Query 040490
Match_columns 128
No_of_seqs 123 out of 1119
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 99.9 3.1E-25 1.1E-29 150.5 13.3 102 24-125 13-171 (213)
2 1fxl_A Paraneoplastic encephal 99.9 1.9E-23 6.5E-28 135.7 15.0 101 26-126 2-159 (167)
3 3nmr_A Cugbp ELAV-like family 99.9 1E-23 3.4E-28 138.1 13.8 99 25-123 2-162 (175)
4 2qfj_A FBP-interacting repress 99.9 1.3E-24 4.5E-29 146.8 8.0 103 24-126 26-196 (216)
5 1b7f_A Protein (SXL-lethal pro 99.9 2.1E-23 7.1E-28 135.8 13.4 100 25-124 2-158 (168)
6 1l3k_A Heterogeneous nuclear r 99.9 1.2E-22 4.1E-27 135.3 12.5 103 19-123 6-171 (196)
7 2cjk_A Nuclear polyadenylated 99.9 3.9E-23 1.3E-27 134.5 9.9 100 25-125 2-156 (167)
8 3md3_A Nuclear and cytoplasmic 99.9 1E-22 3.4E-27 132.1 11.7 98 27-125 1-157 (166)
9 3smz_A Protein raver-1, ribonu 99.9 2E-20 6.7E-25 131.3 13.9 102 24-125 93-254 (284)
10 1fje_B Nucleolin RBD12, protei 99.8 1E-21 3.6E-26 128.8 4.9 103 21-125 8-164 (175)
11 2cpz_A CUG triplet repeat RNA- 99.8 6.6E-20 2.3E-24 113.2 11.9 87 6-92 5-91 (115)
12 3sde_A Paraspeckle component 1 99.8 5.5E-20 1.9E-24 128.1 12.7 98 20-123 16-163 (261)
13 4fxv_A ELAV-like protein 1; RN 99.8 1E-19 3.6E-24 109.8 10.9 74 24-97 17-91 (99)
14 2g4b_A Splicing factor U2AF 65 99.8 7.1E-20 2.4E-24 119.5 10.0 94 25-125 3-164 (172)
15 3tyt_A Heterogeneous nuclear r 99.8 2.4E-19 8.1E-24 121.2 12.4 60 25-89 3-63 (205)
16 3s8s_A Histone-lysine N-methyl 99.8 1E-18 3.5E-23 107.3 13.9 77 24-100 4-81 (110)
17 2ghp_A U4/U6 snRNA-associated 99.8 1.8E-19 6.2E-24 126.8 11.4 102 20-124 35-186 (292)
18 3smz_A Protein raver-1, ribonu 99.8 3E-19 1E-23 125.3 12.0 94 24-124 20-164 (284)
19 2adc_A Polypyrimidine tract-bi 99.8 8.8E-19 3E-23 119.8 12.5 97 22-123 30-215 (229)
20 2cqc_A Arginine/serine-rich sp 99.8 1.2E-18 4.2E-23 103.8 10.7 72 21-92 10-81 (95)
21 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-18 4.1E-23 103.8 10.3 72 21-92 11-82 (94)
22 2la6_A RNA-binding protein FUS 99.8 4.1E-18 1.4E-22 102.5 12.4 79 18-96 5-92 (99)
23 1x5u_A Splicing factor 3B subu 99.8 1.5E-18 5.1E-23 105.4 10.5 73 20-92 9-81 (105)
24 2dgo_A Cytotoxic granule-assoc 99.8 2.9E-18 9.9E-23 105.7 11.5 73 20-92 9-81 (115)
25 2cqd_A RNA-binding region cont 99.8 2.1E-18 7.3E-23 106.5 10.8 79 19-97 10-88 (116)
26 2do4_A Squamous cell carcinoma 99.8 4E-18 1.4E-22 102.6 11.7 73 19-92 10-82 (100)
27 1x5o_A RNA binding motif, sing 99.8 5.6E-18 1.9E-22 104.3 12.5 74 19-93 18-91 (114)
28 2cq0_A Eukaryotic translation 99.8 2E-18 6.7E-23 104.5 10.3 72 21-92 10-81 (103)
29 1p27_B RNA-binding protein 8A; 99.8 3.8E-18 1.3E-22 103.7 11.6 83 17-99 14-97 (106)
30 2lkz_A RNA-binding protein 5; 99.8 4.4E-19 1.5E-23 106.3 7.2 71 22-92 5-77 (95)
31 2yh0_A Splicing factor U2AF 65 99.8 7.6E-19 2.6E-23 117.0 8.9 94 25-125 3-184 (198)
32 1x4h_A RNA-binding protein 28; 99.8 2.6E-18 8.9E-23 105.2 10.6 70 20-89 9-78 (111)
33 2cph_A RNA binding motif prote 99.8 5.5E-18 1.9E-22 103.1 11.8 79 19-97 8-89 (107)
34 2dnh_A Bruno-like 5, RNA bindi 99.8 7.2E-18 2.5E-22 102.3 11.9 70 22-92 11-80 (105)
35 2dgp_A Bruno-like 4, RNA bindi 99.8 1.7E-18 5.9E-23 105.2 9.0 72 21-92 8-79 (106)
36 2div_A TRNA selenocysteine ass 99.8 2.7E-18 9.4E-23 103.1 9.8 75 22-96 5-81 (99)
37 1x5s_A Cold-inducible RNA-bind 99.8 6.2E-18 2.1E-22 102.1 11.4 81 22-102 8-89 (102)
38 2dgs_A DAZ-associated protein 99.8 7.4E-18 2.5E-22 101.3 11.5 76 21-97 5-81 (99)
39 3pgw_A U1-A; protein-RNA compl 99.8 7.3E-18 2.5E-22 118.1 13.2 67 21-90 4-74 (282)
40 2ghp_A U4/U6 snRNA-associated 99.8 1.4E-18 4.8E-23 122.3 9.5 98 25-124 116-280 (292)
41 1qm9_A Polypyrimidine tract-bi 99.8 2.6E-18 8.9E-23 114.7 10.1 94 25-123 2-184 (198)
42 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.1E-18 2.4E-22 99.0 10.8 73 24-96 4-77 (87)
43 2kxn_B Transformer-2 protein h 99.8 3.9E-18 1.3E-22 107.5 10.1 73 20-92 40-112 (129)
44 2db1_A Heterogeneous nuclear r 99.8 1.3E-17 4.4E-22 103.5 12.3 97 21-121 12-111 (118)
45 2dnz_A Probable RNA-binding pr 99.8 1.2E-17 3.9E-22 99.6 11.6 74 24-97 3-77 (95)
46 2d9p_A Polyadenylate-binding p 99.8 8.3E-18 2.8E-22 101.8 11.0 76 20-97 9-85 (103)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.5E-18 1.2E-22 99.9 9.0 70 23-92 4-73 (85)
48 1x4e_A RNA binding motif, sing 99.8 2.1E-18 7.1E-23 101.0 7.9 70 23-92 2-71 (85)
49 3s7r_A Heterogeneous nuclear r 99.8 4.7E-18 1.6E-22 99.8 9.5 67 21-87 6-72 (87)
50 2dh8_A DAZ-associated protein 99.8 5.1E-18 1.8E-22 103.0 9.9 72 20-92 10-81 (105)
51 1wel_A RNA-binding protein 12; 99.8 5.2E-18 1.8E-22 106.0 10.2 94 20-117 19-113 (124)
52 2dnm_A SRP46 splicing factor; 99.8 3.2E-18 1.1E-22 103.6 8.9 78 20-97 7-85 (103)
53 3md1_A Nuclear and cytoplasmic 99.8 6.3E-18 2.1E-22 98.4 9.7 67 26-92 1-67 (83)
54 1oo0_B CG8781-PA, drosophila Y 99.8 4.5E-18 1.5E-22 104.1 9.2 82 17-98 17-99 (110)
55 2lxi_A RNA-binding protein 10; 99.8 5.4E-19 1.8E-23 105.1 4.9 66 26-91 1-67 (91)
56 1whw_A Hypothetical protein ri 99.8 5E-18 1.7E-22 102.0 9.3 71 22-92 4-74 (99)
57 2khc_A Testis-specific RNP-typ 99.8 6.5E-18 2.2E-22 104.6 10.0 72 21-92 35-106 (118)
58 2dhg_A TRNA selenocysteine ass 99.8 1E-17 3.6E-22 101.4 10.7 71 21-92 4-75 (104)
59 2ywk_A Putative RNA-binding pr 99.8 5.5E-18 1.9E-22 101.1 9.2 71 21-92 11-81 (95)
60 2cpe_A RNA-binding protein EWS 99.8 5.3E-18 1.8E-22 104.2 9.4 73 20-92 9-89 (113)
61 2dng_A Eukaryotic translation 99.8 1.1E-17 3.7E-22 101.3 10.6 70 21-92 10-79 (103)
62 2hgl_A HNRPF protein, heteroge 99.8 8.1E-18 2.8E-22 106.9 10.4 90 21-115 39-132 (136)
63 3p5t_L Cleavage and polyadenyl 99.8 2.1E-18 7E-23 102.2 7.1 71 27-97 2-75 (90)
64 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3E-18 1E-22 103.5 7.9 71 22-92 8-78 (102)
65 1wi8_A EIF-4B, eukaryotic tran 99.8 7.3E-18 2.5E-22 102.2 9.5 71 20-92 9-80 (104)
66 2m2b_A RNA-binding protein 10; 99.8 3.3E-18 1.1E-22 107.9 8.1 79 21-100 18-103 (131)
67 3ns6_A Eukaryotic translation 99.8 1.6E-18 5.5E-23 104.6 6.3 71 24-94 4-80 (100)
68 1x4a_A Splicing factor, argini 99.8 3E-17 1E-21 100.3 12.1 73 17-92 13-85 (109)
69 2jrs_A RNA-binding protein 39; 99.8 1.4E-17 4.7E-22 101.9 10.4 77 21-97 21-98 (108)
70 3ulh_A THO complex subunit 4; 99.8 2.3E-17 7.8E-22 100.4 11.3 79 20-99 23-102 (107)
71 3ex7_B RNA-binding protein 8A; 99.8 1.4E-17 4.6E-22 104.2 10.4 84 18-101 14-98 (126)
72 2cqp_A RNA-binding protein 12; 99.7 6.3E-18 2.2E-22 101.4 8.4 71 22-92 11-81 (98)
73 1s79_A Lupus LA protein; RRM, 99.7 7.4E-18 2.5E-22 102.3 8.7 74 22-97 7-81 (103)
74 2do0_A HnRNP M, heterogeneous 99.7 3.4E-17 1.2E-21 100.7 11.7 70 22-92 11-80 (114)
75 2fy1_A RNA-binding motif prote 99.7 2.4E-17 8.2E-22 102.0 10.9 76 21-97 2-78 (116)
76 4f25_A Polyadenylate-binding p 99.7 7.9E-18 2.7E-22 104.0 8.6 73 25-99 4-77 (115)
77 2cq3_A RNA-binding protein 9; 99.7 3.7E-17 1.3E-21 98.9 11.4 70 21-92 10-79 (103)
78 2x1f_A MRNA 3'-END-processing 99.7 1.2E-17 4.2E-22 99.8 9.1 68 25-92 1-68 (96)
79 3n9u_C Cleavage and polyadenyl 99.7 1.7E-17 5.8E-22 107.7 10.4 82 25-109 54-138 (156)
80 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.6E-17 8.9E-22 99.6 10.5 72 19-92 8-79 (103)
81 2dha_A FLJ20171 protein; RRM d 99.7 3.5E-18 1.2E-22 106.9 6.8 95 23-121 20-118 (123)
82 2lea_A Serine/arginine-rich sp 99.7 4E-18 1.4E-22 108.2 7.1 78 20-97 41-119 (135)
83 2ek1_A RNA-binding protein 12; 99.7 4E-18 1.4E-22 101.6 6.8 70 23-92 12-81 (95)
84 2cqg_A TDP-43, TAR DNA-binding 99.7 4.6E-17 1.6E-21 98.5 11.2 67 21-87 10-76 (103)
85 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2E-17 7E-22 104.9 10.1 72 21-92 58-129 (140)
86 2cpf_A RNA binding motif prote 99.7 1.4E-17 4.9E-22 99.8 8.9 69 24-92 3-74 (98)
87 1wg5_A Heterogeneous nuclear r 99.7 2.1E-17 7.4E-22 100.3 9.4 74 21-96 10-85 (104)
88 1x5t_A Splicing factor 3B subu 99.7 7.7E-18 2.6E-22 100.6 7.3 69 24-92 3-72 (96)
89 1p1t_A Cleavage stimulation fa 99.7 1.2E-17 4E-22 101.2 8.1 92 23-117 5-97 (104)
90 1u6f_A Tcubp1, RNA-binding pro 99.7 3.3E-17 1.1E-21 104.1 10.4 71 22-92 38-108 (139)
91 1wez_A HnRNP H', FTP-3, hetero 99.7 2.8E-17 9.7E-22 99.6 9.0 68 22-92 11-78 (102)
92 2lmi_A GRSF-1, G-rich sequence 99.7 2E-17 6.8E-22 100.9 8.3 95 21-120 6-104 (107)
93 4a8x_A RNA-binding protein wit 99.7 3.1E-17 1.1E-21 96.3 8.9 78 24-101 2-81 (88)
94 2rs2_A Musashi-1, RNA-binding 99.7 1.9E-17 6.4E-22 101.4 8.2 77 21-97 20-96 (109)
95 2cpy_A RNA-binding protein 12; 99.7 5.3E-17 1.8E-21 100.1 10.3 89 22-115 11-101 (114)
96 2cq4_A RNA binding motif prote 99.7 1.6E-17 5.4E-22 102.3 7.8 69 24-93 23-91 (114)
97 2dgv_A HnRNP M, heterogeneous 99.7 9.2E-17 3.1E-21 95.1 10.8 69 22-92 4-72 (92)
98 3ucg_A Polyadenylate-binding p 99.7 3.7E-17 1.3E-21 96.2 8.7 67 25-92 5-71 (89)
99 2kt5_A RNA and export factor-b 99.7 1.3E-16 4.3E-21 99.6 11.5 75 22-97 31-106 (124)
100 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.7E-17 5.7E-22 95.2 6.8 71 27-97 1-71 (77)
101 1h2v_Z 20 kDa nuclear CAP bind 99.7 8.1E-17 2.8E-21 104.2 10.8 70 23-92 36-105 (156)
102 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6.8E-17 2.3E-21 105.5 10.5 83 20-102 66-149 (165)
103 1x4b_A Heterogeneous nuclear r 99.7 2E-17 6.8E-22 102.1 7.4 68 24-92 25-92 (116)
104 2krb_A Eukaryotic translation 99.7 2.1E-17 7.3E-22 95.9 6.9 65 26-92 1-71 (81)
105 1x4f_A Matrin 3; structural ge 99.7 1.1E-16 3.7E-21 98.4 10.3 90 7-102 6-99 (112)
106 1sjq_A Polypyrimidine tract-bi 99.7 5.1E-17 1.7E-21 98.7 8.7 62 23-90 13-74 (105)
107 2mss_A Protein (musashi1); RNA 99.7 1.9E-17 6.6E-22 94.6 6.4 64 28-92 1-64 (75)
108 2cq1_A PTB-like protein L; RRM 99.7 1.2E-16 4.3E-21 96.6 10.2 75 21-101 10-87 (101)
109 1wex_A Hypothetical protein (r 99.7 1.8E-16 6.3E-21 96.3 11.0 75 21-101 10-87 (104)
110 2dnn_A RNA-binding protein 12; 99.7 1.5E-16 5.2E-21 97.5 10.3 85 22-111 12-96 (109)
111 2kn4_A Immunoglobulin G-bindin 99.7 1.4E-16 4.7E-21 103.1 10.6 80 22-101 66-146 (158)
112 2cpi_A CCR4-NOT transcription 99.7 6.8E-17 2.3E-21 99.1 8.6 72 21-92 10-87 (111)
113 2ad9_A Polypyrimidine tract-bi 99.7 9.9E-17 3.4E-21 99.6 9.4 75 21-101 26-103 (119)
114 1x4d_A Matrin 3; structural ge 99.7 8.7E-17 3E-21 97.4 8.8 75 22-102 11-89 (102)
115 2dgw_A Probable RNA-binding pr 99.7 1.5E-16 5E-21 94.2 9.6 69 21-92 5-73 (91)
116 2dgx_A KIAA0430 protein; RRM d 99.7 9.3E-17 3.2E-21 96.1 8.4 72 23-97 6-82 (96)
117 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.8E-17 9.7E-22 99.1 6.1 71 20-92 13-84 (100)
118 3q2s_C Cleavage and polyadenyl 99.7 9.8E-17 3.4E-21 110.0 9.4 82 25-109 67-151 (229)
119 2hgm_A HNRPF protein, heteroge 99.7 9.5E-17 3.3E-21 100.7 8.5 76 21-98 37-114 (126)
120 2dis_A Unnamed protein product 99.7 1.6E-16 5.6E-21 96.9 9.2 76 23-98 5-85 (109)
121 1x4c_A Splicing factor, argini 99.7 2.8E-16 9.6E-21 95.9 10.2 64 23-93 12-75 (108)
122 2nlw_A Eukaryotic translation 99.7 8.2E-17 2.8E-21 97.9 7.6 69 23-93 12-86 (105)
123 2dnl_A Cytoplasmic polyadenyla 99.7 6.6E-17 2.3E-21 99.6 7.1 66 23-89 5-73 (114)
124 1why_A Hypothetical protein ri 99.7 4.3E-16 1.5E-20 93.2 10.5 67 21-93 12-78 (97)
125 2a3j_A U1 small nuclear ribonu 99.7 3.6E-16 1.2E-20 98.2 10.4 79 21-102 24-107 (127)
126 2ki2_A SS-DNA binding protein 99.7 4.6E-17 1.6E-21 96.1 5.9 74 27-101 2-76 (90)
127 2cpj_A Non-POU domain-containi 99.7 4.2E-16 1.4E-20 93.6 10.2 68 19-92 8-75 (99)
128 2e5j_A Methenyltetrahydrofolat 99.7 7.2E-16 2.4E-20 92.3 11.1 73 20-97 13-86 (97)
129 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-16 4.5E-21 93.5 7.5 80 26-114 7-87 (89)
130 3r27_A HnRNP L, heterogeneous 99.7 3.9E-16 1.3E-20 94.0 9.8 77 21-106 16-95 (100)
131 2fc8_A NCL protein; structure 99.7 4.1E-16 1.4E-20 94.0 9.9 69 21-92 10-78 (102)
132 1iqt_A AUF1, heterogeneous nuc 99.7 5.6E-17 1.9E-21 92.6 5.7 68 28-96 1-69 (75)
133 2jwn_A Embryonic polyadenylate 99.7 1.9E-16 6.6E-21 98.7 8.4 67 25-92 35-101 (124)
134 2hgn_A Heterogeneous nuclear r 99.7 3E-17 1E-21 104.6 4.7 69 21-92 41-109 (139)
135 2fc9_A NCL protein; structure 99.7 2.9E-16 9.9E-21 94.6 8.7 67 22-92 11-77 (101)
136 2err_A Ataxin-2-binding protei 99.7 2.2E-16 7.6E-21 96.6 8.0 71 20-92 23-93 (109)
137 2cpx_A Hypothetical protein FL 99.7 2.2E-16 7.6E-21 97.1 7.9 77 21-97 20-97 (115)
138 2ytc_A PRE-mRNA-splicing facto 99.7 8E-16 2.7E-20 89.8 9.9 67 20-92 6-73 (85)
139 1fj7_A Nucleolin RBD1, protein 99.7 4.2E-17 1.4E-21 98.3 4.0 69 22-92 13-81 (101)
140 2xs2_A Deleted in azoospermia- 99.7 6.2E-17 2.1E-21 97.7 4.6 78 23-103 6-84 (102)
141 3lqv_A PRE-mRNA branch site pr 99.7 1.7E-15 5.7E-20 93.2 11.0 79 23-107 5-84 (115)
142 2f3j_A RNA and export factor b 99.7 1.3E-15 4.5E-20 100.6 10.9 78 24-102 86-164 (177)
143 2dnq_A RNA-binding protein 4B; 99.7 1.4E-15 4.8E-20 89.8 9.7 63 22-92 4-66 (90)
144 3md3_A Nuclear and cytoplasmic 99.7 3.3E-15 1.1E-19 96.5 12.1 72 21-92 82-153 (166)
145 2e44_A Insulin-like growth fac 99.6 1.7E-15 5.7E-20 90.4 9.6 76 18-97 7-84 (96)
146 3beg_B Splicing factor, argini 99.6 4.9E-16 1.7E-20 95.9 6.9 67 23-96 13-80 (115)
147 2kvi_A Nuclear polyadenylated 99.6 3.7E-15 1.3E-19 89.0 10.3 75 21-103 5-81 (96)
148 2cpd_A Apobec-1 stimulating pr 99.6 4.3E-15 1.5E-19 89.1 10.4 67 18-92 7-75 (99)
149 2jvr_A Nucleolar protein 3; RN 99.6 5.8E-16 2E-20 95.1 6.5 72 21-96 23-96 (111)
150 2lcw_A RNA-binding protein FUS 99.4 2.1E-17 7.2E-22 102.1 0.0 71 22-92 3-81 (116)
151 1wf1_A RNA-binding protein RAL 99.6 4.3E-15 1.5E-19 90.8 10.4 67 23-97 24-92 (110)
152 1nu4_A U1A RNA binding domain; 99.6 3.8E-16 1.3E-20 93.3 5.5 74 21-97 3-81 (97)
153 2la4_A Nuclear and cytoplasmic 99.6 2.6E-15 9E-20 90.3 9.1 64 23-92 24-87 (101)
154 1whx_A Hypothetical protein ri 99.6 1.5E-15 5.1E-20 93.2 8.0 75 23-103 7-82 (111)
155 2i2y_A Fusion protein consists 99.6 4.4E-15 1.5E-19 95.4 10.2 74 21-99 68-142 (150)
156 2g4b_A Splicing factor U2AF 65 99.6 5.8E-15 2E-19 96.0 10.9 70 23-92 91-160 (172)
157 2dgt_A RNA-binding protein 30; 99.6 3.5E-15 1.2E-19 88.4 8.9 64 21-92 5-68 (92)
158 2jvo_A Nucleolar protein 3; nu 99.6 2.9E-15 9.9E-20 91.5 8.7 64 21-92 26-89 (108)
159 2xnq_A Nuclear polyadenylated 99.6 4.3E-15 1.5E-19 89.0 9.3 69 21-97 17-87 (97)
160 1x4g_A Nucleolysin TIAR; struc 99.6 2.8E-15 9.7E-20 91.5 8.5 65 22-92 21-85 (109)
161 2cq2_A Hypothetical protein LO 99.6 1.3E-15 4.5E-20 93.8 6.9 64 23-92 22-87 (114)
162 1fjc_A Nucleolin RBD2, protein 99.6 8.6E-16 3E-20 91.6 5.8 68 20-92 10-77 (96)
163 3pgw_S U1-70K; protein-RNA com 99.6 4.1E-15 1.4E-19 110.4 10.7 69 24-92 100-168 (437)
164 2hvz_A Splicing factor, argini 99.6 1.4E-15 4.6E-20 91.6 6.7 61 27-92 1-61 (101)
165 2dnp_A RNA-binding protein 14; 99.6 4.1E-15 1.4E-19 87.7 8.7 63 22-92 5-67 (90)
166 2qfj_A FBP-interacting repress 99.6 1.2E-14 4E-19 97.8 11.6 76 24-99 123-199 (216)
167 1b7f_A Protein (SXL-lethal pro 99.6 1.3E-14 4.5E-19 93.9 11.3 70 23-92 86-155 (168)
168 2e5g_A U6 snRNA-specific termi 99.6 9.5E-15 3.2E-19 86.9 9.5 65 22-92 4-68 (94)
169 1fxl_A Paraneoplastic encephal 99.6 1.1E-14 3.8E-19 94.0 10.5 71 23-93 85-155 (167)
170 2j8a_A Histone-lysine N-methyl 99.6 2.3E-15 7.9E-20 93.9 6.8 66 27-92 3-82 (136)
171 2dgu_A Heterogeneous nuclear r 99.6 6.7E-15 2.3E-19 88.9 8.7 62 23-92 8-69 (103)
172 3d2w_A TAR DNA-binding protein 99.6 3.4E-15 1.2E-19 88.2 7.2 57 22-83 7-63 (89)
173 3nmr_A Cugbp ELAV-like family 99.6 8.3E-15 2.8E-19 95.4 9.7 69 23-92 92-160 (175)
174 2yh0_A Splicing factor U2AF 65 99.6 1.9E-14 6.4E-19 95.6 11.2 70 23-92 111-180 (198)
175 1sjr_A Polypyrimidine tract-bi 99.6 9.9E-15 3.4E-19 95.0 9.3 68 22-93 42-109 (164)
176 1x5p_A Negative elongation fac 99.6 2.6E-14 8.9E-19 85.4 10.4 65 20-92 9-73 (97)
177 3egn_A RNA-binding protein 40; 99.6 1.5E-15 5.3E-20 96.8 5.1 80 23-102 42-127 (143)
178 2cqh_A IGF-II mRNA-binding pro 99.6 4.6E-15 1.6E-19 88.0 6.3 68 23-97 5-75 (93)
179 2e5i_A Heterogeneous nuclear r 99.6 6.5E-14 2.2E-18 87.5 11.8 64 24-93 23-87 (124)
180 1l3k_A Heterogeneous nuclear r 99.6 2.2E-14 7.4E-19 95.1 10.0 73 24-97 102-175 (196)
181 2voo_A Lupus LA protein; RNA-b 99.6 2.2E-14 7.6E-19 95.9 9.8 71 26-97 109-179 (193)
182 1wg1_A KIAA1579 protein, homol 99.6 9.1E-15 3.1E-19 86.0 6.7 62 24-92 3-64 (88)
183 2hzc_A Splicing factor U2AF 65 99.6 1.2E-14 4.1E-19 85.0 6.9 62 24-92 4-76 (87)
184 4f02_A Polyadenylate-binding p 99.5 2.2E-14 7.6E-19 96.9 8.9 74 25-100 102-176 (213)
185 2cjk_A Nuclear polyadenylated 99.5 1.6E-14 5.6E-19 93.5 7.4 72 25-97 86-158 (167)
186 3zzy_A Polypyrimidine tract-bi 99.5 7.4E-14 2.5E-18 87.7 9.2 78 23-106 25-104 (130)
187 1wf0_A TDP-43, TAR DNA-binding 99.5 1.3E-14 4.4E-19 85.2 5.2 56 24-84 3-58 (88)
188 2diu_A KIAA0430 protein; struc 99.5 2.1E-13 7.2E-18 80.7 9.0 67 25-101 7-80 (96)
189 3tyt_A Heterogeneous nuclear r 99.5 5.4E-14 1.9E-18 94.8 7.2 67 24-92 121-189 (205)
190 2pe8_A Splicing factor 45; RRM 99.5 4.6E-13 1.6E-17 81.3 10.5 81 24-107 6-93 (105)
191 2bz2_A Negative elongation fac 99.5 3E-13 1E-17 84.1 9.3 72 21-100 34-106 (121)
192 3sde_A Paraspeckle component 1 99.5 3.3E-13 1.1E-17 93.7 9.6 67 24-91 94-160 (261)
193 1fje_B Nucleolin RBD12, protei 99.5 3.5E-13 1.2E-17 87.9 8.5 67 22-93 95-161 (175)
194 3u1l_A PRE-mRNA-splicing facto 99.4 3.2E-13 1.1E-17 92.9 7.8 65 23-93 131-204 (240)
195 3pgw_A U1-A; protein-RNA compl 99.4 1.3E-12 4.3E-17 91.4 10.4 66 23-93 204-269 (282)
196 3tht_A Alkylated DNA repair pr 99.4 5.7E-13 2E-17 96.0 7.3 64 23-92 15-80 (345)
197 2dit_A HIV TAT specific factor 99.4 4.9E-12 1.7E-16 77.4 10.5 74 22-99 11-96 (112)
198 1qm9_A Polypyrimidine tract-bi 99.4 9E-12 3.1E-16 82.8 11.9 73 24-101 118-193 (198)
199 2adc_A Polypyrimidine tract-bi 99.3 2E-11 6.8E-16 83.2 11.4 66 24-94 149-215 (229)
200 3v4m_A Splicing factor U2AF 65 99.3 8.9E-12 3E-16 75.6 8.1 77 25-101 4-93 (105)
201 1jmt_A Splicing factor U2AF 35 99.3 2.4E-12 8.1E-17 78.0 4.4 68 31-99 20-100 (104)
202 3ue2_A Poly(U)-binding-splicin 99.3 3.5E-11 1.2E-15 74.4 8.9 79 24-102 18-106 (118)
203 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.1E-10 3.9E-15 70.1 10.1 66 26-97 10-82 (100)
204 2kn4_A Immunoglobulin G-bindin 99.2 5.3E-11 1.8E-15 76.6 6.9 69 55-125 2-140 (158)
205 1owx_A Lupus LA protein, SS-B, 99.2 1.8E-10 6.2E-15 71.3 7.9 68 18-91 10-79 (121)
206 3s6e_A RNA-binding protein 39; 99.0 3.6E-09 1.2E-13 65.0 9.2 76 23-102 4-90 (114)
207 3dxb_A Thioredoxin N-terminall 98.6 3E-07 1E-11 62.1 8.9 64 38-101 141-209 (222)
208 2i2y_A Fusion protein consists 98.5 2.6E-07 8.9E-12 58.8 6.6 63 64-126 9-139 (150)
209 2dnr_A Synaptojanin-1; RRM dom 98.4 5.3E-07 1.8E-11 52.7 5.8 65 24-97 5-78 (91)
210 2lea_A Serine/arginine-rich sp 98.4 1.7E-07 5.7E-12 58.9 3.0 34 93-126 85-118 (135)
211 2krb_A Eukaryotic translation 98.3 8.2E-07 2.8E-11 50.6 4.2 33 93-125 43-75 (81)
212 1ufw_A Synaptojanin 2; RNP dom 98.3 1.8E-06 6.1E-11 50.8 5.1 61 23-92 12-81 (95)
213 3p5t_L Cleavage and polyadenyl 98.2 1E-06 3.6E-11 51.2 3.7 35 93-127 41-75 (90)
214 3ns6_A Eukaryotic translation 98.2 1.9E-06 6.3E-11 51.2 4.6 32 93-124 50-81 (100)
215 4fxv_A ELAV-like protein 1; RN 98.2 1.3E-06 4.5E-11 51.9 3.7 34 93-126 57-90 (99)
216 3s8s_A Histone-lysine N-methyl 98.2 1.3E-06 4.4E-11 53.0 3.6 34 93-126 44-77 (110)
217 2wbr_A GW182, gawky, LD47780P; 98.1 1.4E-06 4.8E-11 50.8 2.5 34 93-126 39-72 (89)
218 1whv_A Poly(A)-specific ribonu 98.1 4.5E-05 1.5E-09 45.0 8.8 59 22-89 12-70 (100)
219 2lkz_A RNA-binding protein 5; 98.1 1.9E-06 6.5E-11 50.9 3.0 29 93-121 49-77 (95)
220 2a3j_A U1 small nuclear ribonu 98.1 4.2E-06 1.4E-10 52.1 4.5 34 93-126 68-101 (127)
221 2la6_A RNA-binding protein FUS 98.1 5.5E-06 1.9E-10 48.9 4.7 34 93-126 59-92 (99)
222 1jmt_A Splicing factor U2AF 35 98.1 3.5E-06 1.2E-10 50.6 3.6 34 93-126 64-97 (104)
223 3pgw_S U1-70K; protein-RNA com 98.0 6E-07 2.1E-11 66.6 -0.1 33 93-125 140-172 (437)
224 2dnz_A Probable RNA-binding pr 98.0 9.7E-06 3.3E-10 47.3 5.1 34 93-126 43-76 (95)
225 2pe8_A Splicing factor 45; RRM 98.0 4.6E-06 1.6E-10 50.2 3.6 33 94-126 53-85 (105)
226 3md1_A Nuclear and cytoplasmic 98.0 5.9E-06 2E-10 47.0 3.7 33 93-125 39-71 (83)
227 2nlw_A Eukaryotic translation 98.0 2.4E-06 8.2E-11 51.1 2.0 33 93-125 57-89 (105)
228 3bs9_A Nucleolysin TIA-1 isofo 98.0 6E-06 2.1E-10 47.4 3.6 33 93-125 44-76 (87)
229 3v4m_A Splicing factor U2AF 65 98.0 6.4E-06 2.2E-10 49.5 3.8 33 94-126 56-88 (105)
230 1p27_B RNA-binding protein 8A; 98.0 1.1E-05 3.8E-10 48.0 4.8 34 93-126 61-94 (106)
231 1x5s_A Cold-inducible RNA-bind 98.0 1.3E-05 4.3E-10 47.4 4.8 34 93-126 50-83 (102)
232 2dgv_A HnRNP M, heterogeneous 98.0 1.3E-05 4.3E-10 46.5 4.7 34 93-126 44-77 (92)
233 2dhg_A TRNA selenocysteine ass 98.0 1.4E-05 4.8E-10 47.4 4.9 34 93-126 47-81 (104)
234 2ek1_A RNA-binding protein 12; 98.0 7.2E-06 2.5E-10 47.8 3.6 33 93-125 53-85 (95)
235 2dnh_A Bruno-like 5, RNA bindi 97.9 1.4E-05 4.6E-10 47.6 4.8 32 93-124 52-83 (105)
236 2cqp_A RNA-binding protein 12; 97.9 7.4E-06 2.5E-10 48.1 3.6 33 93-125 53-85 (98)
237 3mdf_A Peptidyl-prolyl CIS-tra 97.9 7E-06 2.4E-10 46.9 3.4 33 93-125 45-77 (85)
238 2div_A TRNA selenocysteine ass 97.9 8.9E-06 3E-10 47.9 3.9 34 93-126 48-81 (99)
239 2x1f_A MRNA 3'-END-processing 97.9 8.9E-06 3.1E-10 47.7 3.8 33 93-125 40-72 (96)
240 1x5u_A Splicing factor 3B subu 97.9 1.2E-05 4.1E-10 47.8 4.4 34 93-126 53-86 (105)
241 2fc8_A NCL protein; structure 97.9 7.3E-06 2.5E-10 48.5 3.5 33 93-125 50-82 (102)
242 2d9p_A Polyadenylate-binding p 97.9 1.5E-05 5E-10 47.3 4.8 34 93-126 51-84 (103)
243 2fy1_A RNA-binding motif prote 97.9 1.3E-05 4.4E-10 48.9 4.5 34 93-126 44-77 (116)
244 2cpx_A Hypothetical protein FL 97.9 1.4E-05 4.7E-10 48.3 4.5 34 93-126 63-96 (115)
245 1p1t_A Cleavage stimulation fa 97.9 1.1E-05 3.8E-10 47.8 4.0 34 93-126 46-79 (104)
246 1fj7_A Nucleolin RBD1, protein 97.9 9.8E-06 3.4E-10 47.9 3.7 33 93-126 54-86 (101)
247 2dgp_A Bruno-like 4, RNA bindi 97.9 1.9E-05 6.6E-10 47.0 5.1 46 77-122 26-80 (106)
248 2jrs_A RNA-binding protein 39; 97.9 1.6E-05 5.3E-10 47.8 4.7 34 93-126 64-97 (108)
249 1x4e_A RNA binding motif, sing 97.9 5.7E-06 2E-10 47.3 2.6 32 93-124 43-74 (85)
250 1x5t_A Splicing factor 3B subu 97.9 8.4E-06 2.9E-10 47.6 3.4 33 93-125 44-76 (96)
251 2dnm_A SRP46 splicing factor; 97.9 8.9E-06 3E-10 48.3 3.4 34 93-126 51-84 (103)
252 2cpe_A RNA-binding protein EWS 97.9 1.1E-05 3.6E-10 48.7 3.8 33 93-125 61-93 (113)
253 2cph_A RNA binding motif prote 97.9 2E-05 6.8E-10 46.9 5.0 34 93-126 54-88 (107)
254 4f25_A Polyadenylate-binding p 97.9 8.7E-06 3E-10 49.5 3.4 33 93-125 41-73 (115)
255 2j76_E EIF-4B, EIF4B, eukaryot 97.9 1.5E-05 5.1E-10 47.2 4.3 33 93-126 57-89 (100)
256 3n9u_C Cleavage and polyadenyl 97.9 8.9E-06 3.1E-10 52.2 3.6 34 93-126 95-128 (156)
257 2mss_A Protein (musashi1); RNA 97.9 1.4E-05 4.8E-10 44.5 4.0 33 93-126 37-69 (75)
258 2kxn_B Transformer-2 protein h 97.9 2.1E-05 7.2E-10 48.9 5.1 34 93-126 84-117 (129)
259 1whw_A Hypothetical protein ri 97.9 1E-05 3.4E-10 47.6 3.4 33 93-125 46-78 (99)
260 2l9w_A U4/U6 snRNA-associated- 97.9 0.0002 6.8E-09 43.2 8.9 71 24-100 19-95 (117)
261 3ue2_A Poly(U)-binding-splicin 97.9 1E-05 3.5E-10 49.7 3.3 33 94-126 68-100 (118)
262 2cpf_A RNA binding motif prote 97.9 7.9E-06 2.7E-10 48.0 2.7 31 95-125 48-78 (98)
263 2dgs_A DAZ-associated protein 97.9 2.4E-05 8.4E-10 46.0 4.8 33 93-126 48-80 (99)
264 2cq0_A Eukaryotic translation 97.9 1.3E-05 4.6E-10 47.4 3.6 32 93-124 53-84 (103)
265 2do4_A Squamous cell carcinoma 97.9 1.1E-05 3.9E-10 47.5 3.3 33 93-125 54-86 (100)
266 2cpi_A CCR4-NOT transcription 97.8 9E-06 3.1E-10 49.1 2.8 31 95-125 61-91 (111)
267 3ulh_A THO complex subunit 4; 97.8 1.5E-05 5E-10 47.6 3.6 33 93-125 66-98 (107)
268 2dgo_A Cytotoxic granule-assoc 97.8 1.5E-05 5E-10 48.2 3.6 33 93-125 53-85 (115)
269 1oo0_B CG8781-PA, drosophila Y 97.8 1.7E-05 5.7E-10 47.6 3.8 33 93-125 64-96 (110)
270 2e5j_A Methenyltetrahydrofolat 97.8 2E-05 7E-10 46.2 4.1 50 77-126 32-85 (97)
271 2cqc_A Arginine/serine-rich sp 97.8 1E-05 3.5E-10 47.1 2.7 32 93-124 53-84 (95)
272 1x5o_A RNA binding motif, sing 97.8 3.1E-05 1.1E-09 46.7 5.0 32 93-124 62-93 (114)
273 2cpz_A CUG triplet repeat RNA- 97.8 1.5E-05 5.3E-10 48.2 3.5 33 93-125 63-95 (115)
274 2ki2_A SS-DNA binding protein 97.8 2E-05 7E-10 45.4 3.9 34 93-127 39-72 (90)
275 3ex7_B RNA-binding protein 8A; 97.8 2.6E-05 8.9E-10 47.9 4.5 34 93-126 60-93 (126)
276 2lxi_A RNA-binding protein 10; 97.8 1.9E-05 6.4E-10 46.0 3.5 27 93-119 40-66 (91)
277 1s79_A Lupus LA protein; RRM, 97.8 2.5E-05 8.7E-10 46.6 4.1 33 93-126 48-80 (103)
278 2fc9_A NCL protein; structure 97.8 1.2E-05 4.2E-10 47.5 2.7 32 93-124 49-80 (101)
279 2e5h_A Zinc finger CCHC-type a 97.8 1.2E-05 3.9E-10 46.9 2.5 32 93-124 54-85 (94)
280 2ywk_A Putative RNA-binding pr 97.8 1.5E-05 5.1E-10 46.5 3.0 33 93-125 53-85 (95)
281 2dgw_A Probable RNA-binding pr 97.8 1.1E-05 3.8E-10 46.7 2.2 31 93-124 46-76 (91)
282 2lmi_A GRSF-1, G-rich sequence 97.8 2.9E-05 1E-09 46.4 4.1 33 93-126 51-83 (107)
283 1wel_A RNA-binding protein 12; 97.8 1.5E-05 5.3E-10 48.9 2.9 33 93-126 63-95 (124)
284 2cqb_A Peptidyl-prolyl CIS-tra 97.8 1.1E-05 3.7E-10 47.8 2.1 32 93-124 50-81 (102)
285 1fjc_A Nucleolin RBD2, protein 97.8 1E-05 3.4E-10 47.4 1.9 32 93-124 49-80 (96)
286 2dng_A Eukaryotic translation 97.8 1.8E-05 6E-10 47.0 3.0 32 93-125 52-83 (103)
287 2jvr_A Nucleolar protein 3; RN 97.8 1.3E-05 4.6E-10 48.6 2.5 49 77-125 41-95 (111)
288 2cq2_A Hypothetical protein LO 97.7 1.9E-05 6.6E-10 48.2 3.1 46 77-122 40-88 (114)
289 1wez_A HnRNP H', FTP-3, hetero 97.7 2.4E-05 8.4E-10 46.5 3.4 33 93-126 51-83 (102)
290 2do0_A HnRNP M, heterogeneous 97.7 2.8E-05 9.5E-10 46.8 3.7 33 93-125 52-84 (114)
291 4a8x_A RNA-binding protein wit 97.7 2.4E-05 8.3E-10 44.8 3.2 30 96-125 46-75 (88)
292 2m2b_A RNA-binding protein 10; 97.7 2.3E-05 7.8E-10 48.6 3.3 33 93-126 63-99 (131)
293 2dis_A Unnamed protein product 97.7 3.6E-05 1.2E-09 46.0 4.0 32 93-124 48-81 (109)
294 1wg5_A Heterogeneous nuclear r 97.7 4.3E-05 1.5E-09 45.5 4.2 32 93-125 53-84 (104)
295 2khc_A Testis-specific RNP-typ 97.7 1.8E-05 6.1E-10 48.1 2.5 34 93-126 78-111 (118)
296 1nu4_A U1A RNA binding domain; 97.7 1.2E-05 4E-10 47.1 1.6 33 93-125 47-79 (97)
297 3egn_A RNA-binding protein 40; 97.7 2.2E-05 7.4E-10 49.4 2.9 33 93-125 88-120 (143)
298 2dnn_A RNA-binding protein 12; 97.7 1.7E-05 6E-10 47.9 2.4 31 93-124 52-82 (109)
299 2kt5_A RNA and export factor-b 97.7 3E-05 1E-09 47.5 3.5 33 93-125 72-104 (124)
300 2diu_A KIAA0430 protein; struc 97.7 4.9E-05 1.7E-09 44.8 4.2 30 98-127 47-76 (96)
301 1u6f_A Tcubp1, RNA-binding pro 97.7 2.4E-05 8E-10 48.9 3.0 49 77-125 55-112 (139)
302 1x4a_A Splicing factor, argini 97.7 3.1E-05 1.1E-09 46.4 3.4 33 93-125 57-89 (109)
303 3lqv_A PRE-mRNA branch site pr 97.7 5.4E-05 1.9E-09 45.6 4.4 34 93-126 43-76 (115)
304 1wi8_A EIF-4B, eukaryotic tran 97.7 2.9E-05 1E-09 46.1 3.1 31 94-125 54-84 (104)
305 3ucg_A Polyadenylate-binding p 97.7 2.4E-05 8.1E-10 45.0 2.6 32 93-125 44-75 (89)
306 1x4h_A RNA-binding protein 28; 97.7 3.9E-05 1.3E-09 45.9 3.6 32 93-124 53-90 (111)
307 1whx_A Hypothetical protein ri 97.7 5.6E-05 1.9E-09 45.6 4.3 35 93-127 42-76 (111)
308 1wg1_A KIAA1579 protein, homol 97.6 1.8E-05 6.1E-10 45.6 1.9 31 95-125 38-68 (88)
309 2bz2_A Negative elongation fac 97.6 6.3E-05 2.2E-09 46.2 4.4 34 93-126 69-102 (121)
310 2dnl_A Cytoplasmic polyadenyla 97.6 2.7E-05 9.3E-10 47.1 2.5 29 94-122 49-80 (114)
311 3q2s_C Cleavage and polyadenyl 97.6 3.1E-05 1E-09 52.7 3.0 35 93-127 108-142 (229)
312 2cpj_A Non-POU domain-containi 97.6 5.9E-05 2E-09 44.3 3.7 34 93-126 47-80 (99)
313 1uaw_A Mouse-musashi-1; RNP-ty 97.6 4.2E-05 1.4E-09 42.7 2.9 31 93-124 38-68 (77)
314 2kvi_A Nuclear polyadenylated 97.6 9.5E-05 3.3E-09 43.2 4.6 31 96-126 44-74 (96)
315 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.6 2.7E-05 9.4E-10 48.4 2.3 32 93-124 101-132 (140)
316 2dit_A HIV TAT specific factor 97.6 4.4E-05 1.5E-09 46.1 3.1 33 93-125 60-92 (112)
317 2err_A Ataxin-2-binding protei 97.6 3.6E-05 1.2E-09 46.2 2.7 33 93-125 65-97 (109)
318 2hgl_A HNRPF protein, heteroge 97.6 2.2E-05 7.7E-10 49.3 1.8 32 93-125 84-115 (136)
319 2la4_A Nuclear and cytoplasmic 97.6 5E-05 1.7E-09 44.7 3.3 81 34-125 7-91 (101)
320 2dnq_A RNA-binding protein 4B; 97.6 9.9E-05 3.4E-09 42.5 4.5 30 97-126 42-71 (90)
321 2cq3_A RNA-binding protein 9; 97.6 6.5E-05 2.2E-09 44.4 3.8 32 94-125 52-83 (103)
322 1x5p_A Negative elongation fac 97.6 3.7E-05 1.3E-09 45.1 2.6 32 93-124 45-76 (97)
323 1h2v_Z 20 kDa nuclear CAP bind 97.6 5.4E-05 1.8E-09 48.2 3.6 33 93-125 77-109 (156)
324 1rk8_A CG8781-PA, CG8781-PA pr 97.6 5.8E-05 2E-09 48.6 3.6 33 93-125 110-142 (165)
325 3ctr_A Poly(A)-specific ribonu 97.6 0.00021 7.3E-09 42.2 5.6 55 27-90 7-61 (101)
326 2cqi_A Nucleolysin TIAR; RNA r 97.6 4.7E-05 1.6E-09 45.0 2.9 48 77-124 28-82 (103)
327 2db1_A Heterogeneous nuclear r 97.6 2.4E-05 8.1E-10 47.8 1.6 31 93-124 57-87 (118)
328 3s6e_A RNA-binding protein 39; 97.6 4.4E-05 1.5E-09 46.5 2.7 33 94-126 52-84 (114)
329 2jwn_A Embryonic polyadenylate 97.5 5.7E-05 1.9E-09 46.2 3.1 32 93-125 74-105 (124)
330 2hvz_A Splicing factor, argini 97.5 6.9E-05 2.4E-09 44.1 3.4 31 96-126 36-66 (101)
331 1why_A Hypothetical protein ri 97.5 0.00011 3.7E-09 43.0 4.1 29 95-123 51-79 (97)
332 2dgx_A KIAA0430 protein; RRM d 97.5 3.8E-05 1.3E-09 45.0 2.1 29 97-125 52-80 (96)
333 2lcw_A RNA-binding protein FUS 96.7 1.3E-05 4.5E-10 48.6 0.0 35 92-126 52-86 (116)
334 2hzc_A Splicing factor U2AF 65 97.5 6.4E-05 2.2E-09 42.9 2.9 32 93-125 49-80 (87)
335 2cqh_A IGF-II mRNA-binding pro 97.5 5.6E-05 1.9E-09 43.8 2.6 48 77-124 21-72 (93)
336 2cq4_A RNA binding motif prote 97.5 2.9E-05 9.9E-10 46.9 1.3 31 93-124 63-93 (114)
337 3dxb_A Thioredoxin N-terminall 97.5 0.00013 4.6E-09 48.9 4.8 35 93-127 171-205 (222)
338 2f3j_A RNA and export factor b 97.5 0.00013 4.4E-09 47.7 4.4 50 77-126 101-158 (177)
339 2xnq_A Nuclear polyadenylated 97.5 9.3E-05 3.2E-09 43.5 3.3 30 96-125 56-85 (97)
340 1iqt_A AUF1, heterogeneous nuc 97.5 7.3E-05 2.5E-09 41.5 2.6 33 93-126 37-69 (75)
341 1uw4_A UPF3X; nonsense mediate 97.5 0.0014 4.9E-08 38.2 8.2 66 27-92 2-69 (91)
342 2dhx_A Poly (ADP-ribose) polym 97.4 0.0017 5.9E-08 38.6 8.4 57 23-87 5-66 (104)
343 3beg_B Splicing factor, argini 97.4 0.0002 6.8E-09 43.3 4.5 29 98-126 52-80 (115)
344 2cqd_A RNA-binding region cont 97.4 7.3E-05 2.5E-09 45.2 2.5 27 93-119 55-81 (116)
345 1sjr_A Polypyrimidine tract-bi 97.4 0.00015 5.1E-09 46.9 4.1 32 93-124 80-111 (164)
346 2ytc_A PRE-mRNA-splicing facto 97.4 0.00011 3.8E-09 41.7 3.1 32 94-125 45-77 (85)
347 2jvo_A Nucleolar protein 3; nu 97.4 0.00012 3.9E-09 44.0 3.2 29 97-125 65-93 (108)
348 1x4g_A Nucleolysin TIAR; struc 97.4 0.00013 4.5E-09 43.6 3.4 49 77-125 38-89 (109)
349 3r27_A HnRNP L, heterogeneous 97.4 9.1E-05 3.1E-09 44.1 2.6 28 94-121 54-81 (100)
350 2cpd_A Apobec-1 stimulating pr 97.4 8.8E-05 3E-09 43.5 2.5 48 77-124 28-78 (99)
351 1x4f_A Matrin 3; structural ge 97.4 0.00015 5.1E-09 44.0 3.5 28 93-120 58-85 (112)
352 2dha_A FLJ20171 protein; RRM d 97.4 5.8E-05 2E-09 46.6 1.6 30 93-123 64-93 (123)
353 2hgn_A Heterogeneous nuclear r 97.4 6.6E-05 2.3E-09 47.3 1.8 33 93-126 82-114 (139)
354 3s7r_A Heterogeneous nuclear r 97.4 8.3E-05 2.8E-09 42.5 2.1 27 93-120 49-75 (87)
355 2hgm_A HNRPF protein, heteroge 97.4 0.00013 4.3E-09 45.3 3.0 32 93-125 80-111 (126)
356 2cpy_A RNA-binding protein 12; 97.4 4.9E-05 1.7E-09 46.0 1.1 31 93-124 53-83 (114)
357 1wwh_A Nucleoporin 35, nucleop 97.3 0.0016 5.5E-08 39.8 7.6 89 14-110 12-100 (119)
358 1wf1_A RNA-binding protein RAL 97.3 0.00012 4E-09 43.9 2.5 49 77-125 41-90 (110)
359 2dh8_A DAZ-associated protein 97.3 8.9E-05 3E-09 44.0 1.8 30 93-123 54-83 (105)
360 1wex_A Hypothetical protein (r 97.3 0.00024 8.1E-09 42.5 3.6 27 95-121 49-75 (104)
361 2dnp_A RNA-binding protein 14; 97.3 0.00018 6.3E-09 41.4 3.0 49 77-125 22-71 (90)
362 3zzy_A Polypyrimidine tract-bi 97.3 0.00022 7.6E-09 44.4 3.5 30 95-124 63-93 (130)
363 2d9o_A DNAJ (HSP40) homolog, s 97.3 0.00023 7.9E-09 42.3 3.3 27 93-119 50-76 (100)
364 2dgt_A RNA-binding protein 30; 97.2 0.00018 6.1E-09 41.6 2.5 48 77-124 23-71 (92)
365 2dgu_A Heterogeneous nuclear r 97.2 0.00014 4.8E-09 43.0 2.1 48 77-124 24-72 (103)
366 1x4d_A Matrin 3; structural ge 97.2 0.00016 5.5E-09 43.1 2.3 29 93-121 48-76 (102)
367 2cqg_A TDP-43, TAR DNA-binding 97.2 0.0002 6.7E-09 42.3 2.7 24 93-116 53-76 (103)
368 2e5i_A Heterogeneous nuclear r 97.2 0.00039 1.3E-08 42.9 4.0 28 97-124 61-89 (124)
369 3tht_A Alkylated DNA repair pr 97.2 0.00026 9E-09 51.0 3.6 47 77-123 33-82 (345)
370 1x4c_A Splicing factor, argini 97.2 0.00024 8.2E-09 42.4 2.8 27 98-124 51-77 (108)
371 1sjq_A Polypyrimidine tract-bi 97.2 0.0004 1.4E-08 41.6 3.6 25 95-119 50-74 (105)
372 1x4b_A Heterogeneous nuclear r 97.2 0.00014 4.7E-09 43.9 1.6 30 93-123 65-94 (116)
373 3u1l_A PRE-mRNA-splicing facto 97.1 0.0006 2E-08 46.8 4.7 30 93-122 175-204 (240)
374 2rs2_A Musashi-1, RNA-binding 97.1 0.00037 1.3E-08 41.7 2.9 25 93-117 63-87 (109)
375 2xs2_A Deleted in azoospermia- 97.1 6.8E-05 2.3E-09 44.2 -0.5 30 93-122 46-78 (102)
376 2cq1_A PTB-like protein L; RRM 97.1 0.00035 1.2E-08 41.5 2.6 25 95-119 49-73 (101)
377 2ad9_A Polypyrimidine tract-bi 97.0 0.00083 2.8E-08 41.1 4.1 25 95-119 65-89 (119)
378 2e44_A Insulin-like growth fac 96.9 0.002 6.7E-08 37.3 4.9 32 95-126 52-83 (96)
379 2e5g_A U6 snRNA-specific termi 96.7 0.0012 4E-08 38.2 2.9 26 99-125 47-72 (94)
380 2j8a_A Histone-lysine N-methyl 96.5 0.00054 1.8E-08 42.7 0.6 33 93-125 44-86 (136)
381 2l08_A Regulator of nonsense t 96.5 0.01 3.6E-07 34.9 6.1 81 25-105 8-93 (97)
382 2voo_A Lupus LA protein; RNA-b 96.2 0.0039 1.3E-07 41.1 3.3 26 93-118 146-171 (193)
383 1wey_A Calcipressin 1; structu 95.8 0.022 7.4E-07 33.9 5.1 72 25-102 4-81 (104)
384 3pq1_A Poly(A) RNA polymerase; 95.7 0.0078 2.7E-07 45.0 3.4 55 26-86 53-107 (464)
385 2dnr_A Synaptojanin-1; RRM dom 95.2 0.0069 2.4E-07 35.2 1.3 27 98-125 50-76 (91)
386 3d2w_A TAR DNA-binding protein 95.2 0.019 6.5E-07 32.8 3.2 19 94-112 45-63 (89)
387 1ufw_A Synaptojanin 2; RNP dom 94.8 0.0099 3.4E-07 34.8 1.3 26 99-125 60-85 (95)
388 3d45_A Poly(A)-specific ribonu 93.9 0.37 1.3E-05 36.4 8.5 58 25-91 439-496 (507)
389 1wf0_A TDP-43, TAR DNA-binding 93.3 0.025 8.4E-07 32.0 0.9 20 94-113 39-58 (88)
390 3p3d_A Nucleoporin 53; structu 89.8 0.24 8.3E-06 30.6 2.7 77 25-104 6-96 (132)
391 1owx_A Lupus LA protein, SS-B, 87.4 1.1 3.6E-05 27.3 4.4 28 95-122 53-81 (121)
392 2l9w_A U4/U6 snRNA-associated- 69.6 2.7 9.3E-05 25.2 2.0 29 97-125 62-90 (117)
393 4e8u_A Putative uncharacterize 48.7 51 0.0017 21.2 7.3 58 26-86 12-81 (172)
394 3fut_A Dimethyladenosine trans 38.7 32 0.0011 23.5 3.5 34 27-61 111-144 (271)
395 3uzu_A Ribosomal RNA small sub 34.4 14 0.00047 25.5 1.1 35 27-61 115-149 (279)
396 3h7h_B Transcription elongatio 31.7 34 0.0012 20.0 2.4 27 66-92 49-75 (106)
397 1qyr_A KSGA, high level kasuga 28.4 61 0.0021 21.7 3.5 33 28-60 92-124 (252)
398 3lpe_A Putative transcription 26.3 53 0.0018 18.4 2.5 24 67-90 49-72 (92)
399 3tqs_A Ribosomal RNA small sub 26.0 20 0.00068 24.2 0.7 33 29-61 99-131 (255)
400 2g1d_A 30S ribosomal protein S 25.9 37 0.0013 19.6 1.8 46 36-82 29-79 (98)
401 3j21_T 50S ribosomal protein L 24.4 1E+02 0.0035 17.3 5.3 56 28-86 24-81 (86)
402 3ftd_A Dimethyladenosine trans 24.4 66 0.0022 21.5 3.1 34 27-60 96-129 (249)
403 2l69_A Rossmann 2X3 fold prote 24.1 1.1E+02 0.0038 17.6 4.0 50 68-117 51-120 (134)
404 1xn9_A 30S ribosomal protein S 23.6 1.2E+02 0.0039 17.6 6.2 48 36-84 28-80 (101)
405 1ywx_A 30S ribosomal protein S 23.3 1.2E+02 0.004 17.6 5.9 46 36-82 28-78 (102)
406 2knz_A Ubiquilin-4; cytoplasm, 23.1 63 0.0022 16.1 2.2 16 104-119 23-38 (53)
407 2bwb_A Ubiquitin-like protein 22.2 71 0.0024 15.4 2.2 16 104-119 19-34 (46)
408 1ytr_A Bacteriocin plantaricin 22.1 56 0.0019 13.5 1.5 12 40-51 14-25 (26)
409 2jy5_A Ubiquilin-1; UBA, alter 21.0 75 0.0026 15.7 2.2 16 104-119 24-39 (52)
410 1i4w_A Mitochondrial replicati 20.8 58 0.002 23.3 2.3 22 28-49 144-165 (353)
411 2v94_A RPS24, 30S ribosomal pr 20.5 1.4E+02 0.0048 17.4 5.8 47 36-83 37-88 (107)
412 3k6g_D Telomeric repeat-bindin 20.5 26 0.0009 16.8 0.3 18 108-125 25-42 (42)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=3.1e-25 Score=150.51 Aligned_cols=102 Identities=26% Similarity=0.347 Sum_probs=93.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
.+.++|||+|||+++++++|+++|.+||+|.++.++.++.+++++|||||+|.+.++|.+|++.+++..
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 356899999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ----------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 ----------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ----------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.+.+++||||+|.+.++|++|+..|||..+...
T Consensus 93 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 93 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 456799999999999999999999999876544
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.91 E-value=1.9e-23 Score=135.69 Aligned_cols=101 Identities=29% Similarity=0.482 Sum_probs=94.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-------------
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------------- 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------------- 92 (128)
.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|++.+++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999998899999999999999999999999999865
Q ss_pred --------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 --------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 --------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++++||+|.+.++|++|+..|||..+..+.
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 5778999999999999999999999998876543
No 3
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.91 E-value=1e-23 Score=138.06 Aligned_cols=99 Identities=27% Similarity=0.393 Sum_probs=92.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhcCcc----------
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETD--RSTGFGFVTMSTVEEAEKVVEMFNRYE---------- 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~---------- 92 (128)
+.++|||+|||+++++++|+++|.+||.|.++.++.++.++ +++|||||+|.+.++|..|++.+++..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998776 899999999999999999999998854
Q ss_pred --------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q 040490 93 --------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQAR 122 (128)
Q Consensus 93 --------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~ 122 (128)
.+++++|+||+|.+.++|++|+..|||..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 678899999999999999999999999876
Q ss_pred c
Q 040490 123 I 123 (128)
Q Consensus 123 ~ 123 (128)
.
T Consensus 162 ~ 162 (175)
T 3nmr_A 162 M 162 (175)
T ss_dssp C
T ss_pred c
Confidence 5
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.91 E-value=1.3e-24 Score=146.79 Aligned_cols=103 Identities=20% Similarity=0.362 Sum_probs=93.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
.+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.+++..
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 456899999999999999999999999999999999998899999999999999999999999998764
Q ss_pred ---------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHH
Q 040490 93 ---------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIA 115 (128)
Q Consensus 93 ---------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~ 115 (128)
++++++|+||+|.+.++|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 57889999999999999999999
Q ss_pred HhcCCCccCCC
Q 040490 116 ALDGQARILPH 126 (128)
Q Consensus 116 ~~~g~~~~~~~ 126 (128)
.|||..+....
T Consensus 186 ~l~g~~~~g~~ 196 (216)
T 2qfj_A 186 SMNLFDLGGQY 196 (216)
T ss_dssp HHTTCBCSSSB
T ss_pred HccCCEeCCcE
Confidence 99998776554
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.91 E-value=2.1e-23 Score=135.84 Aligned_cols=100 Identities=22% Similarity=0.388 Sum_probs=93.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc------------
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------------ 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------------ 92 (128)
+.++|||+|||+++++++|+++|..||.|.++.++.++.++.++|||||+|.+.++|..|++.+++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999875
Q ss_pred ---------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 ---------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ---------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++++||+|.+.++|.+|+..|||..+..
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 57788999999999999999999999987754
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.89 E-value=1.2e-22 Score=135.28 Aligned_cols=103 Identities=31% Similarity=0.495 Sum_probs=90.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc------
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------ 92 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------ 92 (128)
++.++.+.++|||+|||+++++++|+++|..||.|.++.++.++.++.++|||||+|.+.++|..|++. ++..
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 344566789999999999999999999999999999999999999999999999999999999999985 4332
Q ss_pred ---------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHH
Q 040490 93 ---------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIA 115 (128)
Q Consensus 93 ---------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~ 115 (128)
++++++|+||+|.+.++|.+|+.
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 57889999999999999999998
Q ss_pred HhcCCCcc
Q 040490 116 ALDGQARI 123 (128)
Q Consensus 116 ~~~g~~~~ 123 (128)
. +|..+.
T Consensus 165 ~-~~~~~~ 171 (196)
T 1l3k_A 165 Q-KYHTVN 171 (196)
T ss_dssp C-SCCEET
T ss_pred h-CCcEEC
Confidence 5 565443
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.89 E-value=3.9e-23 Score=134.51 Aligned_cols=100 Identities=27% Similarity=0.442 Sum_probs=89.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH---hcCcc---------
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM---FNRYE--------- 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~---l~~~~--------- 92 (128)
+.++|||+|||+++++++|+++|..||.|.++.++.++.++.++|||||+|.+.++|..|++. +++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 568999999999999999999999999999999999998999999999999999999999996 33322
Q ss_pred -------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 -------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 -------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+++++||+||+|.+.++|++|+. ++|..+..+
T Consensus 82 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 82 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 57889999999999999999998 777665543
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1e-22 Score=132.13 Aligned_cols=98 Identities=21% Similarity=0.464 Sum_probs=89.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--------------
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-------------- 92 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-------------- 92 (128)
++|||+|||+++++++|+++|.+||.|.++.++.++ +++++|||||+|.+.++|..|++.+++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999986 47799999999999999999999999876
Q ss_pred ---------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 ---------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ---------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++++||+|.+.++|.+|+..|||..+...
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 578899999999999999999999999876543
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.85 E-value=2e-20 Score=131.35 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=94.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
+..++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.+++..
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 456899999999999999999999999999999999999899999999999999999999999999865
Q ss_pred -------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 93 -------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 93 -------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
+|++++++||+|.+.++|.+|+..|||..+.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 6788999999999999999999999998775
Q ss_pred CC
Q 040490 124 LP 125 (128)
Q Consensus 124 ~~ 125 (128)
..
T Consensus 253 g~ 254 (284)
T 3smz_A 253 GS 254 (284)
T ss_dssp TE
T ss_pred Ce
Confidence 44
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.84 E-value=1e-21 Score=128.80 Aligned_cols=103 Identities=20% Similarity=0.300 Sum_probs=88.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--------
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-------- 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-------- 92 (128)
.++.+.++|||+|||+++++++|+++|..+|.+.. .++.+..++.++|||||+|.+.++|.+|++ +++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 45677899999999999999999999999987655 334445678899999999999999999995 88765
Q ss_pred ----------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 ----------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ----------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++++||+|.+.++|.+|+..|||..+..+
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 578899999999999999999999998766543
No 11
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=6.6e-20 Score=113.20 Aligned_cols=87 Identities=25% Similarity=0.389 Sum_probs=74.6
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 040490 6 IGGEESFGDGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85 (128)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 85 (128)
++|+...............+.++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|++|+
T Consensus 5 ~~g~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (115)
T 2cpz_A 5 SSGLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 84 (115)
T ss_dssp CCCCCCCCCCCBSCCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHH
T ss_pred CCCccccccCcCccCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHH
Confidence 33444343334444556667899999999999999999999999999999999999989999999999999999999999
Q ss_pred HHhcCcc
Q 040490 86 EMFNRYE 92 (128)
Q Consensus 86 ~~l~~~~ 92 (128)
+.|++..
T Consensus 85 ~~l~g~~ 91 (115)
T 2cpz_A 85 QSMNGFQ 91 (115)
T ss_dssp HHHTTCE
T ss_pred HHcCCCE
Confidence 9999876
No 12
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.84 E-value=5.5e-20 Score=128.11 Aligned_cols=98 Identities=23% Similarity=0.334 Sum_probs=86.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-------
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------- 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------- 92 (128)
.......++|||+|||+++++++|+++|..||.|..+.+..+ +|||||.|.+.++|..|+..+++..
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 344456789999999999999999999999999999988543 7899999999999999999999875
Q ss_pred -------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 93 -------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 93 -------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
+|++++||||+|.+.++|.+|+..||+..+.
T Consensus 90 v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 90 IRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp EEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred eeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 7889999999999999999999999654444
No 13
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=109.81 Aligned_cols=74 Identities=26% Similarity=0.426 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
.++++|||+|||+++++++|+++|.+||.|.++.++.++.++.++|||||+|.+.++|.+|++.|++.. .|+..
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 356899999999999999999999999999999999999999999999999999999999999999886 34433
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.82 E-value=7.1e-20 Score=119.54 Aligned_cols=94 Identities=27% Similarity=0.491 Sum_probs=82.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQA----G-------VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE- 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~- 92 (128)
+.++|||+|||+++++++|+++|.+| | .|.++.+. .++|||||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 56666554 34799999999999999999 788865
Q ss_pred --------------------------------------------------------cCCcccEEEEEeCCHHHHHHHHHH
Q 040490 93 --------------------------------------------------------TGCSHGFGFFTMSDESKLNDAIAA 116 (128)
Q Consensus 93 --------------------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~ 116 (128)
++++++++||+|.+.++|++|+..
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 677899999999999999999999
Q ss_pred hcCCCccCC
Q 040490 117 LDGQARILP 125 (128)
Q Consensus 117 ~~g~~~~~~ 125 (128)
|||..+..+
T Consensus 156 l~g~~~~g~ 164 (172)
T 2g4b_A 156 LNGMQLGDK 164 (172)
T ss_dssp HTTCEETTE
T ss_pred cCCCEECCe
Confidence 999877544
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.82 E-value=2.4e-19 Score=121.15 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=55.2
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 040490 25 EDAKLFVGNLR-YDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89 (128)
Q Consensus 25 ~~~~l~v~nL~-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 89 (128)
+.++|||+||| +.+++++|+++|.+||.|.++.++.+ .+|||||+|.+.++|..|++.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~ln 63 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLN 63 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhC
Confidence 56899999999 89999999999999999999998765 37999999999999999999775
No 16
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=1e-18 Score=107.33 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEE
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFG 100 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~ 100 (128)
++.++|||+|||+++++++|+++|.+||.|.++.++.++.|++++|||||+|.+.++|++|++.||+.. .|+...+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999987 56555443
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.81 E-value=1.8e-19 Score=126.84 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=83.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-------
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------- 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------- 92 (128)
.......++|||+|||+++++++|+++|..||.|..+.++.++.+ ++|||||+|.+.++|.+|++ +++..
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 344567899999999999999999999999999999999998643 47999999999999999995 77654
Q ss_pred -------------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 -------------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 -------------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.+++++|+||+|.+.++|.+|+..|+|..+..
T Consensus 112 v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 112 VSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp EEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred EEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34689999999999999999999999987654
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.81 E-value=3e-19 Score=125.27 Aligned_cols=94 Identities=26% Similarity=0.371 Sum_probs=84.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
.+.++|||+|||+++++++|+++|..|| |..+.+ ++++|||||+|.+.++|..|++.+++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3568999999999999999999999999 888876 4568899999999999999999999875
Q ss_pred ----------------------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 ----------------------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ----------------------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|.+|+..|+|..+..
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 67889999999999999999999999976644
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.80 E-value=8.8e-19 Score=119.84 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=86.5
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--------
Q 040490 22 EPPEDAKLFVGNLRY-DVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-------- 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-------- 92 (128)
..++.++|||+|||+ ++++++|+++|.+||.|.++.++.++ +|||||+|.+.++|.+|++.+++..
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345679999999999 99999999999999999999998875 7899999999999999999887643
Q ss_pred ----------------------------------------------------------------------c---------
Q 040490 93 ----------------------------------------------------------------------T--------- 93 (128)
Q Consensus 93 ----------------------------------------------------------------------~--------- 93 (128)
.
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 1
Q ss_pred -CCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 94 -GCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 94 -~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
.+.++++||+|.+.++|++|+..|||..+.
T Consensus 185 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 185 FQKDRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CSSSTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EECCCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 336789999999999999999999998876
No 20
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=103.84 Aligned_cols=72 Identities=25% Similarity=0.400 Sum_probs=67.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..+.+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 81 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 445677899999999999999999999999999999999999999999999999999999999999999876
No 21
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=103.75 Aligned_cols=72 Identities=19% Similarity=0.410 Sum_probs=67.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...++.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 82 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ 82 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe
Confidence 345577899999999999999999999999999999999999899999999999999999999999999876
No 22
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=4.1e-18 Score=102.47 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=70.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 040490 18 VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEI--------SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89 (128)
Q Consensus 18 ~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 89 (128)
.....+...++|||+|||+++++++|+++|.+||.|.. +.++.++.+++++|||||+|.+.++|.+|++.|+
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34456677899999999999999999999999999999 9999999899999999999999999999999999
Q ss_pred Ccc-cCCc
Q 040490 90 RYE-TGCS 96 (128)
Q Consensus 90 ~~~-~~~~ 96 (128)
+.. .|+.
T Consensus 85 g~~~~g~~ 92 (99)
T 2la6_A 85 GKEFSGNP 92 (99)
T ss_dssp TCBSSSSB
T ss_pred CCEeCCcE
Confidence 986 3443
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=105.36 Aligned_cols=73 Identities=32% Similarity=0.448 Sum_probs=68.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..+....++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK 81 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 3456678999999999999999999999999999999999998899999999999999999999999999876
No 24
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=2.9e-18 Score=105.72 Aligned_cols=73 Identities=22% Similarity=0.377 Sum_probs=68.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..+..+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 81 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3455678999999999999999999999999999999999998899999999999999999999999999876
No 25
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=106.51 Aligned_cols=79 Identities=32% Similarity=0.435 Sum_probs=70.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSH 97 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 97 (128)
......+.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.+++...++..
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 3445667899999999999999999999999999999999999989999999999999999999999999885455444
No 26
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4e-18 Score=102.63 Aligned_cols=73 Identities=22% Similarity=0.408 Sum_probs=67.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......+.++|||+|||+++++++|+++|..||.|..+.++.++ +++++|||||+|.+.++|.+|++.|++..
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 82 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMT 82 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456678999999999999999999999999999999999997 89999999999999999999999999876
No 27
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.6e-18 Score=104.28 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=68.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
......+.++|||+|||+++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|++...
T Consensus 18 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 18 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred hcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 33455678999999999999999999999999999999999998 899999999999999999999999999873
No 28
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=104.53 Aligned_cols=72 Identities=22% Similarity=0.363 Sum_probs=67.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+..+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.|++..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG 81 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe
Confidence 345678999999999999999999999999999999999999899999999999999999999999999876
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-18 Score=103.70 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=72.0
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCC
Q 040490 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGC 95 (128)
Q Consensus 17 ~~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~ 95 (128)
.+.+....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++.. .|+
T Consensus 14 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 14 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp -CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 3344445677899999999999999999999999999999999999999999999999999999999999999986 444
Q ss_pred cccE
Q 040490 96 SHGF 99 (128)
Q Consensus 96 ~~~~ 99 (128)
...+
T Consensus 94 ~l~V 97 (106)
T 1p27_B 94 PISV 97 (106)
T ss_dssp BCEE
T ss_pred EEEE
Confidence 4433
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=4.4e-19 Score=106.30 Aligned_cols=71 Identities=14% Similarity=0.280 Sum_probs=65.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGV--VEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....-.+|||+|||+++|+++|+++|.+||. +.++.+++++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 3456679999999999999999999999995 6789999999999999999999999999999999999864
No 31
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.78 E-value=7.6e-19 Score=116.96 Aligned_cols=94 Identities=27% Similarity=0.501 Sum_probs=80.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQA----G-------VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE- 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~- 92 (128)
..++|||+|||+++++++|+++|..| | .|..+.+ +.++|||||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 4555543 355899999999999999999 787753
Q ss_pred ----------------------------------------------------------------------------cCCc
Q 040490 93 ----------------------------------------------------------------------------TGCS 96 (128)
Q Consensus 93 ----------------------------------------------------------------------------~~~~ 96 (128)
++++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 5777
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 97 HGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 97 ~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++|+||+|.+.++|++|+..|||..+...
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 184 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDK 184 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTE
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 99999999999999999999999876543
No 32
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-18 Score=105.20 Aligned_cols=70 Identities=27% Similarity=0.446 Sum_probs=66.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 89 (128)
.....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 3456678899999999999999999999999999999999999999999999999999999999999998
No 33
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.5e-18 Score=103.10 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=69.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh-cCcc-cCC
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY-RETDRSTGFGFVTMSTVEEAEKVVEMF-NRYE-TGC 95 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~-~~~ 95 (128)
........++|||+|||+++++++|+++|..||.|..+.++.+ +.++.++|||||+|.+.++|.+|++.| ++.. .|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3445667899999999999999999999999999999999998 788999999999999999999999999 7766 344
Q ss_pred cc
Q 040490 96 SH 97 (128)
Q Consensus 96 ~~ 97 (128)
..
T Consensus 88 ~l 89 (107)
T 2cph_A 88 RL 89 (107)
T ss_dssp BC
T ss_pred EE
Confidence 33
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=7.2e-18 Score=102.31 Aligned_cols=70 Identities=29% Similarity=0.411 Sum_probs=65.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....++|||+|||+++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|++..
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 80 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQ 80 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCc
Confidence 34568999999999999999999999999999999999997 79999999999999999999999999986
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.7e-18 Score=105.24 Aligned_cols=72 Identities=25% Similarity=0.344 Sum_probs=67.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQK 79 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCc
Confidence 455677999999999999999999999999999999999999899999999999999999999999999965
No 36
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=103.14 Aligned_cols=75 Identities=24% Similarity=0.358 Sum_probs=68.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCee-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVE-ISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCS 96 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~ 96 (128)
.....++|||+|||+++++++|+++|.+||.|. .+.++.++.++.++|||||+|.+.++|++|++.|++.. .++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 345679999999999999999999999999999 99999999999999999999999999999999999876 4444
No 37
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.2e-18 Score=102.10 Aligned_cols=81 Identities=31% Similarity=0.532 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEE
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFG 100 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~ 100 (128)
...+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++.. .++...+.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999986 45555444
Q ss_pred EE
Q 040490 101 FF 102 (128)
Q Consensus 101 fv 102 (128)
+.
T Consensus 88 ~a 89 (102)
T 1x5s_A 88 QA 89 (102)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7.4e-18 Score=101.29 Aligned_cols=76 Identities=26% Similarity=0.480 Sum_probs=68.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++ +++.. .|+..
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 445677999999999999999999999999999999999999899999999999999999999998 88876 34443
No 39
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.77 E-value=7.3e-18 Score=118.09 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=59.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLA----HLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
.+..+.++|||+|||+++++++|+ ++|..||.|.++.++. +++++|||||+|.+.++|.+|++.|++
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g 74 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG 74 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 456678999999999999999977 8999999999998775 678999999999999999999987764
No 40
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.77 E-value=1.4e-18 Score=122.27 Aligned_cols=98 Identities=14% Similarity=0.240 Sum_probs=83.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAG-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
..++|||+|||+++++++|+++|..|| .|..+.++.++. +.++|||||.|.+.++|..|++.|++..
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999988864 7889999999999999999999888754
Q ss_pred -----------------------------------------------------c--CCcccEEEEEeCCHHHHHHHHHHh
Q 040490 93 -----------------------------------------------------T--GCSHGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 93 -----------------------------------------------------~--~~~~~~~fv~f~~~~~a~~a~~~~ 117 (128)
. +++++|+||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 2 888999999999999999999 99
Q ss_pred cCCCccC
Q 040490 118 DGQARIL 124 (128)
Q Consensus 118 ~g~~~~~ 124 (128)
||..+..
T Consensus 274 ~g~~~~g 280 (292)
T 2ghp_A 274 NRSLLGN 280 (292)
T ss_dssp TTEEETT
T ss_pred cCCEECC
Confidence 9987654
No 41
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=114.71 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=84.0
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-----------
Q 040490 25 EDAKLFVGNLRY-DVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE----------- 92 (128)
Q Consensus 25 ~~~~l~v~nL~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----------- 92 (128)
+.++|||+|||+ ++++++|+++|..||.|..+.++.++ +|||||+|.+.++|..|++.|++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999888764 7899999999999999999887643
Q ss_pred -------------------------------------------------------------------c----------CC
Q 040490 93 -------------------------------------------------------------------T----------GC 95 (128)
Q Consensus 93 -------------------------------------------------------------------~----------~~ 95 (128)
. ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 1 22
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 96 SHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 96 ~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
.++++||+|.+.++|.+|+..|||..+.
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 5789999999999999999999998876
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=7.1e-18 Score=98.95 Aligned_cols=73 Identities=23% Similarity=0.369 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCS 96 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~ 96 (128)
.+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|++.|++.. .|+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 457899999999999999999999999999999999998899999999999999999999999999876 3433
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=3.9e-18 Score=107.50 Aligned_cols=73 Identities=25% Similarity=0.387 Sum_probs=68.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....+.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~ 112 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 112 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3455678899999999999999999999999999999999999899999999999999999999999999876
No 44
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-17 Score=103.53 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=81.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGV---VEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 97 (128)
....+.++|||+|||+++++++|+++|..||. |..+.++.++. ++++|||||+|.+.++|++|++ +++...+..
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr- 88 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR- 88 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE-
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe-
Confidence 34556789999999999999999999999998 88999999976 9999999999999999999999 888764321
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCC
Q 040490 98 GFGFFTMSDESKLNDAIAALDGQA 121 (128)
Q Consensus 98 ~~~fv~f~~~~~a~~a~~~~~g~~ 121 (128)
.-.|...+.++.+.++.......
T Consensus 89 -~i~V~~a~~~~~~~~~~~~~~~~ 111 (118)
T 2db1_A 89 -YIEVFKSHRTEMDWVLKHSGPNS 111 (118)
T ss_dssp -EEEEEEECHHHHHHHHHTTSSCC
T ss_pred -EEEEEECCHHHHHHHHHHhCCCC
Confidence 34566778888888887666543
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-17 Score=99.62 Aligned_cols=74 Identities=28% Similarity=0.556 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
.+.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++.. .|+..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 467899999999999999999999999999999999999899999999999999999999999999976 34443
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.3e-18 Score=101.76 Aligned_cols=76 Identities=32% Similarity=0.417 Sum_probs=67.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
.....+.++|||+|||+++++++|+++|.+||.|..+.++.+ ++.++|||||+|.+.++|..|++.|++.. .++..
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999999999999987 78999999999999999999999999986 34433
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=3.5e-18 Score=99.89 Aligned_cols=70 Identities=27% Similarity=0.424 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 73 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 73 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE
Confidence 4577999999999999999999999999999999999998899999999999999999999999999876
No 48
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=100.96 Aligned_cols=70 Identities=20% Similarity=0.402 Sum_probs=65.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.|++..
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG 71 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe
Confidence 3467899999999999999999999999999999999999899999999999999999999999998865
No 49
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4.7e-18 Score=99.84 Aligned_cols=67 Identities=30% Similarity=0.539 Sum_probs=62.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 87 (128)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|.+|++.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 3456789999999999999999999999999999999999999999999999999999999999975
No 50
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=103.02 Aligned_cols=72 Identities=31% Similarity=0.409 Sum_probs=66.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++. ++..
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~ 81 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT 81 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe
Confidence 34566789999999999999999999999999999999999999999999999999999999999997 7654
No 51
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-18 Score=106.04 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc-CCccc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET-GCSHG 98 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~~~~~ 98 (128)
.....+.++|||+|||+++++++|+++|..||.|..+.++.+..+++++|||||+|.+.++|.+|+. +++... |+..
T Consensus 19 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i- 96 (124)
T 1wel_A 19 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI- 96 (124)
T ss_dssp SSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB-
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE-
Confidence 3445667899999999999999999999999999886666777799999999999999999999999 888774 4433
Q ss_pred EEEEEeCCHHHHHHHHHHh
Q 040490 99 FGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 99 ~~fv~f~~~~~a~~a~~~~ 117 (128)
.|.+.+.++....+..+
T Consensus 97 --~V~~a~~~~~~~~~~~~ 113 (124)
T 1wel_A 97 --QVHPITKKGMLEKIDMI 113 (124)
T ss_dssp --EEEEECHHHHHHHHHHH
T ss_pred --EEEECCHHHHHHHHHHH
Confidence 45666777776666554
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=103.59 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=70.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
.++..+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|++.|++.. .|+..
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3455678999999999999999999999999999999999999899999999999999999999999999986 34433
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=6.3e-18 Score=98.36 Aligned_cols=67 Identities=27% Similarity=0.507 Sum_probs=64.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+.+|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 67 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 67 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe
Confidence 3689999999999999999999999999999999999899999999999999999999999999886
No 54
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=4.5e-18 Score=104.10 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=71.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCC
Q 040490 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGC 95 (128)
Q Consensus 17 ~~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~ 95 (128)
.+.+....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..|++.. .|+
T Consensus 17 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 17 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp -CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3444556678899999999999999999999999999999999998899999999999999999999999999976 344
Q ss_pred ccc
Q 040490 96 SHG 98 (128)
Q Consensus 96 ~~~ 98 (128)
...
T Consensus 97 ~l~ 99 (110)
T 1oo0_B 97 TIQ 99 (110)
T ss_dssp ECE
T ss_pred EEE
Confidence 333
No 55
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=5.4e-19 Score=105.08 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=61.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAG-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 91 (128)
+.+|||+|||+++++++|+++|.+|| .|.++.++.++.++.++|||||+|.+.++|.+|++.+++.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~ 67 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHS 67 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCC
Confidence 46899999999999999999999999 8999999999999999999999999999999999987543
No 56
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=101.98 Aligned_cols=71 Identities=28% Similarity=0.355 Sum_probs=66.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV 74 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999876
No 57
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=6.5e-18 Score=104.57 Aligned_cols=72 Identities=28% Similarity=0.445 Sum_probs=67.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+..+.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 345567899999999999999999999999999999999998899999999999999999999999999876
No 58
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=101.43 Aligned_cols=71 Identities=25% Similarity=0.362 Sum_probs=66.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQ-AGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+..+.++|||+|||+++++++|+++|.. ||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|++..
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCc
Confidence 34567789999999999999999999999 9999999999998 89999999999999999999999999865
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=5.5e-18 Score=101.05 Aligned_cols=71 Identities=31% Similarity=0.458 Sum_probs=65.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++. +.++|||||+|.+.++|.+|++.|++..
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIR 81 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 4456778999999999999999999999999999999999975 8999999999999999999999999876
No 60
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-18 Score=104.24 Aligned_cols=73 Identities=26% Similarity=0.429 Sum_probs=67.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVE--------ISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 91 (128)
..+..+.++|||+|||+++++++|+++|..||.|. .+.++.++.+++++|||||+|.+.++|.+|++.|++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34566789999999999999999999999999998 6999999889999999999999999999999999998
Q ss_pred c
Q 040490 92 E 92 (128)
Q Consensus 92 ~ 92 (128)
.
T Consensus 89 ~ 89 (113)
T 2cpe_A 89 D 89 (113)
T ss_dssp E
T ss_pred c
Confidence 6
No 61
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=1.1e-17 Score=101.30 Aligned_cols=70 Identities=16% Similarity=0.363 Sum_probs=65.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....+.++|||+|||+++++++|+++|..|| |..+.++.++.+++++|||||+|.+.++|.+|+ .|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 79 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL 79 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe
Confidence 4455678999999999999999999999997 999999999999999999999999999999999 899876
No 62
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=8.1e-18 Score=106.91 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc-CCc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGV---VEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET-GCS 96 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~~~ 96 (128)
++..+.++|||+|||+++++++|+++|..||. |..+.++.++. ++++|||||+|.+.++|++|++ +++... ++
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr- 115 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR- 115 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE-
Confidence 44567899999999999999999999999998 88999999986 9999999999999999999999 888764 33
Q ss_pred ccEEEEEeCCHHHHHHHHH
Q 040490 97 HGFGFFTMSDESKLNDAIA 115 (128)
Q Consensus 97 ~~~~fv~f~~~~~a~~a~~ 115 (128)
.--|...+.++.+.+++
T Consensus 116 --~i~V~~a~~~e~~~~~~ 132 (136)
T 2hgl_A 116 --YIEVFKSHRTEMDWVLK 132 (136)
T ss_dssp --EEEEEECCHHHHHHHHT
T ss_pred --EEEEEECChHHHHHHHh
Confidence 34567778888777664
No 63
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=2.1e-18 Score=102.19 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=63.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAG--VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
.+|||+|||+++++++|+++|.+|| .|.++.++.++.+++++|||||+|.+.++|++|++.|++.. .|+..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4799999999999999999999999 99999999999999999999999999999999999999976 44443
No 64
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=103.50 Aligned_cols=71 Identities=27% Similarity=0.408 Sum_probs=66.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 78 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999876
No 65
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.3e-18 Score=102.21 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=65.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET-DRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.......++|||+|||+++++++|+++|..|| |..+.++.++.+ ++++|||||+|.+.++|.+|+ .|++..
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 80 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 80 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 34455679999999999999999999999999 999999999887 899999999999999999999 899876
No 66
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=107.92 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=69.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc----c-c
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEI--SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY----E-T 93 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~-~ 93 (128)
......++|||+|||+++++++|+++|.+||.|.. +.++.++.+++++|||||+|.+. +|.+|++.|++. . .
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34466789999999999999999999999999976 99999999999999999999999 999999999997 3 4
Q ss_pred CCcccEE
Q 040490 94 GCSHGFG 100 (128)
Q Consensus 94 ~~~~~~~ 100 (128)
|+...+.
T Consensus 97 gr~l~V~ 103 (131)
T 2m2b_A 97 GKTINVE 103 (131)
T ss_dssp GCCCCCE
T ss_pred CEEEEEE
Confidence 5544443
No 67
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.6e-18 Score=104.63 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 040490 24 PEDAKLFVGNLRY------DVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETG 94 (128)
Q Consensus 24 ~~~~~l~v~nL~~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 94 (128)
...++|||+|||+ ++++++|+++|.+||.|.++.++.++.|++++|||||+|.+.++|.+|++.|++....
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 3467999999999 9999999999999999999999999999999999999999999999999999998743
No 68
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3e-17 Score=100.28 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 17 EVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 17 ~~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
........+.++|||+|||+++++++|+++|.+||.|..+.+.. ++.++|||||+|.+.++|.+|++.|++..
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 85 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYD 85 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 33445566789999999999999999999999999999998854 35689999999999999999999999876
No 69
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=101.90 Aligned_cols=77 Identities=31% Similarity=0.589 Sum_probs=69.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|++.+++.. .|+..
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 445667899999999999999999999999999999999999899999999999999999999999999976 34433
No 70
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=2.3e-17 Score=100.40 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=69.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCccc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHG 98 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~ 98 (128)
.....+.++|||+|||+++++++|+++|.+||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|++.. .|+...
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445678899999999999999999999999999999999998 89999999999999999999999999886 344433
Q ss_pred E
Q 040490 99 F 99 (128)
Q Consensus 99 ~ 99 (128)
+
T Consensus 102 V 102 (107)
T 3ulh_A 102 I 102 (107)
T ss_dssp E
T ss_pred E
Confidence 3
No 71
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=1.4e-17 Score=104.22 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=73.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCc
Q 040490 18 VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCS 96 (128)
Q Consensus 18 ~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~ 96 (128)
+.+....+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.|++.. .|+.
T Consensus 14 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 14 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 344556678899999999999999999999999999999999998899999999999999999999999999987 3444
Q ss_pred ccEEE
Q 040490 97 HGFGF 101 (128)
Q Consensus 97 ~~~~f 101 (128)
..+.+
T Consensus 94 l~v~~ 98 (126)
T 3ex7_B 94 ISVDW 98 (126)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 44333
No 72
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.3e-18 Score=101.37 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=65.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 81 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP 81 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe
Confidence 34566899999999999999999999999999888888888899999999999999999999999999876
No 73
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.4e-18 Score=102.34 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=65.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
...+.++|||+|||+++++++|+++|.+||+|.++.++.++. +.++|||||+|.+.++|..|+. +++.. .|+..
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l 81 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL 81 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEE
Confidence 445678999999999999999999999999999999999986 9999999999999999999999 77665 44444
No 74
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.4e-17 Score=100.65 Aligned_cols=70 Identities=33% Similarity=0.469 Sum_probs=65.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....++|||+|||+++++++|+++|.+||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|++..
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 80 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQL 80 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44567899999999999999999999999999999999997 68999999999999999999999999987
No 75
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=102.00 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=68.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
.+..+.++|||+|||+++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|+.|++.|++.. .|+..
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345677899999999999999999999999999999999997 89999999999999999999999999987 34433
No 76
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=7.9e-18 Score=103.99 Aligned_cols=73 Identities=26% Similarity=0.399 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccE
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGF 99 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~ 99 (128)
...+|||+|||+++++++|+++|.+||.|.++.++.++ +.++|||||+|.+.++|++|++.|++.. .|+...+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V 77 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 77 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 35689999999999999999999999999999999985 4579999999999999999999999987 3444333
No 77
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.7e-17 Score=98.85 Aligned_cols=70 Identities=27% Similarity=0.467 Sum_probs=63.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++. .++|||||+|.+.++|.+|++.|++..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTV 79 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4456779999999999999999999999999999999998854 389999999999999999999999876
No 78
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1.2e-17 Score=99.83 Aligned_cols=68 Identities=25% Similarity=0.520 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 68 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ 68 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 35799999999999999999999999999999999998899999999999999999999999999986
No 79
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=107.69 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEE
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAG--VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGF 101 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~f 101 (128)
+.++|||+|||+++++++|+++|..|| .|..+.++.++.+++++|||||+|.+.++|++|++.|++.. .|+.. .
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l---~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV---D 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC---E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe---E
Confidence 468999999999999999999999999 99999999999999999999999999999999999999887 44443 3
Q ss_pred EEeCCHHH
Q 040490 102 FTMSDESK 109 (128)
Q Consensus 102 v~f~~~~~ 109 (128)
|.+.+...
T Consensus 131 V~~a~~~~ 138 (156)
T 3n9u_C 131 VRPATRQN 138 (156)
T ss_dssp EEECCHHH
T ss_pred EEEcCCCc
Confidence 55655544
No 80
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=99.55 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=64.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
........++|||+|||+++++++|+++|.+||.|..+.++.++.+ ++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRK 79 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCC
Confidence 3445667899999999999999999999999999999999988543 68999999999999999999999886
No 81
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=106.86 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCe----eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCccc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVV----EISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHG 98 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 98 (128)
..+.++|||+|||+++++++|+++|..||.| ..+.++.++ +++++|||||+|.+.++|++|++. ++...+..
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR-- 95 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR-- 95 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe--
Confidence 4567899999999999999999999999875 688898884 899999999999999999999986 66553321
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCC
Q 040490 99 FGFFTMSDESKLNDAIAALDGQA 121 (128)
Q Consensus 99 ~~fv~f~~~~~a~~a~~~~~g~~ 121 (128)
+--|...+.++.+.++.......
T Consensus 96 ~i~V~~a~~~e~~~~~~~~~~~p 118 (123)
T 2dha_A 96 YIELFRSTAAEVQQVLNRFSSAS 118 (123)
T ss_dssp EECCEEECHHHHHHHHHHHTTCS
T ss_pred EEEEEECCHHHHHHHHHhccCCC
Confidence 34456678888888887755443
No 82
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=4e-18 Score=108.20 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=69.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
+++..+.++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|++|++.|++.. .|+..
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4455667899999999999999999999999999999999998899999999999999999999999999887 34433
No 83
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=4e-18 Score=101.64 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=63.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+..++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 81 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP 81 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCe
Confidence 3446899999999999999999999999999988888988899999999999999999999999999876
No 84
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.6e-17 Score=98.45 Aligned_cols=67 Identities=27% Similarity=0.369 Sum_probs=62.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 87 (128)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 3455678999999999999999999999999999999999998999999999999999999999984
No 85
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=104.91 Aligned_cols=72 Identities=26% Similarity=0.415 Sum_probs=67.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 129 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 129 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE
Confidence 345577999999999999999999999999999999999998899999999999999999999999999875
No 86
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=99.81 Aligned_cols=69 Identities=25% Similarity=0.441 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRE---TDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+.++|||+|||+++++++|+++|.+||.|..+.++.++. ++.++|||||+|.+.++|.+|++.|++..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 74 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe
Confidence 4678999999999999999999999999999999999876 66899999999999999999999999876
No 87
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=100.29 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=64.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEI-SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCS 96 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~ 96 (128)
+.....++|||+|||+++++++|+++|..||.|.. +.++.+ .+++++|||||+|.+.++|.+|++. ++.. .++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~ 85 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY 85 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE
Confidence 34556789999999999999999999999999987 888888 7899999999999999999999997 6655 3443
No 88
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.7e-18 Score=100.57 Aligned_cols=69 Identities=22% Similarity=0.470 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEIS-EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+.++|||+|||+++++++|+++|..||.|..+ .++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 72 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 467899999999999999999999999999999 999998899999999999999999999999999886
No 89
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=101.17 Aligned_cols=92 Identities=25% Similarity=0.436 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEE
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGF 101 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~f 101 (128)
..+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++.. .|+.. .
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l---~ 81 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL---R 81 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB---E
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE---E
Confidence 3456899999999999999999999999999999999999899999999999999999999999999987 44443 3
Q ss_pred EEeCCHHHHHHHHHHh
Q 040490 102 FTMSDESKLNDAIAAL 117 (128)
Q Consensus 102 v~f~~~~~a~~a~~~~ 117 (128)
|.+.............
T Consensus 82 v~~a~~~~~~~~~~~~ 97 (104)
T 1p1t_A 82 VDNAASEKNKEELKSL 97 (104)
T ss_dssp EEETTCTTHHHHHHHH
T ss_pred EEeCCCccchhhhccC
Confidence 5555555544444443
No 90
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-17 Score=104.07 Aligned_cols=71 Identities=30% Similarity=0.509 Sum_probs=66.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+....++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 108 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN 108 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999976
No 91
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=99.55 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=61.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+...++|||+|||+++++++|+++|..||.+ .+.++.++ +++++|||||+|.+.++|++|++ +++..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKAN 78 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCe
Confidence 45567899999999999999999999999954 99999997 89999999999999999999995 67765
No 92
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=100.93 Aligned_cols=95 Identities=12% Similarity=0.171 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc-CCc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGV---VEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET-GCS 96 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~~~ 96 (128)
......++|||+|||+++++++|+++|..||. |..+.++.++. ++++|||||+|.+.++|.+|++ +++... ++.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567899999999999999999999999988 88999999976 9999999999999999999999 888764 343
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCC
Q 040490 97 HGFGFFTMSDESKLNDAIAALDGQ 120 (128)
Q Consensus 97 ~~~~fv~f~~~~~a~~a~~~~~g~ 120 (128)
-.|...+..+...++......
T Consensus 84 ---i~V~~a~~~~~~~~~~~~~~~ 104 (107)
T 2lmi_A 84 ---VEVYEINNEDVDALMKSLQVK 104 (107)
T ss_dssp ---CCCEECCHHHHHHHHHTTCCC
T ss_pred ---EEEEECCHHHHHHHHHhhccC
Confidence 345667788888777755443
No 93
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=96.31 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEE
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR-STGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGF 101 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~f 101 (128)
...++|||+|||+++++++|+++|.+||.|..+.++.++.++. ++|||||+|.+.++|.+|++.|++.. .|+.....+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999887666 89999999999999999999999987 444444433
No 94
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.9e-17 Score=101.42 Aligned_cols=77 Identities=29% Similarity=0.365 Sum_probs=64.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 97 (128)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++.++....|+..
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEE
Confidence 34567799999999999999999999999999999999999989999999999999999999999976533344443
No 95
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-17 Score=100.06 Aligned_cols=89 Identities=11% Similarity=0.216 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccE
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVV-EISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGF 99 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~ 99 (128)
.+.+.++|||+|||+++++++|+++|..||.| ..+.++.++ +++++|||||+|.+.++|.+|++. ++.. .++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~--- 85 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGRE--- 85 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEE---
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeE---
Confidence 34567899999999999999999999999999 889999998 899999999999999999999986 7655 3433
Q ss_pred EEEEeCCHHHHHHHHH
Q 040490 100 GFFTMSDESKLNDAIA 115 (128)
Q Consensus 100 ~fv~f~~~~~a~~a~~ 115 (128)
-.|.+.+.++...+..
T Consensus 86 i~v~~a~~~~~~~~~~ 101 (114)
T 2cpy_A 86 AFVHVVTLEDMREIEK 101 (114)
T ss_dssp EEEEEECHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHh
Confidence 3566777777666554
No 96
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=102.29 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
...++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 91 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL 91 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe
Confidence 44689999999999999999999999999999999999989999999999999999999999 8998763
No 97
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=9.2e-17 Score=95.14 Aligned_cols=69 Identities=28% Similarity=0.451 Sum_probs=63.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...+.++|||+|||+++++++|+++|.+||.|..+.++.+ ++.++|||||+|.+.++|.+|++.|++..
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 72 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMK 72 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456789999999999999999999999999999998873 78899999999999999999999999876
No 98
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=3.7e-17 Score=96.24 Aligned_cols=67 Identities=19% Similarity=0.433 Sum_probs=63.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|+ .+++..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~ 71 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL 71 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE
Confidence 3579999999999999999999999999999999999889999999999999999999999 898876
No 99
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=1.3e-16 Score=99.61 Aligned_cols=75 Identities=25% Similarity=0.369 Sum_probs=68.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
.....++|||+|||+++++++|+++|..||.|..+.++.++ +++++|||||+|.+.++|.+|++.|++.. .|+..
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999986 34443
No 100
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=95.22 Aligned_cols=71 Identities=31% Similarity=0.411 Sum_probs=64.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSH 97 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 97 (128)
++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||.|.+.++|.+|++.++....|+..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEE
Confidence 57999999999999999999999999999999999889999999999999999999999988833355543
No 101
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=8.1e-17 Score=104.17 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 105 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR 105 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3467899999999999999999999999999999999999999999999999999999999999999886
No 102
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=6.8e-17 Score=105.54 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=71.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCccc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHG 98 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~ 98 (128)
+....+.++|||+|||+++++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|..|+..|++.. .|+...
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3345567899999999999999999999999999999999999999999999999999999999999999986 455444
Q ss_pred EEEE
Q 040490 99 FGFF 102 (128)
Q Consensus 99 ~~fv 102 (128)
+.|.
T Consensus 146 V~~a 149 (165)
T 1rk8_A 146 VDWC 149 (165)
T ss_dssp EEES
T ss_pred EEEe
Confidence 4443
No 103
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=102.11 Aligned_cols=68 Identities=29% Similarity=0.485 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++. ++..
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~ 92 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS 92 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE
Confidence 3468999999999999999999999999999999999999999999999999999999999986 6554
No 104
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=95.90 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=58.0
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 26 DAKLFVGNLRYDV------DSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 26 ~~~l~v~nL~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.++|||+|||+++ ++++|+++|.+||.|..+.++ +.+++++|||||+|.+.++|.+|++.|++..
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 3689999999999 679999999999999999877 4578889999999999999999999888876
No 105
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=98.44 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 040490 7 GGEESFGDGSEVDYSEPPEDAKLFVGNLRYD-VDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVV 85 (128)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 85 (128)
.++...+...........+.++|||+|||++ +++++|+++|.+||.|.++.+++ .+|||||+|.+.++|..|+
T Consensus 6 ~~~~~~~~~~k~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai 79 (112)
T 1x4f_A 6 SGKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMV 79 (112)
T ss_dssp SCCCSCCCCCCCCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHH
T ss_pred CCccccCChhhhccccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHH
Confidence 3344444433333344667899999999998 99999999999999999998864 3789999999999999999
Q ss_pred HHhcCc---ccCCcccEEEE
Q 040490 86 EMFNRY---ETGCSHGFGFF 102 (128)
Q Consensus 86 ~~l~~~---~~~~~~~~~fv 102 (128)
+.|++. ..|+...+.+.
T Consensus 80 ~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 80 DHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp HHHHHSCCCSSSSCCEEEEE
T ss_pred HHhccCCceECCEEEEEEEC
Confidence 988753 35666655544
No 106
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=98.75 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
+.+.++|||+|||+++++++|+++|.+||.|.++.++.+ +|||||+|.+.++|..|++.+++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcc
Confidence 456789999999999999999999999999999998864 68999999999999999998875
No 107
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.9e-17 Score=94.63 Aligned_cols=64 Identities=39% Similarity=0.637 Sum_probs=60.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++ +++..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~ 64 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE 64 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE
Confidence 58999999999999999999999999999999998899999999999999999999997 77765
No 108
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=96.58 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=61.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc---ccCCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY---ETGCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~---~~~~~~ 97 (128)
....+.++|||+|||+++++++|+++|.+||.|.++.++.+ +|||||+|.+.++|..|++.+++. ..|+..
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34456789999999999999999999999999999987754 789999999999999999987642 245555
Q ss_pred cEEE
Q 040490 98 GFGF 101 (128)
Q Consensus 98 ~~~f 101 (128)
.+.|
T Consensus 84 ~V~~ 87 (101)
T 2cq1_A 84 YIQY 87 (101)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4333
No 109
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-16 Score=96.32 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=62.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc---cCCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---TGCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---~~~~~ 97 (128)
....+.++|||+|||+++++++|+++|.+||.|..+.++.+ +|||||+|.+.++|..|++.|++.. .|+..
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34456789999999999999999999999999999987753 7899999999999999999887642 55655
Q ss_pred cEEE
Q 040490 98 GFGF 101 (128)
Q Consensus 98 ~~~f 101 (128)
.+.|
T Consensus 84 ~V~~ 87 (104)
T 1wex_A 84 FFNY 87 (104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 110
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-16 Score=97.46 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcccEEE
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHGFGF 101 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~f 101 (128)
...+.++|||+|||+++++++|+++|..| .|..+.++.++. ++++|||||+|.++++|++|+ .+++...+.. .-.
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr--~i~ 86 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR--YVE 86 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTE--EEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCe--EEE
Confidence 34456899999999999999999999999 899999999975 999999999999999999999 5887764321 334
Q ss_pred EEeCCHHHHH
Q 040490 102 FTMSDESKLN 111 (128)
Q Consensus 102 v~f~~~~~a~ 111 (128)
|...+..+-.
T Consensus 87 V~~a~~~~~~ 96 (109)
T 2dnn_A 87 VSPATERQWV 96 (109)
T ss_dssp EEECCHHHHH
T ss_pred EEECCccchh
Confidence 5566655433
No 111
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=1.4e-16 Score=103.15 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEE
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFG 100 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~ 100 (128)
.....++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|++.|++.. .|+...+.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999999999999998899999999999999999999999999976 44444433
Q ss_pred E
Q 040490 101 F 101 (128)
Q Consensus 101 f 101 (128)
+
T Consensus 146 ~ 146 (158)
T 2kn4_A 146 M 146 (158)
T ss_dssp E
T ss_pred E
Confidence 3
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.8e-17 Score=99.14 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=64.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH---HHhhccCCeeEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLA---HLFNQAGVVEISEVIFYRETD---RSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......++|||+|||+++++++|+ ++|.+||.|..+.++.++.++ .++|||||+|.+.++|++|++.|++..
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 345567899999999999999999 999999999999999887643 567999999999999999999999987
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.9e-17 Score=99.57 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=63.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc---ccCCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY---ETGCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~---~~~~~~ 97 (128)
...++.++|||+|||+++++++|+++|.+||.|.++.++.+ +|||||+|.+.++|..|++.+++. ..|+..
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34456789999999999999999999999999999998865 789999999999999999988753 356655
Q ss_pred cEEE
Q 040490 98 GFGF 101 (128)
Q Consensus 98 ~~~f 101 (128)
.+.|
T Consensus 100 ~V~~ 103 (119)
T 2ad9_A 100 YIQF 103 (119)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 114
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.7e-17 Score=97.38 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=63.9
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc---cCCcc
Q 040490 22 EPPEDAKLFVGNLRY-DVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---TGCSH 97 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---~~~~~ 97 (128)
...+.++|||+|||+ ++++++|+++|.+||.|.++.++.+ +|||||+|.+.++|..|++.|++.. .|+..
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345678999999999 9999999999999999999998765 4799999999999999999998653 56666
Q ss_pred cEEEE
Q 040490 98 GFGFF 102 (128)
Q Consensus 98 ~~~fv 102 (128)
.+.+.
T Consensus 85 ~V~~a 89 (102)
T 1x4d_A 85 RVHLS 89 (102)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 54443
No 115
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=94.19 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=64.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......++|||+|||+++++++|+++|..| .|..+.++.+ .+++++|||||+|.+.++|.+|++ +++..
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~ 73 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREY 73 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCce
Confidence 345667899999999999999999999999 9999999999 789999999999999999999999 99876
No 116
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.3e-17 Score=96.10 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=63.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLA----HLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
..+.++|||+|||+++++++|+ ++|.+||.|.++.++.++.+ +|||||+|.+.++|.+|++.|++.. .|+..
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999988765 8899999999999999999999986 34433
No 117
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=99.06 Aligned_cols=71 Identities=20% Similarity=0.359 Sum_probs=61.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYR-ETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.......++|||+|||+++++++|+++|..|| |..+.++.++ .+++++|||||+|.+.++|.+|+ .|++..
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~ 84 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 84 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 34456789999999999999999999999999 9999999988 68999999999999999999999 799876
No 118
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=9.8e-17 Score=109.99 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEE
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAG--VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGF 101 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~f 101 (128)
..++|||+|||+++++++|+++|.+|| .|..+.++.++.+++++|||||+|.+.++|++||+.|++.. .++.. .
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l---~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP---V 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC---E
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe---E
Confidence 567899999999999999999999999 99999999999999999999999999999999999999887 44444 3
Q ss_pred EEeCCHHH
Q 040490 102 FTMSDESK 109 (128)
Q Consensus 102 v~f~~~~~ 109 (128)
|.+.....
T Consensus 144 V~~a~~~~ 151 (229)
T 3q2s_C 144 VTPVNKQF 151 (229)
T ss_dssp EEECCHHH
T ss_pred EEECCCCc
Confidence 55555544
No 119
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=9.5e-17 Score=100.66 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=63.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCee--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCccc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVE--ISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSHG 98 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 98 (128)
....+.++|||+|||+++++++|+++|..| .|. .+.++.++. ++++|||||+|.+.++|++|++..+....+|...
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 345567899999999999999999999999 566 899999976 9999999999999999999998644333455443
No 120
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=96.86 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhc--Ccc-cCCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGV-VEISEVI-FYRETDRSTGFGFVTMSTVEEAEKVVEMFN--RYE-TGCSH 97 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~-~~~~~ 97 (128)
..+.++|||+|||+++++++|+++|..||. |..+.++ .++.++.++|||||+|.+.++|..|++.|+ +.. .|+..
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 446789999999999999999999999998 9999988 788888999999999999999999999996 343 45544
Q ss_pred c
Q 040490 98 G 98 (128)
Q Consensus 98 ~ 98 (128)
.
T Consensus 85 ~ 85 (109)
T 2dis_A 85 A 85 (109)
T ss_dssp E
T ss_pred E
Confidence 3
No 121
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-16 Score=95.90 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
....++|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|+.|++.|++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 456789999999999999999999999999999998875 7999999999999999999998763
No 122
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=8.2e-17 Score=97.86 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=62.3
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 23 PPEDAKLFVGNLRYDV------DSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
....++|||+|||+.+ ++++|+++|.+||.|..+.++ +.+++++|||||+|.+.++|..|++.|++...
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 3446899999999999 789999999999999999887 46789999999999999999999999999873
No 123
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.6e-17 Score=99.63 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=59.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRET---DRSTGFGFVTMSTVEEAEKVVEMFN 89 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~ 89 (128)
....++|||+|||+++++++|+++|.+||.|. +.++.++.+ ++++|||||+|.+.++|++|++.++
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 44678999999999999999999999999998 778777766 6899999999999999999999883
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.3e-16 Score=93.22 Aligned_cols=67 Identities=15% Similarity=0.332 Sum_probs=59.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
....+.++|||+|||+++++++|+++|.+||.|..+.++.+ +|||||+|.+.++|++|++.|++...
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPL 78 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 34556789999999999999999999999999999987653 78999999999999999999998874
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-16 Score=98.22 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=66.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCC
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLA----HLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGC 95 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~ 95 (128)
....+.++|||+|||+.+++++|+ ++|.+||.|.++.+. .+++++|||||+|.+.++|..|++.|++.. .|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 344567899999999999999876 689999999888764 367889999999999999999999999987 566
Q ss_pred cccEEEE
Q 040490 96 SHGFGFF 102 (128)
Q Consensus 96 ~~~~~fv 102 (128)
...+.|.
T Consensus 101 ~l~V~~a 107 (127)
T 2a3j_A 101 PLVITFS 107 (127)
T ss_dssp CCEEEEC
T ss_pred EEEEEEc
Confidence 6554443
No 126
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=4.6e-17 Score=96.12 Aligned_cols=74 Identities=31% Similarity=0.528 Sum_probs=66.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEE
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGF 101 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~f 101 (128)
++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.+ |.+|+..|++.. .|+...+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 58999999999999999999999999999999999989999999999999999 999999999987 455554443
No 127
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.2e-16 Score=93.59 Aligned_cols=68 Identities=26% Similarity=0.368 Sum_probs=60.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 19 DYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 19 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......+.++|||+|||+++++++|+++|.+||.|..+.++.+ +|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~ 75 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMP 75 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCC
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 3345567789999999999999999999999999999988743 6899999999999999999999886
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.2e-16 Score=92.28 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=60.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
.......++|||+|||+++++++|+++|..||.|. +.++.+ .++|||||+|.+.++|..|++.|++.. .|+..
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34455678999999999999999999999999986 555543 678999999999999999999999886 34443
No 129
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.3e-16 Score=93.53 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEEEEe
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGFFTM 104 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~fv~f 104 (128)
+.-|||+||++.+++++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+.. .|+.. .|.|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I---~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTI---FAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEE---EEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEE---EEEE
Confidence 56799999999999999999999999999998865 58999999999999999999999987 44443 3566
Q ss_pred CCHHHHHHHH
Q 040490 105 SDESKLNDAI 114 (128)
Q Consensus 105 ~~~~~a~~a~ 114 (128)
.+.++.+.-+
T Consensus 78 A~e~~~~~~~ 87 (89)
T 2wbr_A 78 PSENEVQSIM 87 (89)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHh
Confidence 6777766544
No 130
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=3.9e-16 Score=94.00 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=64.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc---cCCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---TGCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---~~~~~ 97 (128)
...++.++|||+|||+++++++|+++|.+||.|.++.++. .||+|||+|.+.++|..|++.+++.. .|+..
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 4455778999999999999999999999999999998874 37899999999999999999998764 34443
Q ss_pred cEEEEEeCC
Q 040490 98 GFGFFTMSD 106 (128)
Q Consensus 98 ~~~fv~f~~ 106 (128)
+|.|.+
T Consensus 90 ---~V~~S~ 95 (100)
T 3r27_A 90 ---FVNYST 95 (100)
T ss_dssp ---EEEECS
T ss_pred ---EEEecc
Confidence 455554
No 131
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.1e-16 Score=94.02 Aligned_cols=69 Identities=30% Similarity=0.442 Sum_probs=62.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....+.++|||+|||+++++++|+++|..++ .+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 78 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 4456789999999999999999999999774 67788888899999999999999999999999999986
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=5.6e-17 Score=92.60 Aligned_cols=68 Identities=31% Similarity=0.446 Sum_probs=60.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCc
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCS 96 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~ 96 (128)
+|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|++. ++.. .|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSK 69 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 689999999999999999999999999999999988999999999999999999999985 4433 4443
No 133
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1.9e-16 Score=98.66 Aligned_cols=67 Identities=13% Similarity=0.408 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|+ .|++..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~ 101 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV 101 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe
Confidence 4689999999999999999999999999999999999889999999999999999999999 788876
No 134
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=3e-17 Score=104.63 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=60.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......++|||+|||+++++++|+++|.+|| +..+.++.++. ++++|||||+|.+.++|++|+ .+++..
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~ 109 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRAN 109 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCE
Confidence 3455678999999999999999999999999 66999999975 999999999999999999999 677765
No 135
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=94.58 Aligned_cols=67 Identities=25% Similarity=0.480 Sum_probs=60.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...+.++|||+|||+++++++|+++|.+||.| .++.+ .+++++|||||+|.+.++|++|++.|++..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 77 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKRE 77 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45578999999999999999999999999976 45555 678999999999999999999999999876
No 136
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=96.56 Aligned_cols=71 Identities=27% Similarity=0.460 Sum_probs=64.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.......++|||+|||+++++++|+++|.+||.|..+.++.++ +.++|||||+|.+.++|++|++.|++..
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~ 93 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV 93 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCE
Confidence 3445678999999999999999999999999999999999885 3489999999999999999999999876
No 137
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=97.13 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=62.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
....+.++|||+|||+++++++|+++|..||.|..+.+..+..+++++|||||+|.+.++|..|++.|++.. .|+..
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999988433222222378899999999999999999999999976 34433
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=8e-16 Score=89.77 Aligned_cols=67 Identities=24% Similarity=0.295 Sum_probs=59.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-cCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMF-NRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~ 92 (128)
++.....++|||+|||+++++++|+++|.+||.|..+.++.+ +|||||+|.+.++|..|++.| ++..
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~ 73 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLI 73 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCE
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCee
Confidence 344567789999999999999999999999999999988863 689999999999999999988 6654
No 139
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-17 Score=98.29 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=61.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....++|||+|||+++++++|+++|..||.|.. .++.++.++.++|||||+|.+.++|.+|++ |++..
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~ 81 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK 81 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcE
Confidence 3456789999999999999999999999998877 666777788999999999999999999998 98876
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=6.2e-17 Score=97.71 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEE
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGF 101 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~f 101 (128)
....++|||+|||+++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|..|++ ++.. .|+...+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999998 4433 455544444
Q ss_pred EE
Q 040490 102 FT 103 (128)
Q Consensus 102 v~ 103 (128)
..
T Consensus 83 a~ 84 (102)
T 2xs2_A 83 AI 84 (102)
T ss_dssp EE
T ss_pred CC
Confidence 43
No 141
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=1.7e-15 Score=93.23 Aligned_cols=79 Identities=16% Similarity=0.309 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc-CCcccEEE
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET-GCSHGFGF 101 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~~~~~~~f 101 (128)
+...++|||+|||+++++++|+++|..||.|..+.++.+ +.++|||||+|.+.++|..|++.|++... |+...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~--- 78 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLV--- 78 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCE---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE---
Confidence 456789999999999999999999999999999998865 45589999999999999999999999873 44433
Q ss_pred EEeCCH
Q 040490 102 FTMSDE 107 (128)
Q Consensus 102 v~f~~~ 107 (128)
|.+...
T Consensus 79 v~~a~~ 84 (115)
T 3lqv_A 79 VLYYNA 84 (115)
T ss_dssp EEECCH
T ss_pred EEEecC
Confidence 445443
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=1.3e-15 Score=100.64 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEEE
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGFF 102 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~fv 102 (128)
...++|||+|||+++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|..|++.|++.. .|+...+.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999999998 89999999999999999999999999986 4555544443
No 143
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=89.76 Aligned_cols=63 Identities=29% Similarity=0.541 Sum_probs=57.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...+.++|||+|||+++++++|+++|.+||.|..+.++ +|||||+|.+.++|.+|++.|++..
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~ 66 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYK 66 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCc
Confidence 34567899999999999999999999999999999886 5799999999999999999999875
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.3e-15 Score=96.46 Aligned_cols=72 Identities=26% Similarity=0.494 Sum_probs=67.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......++|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||.|.+.++|.+|++.|++..
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 345567899999999999999999999999999999999999999999999999999999999999999987
No 145
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-15 Score=90.37 Aligned_cols=76 Identities=25% Similarity=0.240 Sum_probs=63.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCC
Q 040490 18 VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEIS-EVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGC 95 (128)
Q Consensus 18 ~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~ 95 (128)
.+.+.....++|||+|||+++++++|+++|.+||.|..+ .++.++.+ |.|||+|.+.++|..|++.|++.. .|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 7 GSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp SCCCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 334445667899999999999999999999999999999 57777543 339999999999999999999987 344
Q ss_pred cc
Q 040490 96 SH 97 (128)
Q Consensus 96 ~~ 97 (128)
..
T Consensus 83 ~l 84 (96)
T 2e44_A 83 TL 84 (96)
T ss_dssp BC
T ss_pred EE
Confidence 43
No 146
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=4.9e-16 Score=95.91 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=57.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCS 96 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~ 96 (128)
....++|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|+.|++.|++.. .|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 356789999999999999999999999999999988765 899999999999999999999987 3444
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.7e-15 Score=89.03 Aligned_cols=75 Identities=21% Similarity=0.380 Sum_probs=62.6
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCccc
Q 040490 21 SEPPEDAKLFVGNLRY-DVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHG 98 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~ 98 (128)
.+.++.++|||+|||+ ++++++|+++|.+||.|..+.+. +|||||+|.+.++|..|++.|++.. .|+...
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3456789999999998 99999999999999999998873 6899999999999999999999887 466665
Q ss_pred EEEEE
Q 040490 99 FGFFT 103 (128)
Q Consensus 99 ~~fv~ 103 (128)
+.+..
T Consensus 77 V~~a~ 81 (96)
T 2kvi_A 77 LEVSS 81 (96)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 55554
No 148
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-15 Score=89.13 Aligned_cols=67 Identities=27% Similarity=0.334 Sum_probs=58.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 18 VDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQA--GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 18 ~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.........++|||+|||+++++++|+++|.+| |.|..+.+. +|||||+|.+.++|..|++.|++..
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~ 75 (99)
T 2cpd_A 7 GDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKV 75 (99)
T ss_dssp CCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEE
T ss_pred ccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 334445677999999999999999999999999 888887653 6799999999999999999999986
No 149
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=5.8e-16 Score=95.13 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=61.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAG-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCS 96 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~ 96 (128)
..++..++|||+|||+++++++|+++|.+|| .|..+.+.. .+++|||||+|.+.++|++|++.|++.. .|+.
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3455678999999999999999999999999 898887743 3578999999999999999999999986 3443
No 150
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-17 Score=102.05 Aligned_cols=71 Identities=24% Similarity=0.403 Sum_probs=66.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEI--------SEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+..+.++|||+|||+++++++|+++|..||.|.. +.++.++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 3456789999999999999999999999999988 8899998889999999999999999999999999876
No 151
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=4.3e-15 Score=90.77 Aligned_cols=67 Identities=25% Similarity=0.369 Sum_probs=58.8
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 23 PPEDAKLFVGNLRYD-VDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
....++|||+|||++ +++++|+++|.+||.|..+.+ ++|||||+|.+.++|+.|++.|++.. .|+..
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 344589999999999 999999999999999999887 47899999999999999999999876 34433
No 152
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3.8e-16 Score=93.31 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=62.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCC
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLA----HLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGC 95 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~ 95 (128)
++.++.++|||+|||+++++++|+ ++|.+||.|..+.++. ++.++|||||+|.+.++|..|++.|++.. .|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 345678999999999999999999 9999999999988763 46778999999999999999999999986 344
Q ss_pred cc
Q 040490 96 SH 97 (128)
Q Consensus 96 ~~ 97 (128)
..
T Consensus 80 ~l 81 (97)
T 1nu4_A 80 PM 81 (97)
T ss_dssp EC
T ss_pred EE
Confidence 33
No 153
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.6e-15 Score=90.32 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=57.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....++|||+|||+++++++|+++|..||.|.++.++ +++|||||+|.+.++|..|+..|++..
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~ 87 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFP 87 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 3456899999999999999999999999999999887 357899999999999999999998876
No 154
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=93.20 Aligned_cols=75 Identities=11% Similarity=0.021 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEE
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGF 101 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~f 101 (128)
....++|||+|||+++++++|+++|.+||.|..+.++. .+|||||+|.+.++|..|++.|++.. .++...+.|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999987753 57899999999999999999999986 566665555
Q ss_pred EE
Q 040490 102 FT 103 (128)
Q Consensus 102 v~ 103 (128)
..
T Consensus 81 a~ 82 (111)
T 1whx_A 81 AP 82 (111)
T ss_dssp EE
T ss_pred CC
Confidence 43
No 155
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=4.4e-15 Score=95.40 Aligned_cols=74 Identities=26% Similarity=0.401 Sum_probs=64.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccE
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGF 99 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~ 99 (128)
......++|||+|||+++++++|+++|..||.|.++.++.+ ++|||||+|.+.++|..|++.|++.. .|+...+
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 44566799999999999999999999999999999998775 58999999999999999999999986 4444433
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=5.8e-15 Score=96.04 Aligned_cols=70 Identities=19% Similarity=0.376 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|+|||.|.+.++|.+|++.|++..
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 3457899999999999999999999999999999999998899999999999999999999999999976
No 157
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-15 Score=88.40 Aligned_cols=64 Identities=25% Similarity=0.399 Sum_probs=58.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......++|||+|||+++++++|+++|.+||.|..+.++. +||||+|.+.++|.+|++.|++..
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~ 68 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTE 68 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCe
Confidence 4456789999999999999999999999999999998863 399999999999999999999886
No 158
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=2.9e-15 Score=91.50 Aligned_cols=64 Identities=25% Similarity=0.462 Sum_probs=57.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
......++|||+|||+++++++|+++|.+||.|..+.++ +|||||+|.+.++|.+|++.|++..
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~ 89 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKS 89 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 345677999999999999999999999999999999887 6899999999999999999999886
No 159
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=4.3e-15 Score=89.01 Aligned_cols=69 Identities=22% Similarity=0.398 Sum_probs=59.4
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc-CCcc
Q 040490 21 SEPPEDAKLFVGNLRY-DVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET-GCSH 97 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~~~~ 97 (128)
...++.++|||+|||+ ++++++|+++|..||.|..+.+. +|||||+|.+.++|.+|++.+++... |+..
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4456789999999998 99999999999999999998872 78999999999999999999998863 4443
No 160
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.8e-15 Score=91.45 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=59.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....++|||+|||+++++++|+++|..||.|..+.++.+ +|||||+|.+.++|..|++.|++..
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~ 85 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTT 85 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 3456789999999999999999999999999999988865 7899999999999999999999876
No 161
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=93.76 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=57.0
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFV--GNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v--~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..++.+||| +||++++++++|+++|.+||.|.++.++. .+|||||+|.+.++|++|++.||+..
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 445788999 77999999999999999999999887653 37899999999999999999999975
No 162
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=8.6e-16 Score=91.61 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=59.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....+.++|||+|||+++++++|+++|..||.|..+ ..++.++|||||+|.+.++|..|++.|++..
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 77 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 77 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3445677999999999999999999999999987655 3578899999999999999999999999876
No 163
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=4.1e-15 Score=110.35 Aligned_cols=69 Identities=16% Similarity=0.358 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...++|||+|||+++++++|..+|.+||.|..|.|+.++.++.++|||||+|.+.++|..||..|++..
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 456899999999999999999999999999999999998899999999999999999999999999987
No 164
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=91.61 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=57.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
++|||+|||+++++++|+++|.+||.|..+.++.+ ++|||||+|.+.++|.+|++.|++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~ 61 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKV 61 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCe
Confidence 58999999999999999999999999999998876 68999999999999999999999876
No 165
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=87.72 Aligned_cols=63 Identities=29% Similarity=0.450 Sum_probs=57.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...+.++|||+|||+++++++|+++|.+||.|..+.++. +||||+|.+.++|.+|++.|++..
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~ 67 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKE 67 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCE
Confidence 456778999999999999999999999999999998863 399999999999999999999876
No 166
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=1.2e-14 Score=97.79 Aligned_cols=76 Identities=14% Similarity=0.368 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccE
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGF 99 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~ 99 (128)
...++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++.. .|+...+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V 199 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 199 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEE
Confidence 456899999999999999999999999999999999999899999999999999999999999999987 3444333
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=1.3e-14 Score=93.95 Aligned_cols=70 Identities=24% Similarity=0.426 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|.+|++.|++..
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 155 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 155 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE
Confidence 4567899999999999999999999999999999999998899999999999999999999999999987
No 168
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.5e-15 Score=86.86 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=57.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....++|||+|||+++++++|+++|..||.|..+ +.++.++. ||||+|.+.++|..|+. |++..
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~ 68 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHS 68 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeE
Confidence 34456899999999999999999999999999987 66665555 99999999999999999 98876
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=1.1e-14 Score=94.03 Aligned_cols=71 Identities=28% Similarity=0.430 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
....++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|.+|++.|++...
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 155 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 155 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc
Confidence 34568899999999999999999999999999999999988999999999999999999999999999873
No 170
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.3e-15 Score=93.93 Aligned_cols=66 Identities=9% Similarity=0.087 Sum_probs=58.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhcCcc
Q 040490 27 AKLFVGNL----RYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST----VEE----AEKVVE--MFNRYE 92 (128)
Q Consensus 27 ~~l~v~nL----~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 92 (128)
..|||+|| |+.+++.+|+.+|..||+|.++.++.|+.|+.++||+||.|.+ ++. |.+|++ .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 778877 566665
No 171
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=6.7e-15 Score=88.92 Aligned_cols=62 Identities=27% Similarity=0.371 Sum_probs=56.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..+.++|||+|||+++++++|+++|.+||.|..+.++ ++||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~ 69 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKD 69 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCc
Confidence 3456899999999999999999999999999998876 4599999999999999999999986
No 172
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=3.4e-15 Score=88.16 Aligned_cols=57 Identities=28% Similarity=0.325 Sum_probs=49.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEK 83 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 83 (128)
.....++|||+|||+++++++|+++|.+||.|.++.++.+ ++|||||+|.+.++|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH
Confidence 4567799999999999999999999999999999988764 68999999999999873
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=8.3e-15 Score=95.39 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=64.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....++|||+|||+++++++|+++|.+||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|++..
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 3467899999999999999999999999999999999985 68999999999999999999999999876
No 174
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=1.9e-14 Score=95.58 Aligned_cols=70 Identities=19% Similarity=0.388 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
....++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 180 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 180 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 4567999999999999999999999999999999999998899999999999999999999999999986
No 175
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=9.9e-15 Score=94.98 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=60.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
.+....+|||+||++.+++++|+++|.+||.|.++.+... .++|||||+|.+.++|+.|++.|++...
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445678999999999999999999999999999988643 2578999999999999999999999874
No 176
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-14 Score=85.40 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=57.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 20 YSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 20 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.....+.++|||+|| ++++++|+++|.+||.|..+.+. .++|||||+|.+.++|.+|++.|++..
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~ 73 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQ 73 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEE
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 344567789999995 99999999999999999999874 467899999999999999999999886
No 177
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=96.82 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=63.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEE--E---EecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISE--V---IFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCS 96 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~--~---~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~ 96 (128)
..+.++|||+|||+++++++|+++|..||.|..+. + +....++.++|||||+|.+.++|..|+..|++.. .|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999887631 0 1112468899999999999999999999999987 4544
Q ss_pred ccEEEE
Q 040490 97 HGFGFF 102 (128)
Q Consensus 97 ~~~~fv 102 (128)
..+.+.
T Consensus 122 l~V~~a 127 (143)
T 3egn_A 122 MVVQFA 127 (143)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 444443
No 178
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.6e-15 Score=87.99 Aligned_cols=68 Identities=24% Similarity=0.397 Sum_probs=56.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC-cc-cCCcc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGV-VEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR-YE-TGCSH 97 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~-~~~~~ 97 (128)
....++|||+|||+++++++|+++|.+||. +..+.+. ++|||||+|.+.++|++|++.|++ .. .|+..
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 456789999999999999999999999998 5555442 478999999999999999999998 54 44433
No 179
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=6.5e-14 Score=87.47 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=56.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhcCccc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF-GFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
.....|||+||++.+++++|+++|.+||.|.++.++. + .|| |||+|.+.++|..|++.|++...
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3345678999999999999999999999999998864 2 276 99999999999999999999874
No 180
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=2.2e-14 Score=95.14 Aligned_cols=73 Identities=27% Similarity=0.491 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
...++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||.|.+.++|.+|+.. ++.. .|+..
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i 175 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNC 175 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999986 4433 45443
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.56 E-value=2.2e-14 Score=95.92 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=63.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSH 97 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 97 (128)
.++|||+|||+++++++|+++|.+||.|..+.++.+. ++.++|||||+|.+.++|..|+..++....|+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l 179 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 179 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEEC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 4899999999999999999999999999999999886 5889999999999999999999876654455544
No 182
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=9.1e-15 Score=85.96 Aligned_cols=62 Identities=24% Similarity=0.407 Sum_probs=56.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
...++|||+|||+++++++|+++|.+| .|..+.+. +++|||||+|.+.++|++|++.|++..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~ 64 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYS 64 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 356899999999999999999999999 99888774 568999999999999999999999986
No 183
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=1.2e-14 Score=85.01 Aligned_cols=62 Identities=23% Similarity=0.480 Sum_probs=55.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQA----G-------VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+.++|||+|||+++++++|+++|.+| | .|.++.+..+ +|||||+|.+.++|.+|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8888877644 789999999999999999 888875
No 184
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=2.2e-14 Score=96.93 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEE
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFG 100 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~ 100 (128)
...+|||+|||+++++++|+++|..||.|..+.++.+. +.++|||||+|.+.++|.+|++.||+.. .|+...+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45789999999999999999999999999999999885 4579999999999999999999999987 45544433
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=1.6e-14 Score=93.49 Aligned_cols=72 Identities=25% Similarity=0.499 Sum_probs=64.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
..++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|++ +++.. .|+..
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 158 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKI 158 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEE
Confidence 45789999999999999999999999999999999998899999999999999999999998 66655 44443
No 186
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=7.4e-14 Score=87.75 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=63.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhcCccc-CCcccEE
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGF-GFVTMSTVEEAEKVVEMFNRYET-GCSHGFG 100 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~-~~~~~~~ 100 (128)
+..-.+|||+||++.+++++|+++|.+||.|.++.+... .+|+ |||+|.+.++|..|++.|++... +.++. -
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~-L 98 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT-L 98 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE-E
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE-E
Confidence 345567899999999999999999999999999987754 2677 99999999999999999999873 32221 2
Q ss_pred EEEeCC
Q 040490 101 FFTMSD 106 (128)
Q Consensus 101 fv~f~~ 106 (128)
-|+|..
T Consensus 99 rI~~ak 104 (130)
T 3zzy_A 99 RIDFSK 104 (130)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 355654
No 187
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=85.24 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=50.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKV 84 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 84 (128)
...++|||+|||+++++++|+++|.+||.|..+.++.+ ++|||||+|.+.++|+++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH
Confidence 35689999999999999999999999999999988754 689999999999999754
No 188
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-13 Score=80.68 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=55.1
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHhhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 25 EDAK-LFVGNLRYDVDSEK----LAHLFNQA-GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 25 ~~~~-l~v~nL~~~~~~~~----l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
+..+ |||+|||+.+++++ |+++|.+| |.|.++ ++ |+|||.|.+.++|.+|++.|++.. .||..
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999987 55899999 599887 33 899999999999999999999987 45655
Q ss_pred cEEE
Q 040490 98 GFGF 101 (128)
Q Consensus 98 ~~~f 101 (128)
...|
T Consensus 77 ~v~~ 80 (96)
T 2diu_A 77 IVSF 80 (96)
T ss_dssp EEES
T ss_pred EEEe
Confidence 5443
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=5.4e-14 Score=94.80 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe--eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVV--EISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i--~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.+.++|||+|||+++++++|+++|.+||.| ..+.++.+. +..+|+|||+|.+.++|.+|+..||+..
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQ 189 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCC
Confidence 456789999999999999999999999998 888887764 4556999999999999999999999986
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=4.6e-13 Score=81.34 Aligned_cols=81 Identities=15% Similarity=-0.002 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhccCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCc
Q 040490 24 PEDAKLFVGNLRY-----DVDSEKLAHLFNQAGVVEISEVIFYRET-DRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCS 96 (128)
Q Consensus 24 ~~~~~l~v~nL~~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~ 96 (128)
.++++|+|.||.. +-.+++|++.|.+||.|.++.++.++.+ ++++|++||.|.+.++|.+|++.||+.. .||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999952 2367999999999999999999998654 6889999999999999999999999987 5554
Q ss_pred ccEEEEEeCCH
Q 040490 97 HGFGFFTMSDE 107 (128)
Q Consensus 97 ~~~~fv~f~~~ 107 (128)
. .|.|.+.
T Consensus 86 i---~v~~a~~ 93 (105)
T 2pe8_A 86 V---KACFYNL 93 (105)
T ss_dssp C---EEEECCH
T ss_pred E---EEEEcCH
Confidence 4 3445444
No 191
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=3e-13 Score=84.10 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=59.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccE
Q 040490 21 SEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGF 99 (128)
Q Consensus 21 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~ 99 (128)
......++|||+|+ ++++++|+++|.+||.|..+.+. .++|||||+|.+.++|.+|++.|++.. .|+...+
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33456789999995 79999999999999999998875 468899999999999999999999987 4444433
Q ss_pred E
Q 040490 100 G 100 (128)
Q Consensus 100 ~ 100 (128)
.
T Consensus 106 ~ 106 (121)
T 2bz2_A 106 N 106 (121)
T ss_dssp E
T ss_pred E
Confidence 3
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=3.3e-13 Score=93.74 Aligned_cols=67 Identities=34% Similarity=0.381 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 91 (128)
.+..+|||+|||+.+++++|+++|..||.|..+.++.+ .++.++|||||+|.+.++|.+|+..|++.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 35679999999999999999999999999999999999 58999999999999999999999999553
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.45 E-value=3.5e-13 Score=87.93 Aligned_cols=67 Identities=19% Similarity=0.375 Sum_probs=59.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
.....++|||+|||+++++++|+++|..||.|..+ ..++.++|||||+|.+.++|.+|++.|++...
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34567899999999999999999999999987655 46789999999999999999999999998763
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=3.2e-13 Score=92.94 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 23 PPEDAKLFVGNLRYDV---------DSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
....++|||+||+..+ ++++|+.+|.+||+|.++.++.+ +|||||.|.+.++|+.|++.|++...
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 79999999999999999998853 78999999999999999999999875
No 195
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.43 E-value=1.3e-12 Score=91.39 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=59.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
....++|||+|||.++++++|+++|.+||.|.++.++.++ +|||||+|.+.++|.+|++.|++...
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~ 269 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKI 269 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEe
Confidence 3457889999999999999999999999999999988654 58999999999999999999999863
No 196
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=5.7e-13 Score=95.98 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=57.2
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGN--LRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~n--L~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
..++.+|||+| |++.+++++|+++|.+||+|.++.+.. +||||||+|.+.++|++|++.||+..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 56678999998 588999999999999999998876542 47999999999999999999999987
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.9e-12 Score=77.40 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=59.1
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 040490 22 EPPEDAKLFVGNLRYDVD-----------SEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
.+.+.++|+|.||..... +++|+++|.+||.|..+.+ .++ .++|||||+|.+.++|.+|++.|++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456788999999944432 5799999999999999955 543 3799999999999999999999999
Q ss_pred cc-cCCcccE
Q 040490 91 YE-TGCSHGF 99 (128)
Q Consensus 91 ~~-~~~~~~~ 99 (128)
.. .|+...+
T Consensus 87 ~~~~gr~l~v 96 (112)
T 2dit_A 87 RWFGGRQITA 96 (112)
T ss_dssp CEETTEECEE
T ss_pred CEECCcEEEE
Confidence 86 4444433
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.38 E-value=9e-12 Score=82.79 Aligned_cols=73 Identities=25% Similarity=0.337 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc--CCcccEE
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAG-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET--GCSHGFG 100 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~~~~~~~ 100 (128)
++.++|||+|||+++++++|+++|.+|| .|..+.++.+ .+|+|||+|.+.++|.+|+..|++... |+.....
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999988654 278999999999999999999999874 4554444
Q ss_pred E
Q 040490 101 F 101 (128)
Q Consensus 101 f 101 (128)
|
T Consensus 193 ~ 193 (198)
T 1qm9_A 193 F 193 (198)
T ss_dssp E
T ss_pred e
Confidence 4
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.34 E-value=2e-11 Score=83.21 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=59.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQAG-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETG 94 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 94 (128)
++.++|||+|||+++++++|+++|..|| .|..+.++.. .+|+|||+|.+.++|.+|++.|++...+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 4468999999999999999999999999 9999988653 3789999999999999999999998743
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.32 E-value=8.9e-12 Score=75.60 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=62.2
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 25 EDAKLFVGNL--RYDVD--------SEKLAHLFNQAGVVEISEVIFYRET--DRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 25 ~~~~l~v~nL--~~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+++.|.+.|+ |.+.. +++|++.|.+||.|.++.+++++.+ +.++|++||.|.+.++|.+|++.||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678888887 43443 2689999999999999999988754 3679999999999999999999999987
Q ss_pred -cCCcccEEE
Q 040490 93 -TGCSHGFGF 101 (128)
Q Consensus 93 -~~~~~~~~f 101 (128)
.||.....|
T Consensus 84 f~GR~i~v~~ 93 (105)
T 3v4m_A 84 FANRVVVTKY 93 (105)
T ss_dssp ETTEECEEEE
T ss_pred eCCCEEEEEE
Confidence 555554444
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=2.4e-12 Score=78.01 Aligned_cols=68 Identities=25% Similarity=0.211 Sum_probs=55.4
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 31 VGNLRYDVDSEKLAHLF------------NQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 31 v~nL~~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
+.+||+.+++++|++.| .+||.|.++.++.++ +++++|||||.|.+.++|.+|++.|++.. .||..
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777787777666 999999999999875 47889999999999999999999999986 45554
Q ss_pred cE
Q 040490 98 GF 99 (128)
Q Consensus 98 ~~ 99 (128)
.+
T Consensus 99 ~v 100 (104)
T 1jmt_A 99 HA 100 (104)
T ss_dssp CE
T ss_pred EE
Confidence 43
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.27 E-value=3.5e-11 Score=74.44 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCC--CCC---CHHHHHHHhhccCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhcCcc-c
Q 040490 24 PEDAKLFVGNLR--YDV---DSEKLAHLFNQAGVVEISEVIFYRE----TDRSTGFGFVTMSTVEEAEKVVEMFNRYE-T 93 (128)
Q Consensus 24 ~~~~~l~v~nL~--~~~---~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~ 93 (128)
+++++|++.|+- .++ -+++|++.|.+||.|.++.++.++. ++.++|++||.|.+.++|.+|++.||+.. .
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 367899999983 222 3589999999999999999999864 35678999999999999999999999987 5
Q ss_pred CCcccEEEE
Q 040490 94 GCSHGFGFF 102 (128)
Q Consensus 94 ~~~~~~~fv 102 (128)
||.....|.
T Consensus 98 GR~i~v~~~ 106 (118)
T 3ue2_A 98 GRKVVAEVY 106 (118)
T ss_dssp TEECEEEEE
T ss_pred CcEEEEEEc
Confidence 655544443
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.1e-10 Score=70.11 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=52.5
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 040490 26 DAKLFVGNLR-------YDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYETGCSH 97 (128)
Q Consensus 26 ~~~l~v~nL~-------~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 97 (128)
..+|-|.-.. .++++++|+++|.+||.|.++.++ ++++|||||+|.+.++|..|++.+++. .++..
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~-~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGL-VDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBC-SSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCC-CCCeE
Confidence 4566665332 468999999999999999999887 367999999999999999999986654 34444
No 204
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.19 E-value=5.3e-11 Score=76.64 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=57.2
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc------------------------------------------
Q 040490 55 ISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE------------------------------------------ 92 (128)
Q Consensus 55 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~------------------------------------------ 92 (128)
++.++++.. .++||+||+|.+.++|++|++.+++..
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 355666643 689999999999999999998776310
Q ss_pred ----------------------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 ----------------------------TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ----------------------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+++++||+||+|.+.++|++|+..|||..+...
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 688999999999999999999999999776543
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.8e-10 Score=71.30 Aligned_cols=68 Identities=18% Similarity=0.065 Sum_probs=59.7
Q ss_pred CCCCCCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHhcCc
Q 040490 18 VDYSEPPEDAKLFVGNLRYD-VDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMST-VEEAEKVVEMFNRY 91 (128)
Q Consensus 18 ~~~~~~~~~~~l~v~nL~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~~~ 91 (128)
..+-.-+.++.|||+||+++ ++.++|+++|..||+|..|.++.+.. .|||.|.+ ..+|..+++.++..
T Consensus 10 ~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~ 79 (121)
T 1owx_A 10 HGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNG 79 (121)
T ss_dssp CCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTS
T ss_pred cCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcC
Confidence 34456678999999999999 99999999999999999999988764 49999999 89999999988643
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.01 E-value=3.6e-09 Score=64.96 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=57.9
Q ss_pred CCCCCeEEEcCCCCCCC----------HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYDVD----------SEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
+.+++.|.+.|+=.... +++|++.|.+||.|.++.+..+. .+|++||.|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567788888722211 24788999999999999886542 58999999999999999999999987
Q ss_pred -cCCcccEEEE
Q 040490 93 -TGCSHGFGFF 102 (128)
Q Consensus 93 -~~~~~~~~fv 102 (128)
.||.....|.
T Consensus 80 f~GR~i~v~~~ 90 (114)
T 3s6e_A 80 FAGKMITAAYV 90 (114)
T ss_dssp ETTEECEEEEE
T ss_pred ECCEEEEEEEE
Confidence 5665554443
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.60 E-value=3e-07 Score=62.10 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=52.2
Q ss_pred CCHHHHHHHhhccCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcccEEE
Q 040490 38 VDSEKLAHLFNQAGVVEISEVIFYRE----TDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHGFGF 101 (128)
Q Consensus 38 ~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~f 101 (128)
-.+++|++.|.+||.|.++.+..+.. +++++|++||+|.+.++|.+|++.|+|.. .||.....|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 44578999999999999999986643 44889999999999999999999999987 566654443
No 208
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.53 E-value=2.6e-07 Score=58.81 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=52.0
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-cCc-----------------------------c---------------------
Q 040490 64 TDRSTGFGFVTMSTVEEAEKVVEMF-NRY-----------------------------E--------------------- 92 (128)
Q Consensus 64 ~~~~~g~afv~f~~~~~a~~a~~~l-~~~-----------------------------~--------------------- 92 (128)
..+.+|+++++|.+.++|++|++.+ ++. .
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 4567999999999999999999888 221 0
Q ss_pred -----------------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 -----------------TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 -----------------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
...+++|+||+|.+.++|++|+..|||..+..+.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 2236899999999999999999999998776554
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=5.3e-07 Score=52.74 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=50.5
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cC
Q 040490 24 PEDAKLFVGNLR----YDVDS----EKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TG 94 (128)
Q Consensus 24 ~~~~~l~v~nL~----~~~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~ 94 (128)
++..+|+|.-.+ .++.+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |++.. .|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 455678787665 23434 5788999999999999998874 8999999999999998 99887 34
Q ss_pred Ccc
Q 040490 95 CSH 97 (128)
Q Consensus 95 ~~~ 97 (128)
|..
T Consensus 76 r~L 78 (91)
T 2dnr_A 76 RTI 78 (91)
T ss_dssp EEE
T ss_pred eEE
Confidence 433
No 210
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.39 E-value=1.7e-07 Score=58.93 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=30.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 5788999999999999999999999998776544
No 211
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.29 E-value=8.2e-07 Score=50.63 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=30.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+++++||+||+|.+.++|++|+..|||..+..+
T Consensus 43 ~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 43 DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp TTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 678999999999999999999999999988776
No 212
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=1.8e-06 Score=50.80 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=49.6
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 23 PPEDAKLFVGNLRYD-----VDS----EKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~-----~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
-++..||+|.-++.+ +.+ .+|.+.|..||.+..+++..++ +||+|.+.++|.+|++ |++..
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 455678889877643 333 4678899999999999998874 9999999999999998 99886
No 213
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.23 E-value=1e-06 Score=51.22 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=30.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
+|+++|||||+|.+.++|++|+..|||..+..+.+
T Consensus 41 ~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 41 NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 78999999999999999999999999987766543
No 214
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.21 E-value=1.9e-06 Score=51.22 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=30.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
+++++|||||+|.+.++|++|+..|||..+..
T Consensus 50 tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 50 TGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp TTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 58999999999999999999999999988776
No 215
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.19 E-value=1.3e-06 Score=51.88 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+++++|||||+|.++++|++|+..|||..+..+.
T Consensus 57 tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 6899999999999999999999999998775543
No 216
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.19 E-value=1.3e-06 Score=52.99 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=30.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+++++|||||+|.+.++|++|+..|||..+..+.
T Consensus 44 tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 44 TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 6899999999999999999999999998776543
No 217
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.11 E-value=1.4e-06 Score=50.82 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=29.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
...++||+||+|.++++|++|++.|||..+..+.
T Consensus 39 l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~ 72 (89)
T 2wbr_A 39 PYLNQGIALCKYTTREEANKAQMALNNCVLANTT 72 (89)
T ss_dssp EETTTTEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 4458999999999999999999999998776554
No 218
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.10 E-value=4.5e-05 Score=44.97 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=48.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 040490 22 EPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFN 89 (128)
Q Consensus 22 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 89 (128)
.+...+.+++ .+|+++...+|.++|..||. ..|.++-|- .|||.|.+++.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3444566666 99999999999999999984 467777763 69999999999999998664
No 219
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.10 E-value=1.9e-06 Score=50.93 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=27.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQA 121 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~ 121 (128)
+++++|||||+|.+.++|++|++.|||..
T Consensus 49 tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 49 TQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp SSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred CCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 68999999999999999999999999975
No 220
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.08 E-value=4.2e-06 Score=52.07 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=30.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+++++|||||+|.+.++|++|+..|||..+..+.
T Consensus 68 ~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 68 SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 6789999999999999999999999998876654
No 221
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.08 E-value=5.5e-06 Score=48.87 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=30.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+++++|||||+|.+.++|++|++.|||..+....
T Consensus 59 ~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 59 TGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp TCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 5788999999999999999999999998776554
No 222
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.05 E-value=3.5e-06 Score=50.57 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=30.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
.++++||+||+|.+.++|++|+..|||+.+..+.
T Consensus 64 ~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 64 GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 4678999999999999999999999998776544
No 223
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.03 E-value=6e-07 Score=66.65 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=29.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++||||+|.+.++|++||..|||..+...
T Consensus 140 tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 140 SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred CCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence 678899999999999999999999999876543
No 224
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=9.7e-06 Score=47.28 Aligned_cols=34 Identities=35% Similarity=0.483 Sum_probs=30.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 43 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 43 TGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 5888999999999999999999999998776544
No 225
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.02 E-value=4.6e-06 Score=50.16 Aligned_cols=33 Identities=12% Similarity=-0.068 Sum_probs=29.4
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++|++||+|.+.++|.+|+..|||+.+..+.
T Consensus 53 ~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 53 DDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp TTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 578999999999999999999999999876543
No 226
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.99 E-value=5.9e-06 Score=46.96 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=29.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 39 ~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 71 (83)
T 3md1_A 39 TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 71 (83)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCccceEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 688899999999999999999999999876543
No 227
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.99 E-value=2.4e-06 Score=51.13 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=30.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+|+++|||||+|.+.++|++|+..|||..+..+
T Consensus 57 ~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 57 DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp TTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 678999999999999999999999999877665
No 228
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.99 E-value=6e-06 Score=47.36 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=29.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 44 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 44 TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 678899999999999999999999999776543
No 229
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.98 E-value=6.4e-06 Score=49.50 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=29.1
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++|++||+|.+.++|++|+..|||+.+..+.
T Consensus 56 ~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 56 VPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp CTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 367999999999999999999999998876544
No 230
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=1.1e-05 Score=48.03 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=30.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++||||+|.+.++|++|+..|||..+....
T Consensus 61 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 61 TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp TSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 5888999999999999999999999998776544
No 231
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=1.3e-05 Score=47.43 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=30.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 50 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 50 TQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp SCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 6778999999999999999999999998776544
No 232
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.96 E-value=1.3e-05 Score=46.48 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=30.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 44 ~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 44 NGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 6789999999999999999999999998776544
No 233
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=1.4e-05 Score=47.41 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=29.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCC-ccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQA-RILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~-~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|+|.. +....
T Consensus 47 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 47 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 67899999999999999999999999987 55443
No 234
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.95 E-value=7.2e-06 Score=47.84 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=29.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+..+
T Consensus 53 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 85 (95)
T 2ek1_A 53 KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (95)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 678899999999999999999999999876544
No 235
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.95 E-value=1.4e-05 Score=47.56 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=29.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|||..+..
T Consensus 52 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 52 DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 67889999999999999999999999987665
No 236
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=7.4e-06 Score=48.12 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=29.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 53 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 85 (98)
T 2cqp_A 53 KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (98)
T ss_dssp SSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred CCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 678899999999999999999999999866543
No 237
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.95 E-value=7e-06 Score=46.86 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 45 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 45 TEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp TTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 678899999999999999999999999876543
No 238
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=8.9e-06 Score=47.86 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=30.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 48 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 48 TGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 6788999999999999999999999998776554
No 239
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.94 E-value=8.9e-06 Score=47.66 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=29.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 40 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 72 (96)
T 2x1f_A 40 TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR 72 (96)
T ss_dssp TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 578899999999999999999999999876543
No 240
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=1.2e-05 Score=47.81 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 53 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 53 TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 6889999999999999999999999998766543
No 241
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=7.3e-06 Score=48.50 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=29.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 50 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 50 TGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 688899999999999999999999999876543
No 242
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.93 E-value=1.5e-05 Score=47.27 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=30.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 51 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 5788999999999999999999999998776544
No 243
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.93 E-value=1.3e-05 Score=48.85 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++||||+|.+.++|++|+..|||..+....
T Consensus 44 ~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 44 TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 6788999999999999999999999998776543
No 244
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.92 E-value=1.4e-05 Score=48.30 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=30.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 7889999999999999999999999998775543
No 245
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=1.1e-05 Score=47.82 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 46 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 46 TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 6788999999999999999999999998776543
No 246
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.91 E-value=9.8e-06 Score=47.88 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=29.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+. |||..+....
T Consensus 54 ~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~ 86 (101)
T 1fj7_A 54 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNE 86 (101)
T ss_dssp EETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBC
T ss_pred CCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcE
Confidence 68899999999999999999998 9998776544
No 247
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.91 E-value=1.9e-05 Score=46.96 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHhcCcc---------cCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q 040490 77 TVEEAEKVVEMFNRYE---------TGCSHGFGFFTMSDESKLNDAIAALDGQAR 122 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~---------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~ 122 (128)
++++.......+-... ++++++|+||+|.+.++|++|+..|||..+
T Consensus 26 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 26 DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 3455555555443222 588999999999999999999999999765
No 248
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.91 E-value=1.6e-05 Score=47.85 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=30.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 64 ~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 64 TGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 6788999999999999999999999998776554
No 249
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=5.7e-06 Score=47.32 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=28.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|||..+..
T Consensus 43 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 43 TNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp SCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 68889999999999999999999999876543
No 250
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=8.4e-06 Score=47.65 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=29.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 44 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (96)
T 1x5t_A 44 TGNSKGYAFINFASFDASDAAIEAMNGQYLCNR 76 (96)
T ss_dssp TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE
T ss_pred CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 678899999999999999999999999876543
No 251
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=8.9e-06 Score=48.25 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=30.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 51 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 51 TKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp SCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 5889999999999999999999999998776544
No 252
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=1.1e-05 Score=48.72 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=29.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 61 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 61 TGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp TCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 578899999999999999999999999876543
No 253
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.90 E-value=2e-05 Score=46.92 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=29.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHh-cCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAAL-DGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~-~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..| ||..+....
T Consensus 54 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 54 TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred CCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 5778999999999999999999999 887766543
No 254
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.90 E-value=8.7e-06 Score=49.48 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.+++++||||+|.+.++|++|+..|+|..+...
T Consensus 41 ~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~ 73 (115)
T 4f25_A 41 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73 (115)
T ss_dssp TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 466799999999999999999999999876543
No 255
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.90 E-value=1.5e-05 Score=47.16 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=29.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+++++|||||+|.+.++|++|+ .|||..+....
T Consensus 57 ~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 57 PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp TCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 6889999999999999999999 89998776554
No 256
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.90 E-value=8.9e-06 Score=52.24 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+|+++|||||+|.+.++|++||..|||..+....
T Consensus 95 tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 95 NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 7899999999999999999999999998766543
No 257
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.89 E-value=1.4e-05 Score=44.53 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=28.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+. +||..+....
T Consensus 37 ~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~ 69 (75)
T 2mss_A 37 TNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKM 69 (75)
T ss_dssp STTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred CCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence 68889999999999999999998 8988776554
No 258
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.89 E-value=2.1e-05 Score=48.85 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=30.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 84 tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 84 SRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp SSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 5789999999999999999999999998776544
No 259
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=1e-05 Score=47.63 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=29.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 46 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 46 TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 678899999999999999999999999766543
No 260
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.0002 Score=43.16 Aligned_cols=71 Identities=10% Similarity=0.067 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcc
Q 040490 24 PEDAKLFVGNLRYDVDSEKLAHLFNQA-----GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSH 97 (128)
Q Consensus 24 ~~~~~l~v~nL~~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~ 97 (128)
...++|-+-+||..+++..|+.+.+.+ |.+..+.+..+. +-|+|+|.+...|-+|.=.|+|.. .|+..
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347888889999999999999999999 999999888774 369999999999999988899987 45444
Q ss_pred cEE
Q 040490 98 GFG 100 (128)
Q Consensus 98 ~~~ 100 (128)
.++
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 444
No 261
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.87 E-value=1e-05 Score=49.67 Aligned_cols=33 Identities=24% Similarity=0.041 Sum_probs=28.8
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++|++||+|.+.++|.+|+..|||+.+..+.
T Consensus 68 ~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 68 AEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp CEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 356799999999999999999999999876544
No 262
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=7.9e-06 Score=47.98 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=27.8
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 95 CSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 95 ~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++|+||+|.+.++|++|+..|||..+...
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 7899999999999999999999999876543
No 263
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=2.4e-05 Score=45.95 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=28.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+. |+|..+....
T Consensus 48 ~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 48 KQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp TCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred CCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 57899999999999999999998 9988765543
No 264
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=1.3e-05 Score=47.45 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=28.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|||..+..
T Consensus 53 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 53 TGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp SCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 67899999999999999999999999987654
No 265
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=1.1e-05 Score=47.52 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=29.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 54 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 54 AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 588899999999999999999999999766543
No 266
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=9e-06 Score=49.06 Aligned_cols=31 Identities=10% Similarity=-0.032 Sum_probs=27.2
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 95 CSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 95 ~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++|+||+|.+.++|++|+..|||..+..+
T Consensus 61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 61 GPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 5679999999999999999999999876543
No 267
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.83 E-value=1.5e-05 Score=47.56 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=29.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 66 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 66 SGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 678899999999999999999999999876543
No 268
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.83 E-value=1.5e-05 Score=48.23 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=29.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 53 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 53 TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 688899999999999999999999999765543
No 269
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.83 E-value=1.7e-05 Score=47.59 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=29.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 64 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 64 TGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp TSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 678899999999999999999999999876543
No 270
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=2e-05 Score=46.21 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHhcCc----ccCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 77 TVEEAEKVVEMFNRY----ETGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~----~~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++.......+-.. ..+++++|+||+|.+.++|++|+..|||..+....
T Consensus 32 t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 32 RVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred cHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 345555555544332 15688999999999999999999999998776554
No 271
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=1e-05 Score=47.11 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=28.7
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|||..+..
T Consensus 53 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 53 SRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 57899999999999999999999999976654
No 272
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=3.1e-05 Score=46.65 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|||..+..
T Consensus 62 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 62 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 67889999999999999999999999988743
No 273
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.81 E-value=1.5e-05 Score=48.17 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=29.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 63 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 63 TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 688999999999999999999999999876543
No 274
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.81 E-value=2e-05 Score=45.44 Aligned_cols=34 Identities=38% Similarity=0.560 Sum_probs=29.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
++++++|+||+|.+.+ |++|+..|||..+....+
T Consensus 39 ~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 39 TKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp SCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred CCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 5889999999999999 999999999988765543
No 275
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.81 E-value=2.6e-05 Score=47.87 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=30.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 60 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 60 TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 6788999999999999999999999998776544
No 276
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.80 E-value=1.9e-05 Score=46.02 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.7
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDG 119 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g 119 (128)
+++++|||||+|.+.++|++|+..+++
T Consensus 40 t~~~rg~aFV~F~~~~~A~~Ai~~~~~ 66 (91)
T 2lxi_A 40 SGQSRGFAFVEFSHLQDATRWMEANQH 66 (91)
T ss_dssp SCCCSSEEEEECSSHHHHHHHHHTTTT
T ss_pred CCCcCceEEEEecCHHHHHHHHHhcCC
Confidence 689999999999999999999998754
No 277
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.79 E-value=2.5e-05 Score=46.63 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=28.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
.++++|||||+|.+.++|++|+. ++|..+....
T Consensus 48 ~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~ 80 (103)
T 1s79_A 48 HKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETD 80 (103)
T ss_dssp TTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTT
T ss_pred CCCCccEEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence 48899999999999999999999 8887766554
No 278
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.79 E-value=1.2e-05 Score=47.47 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=28.7
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|||..+..
T Consensus 49 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 49 NGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp SSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 68899999999999999999999999876543
No 279
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=1.2e-05 Score=46.86 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=28.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|||..+..
T Consensus 54 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 54 TRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp SCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 57889999999999999999999999976654
No 280
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.78 E-value=1.5e-05 Score=46.46 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=29.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.+++++|+||+|.+.++|++|+..|||..+...
T Consensus 53 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 53 EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 578899999999999999999999999876543
No 281
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=1.1e-05 Score=46.73 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=27.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+. |||..+..
T Consensus 46 ~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 46 HGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp TSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 68899999999999999999999 99976654
No 282
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.76 E-value=2.9e-05 Score=46.45 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=28.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
.|+++|||||+|.+.++|++||. +|+..+..+.
T Consensus 51 ~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 51 DGKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp TSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 58899999999999999999999 9987665443
No 283
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=1.5e-05 Score=48.92 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+++++|||||+|.+.++|++||. |||..+..+.
T Consensus 63 ~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 95 (124)
T 1wel_A 63 NGKATGEGFVEFRNEADYKAALC-RHKQYMGNRF 95 (124)
T ss_dssp TSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSC
T ss_pred CCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 78899999999999999999999 9998776554
No 284
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=1.1e-05 Score=47.75 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=28.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|||..+..
T Consensus 50 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2cqb_A 50 TEKHRGFAFVEFELAEDAAAAIDNMNESELFG 81 (102)
T ss_dssp SCCCSSEEEECCSSHHHHHHHHHHHTTEEETT
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 57889999999999999999999999876543
No 285
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.76 E-value=1e-05 Score=47.36 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=28.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|+|..+..
T Consensus 49 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 49 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 68899999999999999999999999876543
No 286
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.76 E-value=1.8e-05 Score=46.97 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=28.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+ .|||..+...
T Consensus 52 ~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 52 TDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp SCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 5889999999999999999999 8999766543
No 287
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.75 E-value=1.3e-05 Score=48.60 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHhc-Ccc-----cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 77 TVEEAEKVVEMFN-RYE-----TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 77 ~~~~a~~a~~~l~-~~~-----~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+.++........- ... ..+++|||||+|.+.++|++|+..|||..+...
T Consensus 41 te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 41 SWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp CHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4555555555443 121 457899999999999999999999999766543
No 288
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=1.9e-05 Score=48.18 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHhcCcc---cCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q 040490 77 TVEEAEKVVEMFNRYE---TGCSHGFGFFTMSDESKLNDAIAALDGQAR 122 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~---~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~ 122 (128)
++++-......+-... .-..++||||+|.+.++|++|+..|||+.+
T Consensus 40 te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 40 SRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3445554444333222 334589999999999999999999999865
No 289
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=2.4e-05 Score=46.55 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=28.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++||. +|+..+..+.
T Consensus 51 ~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (102)
T 1wez_A 51 DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRY 83 (102)
T ss_dssp SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSC
T ss_pred CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 78999999999999999999994 7887665443
No 290
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=2.8e-05 Score=46.85 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=29.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 52 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 52 DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 678899999999999999999999999876543
No 291
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.73 E-value=2.4e-05 Score=44.79 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=27.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 96 SHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 96 ~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+++|+||+|.+.++|++|+..|||..+...
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQ 75 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCCeECCe
Confidence 899999999999999999999999876544
No 292
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.72 E-value=2.3e-05 Score=48.62 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCC----CccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ----ARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~----~~~~~~ 126 (128)
+++++|||||+|.+. +|.+|+..|||. .+..+.
T Consensus 63 tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 63 TQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp SSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 789999999999999 999999999998 555443
No 293
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.72 E-value=3.6e-05 Score=45.97 Aligned_cols=32 Identities=19% Similarity=0.089 Sum_probs=27.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhc-C-CCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALD-G-QARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~-g-~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|+ | ..+..
T Consensus 48 ~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 48 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp TTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred CCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 56899999999999999999999995 3 55443
No 294
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=4.3e-05 Score=45.48 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=28.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+++++||+||+|.++++|++|+.. ++..+..+
T Consensus 53 ~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 53 QGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp SSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 789999999999999999999997 87766544
No 295
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.70 E-value=1.8e-05 Score=48.05 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=29.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+..|||..+....
T Consensus 78 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 78 TSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp SSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 5788999999999999999999999998765443
No 296
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.70 E-value=1.2e-05 Score=47.12 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=28.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 567889999999999999999999999776543
No 297
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.70 E-value=2.2e-05 Score=49.36 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=29.7
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++||||+|.+.++|++|+..|||..+...
T Consensus 88 ~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 88 EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 688999999999999999999999999876543
No 298
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=1.7e-05 Score=47.92 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=27.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.|+++|||||+|.+.++|++|| .+|+..+..
T Consensus 52 ~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 52 VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp TCCCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCCCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 5889999999999999999999 688876543
No 299
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.70 E-value=3e-05 Score=47.54 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=29.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 72 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 72 SGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 677899999999999999999999999766543
No 300
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=4.9e-05 Score=44.78 Aligned_cols=30 Identities=3% Similarity=0.050 Sum_probs=27.6
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 98 GFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 98 ~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
|++||+|.+.++|++|++.|+|..+..+.+
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 999999999999999999999998877653
No 301
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.69 E-value=2.4e-05 Score=48.88 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHhcCcc---------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 77 TVEEAEKVVEMFNRYE---------TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~---------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++.......+-... ++++++||||+|.+.++|++|+..|||..+...
T Consensus 55 ~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 55 DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp CHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3455555555443322 578899999999999999999999999766543
No 302
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=3.1e-05 Score=46.35 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=28.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 57 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 57 RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 566899999999999999999999999866543
No 303
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.68 E-value=5.4e-05 Score=45.65 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=29.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++||||+|.+.++|++|+..|||..+....
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5777999999999999999999999998776543
No 304
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=2.9e-05 Score=46.06 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=27.6
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+++++|+||+|.+.++|++|+ .|||..+...
T Consensus 54 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 54 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp TSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 889999999999999999999 9999766543
No 305
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.67 E-value=2.4e-05 Score=44.98 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=28.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+ .|||..+...
T Consensus 44 ~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~ 75 (89)
T 3ucg_A 44 SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR 75 (89)
T ss_dssp SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE
T ss_pred CCCcceEEEEEECCHHHHHHHH-hcCCCEECCc
Confidence 6888999999999999999999 9999876543
No 306
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=3.9e-05 Score=45.94 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=28.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhc------CCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALD------GQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~------g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|| |..+..
T Consensus 53 ~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 53 TEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp SCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 57899999999999999999999999 765543
No 307
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=5.6e-05 Score=45.58 Aligned_cols=35 Identities=6% Similarity=-0.172 Sum_probs=30.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
.-+.++|+||+|.+.++|++|+..|||..+...++
T Consensus 42 i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 42 LPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp CCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred EeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 44688999999999999999999999987765543
No 308
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.65 E-value=1.8e-05 Score=45.65 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=27.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 95 CSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 95 ~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++|+||+|.+.++|++|+..|||..+...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 68 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK 68 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 7899999999999999999999999766543
No 309
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.65 E-value=6.3e-05 Score=46.16 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=29.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
..++++||||+|.+.++|++|+..|||..+....
T Consensus 69 i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 69 MDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred EeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4578999999999999999999999998775543
No 310
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=2.7e-05 Score=47.13 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=26.0
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh---cCCCc
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAAL---DGQAR 122 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~---~g~~~ 122 (128)
|++++||||+|.+.++|++|+..| +|+.+
T Consensus 49 g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp SCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 789999999999999999999998 77643
No 311
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.62 E-value=3.1e-05 Score=52.72 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=31.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
++++++|+||+|.+.++|++||..|||..+....+
T Consensus 108 tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 108 NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp TCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 78999999999999999999999999988765543
No 312
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.61 E-value=5.9e-05 Score=44.29 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=28.9
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
..+.++|+||+|.+.++|++|+..|||..+....
T Consensus 47 ~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 47 IHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp EETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred EecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 3456899999999999999999999998766543
No 313
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=4.2e-05 Score=42.66 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=26.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..++ ..+..
T Consensus 38 ~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g 68 (77)
T 1uaw_A 38 TKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS 68 (77)
T ss_dssp SSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS
T ss_pred CCCcCceEEEEEcCHHHHHHHHHhCC-CccCC
Confidence 58889999999999999999999877 54443
No 314
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=9.5e-05 Score=43.22 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=27.5
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 96 SHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 96 ~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+++|+||+|.+.++|++|+..|||..+....
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 5899999999999999999999998776554
No 315
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.60 E-value=2.7e-05 Score=48.45 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=28.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+..|||..+..
T Consensus 101 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 101 TEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp TCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 57899999999999999999999999876544
No 316
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=4.4e-05 Score=46.06 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=28.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
...++||+||+|.+.++|++|+..|||+.+..+
T Consensus 60 ~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 60 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp TTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred cCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 445799999999999999999999999876543
No 317
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=3.6e-05 Score=46.22 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=28.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.+++++|+||+|.+.++|++|+..|||..+...
T Consensus 65 ~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 65 ERGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp TTBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 456799999999999999999999999876544
No 318
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.59 E-value=2.2e-05 Score=49.30 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=28.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.++++||+||+|.+.++|++|+. +||..+..+
T Consensus 84 ~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 84 EGRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp SSCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 58899999999999999999999 988766543
No 319
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=5e-05 Score=44.74 Aligned_cols=81 Identities=15% Similarity=0.079 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc---cCCcccEEEEEeCCHHH
Q 040490 34 LRYDVDSEKLAHLFNQAGV-VEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE---TGCSHGFGFFTMSDESK 109 (128)
Q Consensus 34 L~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---~~~~~~~~fv~f~~~~~ 109 (128)
.|...+...+......-.. -..+.+ ..-.. -.++++.......+-... ..++++|+||+|.+.++
T Consensus 7 ~p~~~~~~~~~~~~~~~~~~~~~l~V-~nlp~----------~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~ 75 (101)
T 2la4_A 7 LPPQVNPQAVDHIIRSAPPRVTTAYI-GNIPH----------FATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQ 75 (101)
T ss_dssp CCSSSCHHHHHHHHTTSCSSCCEEEE-ESCCT----------TCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHH
T ss_pred CCCCCChhhhhhhhhcCCCCCCEEEE-cCCCc----------ccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHH
Confidence 4566677777766655322 122222 11100 013445444444332222 34679999999999999
Q ss_pred HHHHHHHhcCCCccCC
Q 040490 110 LNDAIAALDGQARILP 125 (128)
Q Consensus 110 a~~a~~~~~g~~~~~~ 125 (128)
|++|+..|||..+...
T Consensus 76 A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 76 AAVCIVALANFPFQGR 91 (101)
T ss_dssp HHHHHHHHTTCEETTE
T ss_pred HHHHHHHhCCCeECCe
Confidence 9999999999876544
No 320
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=9.9e-05 Score=42.54 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 97 HGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 97 ~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++|+||+|.+.++|++|+..|||..+....
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 789999999999999999999997765543
No 321
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=6.5e-05 Score=44.40 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=27.7
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
..+++|+||+|.+.++|++|+..|||..+...
T Consensus 52 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 52 RGSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp TTTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 44799999999999999999999999876543
No 322
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.58 E-value=3.7e-05 Score=45.07 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=28.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.+++++|+||+|.+.++|++|+..|||..+..
T Consensus 45 i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 45 MDPPRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp EETTTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred ecCCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 45789999999999999999999999976543
No 323
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.58 E-value=5.4e-05 Score=48.20 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=29.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+..|||..+...
T Consensus 77 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 77 KKTACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 578999999999999999999999999876543
No 324
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.57 E-value=5.8e-05 Score=48.60 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=29.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++||||+|.+.++|++||..|||..+...
T Consensus 110 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 142 (165)
T 1rk8_A 110 TGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 142 (165)
T ss_dssp TSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 678899999999999999999999999766543
No 325
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.57 E-value=0.00021 Score=42.20 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=46.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
..++| ++|+++...+|.++|..|| ...|.++-|- .|||.|.+++.|..|+..+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~~ 61 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSKY 61 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHTT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhccc
Confidence 34555 9999999999999999999 4577787763 699999999999999997753
No 326
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.57 E-value=4.7e-05 Score=45.02 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHhcCcc-------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 77 TVEEAEKVVEMFNRYE-------TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~-------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++.......+-... .+.+++|+||+|.+.++|++|+..|||..+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 28 TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 3455555555443222 34578999999999999999999999976554
No 327
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.56 E-value=2.4e-05 Score=47.78 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=27.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.++++||+||+|.+.++|++||. +||..+..
T Consensus 57 ~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 57 EGRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 58899999999999999999999 88876543
No 328
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.56 E-value=4.4e-05 Score=46.54 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=28.7
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
...+|++||+|.+.++|++|+..|||+.+..+.
T Consensus 52 ~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 52 NSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp TCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999999999876554
No 329
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.54 E-value=5.7e-05 Score=46.18 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=28.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++++|+||+|.+.++|++|+ .|||..+...
T Consensus 74 ~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 105 (124)
T 2jwn_A 74 SGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR 105 (124)
T ss_dssp TSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE
T ss_pred CCCcccEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 6888999999999999999999 8999876543
No 330
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.54 E-value=6.9e-05 Score=44.12 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=27.4
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 96 SHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 96 ~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+++|+||+|.+.++|++|+..|||..+....
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 7899999999999999999999988765544
No 331
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.52 E-value=0.00011 Score=42.97 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=26.3
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 95 CSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 95 ~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
+.++|+||+|.+.++|++|+..|||..+.
T Consensus 51 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 51 KGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp SSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34889999999999999999999998776
No 332
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.52 E-value=3.8e-05 Score=45.00 Aligned_cols=29 Identities=10% Similarity=-0.079 Sum_probs=26.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 97 HGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 97 ~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++|+||+|.+.++|++|+..|||..+..+
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 89999999999999999999999766543
No 333
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.66 E-value=1.3e-05 Score=48.59 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=30.4
Q ss_pred ccCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 92 ETGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 92 ~~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
.++++++|+||+|.+.++|++|+..|||..+....
T Consensus 52 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 52 ETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 46889999999999999999999999997765443
No 334
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.51 E-value=6.4e-05 Score=42.92 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=27.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
..+.++|+||+|.+.++|++|+ .|||..+...
T Consensus 49 ~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 49 INQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp ECSSSSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred ecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 4566999999999999999999 9999876544
No 335
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=5.6e-05 Score=43.84 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHhcC-cc--cCCcccEEEEEeCCHHHHHHHHHHhcC-CCccC
Q 040490 77 TVEEAEKVVEMFNR-YE--TGCSHGFGFFTMSDESKLNDAIAALDG-QARIL 124 (128)
Q Consensus 77 ~~~~a~~a~~~l~~-~~--~~~~~~~~fv~f~~~~~a~~a~~~~~g-~~~~~ 124 (128)
++++.......+-. .. .-.+++|+||+|.+.++|++|+..||| ..+..
T Consensus 21 t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 21 TADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 45555555554433 11 225789999999999999999999999 65543
No 336
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=2.9e-05 Score=46.86 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=27.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++|+ .|||..+..
T Consensus 63 ~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 93 (114)
T 2cq4_A 63 SRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG 93 (114)
T ss_dssp SSSCCCCEEEEESCGGGHHHHH-HHTTEEETT
T ss_pred CCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC
Confidence 5889999999999999999999 999976644
No 337
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.50 E-value=0.00013 Score=48.93 Aligned_cols=35 Identities=23% Similarity=0.040 Sum_probs=31.3
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPHF 127 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~~ 127 (128)
+++++|++||+|.+.++|++|+..|||+.+..+.+
T Consensus 171 ~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i 205 (222)
T 3dxb_A 171 DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 205 (222)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CcCceeEEEEEECCHHHHHHHHHHhcCceECCeEE
Confidence 44899999999999999999999999998877654
No 338
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.48 E-value=0.00013 Score=47.69 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhcCcc--------cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 77 TVEEAEKVVEMFNRYE--------TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~--------~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++.......+-... ++++++|+||+|.+.++|++|+..|||..+....
T Consensus 101 te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 101 SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp CHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 4556555555443222 5888999999999999999999999998765543
No 339
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.47 E-value=9.3e-05 Score=43.48 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=26.5
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 96 SHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 96 ~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.++|+||+|.+.++|++|+..|||..+...
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 489999999999999999999999876543
No 340
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.46 E-value=7.3e-05 Score=41.48 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=27.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
++++++|+||+|.+.++|++|+.. ++..+....
T Consensus 37 ~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 69 (75)
T 1iqt_A 37 TNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSK 69 (75)
T ss_dssp CSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBC
T ss_pred CCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 578899999999999999999985 666555443
No 341
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.46 E-value=0.0014 Score=38.19 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=52.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR--STGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
++|-|.+||+.++++++.+.+..+..+....++....+.+ ..+-|+|.|.+.++.....+.+++..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 4688999999999999999999887766666655543332 24569999999999999999998876
No 342
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.0017 Score=38.60 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=47.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc---c--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 040490 23 PPEDAKLFVGNLRYDVDSEKLAHLFNQ---A--GVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEM 87 (128)
Q Consensus 23 ~~~~~~l~v~nL~~~~~~~~l~~~f~~---~--G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 87 (128)
.....+|.|.|||++++++.|+-.|++ - |++..+.... +-|+|+|.+...+++.+++
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC
Confidence 345688999999999999999999997 2 4777776643 3699999999999999986
No 343
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.43 E-value=0.0002 Score=43.34 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=26.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 98 GFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 98 ~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+|+||+|.+.++|++||..|||..+....
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 99999999999999999999998776543
No 344
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.42 E-value=7.3e-05 Score=45.18 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=25.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDG 119 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g 119 (128)
++++++|+||+|.+.++|++|+..+++
T Consensus 55 ~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 55 TGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp SCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCccceEEEEEECCHHHHHHHHHhCCC
Confidence 588999999999999999999999987
No 345
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.42 E-value=0.00015 Score=46.95 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=28.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
..+.++|+||+|.+.++|++|+..|||..+..
T Consensus 80 ~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 80 TKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp ESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred eCCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 35568899999999999999999999988753
No 346
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=0.00011 Score=41.71 Aligned_cols=32 Identities=6% Similarity=-0.107 Sum_probs=26.8
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-cCCCccCC
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAAL-DGQARILP 125 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~-~g~~~~~~ 125 (128)
-+.++|+||+|.+.++|++|+..| +|..+...
T Consensus 45 ~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 45 VQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp EGGGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred ECCCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 356899999999999999999998 87665443
No 347
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.40 E-value=0.00012 Score=43.98 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=26.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 97 HGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 97 ~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++|+||+|.+.++|++|+..|||..+...
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 89999999999999999999999876543
No 348
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=0.00013 Score=43.57 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHhcCcc---cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 77 TVEEAEKVVEMFNRYE---TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~---~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++.......+-... .-+.++|+||+|.+.++|++|+..|+|..+...
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 89 (109)
T 1x4g_A 38 TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGH 89 (109)
T ss_dssp CHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4455555555443222 223389999999999999999999999766543
No 349
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.39 E-value=9.1e-05 Score=44.11 Aligned_cols=28 Identities=7% Similarity=-0.048 Sum_probs=25.2
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCC
Q 040490 94 GCSHGFGFFTMSDESKLNDAIAALDGQA 121 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a~~~~~g~~ 121 (128)
-+.|++|||+|.+.++|++|+..|++..
T Consensus 54 ~~~kg~AFVef~~~~~A~~Av~~ln~~~ 81 (100)
T 3r27_A 54 MPKKRQALVEFEDVLGACNAVNYAADNQ 81 (100)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred EcCCCEEEEEECCHHHHHHHHHHhcCCC
Confidence 3568999999999999999999998865
No 350
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=8.8e-05 Score=43.53 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHh--cCcc-cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 77 TVEEAEKVVEMF--NRYE-TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 77 ~~~~a~~a~~~l--~~~~-~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++....+..+ -... ....++|+||+|.+.++|++|+..|||..+..
T Consensus 28 t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 28 SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp CHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred CHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 345555555544 1111 34568899999999999999999999976643
No 351
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.00015 Score=44.03 Aligned_cols=28 Identities=7% Similarity=-0.039 Sum_probs=24.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~ 120 (128)
..+.++||||+|.+.++|++|+..|++.
T Consensus 58 i~~~kg~aFVef~~~~~A~~Ai~~l~~~ 85 (112)
T 1x4f_A 58 LMRMKSQAFIEMETREDAMAMVDHCLKK 85 (112)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHHHS
T ss_pred EecCCCEEEEEECCHHHHHHHHHHhccC
Confidence 4567899999999999999999988653
No 352
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.37 E-value=5.8e-05 Score=46.58 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=26.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
+|+++||+||+|.+.++|++||.. |+..+.
T Consensus 64 ~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 64 DGRPTGDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp TSCEEEEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred CCCEeeEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 789999999999999999999986 765443
No 353
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.36 E-value=6.6e-05 Score=47.30 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=28.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
.+++++|+||+|.+.++|++|| .+|+..+..+.
T Consensus 82 ~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~ 114 (139)
T 2hgn_A 82 DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRY 114 (139)
T ss_dssp SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCC
T ss_pred CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEE
Confidence 5889999999999999999999 78887665443
No 354
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.36 E-value=8.3e-05 Score=42.52 Aligned_cols=27 Identities=30% Similarity=0.626 Sum_probs=23.7
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQ 120 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~ 120 (128)
++++++|+||+|.+.++|++|+.. ++.
T Consensus 49 ~g~~~g~afV~f~~~~~a~~A~~~-~~~ 75 (87)
T 3s7r_A 49 TGRSRGFGFILFKDAASVEKVLDQ-KEH 75 (87)
T ss_dssp TCCEEEEEEEEESSTHHHHHHHHS-SCE
T ss_pred CCccccEEEEEECCHHHHHHHHHh-CCC
Confidence 688999999999999999999975 443
No 355
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.36 E-value=0.00013 Score=45.27 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=26.5
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.|+++|||||+|.+.++|++|+.. ++..+..+
T Consensus 80 ~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR 111 (126)
T 2hgm_A 80 EGKITGEAFVQFASQELAEKALGK-HKERIGHR 111 (126)
T ss_dssp SSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTB
T ss_pred CCCCceEEEEEECCHHHHHHHHHH-CCCEECCE
Confidence 588999999999999999999985 66555443
No 356
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.36 E-value=4.9e-05 Score=45.97 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=26.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++++|+||+|.+.++|++||.. |+..+..
T Consensus 53 ~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 53 NGQGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 588999999999999999999987 7765543
No 357
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.0016 Score=39.80 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 040490 14 DGSEVDYSEPPEDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYET 93 (128)
Q Consensus 14 ~~~~~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 93 (128)
++.+.......+.+-|.|-+.|+.. ...+...|.+||.|.+.... ...-+-.|.|.+..+|++||. .|+...
T Consensus 12 ~~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii 83 (119)
T 1wwh_A 12 QGDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIF 83 (119)
T ss_dssp ---------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred CCcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEe
Confidence 3334444455567888899999885 67778899999999887651 123489999999999999998 477665
Q ss_pred CCcccEEEEEeCCHHHH
Q 040490 94 GCSHGFGFFTMSDESKL 110 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a 110 (128)
+...-.+.+-+.+..-.
T Consensus 84 ~g~~mIGV~p~~d~~vi 100 (119)
T 1wwh_A 84 GESIMIGVKPCIDKNVM 100 (119)
T ss_dssp TTTEECEEEECCCHHHH
T ss_pred cCCEEEEEEECCCHHHH
Confidence 55455666666665443
No 358
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.32 E-value=0.00012 Score=43.89 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHhcCcc-cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 77 TVEEAEKVVEMFNRYE-TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~-~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++....+..+-... ..-+++|+||+|.+.++|++|+..|||..+...
T Consensus 41 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 41 KKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp CHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3455544444332221 112789999999999999999999999876543
No 359
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.31 E-value=8.9e-05 Score=43.96 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=26.2
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
++++++|+||+|.+.++|++|+.. ++..+.
T Consensus 54 ~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 54 TNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp SCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 678999999999999999999997 775544
No 360
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=0.00024 Score=42.45 Aligned_cols=27 Identities=0% Similarity=-0.033 Sum_probs=23.8
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCC
Q 040490 95 CSHGFGFFTMSDESKLNDAIAALDGQA 121 (128)
Q Consensus 95 ~~~~~~fv~f~~~~~a~~a~~~~~g~~ 121 (128)
+.++||||+|.+.++|++|+..|++..
T Consensus 49 ~~kg~aFVef~~~~~A~~Ai~~l~~~~ 75 (104)
T 1wex_A 49 PFKRQALVEFENIDSAKECVTFAADVP 75 (104)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhccCC
Confidence 458999999999999999999987654
No 361
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=0.00018 Score=41.36 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHhcCcc-cCCcccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 77 TVEEAEKVVEMFNRYE-TGCSHGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~-~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
++++.......+-... ..-.++|+||+|.+.++|++|+..|||..+...
T Consensus 22 t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 22 TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3445445544433222 122356999999999999999999999776543
No 362
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.27 E-value=0.00022 Score=44.42 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.4
Q ss_pred CcccE-EEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 95 CSHGF-GFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 95 ~~~~~-~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
+.+++ +||+|.+.++|++|+..|||..+..
T Consensus 63 ~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 63 KNNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp ETTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 45677 9999999999999999999987754
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.00023 Score=42.28 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=24.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDG 119 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g 119 (128)
.++++||+||+|.+.++|++|+..+++
T Consensus 50 ~~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 50 SSKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp ESSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred ccCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 468999999999999999999998665
No 364
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.23 E-value=0.00018 Score=41.58 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHhcCcc-cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 77 TVEEAEKVVEMFNRYE-TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~-~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++.......+-... ..-.++|+||+|.+.++|++|+..|||..+..
T Consensus 23 t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 23 TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 3455555544332222 22236699999999999999999999976543
No 365
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.22 E-value=0.00014 Score=43.00 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHhcCcc-cCCcccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 77 TVEEAEKVVEMFNRYE-TGCSHGFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~-~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
++++.......+-... ....++|+||+|.+.++|++|+..|||..+..
T Consensus 24 t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 24 TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 3455555555443322 22347799999999999999999999976543
No 366
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.22 E-value=0.00016 Score=43.11 Aligned_cols=29 Identities=10% Similarity=0.042 Sum_probs=24.7
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCC
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQA 121 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~ 121 (128)
.-+.++||||+|.+.++|++|+..||+..
T Consensus 48 i~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 48 ILNKINEAFIEMATTEDAQAAVDYYTTTP 76 (102)
T ss_dssp ECSSSSCEEEEESSHHHHHHHHHHHHHSC
T ss_pred EEcCCCEEEEEECCHHHHHHHHHHHcCCC
Confidence 34567899999999999999999988753
No 367
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.21 E-value=0.0002 Score=42.27 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=22.6
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHH
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAA 116 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~ 116 (128)
++++++|+||+|.+.++|++|+..
T Consensus 53 ~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 53 TGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp SCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CCCccceEEEEECCHHHHHHHHHc
Confidence 588999999999999999999996
No 368
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.20 E-value=0.00039 Score=42.95 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=25.3
Q ss_pred ccE-EEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 97 HGF-GFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 97 ~~~-~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
.|| |||+|.+.++|++|+..|||..+..
T Consensus 61 ~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 61 NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 385 9999999999999999999998754
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.19 E-value=0.00026 Score=50.98 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhcCcc---cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 77 TVEEAEKVVEMFNRYE---TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 77 ~~~~a~~a~~~l~~~~---~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
++++-..+....-... ....|+||||+|.+.++|++|+..|||..+.
T Consensus 33 te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 33 SRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 5556555555432222 3447899999999999999999999998773
No 370
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.00024 Score=42.41 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=24.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCccC
Q 040490 98 GFGFFTMSDESKLNDAIAALDGQARIL 124 (128)
Q Consensus 98 ~~~fv~f~~~~~a~~a~~~~~g~~~~~ 124 (128)
+|+||+|.+.++|++||..|||..+..
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 899999999999999999999976654
No 371
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.16 E-value=0.0004 Score=41.64 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcC
Q 040490 95 CSHGFGFFTMSDESKLNDAIAALDG 119 (128)
Q Consensus 95 ~~~~~~fv~f~~~~~a~~a~~~~~g 119 (128)
+.++||||+|.+.++|++|+..|++
T Consensus 50 ~~kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 50 KGKNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcc
Confidence 3489999999999999999998865
No 372
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.00014 Score=43.93 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=25.8
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQARI 123 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~~ 123 (128)
++++++|+||+|.+.++|++|+.. ++..+.
T Consensus 65 ~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~ 94 (116)
T 1x4b_A 65 SKRSRGFGFVTFSSMAEVDAAMAA-RPHSID 94 (116)
T ss_dssp TSSCCSEEEEECSSHHHHHHHHTS-CSEEET
T ss_pred CCCcCceEEEEeCCHHHHHHHHHh-CCcEEC
Confidence 588999999999999999999987 665443
No 373
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.13 E-value=0.0006 Score=46.76 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=27.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALDGQAR 122 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~g~~~ 122 (128)
.-+.++|+||+|.+.++|+.|+.+|+|..+
T Consensus 175 v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 175 YVESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp EEGGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EECCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 345799999999999999999999999988
No 374
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.08 E-value=0.00037 Score=41.73 Aligned_cols=25 Identities=36% Similarity=0.613 Sum_probs=23.1
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHh
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~ 117 (128)
+++++|||||+|.+.++|++|+..+
T Consensus 63 tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 63 TKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp TCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHC
Confidence 5889999999999999999999865
No 375
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.06 E-value=6.8e-05 Score=44.23 Aligned_cols=30 Identities=23% Similarity=0.620 Sum_probs=26.0
Q ss_pred cCCcccEEEEEeCCHHHHHHHHH---HhcCCCc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIA---ALDGQAR 122 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~---~~~g~~~ 122 (128)
++++++||||+|.+.++|++|+. .++|+.+
T Consensus 46 ~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l 78 (102)
T 2xs2_A 46 TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKL 78 (102)
T ss_dssp TSCEEEEEEEEESSCCCHHHHTTCCCEETTEEC
T ss_pred CCCccceEEEEECCHHHHHHHHhCCCeECCEEE
Confidence 67899999999999999999999 6666544
No 376
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.00035 Score=41.52 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=22.0
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcC
Q 040490 95 CSHGFGFFTMSDESKLNDAIAALDG 119 (128)
Q Consensus 95 ~~~~~~fv~f~~~~~a~~a~~~~~g 119 (128)
+.++||||+|.+.++|++|+..|++
T Consensus 49 ~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 49 KGKNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHhcc
Confidence 3489999999999999999998754
No 377
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.00083 Score=41.14 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcC
Q 040490 95 CSHGFGFFTMSDESKLNDAIAALDG 119 (128)
Q Consensus 95 ~~~~~~fv~f~~~~~a~~a~~~~~g 119 (128)
+.++||||+|.+.++|++|+..+++
T Consensus 65 ~~kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 65 KGKNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp GGGTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHhcc
Confidence 4589999999999999999998874
No 378
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.002 Score=37.27 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=26.6
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 040490 95 CSHGFGFFTMSDESKLNDAIAALDGQARILPH 126 (128)
Q Consensus 95 ~~~~~~fv~f~~~~~a~~a~~~~~g~~~~~~~ 126 (128)
+..+.+||+|.+.++|++|+..|||..+..+.
T Consensus 52 ~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 52 SETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34445999999999999999999998876554
No 379
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.0012 Score=38.21 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=23.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 99 FGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 99 ~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
|+||+|.+.++|++|+. |||..+...
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~ 72 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGH 72 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTE
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCE
Confidence 99999999999999999 999876543
No 380
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.00054 Score=42.73 Aligned_cols=33 Identities=6% Similarity=-0.096 Sum_probs=25.0
Q ss_pred cCCcccEEEEEeCC----HHH----HHHHHH--HhcCCCccCC
Q 040490 93 TGCSHGFGFFTMSD----ESK----LNDAIA--ALDGQARILP 125 (128)
Q Consensus 93 ~~~~~~~~fv~f~~----~~~----a~~a~~--~~~g~~~~~~ 125 (128)
+|+++||+||+|.+ +++ |.+|+. .+||..+..+
T Consensus 44 Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr 86 (136)
T 2j8a_A 44 SALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGF 86 (136)
T ss_dssp TCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTE
T ss_pred CCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCc
Confidence 89999999999996 433 788888 6788766544
No 381
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.52 E-value=0.01 Score=34.87 Aligned_cols=81 Identities=7% Similarity=0.047 Sum_probs=53.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhcCcc--cCCc-ccE
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDR--STGFGFVTMSTVEEAEKVVEMFNRYE--TGCS-HGF 99 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~--~~~~-~~~ 99 (128)
..-+|-|..||+.+|++++.+.+..+-++....+.....+.+ .-.-|||.|.+.++.....+.+++.. +.+. ..-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 345788999999999999888877654432222222222221 12358999999999999999888876 2222 234
Q ss_pred EEEEeC
Q 040490 100 GFFTMS 105 (128)
Q Consensus 100 ~fv~f~ 105 (128)
+.|+|.
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 556654
No 382
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.18 E-value=0.0039 Score=41.10 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=23.4
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhc
Q 040490 93 TGCSHGFGFFTMSDESKLNDAIAALD 118 (128)
Q Consensus 93 ~~~~~~~~fv~f~~~~~a~~a~~~~~ 118 (128)
.++++||+||+|.+.++|++|+..++
T Consensus 146 ~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 146 HKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred CCCcccEEEEEECCHHHHHHHHHhCC
Confidence 57899999999999999999998654
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.84 E-value=0.022 Score=33.93 Aligned_cols=72 Identities=15% Similarity=0.030 Sum_probs=54.5
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCccc
Q 040490 25 EDAKLFVGNLRYDV-DS----EKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRYE-TGCSHG 98 (128)
Q Consensus 25 ~~~~l~v~nL~~~~-~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~ 98 (128)
-..+|++.||+.++ .. +.++++|..|+++....++.+- | -.-|.|.+.++|.+|...||+.. .|+...
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35679999998864 22 5778999999998887777653 1 37899999999999999999987 455444
Q ss_pred EEEE
Q 040490 99 FGFF 102 (128)
Q Consensus 99 ~~fv 102 (128)
+=|.
T Consensus 78 ~YFg 81 (104)
T 1wey_A 78 LYFA 81 (104)
T ss_dssp EECC
T ss_pred EEec
Confidence 4333
No 384
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.70 E-value=0.0078 Score=44.98 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=40.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 040490 26 DAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86 (128)
Q Consensus 26 ~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 86 (128)
.+.|+|. .|...++.+|.+.|.+||+|.++.+-.+. .-|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4889996 79999999999999999999998765442 2599999999988886653
No 385
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.19 E-value=0.0069 Score=35.23 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.0
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 98 GFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 98 ~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
+.+||+|.+.+.|.+|++ |||..+..+
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 338999999999999998 999876543
No 386
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=95.17 E-value=0.019 Score=32.79 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.5
Q ss_pred CCcccEEEEEeCCHHHHHH
Q 040490 94 GCSHGFGFFTMSDESKLND 112 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~ 112 (128)
.+++|||||+|.+.++|++
T Consensus 45 ~~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 45 KPFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp SSCCSEEEEEESCHHHHHH
T ss_pred eCCCCEEEEEECCHHHHHH
Confidence 3579999999999999884
No 387
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.84 E-value=0.0099 Score=34.80 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=22.8
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 99 FGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 99 ~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
-+||+|.+.+.|.+||+ |||..+..+
T Consensus 60 ~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 60 QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 39999999999999998 999876544
No 388
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.92 E-value=0.37 Score=36.42 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVEMFNRY 91 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 91 (128)
....++|+ +|..+...+|.+.|..||. .+|.++-+. .+||.|.+.+.|..+++.+...
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHTTC
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHHhC
Confidence 34566665 9999999999999999995 355555442 6999999999999999987543
No 389
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.28 E-value=0.025 Score=31.96 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.1
Q ss_pred CCcccEEEEEeCCHHHHHHH
Q 040490 94 GCSHGFGFFTMSDESKLNDA 113 (128)
Q Consensus 94 ~~~~~~~fv~f~~~~~a~~a 113 (128)
..+++|+||+|.+.++|+++
T Consensus 39 ~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 39 KPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SSCCSCCEEECSCHHHHHHT
T ss_pred cCCCCEEEEEECCHHHHHHH
Confidence 34789999999999999754
No 390
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.80 E-value=0.24 Score=30.63 Aligned_cols=77 Identities=9% Similarity=0.083 Sum_probs=45.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec---------CCCC-----CcceEEEEEeCCHHHHHHHHHHhcC
Q 040490 25 EDAKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY---------RETD-----RSTGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 25 ~~~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~---------~~~~-----~~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
....|.|-+.|++.. ..+.+.|+++|.|.+-.-... +.+. ....+..|.|.+..+|.+||. -++
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 345567778866554 566788999998866211100 0001 124578999999999999998 555
Q ss_pred cccCCcccEEEEEe
Q 040490 91 YETGCSHGFGFFTM 104 (128)
Q Consensus 91 ~~~~~~~~~~fv~f 104 (128)
...+.. -.+.+-+
T Consensus 84 ~ii~G~-mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGV-LLGVIPY 96 (132)
T ss_dssp CEETTE-ECEEEEC
T ss_pred eEeCcE-EEEEEEC
Confidence 553333 3333444
No 391
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.41 E-value=1.1 Score=27.29 Aligned_cols=28 Identities=4% Similarity=-0.029 Sum_probs=22.0
Q ss_pred CcccEEEEEeCC-HHHHHHHHHHhcCCCc
Q 040490 95 CSHGFGFFTMSD-ESKLNDAIAALDGQAR 122 (128)
Q Consensus 95 ~~~~~~fv~f~~-~~~a~~a~~~~~g~~~ 122 (128)
+....|||.|.+ .++|.+|+..+|...+
T Consensus 53 ~g~~tgfVrf~~~~~~A~~av~~ln~~~~ 81 (121)
T 1owx_A 53 RGAKEGIILFKEKAKEALGKAKDANNGNL 81 (121)
T ss_dssp TTCSEEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred cCCCEEEEEECCChHHHHHHHHHhhcCCc
Confidence 344469999999 8999999999964433
No 392
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=69.59 E-value=2.7 Score=25.23 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=24.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 040490 97 HGFGFFTMSDESKLNDAIAALDGQARILP 125 (128)
Q Consensus 97 ~~~~fv~f~~~~~a~~a~~~~~g~~~~~~ 125 (128)
.+-+.|.|.+...|-+|.-+|+|..+..+
T Consensus 62 H~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 62 FNGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred CCceEEEEccchhhHHHHhhcCCeeecCe
Confidence 45689999999999999999999876543
No 393
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.72 E-value=51 Score=21.17 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=37.6
Q ss_pred CCeEEEcCCCC-C--------CCHHHHHHHh--hccCCeeEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHH
Q 040490 26 DAKLFVGNLRY-D--------VDSEKLAHLF--NQAGVVEISEVIFYRETDRSTGFGFVTMST-VEEAEKVVE 86 (128)
Q Consensus 26 ~~~l~v~nL~~-~--------~~~~~l~~~f--~~~G~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~ 86 (128)
++++.|-|+|. . .+...|++.| ..|.++.. +.+..+ ..++|++.|.|.+ -.-...|+.
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv-~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRV-RPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEE-EEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCcee-EecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 35666778886 2 3347888866 88987654 334433 3578999999985 344444444
No 394
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=38.71 E-value=32 Score=23.51 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=26.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~ 61 (128)
.-+.|+|||+.++..-+..++.. ..+....+|..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 45679999999999999999887 66655555443
No 395
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=34.39 E-value=14 Score=25.47 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=26.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~ 61 (128)
....|+|||+.++..-|..++.....+....+|..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 35679999999999999999886555666655554
No 396
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=31.75 E-value=34 Score=19.99 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=22.5
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhcCcc
Q 040490 66 RSTGFGFVTMSTVEEAEKVVEMFNRYE 92 (128)
Q Consensus 66 ~~~g~afv~f~~~~~a~~a~~~l~~~~ 92 (128)
.-+||-||+=.+..+...|++.+.+..
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 359999999999999999988765543
No 397
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=28.43 E-value=61 Score=21.73 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=23.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEe
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIF 60 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~ 60 (128)
.+.|+|+|+.++..-+..++.....+....+|.
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~ 124 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFML 124 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEEE
Confidence 577899999999988888877544444444443
No 398
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=26.34 E-value=53 Score=18.43 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=19.7
Q ss_pred cceEEEEEeCCHHHHHHHHHHhcC
Q 040490 67 STGFGFVTMSTVEEAEKVVEMFNR 90 (128)
Q Consensus 67 ~~g~afv~f~~~~~a~~a~~~l~~ 90 (128)
..||.||.+...++...+++...+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cCCEEEEEEecchhHHHHHHCCCC
Confidence 789999999998888888775544
No 399
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=26.04 E-value=20 Score=24.24 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=25.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec
Q 040490 29 LFVGNLRYDVDSEKLAHLFNQAGVVEISEVIFY 61 (128)
Q Consensus 29 l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~~ 61 (128)
..|+|+|+.++..-|..++.....+....+|..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 368999999999999999987666656555544
No 400
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=25.91 E-value=37 Score=19.62 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHhhc-cCCeeEEEEEecC----CCCCcceEEEEEeCCHHHHH
Q 040490 36 YDVDSEKLAHLFNQ-AGVVEISEVIFYR----ETDRSTGFGFVTMSTVEEAE 82 (128)
Q Consensus 36 ~~~~~~~l~~~f~~-~G~i~~~~~~~~~----~~~~~~g~afv~f~~~~~a~ 82 (128)
...+..+|++.+.+ |+.-.++.++..- ..++++|||.| |.+.+.+.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 35677788776664 4432233233322 23456777755 55555544
No 401
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.42 E-value=1e+02 Score=17.27 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=38.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQ-AG-VVEISEVIFYRETDRSTGFGFVTMSTVEEAEKVVE 86 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 86 (128)
..|+-..+...+..++++.+++ |+ .+..+..+..+ .+. --|+|......+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHHH
Confidence 3556677889999999999987 55 55666655543 122 248999987766655443
No 402
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=24.41 E-value=66 Score=21.47 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=24.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEe
Q 040490 27 AKLFVGNLRYDVDSEKLAHLFNQAGVVEISEVIF 60 (128)
Q Consensus 27 ~~l~v~nL~~~~~~~~l~~~f~~~G~i~~~~~~~ 60 (128)
..+.|+|+|+.++..-+..++.....+....+|.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 3477899999999998888887654444444444
No 403
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=24.06 E-value=1.1e+02 Score=17.57 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=36.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCcc--------------------cCCcccEEEEEeCCHHHHHHHHHHh
Q 040490 68 TGFGFVTMSTVEEAEKVVEMFNRYE--------------------TGCSHGFGFFTMSDESKLNDAIAAL 117 (128)
Q Consensus 68 ~g~afv~f~~~~~a~~a~~~l~~~~--------------------~~~~~~~~fv~f~~~~~a~~a~~~~ 117 (128)
.....+...+.++|++|++.....- .-+.|||-.-+..++++-.+.+..|
T Consensus 51 ativvvvvddkewaekairfvkslgaqvliiiydqdqnrleefsrevrrrgfevrtvtspddfkkslerl 120 (134)
T 2l69_A 51 ATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKKSLERL 120 (134)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHH
T ss_pred CeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCchhHHHHHHHHHHhcCceEEEecChHHHHHHHHHH
Confidence 3356677788999999998554332 3456778777888888888777654
No 404
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=23.55 E-value=1.2e+02 Score=17.60 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhhc-cC---CeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHH
Q 040490 36 YDVDSEKLAHLFNQ-AG---VVEIS-EVIFYRETDRSTGFGFVTMSTVEEAEKV 84 (128)
Q Consensus 36 ~~~~~~~l~~~f~~-~G---~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a 84 (128)
...+..+|++.+.+ |+ ....+ .+...-..++++|||.| |.+.+.+...
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56777888877765 44 22223 22233345677888865 7777766543
No 405
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=23.33 E-value=1.2e+02 Score=17.63 Aligned_cols=46 Identities=4% Similarity=-0.031 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHhhc-cCC---eeEE-EEEecCCCCCcceEEEEEeCCHHHHH
Q 040490 36 YDVDSEKLAHLFNQ-AGV---VEIS-EVIFYRETDRSTGFGFVTMSTVEEAE 82 (128)
Q Consensus 36 ~~~~~~~l~~~f~~-~G~---i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~ 82 (128)
...+..+|++.+.+ |+. ...+ .+...-..++++|||.| |.+.+.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~ak 78 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMA 78 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 56777888877765 442 2222 23333345677888865 77777664
No 406
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=23.10 E-value=63 Score=16.08 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=11.2
Q ss_pred eCCHHHHHHHHHHhcC
Q 040490 104 MSDESKLNDAIAALDG 119 (128)
Q Consensus 104 f~~~~~a~~a~~~~~g 119 (128)
|.+++.+..||...+|
T Consensus 23 F~~~~~~~~AL~~t~g 38 (53)
T 2knz_A 23 FINREANLQALIATGG 38 (53)
T ss_dssp CCCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCC
Confidence 5567777777777666
No 407
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=22.18 E-value=71 Score=15.42 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=10.7
Q ss_pred eCCHHHHHHHHHHhcC
Q 040490 104 MSDESKLNDAIAALDG 119 (128)
Q Consensus 104 f~~~~~a~~a~~~~~g 119 (128)
|.+++.+..||...+|
T Consensus 19 F~d~~~~~~AL~~~~g 34 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGG 34 (46)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCC
Confidence 4566666777777666
No 408
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=22.11 E-value=56 Score=13.47 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=9.1
Q ss_pred HHHHHHHhhccC
Q 040490 40 SEKLAHLFNQAG 51 (128)
Q Consensus 40 ~~~l~~~f~~~G 51 (128)
..+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467788888876
No 409
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=20.99 E-value=75 Score=15.73 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=10.5
Q ss_pred eCCHHHHHHHHHHhcC
Q 040490 104 MSDESKLNDAIAALDG 119 (128)
Q Consensus 104 f~~~~~a~~a~~~~~g 119 (128)
|.+++.+..||...+|
T Consensus 24 F~~~~~~~~AL~~t~g 39 (52)
T 2jy5_A 24 FLNREANLQALIATGG 39 (52)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCC
Confidence 5566667777776665
No 410
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.76 E-value=58 Score=23.29 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=18.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 040490 28 KLFVGNLRYDVDSEKLAHLFNQ 49 (128)
Q Consensus 28 ~l~v~nL~~~~~~~~l~~~f~~ 49 (128)
...|+|||.+++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4678999999998888877764
No 411
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=20.50 E-value=1.4e+02 Score=17.45 Aligned_cols=47 Identities=6% Similarity=0.039 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhhc-cCC---eeEEE-EEecCCCCCcceEEEEEeCCHHHHHH
Q 040490 36 YDVDSEKLAHLFNQ-AGV---VEISE-VIFYRETDRSTGFGFVTMSTVEEAEK 83 (128)
Q Consensus 36 ~~~~~~~l~~~f~~-~G~---i~~~~-~~~~~~~~~~~g~afv~f~~~~~a~~ 83 (128)
...+..+|++.+.+ |+. ...+. +...-..++++|||.| |.+.+.+..
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888877665 443 22222 2222344677888866 777776653
No 412
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=20.49 E-value=26 Score=16.75 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCCccCC
Q 040490 108 SKLNDAIAALDGQARILP 125 (128)
Q Consensus 108 ~~a~~a~~~~~g~~~~~~ 125 (128)
++.++|...|+.+++.+|
T Consensus 25 qD~eAaF~KLDqkDl~~P 42 (42)
T 3k6g_D 25 QDSEAAFAKLDQKDLVLP 42 (42)
T ss_dssp TTHHHHHHHHHHSCCC--
T ss_pred CCcHHHHHhcccccCCCC
Confidence 445666666766666554
Done!