred eeeeeeccHHHHHHHHHhcCCceecce
Confidence 358999999999999999999987543
No 174
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=82.05 E-value=1 Score=36.31 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=26.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQAR 122 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~ 122 (128)
..+.+.|+||.|.++.+|++|+..|+|..+
T Consensus 215 k~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 215 KRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred hccccccceeeehhhhhHHHHHHHhcceee
Confidence 567889999999999999999999999654
No 175
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=79.31 E-value=0.98 Score=32.52 Aligned_cols=53 Identities=9% Similarity=0.204 Sum_probs=33.4
Q ss_pred CCCCCeEEEcCCCC------------CCCHHHHHHHhhccCCeeEEEEEe-----cCCCCCcceEEEEEe
Q 040490 23 PPEDAKLFVGNLRY------------DVDSEKLAHLFNQAGVVEISEVIF-----YRETDRSTGFGFVTM 75 (128)
Q Consensus 23 ~~~~~~l~v~nL~~------------~~~~~~l~~~f~~~G~i~~~~~~~-----~~~~~~~~g~afv~f 75 (128)
...+-+||+.+||- ..++.-|+..|..||.|..+.++. ...+++..|.-|-.|
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gf 215 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGF 215 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeecc
Confidence 34456777777764 256678999999999998875533 224455444444333
No 176
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=79.00 E-value=10 Score=27.59 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=56.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCC-------CCCcceEEEEEeCCHHHHHHH----HHHhcC
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE-------TDRSTGFGFVTMSTVEEAEKV----VEMFNR 90 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-------~~~~~g~afv~f~~~~~a~~a----~~~l~~ 90 (128)
+.-.++.|...|+..+++-..+...|.+||+|.++.++.+.. ..+......+.|-+.+.|... ++.|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 344567788899999999999999999999999999987751 122344678888877765432 222222
Q ss_pred cc---cCCcccEEEEEe
Q 040490 91 YE---TGCSHGFGFFTM 104 (128)
Q Consensus 91 ~~---~~~~~~~~fv~f 104 (128)
.. .-......||.+
T Consensus 91 fK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHhcCCcceeEEEEEE
Confidence 22 344555667765
No 177
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=78.83 E-value=1.9 Score=35.49 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=51.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc---cCCc
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---TGCS 96 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---~~~~ 96 (128)
+.++.|.+-..+...|-.++..||.+.+.+.+++-. .+.|.|.+.+.|-.|+..++|.+ +|.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~P 365 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAP 365 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCc
Confidence 344445555677778889999999999998777643 79999999999999999999998 5555
No 178
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.36 E-value=1.9 Score=32.11 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=29.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+|-+.-|+||+|.+.+++++|.-.|++..+..+
T Consensus 277 tgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 277 TGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred ccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 888999999999999999999999999766544
No 179
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.49 E-value=7 Score=31.01 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=57.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEEecCCCCCcc-------eE-----EEEEeCCHH--HHH-
Q 040490 23 PPEDAKLFVGNLRYD-VDSEKLAHLFNQA----GVVEISEVIFYRETDRST-------GF-----GFVTMSTVE--EAE- 82 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~-~~~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~-------g~-----afv~f~~~~--~a~- 82 (128)
...+++|-|-||.|+ +..++|..+|.+| |.|.++.+.... -|+.| |- --+.=.... +..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-FGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-FGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-hhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 456789999999998 7779999998876 588888765542 12111 00 000000000 000
Q ss_pred ---HHHHHhcCcccCCc-ccEEEEEeCCHHHHHHHHHHhcCCCc
Q 040490 83 ---KVVEMFNRYETGCS-HGFGFFTMSDESKLNDAIAALDGQAR 122 (128)
Q Consensus 83 ---~a~~~l~~~~~~~~-~~~~fv~f~~~~~a~~a~~~~~g~~~ 122 (128)
.-...|..+..++- .-|+.|.|.+.+.|.+.....+|..+
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~Ef 293 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEF 293 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCccee
Confidence 01222333334443 34588888888888888888777554
No 180
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=76.27 E-value=3.8 Score=28.94 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=27.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQAR 122 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~ 122 (128)
.|++.+.+-|.|...++|.+|++.++|..+
T Consensus 120 ~G~s~Gta~v~~~r~~DA~~avk~~~gv~l 149 (243)
T KOG0533|consen 120 AGRSLGTADVSFNRRDDAERAVKKYNGVAL 149 (243)
T ss_pred CCCCCccceeeecchHhHHHHHHHhcCccc
Confidence 899999999999999999999999999544
No 181
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.27 E-value=12 Score=27.34 Aligned_cols=73 Identities=16% Similarity=0.085 Sum_probs=49.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcccEEEEEeCCHH
Q 040490 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHGFGFFTMSDES 108 (128)
Q Consensus 29 l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~fv~f~~~~ 108 (128)
|-|-++|+.-. .-|..+|.+||.|.+.... ..--+-+|-|.+..+|++||. -++...+...-.|.....++.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 33446666543 4566789999998765332 222378999999999999998 566666666666666666654
Q ss_pred H
Q 040490 109 K 109 (128)
Q Consensus 109 ~ 109 (128)
.
T Consensus 272 v 272 (350)
T KOG4285|consen 272 V 272 (350)
T ss_pred H
Confidence 4
No 182
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=75.03 E-value=9.6 Score=23.68 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=29.7
Q ss_pred CeEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHH
Q 040490 27 AKLFVGNLRYDV---------DSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST-VEEAEKVVE 86 (128)
Q Consensus 27 ~~l~v~nL~~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~ 86 (128)
.++.|-|++... +.+.|++.|..|.++. ++.+..+ ..++|++.|.|.+ -.-...|++
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 455566665433 4578999999998765 4444543 3678999999985 344444444
No 183
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=72.87 E-value=3.4 Score=32.80 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=24.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQAR 122 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~ 122 (128)
+-..|.|+||++.+-++|.+||..|+...+
T Consensus 443 sPGaRCYGfVTMSts~eAtkCI~hLHrTEL 472 (940)
T KOG4661|consen 443 SPGARCYGFVTMSTSAEATKCIEHLHRTEL 472 (940)
T ss_pred CCCcceeEEEEecchHHHHHHHHHhhhhhh
Confidence 444678999999999999999998765443
No 184
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=72.65 E-value=10 Score=20.85 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.1
Q ss_pred HHHHHHhhccCCeeEEEEEe
Q 040490 41 EKLAHLFNQAGVVEISEVIF 60 (128)
Q Consensus 41 ~~l~~~f~~~G~i~~~~~~~ 60 (128)
.+||++|+.+|+|..+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57899999999998775543
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=71.49 E-value=4.2 Score=31.42 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=45.5
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcccEE
Q 040490 25 EDAKLFVGNLRYDV-DSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHGFG 100 (128)
Q Consensus 25 ~~~~l~v~nL~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 100 (128)
+-+.+-+.-.|+.. +.++|...|.+||.|..|++-... -.|.|+|.+...|-+|...-.....+|.....
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEE
Confidence 33445555566654 457899999999999998765442 26999999988886665532222334444333
No 186
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=70.54 E-value=14 Score=24.97 Aligned_cols=58 Identities=14% Similarity=0.025 Sum_probs=38.4
Q ss_pred CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc--Ccc-cCCcccEEEE
Q 040490 39 DSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN--RYE-TGCSHGFGFF 102 (128)
Q Consensus 39 ~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~-~~~~~~~~fv 102 (128)
....|+++|..++.+....++..- +-..|.|.+.+.|.++...++ +.. .|....+-|.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 347889999999988887766542 258899999999999999988 544 3444344444
No 187
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=69.25 E-value=6.1 Score=24.04 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=17.2
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcC
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAALDG 119 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~~g 119 (128)
.+...-|+|.|.+.+.|+.|+..+.-
T Consensus 34 ~~G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 34 SRGDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -TT-SEEEEEESS---HHHHHHHHHH
T ss_pred cCCCCEEEEEECCcchHHHHHHHHHh
Confidence 34566799999999999999987643
No 188
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=69.03 E-value=21 Score=20.91 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=41.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQ-AG-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF 88 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 88 (128)
..|+--.+..++..+++..++. || .+..+..+..+ .+ .--|+|.+...+.|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHhh
Confidence 4566678899999999999998 56 56666665554 12 225999999888887765543
No 189
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=68.54 E-value=5.5 Score=29.59 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=24.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 100 GFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 100 ~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
.+++|.+.++|..+|.+++|..+..+++
T Consensus 168 vYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 168 VYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred EEEEecchHHHHHHHHHhccccccCceE
Confidence 3899999999999999999887776653
No 190
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=68.06 E-value=6 Score=31.52 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=28.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.-+.+..|||.|.+.++|-+...+|||..++.
T Consensus 477 mDkIKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 477 MDKIKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred HHHhhcceeEecccHHHHHHHHHHHhccccCC
Confidence 45777889999999999999999999987764
No 191
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=66.68 E-value=20 Score=19.92 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=34.8
Q ss_pred CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 37 DVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 37 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.++-++++..+.+|+- ..| ..++ .| -||.|.+..+|++|.+..++..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~ 57 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-----TG-FYIVFNDSKEAERCFRAEDGTL 57 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-----CE-EEEEECChHHHHHHHHhcCCCE
Confidence 4677899999999973 222 3333 33 7899999999999999877754
No 192
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=65.64 E-value=4.2 Score=24.07 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=21.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhh
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFN 48 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~ 48 (128)
....++|.|.|||...+++++++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 45678899999999999999987654
No 193
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=65.41 E-value=5.1 Score=29.72 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=20.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALD 118 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~ 118 (128)
.-..++|+||+|.+++.|+.|....-
T Consensus 260 ~~~~~~CAFv~ftTR~aAE~Aae~~~ 285 (377)
T KOG0153|consen 260 ILPRKGCAFVTFTTREAAEKAAEKSF 285 (377)
T ss_pred eecccccceeeehhhHHHHHHHHhhc
Confidence 44456699999999999999877653
No 194
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=65.35 E-value=22 Score=19.83 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=34.0
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcc---------cCCcccEEEEEeCCHHHHHHHHHHhcCCC
Q 040490 70 FGFVTMSTVEEAEKVVEMFNRYE---------TGCSHGFGFFTMSDESKLNDAIAALDGQA 121 (128)
Q Consensus 70 ~afv~f~~~~~a~~a~~~l~~~~---------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~ 121 (128)
+.++.|.+..+|.++-+.+.... ..-+.+||++-.-..++.+.+...+....
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEENG 63 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHHCC
Confidence 67899999999998888777653 22245566554444466666666555443
No 195
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=65.25 E-value=24 Score=20.26 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=40.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQ-AG-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 87 (128)
..|+-..+..++..+++..++. |+ .+..+..+..+. ..--|||.+...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 4667788999999999999997 55 556666555541 222499999887777665443
No 196
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=64.94 E-value=29 Score=23.64 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=36.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCcc-----cCCcccEEEEEeCCHHHHHHHHHHh
Q 040490 71 GFVTMSTVEEAEKVVEMFNRYE-----TGCSHGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 71 afv~f~~~~~a~~a~~~l~~~~-----~~~~~~~~fv~f~~~~~a~~a~~~~ 117 (128)
.|..|.+.++|.+.++....-. +|-..|-+.+...+.++|.++++.+
T Consensus 19 ~~~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 19 KYKVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp -EEEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CeeEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHh
Confidence 6788999999999999776644 5555555667779999999999886
No 197
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=59.36 E-value=2 Score=32.33 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=43.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 87 (128)
++++|.+|+..+...++.+.|..+|++....+.. +....+|-+.|....+...|++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~ 208 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRS 208 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHh
Confidence 6799999999999999999999999887665432 22334666888877777777773
No 198
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=51.07 E-value=47 Score=25.01 Aligned_cols=46 Identities=13% Similarity=0.295 Sum_probs=33.6
Q ss_pred EEEeCCHHHHHHHHHHhcC-----------cccCCcccEEEEEeCCHHHHHHHHHHh
Q 040490 72 FVTMSTVEEAEKVVEMFNR-----------YETGCSHGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 72 fv~f~~~~~a~~a~~~l~~-----------~~~~~~~~~~fv~f~~~~~a~~a~~~~ 117 (128)
+.+|.+.++..+|+..+-- ..+|+++||+.|...+...+.+.+..|
T Consensus 88 L~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiL 144 (498)
T KOG4849|consen 88 LLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEIL 144 (498)
T ss_pred eeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhc
Confidence 3466777777777763321 128999999999999988888777654
No 199
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=46.17 E-value=29 Score=20.05 Aligned_cols=26 Identities=8% Similarity=0.226 Sum_probs=21.7
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhcCc
Q 040490 66 RSTGFGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 66 ~~~g~afv~f~~~~~a~~a~~~l~~~ 91 (128)
..+||-||+=.++.+..+|++.+.+.
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 36999999999999999998876654
No 200
>PHA01632 hypothetical protein
Probab=40.08 E-value=35 Score=18.33 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=16.2
Q ss_pred EEcCCCCCCCHHHHHHHhhc
Q 040490 30 FVGNLRYDVDSEKLAHLFNQ 49 (128)
Q Consensus 30 ~v~nL~~~~~~~~l~~~f~~ 49 (128)
.|..+|...++++|+..+.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 34689999999999987654
No 201
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=38.17 E-value=92 Score=18.82 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=26.2
Q ss_pred CCCHHHHHHHhhc-cCCeeEEEEEecC----CCCCcceEEEEEeCCHHHHH
Q 040490 37 DVDSEKLAHLFNQ-AGVVEISEVIFYR----ETDRSTGFGFVTMSTVEEAE 82 (128)
Q Consensus 37 ~~~~~~l~~~f~~-~G~i~~~~~~~~~----~~~~~~g~afv~f~~~~~a~ 82 (128)
..+..+|++-+.. ++.-.+..++..- ..++++|||.| |.+.+.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~k 79 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERAR 79 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHH
Confidence 5667788877664 6644344344332 23466777766 66666554
No 202
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=37.92 E-value=4.3 Score=32.00 Aligned_cols=69 Identities=10% Similarity=0.045 Sum_probs=47.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...|.+|+.|+++.++-++|..++..+-.+...-+..........-+.+++|.---.-..|+..|++.-
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ir 297 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIR 297 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcc
Confidence 346889999999999999999999887544444333222223344467888887666667777777654
No 203
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=36.92 E-value=80 Score=17.78 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=27.9
Q ss_pred HHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCC
Q 040490 41 EKLAHLFNQAG-VVEISEVIFYRETDRSTGFGFVTMST 77 (128)
Q Consensus 41 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~ 77 (128)
++|++.|...| ++.++.-|+.+.++.+--.-+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~ 39 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVP 39 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeee
Confidence 46888888888 77888888887767666667776654
No 204
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=36.08 E-value=1.4e+02 Score=20.44 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=44.2
Q ss_pred CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc---------cCCcccEEEEEeCCHHH
Q 040490 39 DSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---------TGCSHGFGFFTMSDESK 109 (128)
Q Consensus 39 ~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---------~~~~~~~~fv~f~~~~~ 109 (128)
.|.+-+++|.+||-. + ++ ++.-.+.+++..+.+.+.... -||.++-+.-.-.++++
T Consensus 3 ~EyqaK~ll~~~gi~----v--------p~---g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~e 67 (202)
T PF08442_consen 3 HEYQAKELLRKYGIP----V--------PR---GVVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEE 67 (202)
T ss_dssp -HHHHHHHHHCTT----------------S---EEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHH
T ss_pred hHHHHHHHHHHcCCC----C--------CC---eeecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHH
Confidence 456677888888821 1 11 133466788888888887654 34444444334567899
Q ss_pred HHHHHHHhcCCCcc
Q 040490 110 LNDAIAALDGQARI 123 (128)
Q Consensus 110 a~~a~~~~~g~~~~ 123 (128)
|..+.+.|=|..+.
T Consensus 68 a~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 68 AKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHTTTTSEEE
T ss_pred HHHHHHHHhCCceE
Confidence 99988888777654
No 205
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=36.00 E-value=41 Score=24.35 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=16.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCc
Q 040490 71 GFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 71 afv~f~~~~~a~~a~~~l~~~ 91 (128)
|||+|.+..+|+.+++.+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~ 21 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK 21 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC
Confidence 689999999999988855544
No 206
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=35.92 E-value=94 Score=18.26 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~ 77 (128)
..-||||+++..+.+.--..+.+..+.-.-+.+..+ +. ..||.|-...+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~--~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD--NN-EQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc--CC-CCCEEEEEeCC
Confidence 356999999888777655555555544333333322 22 67899888743
No 207
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=35.92 E-value=67 Score=22.99 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=26.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~ 61 (128)
.....|+|||++++..-+..++...-.+....+|..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 345668999999999999988887655444444443
No 208
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=35.46 E-value=83 Score=17.48 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=29.3
Q ss_pred HHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHH
Q 040490 41 EKLAHLFNQAG-VVEISEVIFYRETDRSTGFGFVTMSTVE 79 (128)
Q Consensus 41 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~ 79 (128)
++|.+.|...| ++..+.-+..+.+..+.-..||+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~ 41 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKP 41 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCc
Confidence 56788888877 7788888888766777777888776543
No 209
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=34.82 E-value=8.7 Score=26.87 Aligned_cols=66 Identities=29% Similarity=0.417 Sum_probs=52.0
Q ss_pred CCeEEEcC----CCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 26 DAKLFVGN----LRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 26 ~~~l~v~n----L~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..++.-|+ |...++++.+...|..-+++..+.+.++.. ++++-+.|+++....+...++....+..
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccC
Confidence 35566666 777788888888888889888888877754 7788899999998888888888766665
No 210
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=34.68 E-value=13 Score=20.72 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=17.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFN 48 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~ 48 (128)
..+++|||++|..|-.+.=..++.
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred cCceEEECCCChHHHHcCcchHHH
Confidence 468999999999887765444443
No 211
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=34.12 E-value=2.2e+02 Score=22.10 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=27.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEE
Q 040490 23 PPEDAKLFVGNLRYD-VDSEKLAHLFNQA----GVVEISEVI 59 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~-~~~~~l~~~f~~~----G~i~~~~~~ 59 (128)
...+.+|-|-||.|+ +...+|...|.+| |.+..+.+.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 355678889999998 7778998888764 566666543
No 212
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=34.04 E-value=1e+02 Score=18.60 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=28.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST 77 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~ 77 (128)
..-||||+++..+.+.--..+-+.++.-.-+.+.. .+.. .||.|-++..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~--~~~e-qG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWA--TNTE-SGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEc--CCCC-CCcEEEecCC
Confidence 35699998877776654444444454433332222 2333 3899888765
No 213
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.40 E-value=48 Score=23.48 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEI 55 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~ 55 (128)
.....++|+-|+|...+++.+..+...+|-+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 455678999999999999999999988874433
No 214
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.30 E-value=23 Score=26.95 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=45.9
Q ss_pred CeEEEcCCCCCCCHH--------HHHHHhhc--cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 040490 27 AKLFVGNLRYDVDSE--------KLAHLFNQ--AGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~--------~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 86 (128)
+.+|+.+........ ++..+|.. .+.+..+...++..+...+|..|++|...+.+++...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 567777766655444 88888887 5677777777776677889999999999999988873
No 215
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=31.34 E-value=1.5e+02 Score=20.17 Aligned_cols=44 Identities=11% Similarity=-0.079 Sum_probs=28.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecC--CCCCcceEEEEEeCCHH
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR--ETDRSTGFGFVTMSTVE 79 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~--~~~~~~g~afv~f~~~~ 79 (128)
+.-.|.|+|-... ...|......+...+ .+|.+| |.|+.|+...
T Consensus 87 lHWlV~nIPg~~~--------~~~G~~i~~Y~~P~Pp~~tG~HR-yVfll~rQ~~ 132 (185)
T KOG3346|consen 87 LHWLVTNIPGTDG--------ISKGQEISEYLGPGPPKGTGLHR-YVFLLYRQPG 132 (185)
T ss_pred EEEEEEeecCCcc--------ccCCeEeeeeeCCCCCCCCCceE-EEEEEEEcCC
Confidence 4555678887765 345655444444443 477888 9999998644
No 216
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=30.70 E-value=46 Score=16.19 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHhhccC
Q 040490 36 YDVDSEKLAHLFNQAG 51 (128)
Q Consensus 36 ~~~~~~~l~~~f~~~G 51 (128)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4788899999998754
No 217
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=29.23 E-value=74 Score=23.85 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=28.9
Q ss_pred ccCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 92 ~~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.++++++-+.|.|.+...|+.|+.-++++..--
T Consensus 111 eT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 111 ETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 489999999999999999999999998876543
No 218
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=28.31 E-value=98 Score=16.54 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=29.8
Q ss_pred EEEeCCHHHHHHHHHHhcCcc---------cCCcccEEE-EEeCCHHHHHHHHHHhc
Q 040490 72 FVTMSTVEEAEKVVEMFNRYE---------TGCSHGFGF-FTMSDESKLNDAIAALD 118 (128)
Q Consensus 72 fv~f~~~~~a~~a~~~l~~~~---------~~~~~~~~f-v~f~~~~~a~~a~~~~~ 118 (128)
+..|.+.+.|++.+..|.... .+...-..+ --|.+.++|++++..|.
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 446788888888887776653 111111122 26899999998888775
No 219
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=27.92 E-value=83 Score=20.93 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=22.1
Q ss_pred CCCcceEEEEEeCC--HHHHHHHHHHhc----Cc-ccCCcccEEEEE
Q 040490 64 TDRSTGFGFVTMST--VEEAEKVVEMFN----RY-ETGCSHGFGFFT 103 (128)
Q Consensus 64 ~~~~~g~afv~f~~--~~~a~~a~~~l~----~~-~~~~~~~~~fv~ 103 (128)
+..+||++.|+|.- -.+|-..++..- .. .+|+.++.+|+.
T Consensus 110 N~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~ 156 (170)
T KOG2944|consen 110 NKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLH 156 (170)
T ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEE
Confidence 34558888888863 334433333111 11 167777777764
No 220
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=26.48 E-value=1.8e+02 Score=18.61 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhhc-cC-CeeEEEEEecC----CCCCcceEEEEEeCCHHHHH
Q 040490 37 DVDSEKLAHLFNQ-AG-VVEISEVIFYR----ETDRSTGFGFVTMSTVEEAE 82 (128)
Q Consensus 37 ~~~~~~l~~~f~~-~G-~i~~~~~~~~~----~~~~~~g~afv~f~~~~~a~ 82 (128)
..+..+|++-+.. |+ .-.+..++..- ..+.+.|||.| |.+.+.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 5677888877765 55 33333333322 34567788866 66665543
No 221
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=24.75 E-value=96 Score=22.51 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=20.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEIS 56 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~~G~i~~~ 56 (128)
.+.|+|+|+.++...+..++.....+...
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~ 131 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCA 131 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCcee
Confidence 46789999999998888887643333333
No 222
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=24.02 E-value=1.3e+02 Score=24.02 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=37.5
Q ss_pred CCCeEEEcCCCCCCCH-HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEE
Q 040490 25 EDAKLFVGNLRYDVDS-EKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVT 74 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~-~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~ 74 (128)
....||.|-.|-+.++ ++|++.+++. .+.+..+...+.|...-||+|-+
T Consensus 296 ~~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGfRc 345 (603)
T COG0481 296 VKPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGFRC 345 (603)
T ss_pred CCceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCceee
Confidence 4567999999999877 7999999987 34555666677788878887754
No 223
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=23.19 E-value=1.3e+02 Score=21.39 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=18.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQ 49 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~ 49 (128)
.+.|+|+|+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5678999999998888887754
No 224
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.85 E-value=84 Score=15.02 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=14.2
Q ss_pred CCCHHHHHHHhhccCCe
Q 040490 37 DVDSEKLAHLFNQAGVV 53 (128)
Q Consensus 37 ~~~~~~l~~~f~~~G~i 53 (128)
.++.++|+..+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 47889999999999843
No 225
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.86 E-value=1.9e+02 Score=22.04 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=42.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGV-VEISEVIFYRETD--RSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.-+.|-|.+||+..+++++.+....+-. +....+.....+- ...+.+||.|...++...-...++++.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 3456778899999999999888777531 1111111111111 124568999999888766666666654
No 226
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.46 E-value=1.3e+02 Score=15.19 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=20.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCC
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGV 52 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~ 52 (128)
..+++.+.....+.+.+.++...+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 45677777668888999999999875
No 227
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=20.22 E-value=1.6e+02 Score=17.91 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=18.4
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~ 117 (128)
...--|+|++|.+++...++...+
T Consensus 63 dE~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 63 DEEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred CcEEEEEEEEcCchhHHHHHHHHh
Confidence 445668899999998888877664
No 228
>PF15063 TC1: Thyroid cancer protein 1
Probab=20.21 E-value=73 Score=18.31 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCe
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVV 53 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i 53 (128)
.++--+.|+=.+++..+|+.+|.+-|..
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 4455577888999999999999999853
Done!