Query 040491
Match_columns 497
No_of_seqs 270 out of 1623
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:59:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0598 CorA Mg2+ and Co2+ tra 100.0 5.2E-46 1.1E-50 381.0 30.6 246 157-440 51-321 (322)
2 PRK09546 zntB zinc transporter 100.0 4.5E-45 9.7E-50 373.8 32.7 243 158-440 55-323 (324)
3 TIGR00383 corA magnesium Mg(2+ 100.0 9.8E-43 2.1E-47 354.0 31.2 246 157-440 46-317 (318)
4 PRK11085 magnesium/nickel/coba 100.0 3.4E-37 7.4E-42 315.1 31.3 246 157-440 44-315 (316)
5 PF01544 CorA: CorA-like Mg2+ 100.0 2.3E-37 5E-42 307.2 28.0 235 157-425 22-284 (292)
6 KOG2662 Magnesium transporters 98.7 4.8E-07 1E-11 94.8 18.1 72 366-439 336-410 (414)
7 PF10267 Tmemb_cc2: Predicted 90.9 9.2 0.0002 41.3 15.9 96 314-417 275-379 (395)
8 PF04156 IncA: IncA protein; 90.5 1.2 2.5E-05 42.5 8.1 63 377-443 5-68 (191)
9 PF11902 DUF3422: Protein of u 90.4 15 0.00032 40.1 17.1 63 371-438 356-418 (420)
10 PF07332 DUF1469: Protein of u 89.7 3.3 7.1E-05 36.5 9.7 58 379-437 40-99 (121)
11 PF10112 Halogen_Hydrol: 5-bro 77.3 11 0.00024 36.3 8.1 27 373-399 2-30 (199)
12 COG3462 Predicted membrane pro 77.0 11 0.00023 33.6 7.0 50 379-431 16-67 (117)
13 PRK09546 zntB zinc transporter 74.2 1.1E+02 0.0024 31.5 16.3 54 370-425 261-316 (324)
14 COG5487 Small integral membran 74.1 8.2 0.00018 29.8 4.8 24 382-407 4-27 (54)
15 PF15050 SCIMP: SCIMP protein 70.5 8.4 0.00018 34.9 4.9 31 409-439 4-37 (133)
16 PF06609 TRI12: Fungal trichot 69.7 6.5 0.00014 44.6 5.0 40 379-421 168-207 (599)
17 PF06305 DUF1049: Protein of u 65.5 14 0.0003 29.2 4.8 21 411-431 18-38 (68)
18 TIGR03647 Na_symport_sm probab 65.2 23 0.0005 29.6 6.2 25 403-428 35-59 (77)
19 KOG3850 Predicted membrane pro 64.9 2.1E+02 0.0046 31.0 16.9 43 314-356 323-365 (455)
20 PF13994 PgaD: PgaD-like prote 64.0 19 0.00041 32.9 6.1 85 385-473 31-123 (138)
21 COG0598 CorA Mg2+ and Co2+ tra 63.8 1.9E+02 0.0041 30.0 17.3 123 268-410 138-290 (322)
22 PF10883 DUF2681: Protein of u 61.3 15 0.00032 31.5 4.4 55 420-474 8-62 (87)
23 COG4327 Predicted membrane pro 60.6 11 0.00024 32.7 3.5 32 387-419 29-60 (101)
24 PF04011 LemA: LemA family; I 58.6 1.7E+02 0.0037 27.8 12.7 55 338-407 119-173 (186)
25 PRK13682 hypothetical protein; 57.1 10 0.00022 29.4 2.5 24 382-407 4-27 (51)
26 PRK15348 type III secretion sy 56.9 9.8 0.00021 38.6 3.1 65 374-438 179-248 (249)
27 PF05478 Prominin: Prominin; 56.7 4E+02 0.0086 31.5 17.9 32 375-406 419-450 (806)
28 PF03904 DUF334: Domain of unk 55.6 2.3E+02 0.005 28.5 14.6 35 370-404 145-181 (230)
29 PF13937 DUF4212: Domain of un 55.2 53 0.0011 27.8 6.7 24 404-428 40-63 (81)
30 COG4949 Uncharacterized membra 54.6 2.6E+02 0.0056 29.6 12.8 64 371-440 356-419 (424)
31 PF05478 Prominin: Prominin; 53.5 3.6E+02 0.0078 31.8 15.6 31 403-435 403-433 (806)
32 PF13273 DUF4064: Protein of u 52.4 22 0.00048 30.4 4.2 25 377-401 6-30 (100)
33 PF01277 Oleosin: Oleosin; In 51.8 74 0.0016 28.8 7.5 39 423-461 70-108 (118)
34 COG4726 PilX Tfp pilus assembl 51.5 28 0.00061 34.0 5.1 43 403-446 6-49 (196)
35 PF14316 DUF4381: Domain of un 50.9 41 0.00089 30.8 6.0 30 410-439 20-49 (146)
36 PF06127 DUF962: Protein of un 49.5 1.3E+02 0.0027 25.9 8.4 58 369-443 16-73 (95)
37 PF12263 DUF3611: Protein of u 49.4 75 0.0016 30.8 7.7 57 378-439 27-84 (183)
38 TIGR00383 corA magnesium Mg(2+ 47.6 2.1E+02 0.0046 29.1 11.3 49 371-421 256-306 (318)
39 PF05817 Ribophorin_II: Oligos 47.3 40 0.00087 38.7 6.4 26 396-422 571-596 (636)
40 PF05992 SbmA_BacA: SbmA/BacA- 46.9 1.8E+02 0.0038 30.7 10.4 52 397-452 148-199 (315)
41 COG1422 Predicted membrane pro 46.5 74 0.0016 31.3 7.1 46 390-439 24-70 (201)
42 COG3462 Predicted membrane pro 46.3 95 0.0021 27.8 7.1 67 370-437 3-70 (117)
43 TIGR03185 DNA_S_dndD DNA sulfu 45.7 3E+02 0.0065 31.5 13.1 24 282-305 399-422 (650)
44 PF14163 SieB: Superinfection 45.6 55 0.0012 30.1 6.0 40 379-425 7-46 (151)
45 PF14015 DUF4231: Protein of u 45.5 31 0.00068 29.6 4.1 12 378-389 20-31 (112)
46 PRK11085 magnesium/nickel/coba 43.8 4E+02 0.0088 27.9 17.6 133 268-411 130-285 (316)
47 PF05425 CopD: Copper resistan 42.9 72 0.0016 27.4 6.0 52 375-429 3-56 (105)
48 KOG1691 emp24/gp25L/p24 family 42.4 89 0.0019 31.0 7.0 18 368-385 170-187 (210)
49 KOG1277 Endosomal membrane pro 40.8 68 0.0015 35.5 6.5 27 375-401 399-425 (593)
50 PRK10881 putative hydrogenase 40.7 96 0.0021 33.2 7.7 56 375-437 21-81 (394)
51 TIGR01598 holin_phiLC3 holin, 40.6 11 0.00025 31.6 0.5 25 377-401 12-36 (78)
52 PRK09731 putative general secr 40.2 77 0.0017 30.6 6.2 35 409-443 24-62 (178)
53 KOG3684 Ca2+-activated K+ chan 39.9 76 0.0016 35.0 6.7 55 384-457 292-346 (489)
54 PF11712 Vma12: Endoplasmic re 39.9 3E+02 0.0064 25.2 10.4 30 390-423 92-121 (142)
55 PF09972 DUF2207: Predicted me 39.1 1.8E+02 0.0039 31.1 9.6 23 379-401 400-422 (511)
56 PF01102 Glycophorin_A: Glycop 38.2 42 0.00092 30.5 3.8 17 412-428 66-82 (122)
57 PF06809 NPDC1: Neural prolife 37.8 1.1E+02 0.0024 32.2 7.3 95 400-495 188-303 (341)
58 PF01544 CorA: CorA-like Mg2+ 37.7 4E+02 0.0088 26.1 13.2 87 350-439 205-292 (292)
59 COG3771 Predicted membrane pro 37.6 1.3E+02 0.0028 26.1 6.3 30 410-439 38-69 (97)
60 PF02009 Rifin_STEVOR: Rifin/s 36.7 41 0.00088 35.1 4.0 22 425-453 272-293 (299)
61 PF07787 DUF1625: Protein of u 36.3 1.5E+02 0.0032 29.6 7.9 59 379-438 188-247 (248)
62 TIGR03142 cytochro_ccmI cytoch 36.2 1.1E+02 0.0025 27.0 6.3 49 413-461 2-53 (117)
63 PF11026 DUF2721: Protein of u 35.6 3.4E+02 0.0073 24.6 12.9 19 283-301 23-41 (130)
64 PF15086 UPF0542: Uncharacteri 35.6 82 0.0018 26.2 4.7 29 409-439 18-46 (74)
65 TIGR01478 STEVOR variant surfa 35.3 48 0.001 34.3 4.1 32 409-440 259-290 (295)
66 PF04129 Vps52: Vps52 / Sac2 f 35.2 2.6E+02 0.0057 31.1 10.3 84 316-401 15-98 (508)
67 PRK11677 hypothetical protein; 34.9 76 0.0017 29.3 5.0 17 458-474 72-88 (134)
68 PF08496 Peptidase_S49_N: Pept 34.8 68 0.0015 30.3 4.8 42 410-451 6-47 (155)
69 PF13829 DUF4191: Domain of un 34.6 2.2E+02 0.0049 28.5 8.6 60 410-485 51-110 (224)
70 PTZ00370 STEVOR; Provisional 34.4 49 0.0011 34.3 4.0 25 409-433 255-279 (296)
71 PF03176 MMPL: MMPL family; I 34.0 48 0.001 34.0 4.1 43 380-424 247-289 (333)
72 PRK08990 flagellar motor prote 34.0 60 0.0013 32.9 4.6 45 378-425 3-47 (254)
73 PF13903 Claudin_2: PMP-22/EMP 34.0 59 0.0013 29.3 4.2 55 373-435 68-122 (172)
74 PF09788 Tmemb_55A: Transmembr 33.9 29 0.00062 35.3 2.3 54 379-438 201-254 (256)
75 TIGR02976 phageshock_pspB phag 33.4 1.8E+02 0.0038 24.3 6.5 56 413-470 5-61 (75)
76 PRK10714 undecaprenyl phosphat 33.3 1.3E+02 0.0027 31.3 7.0 24 373-396 228-251 (325)
77 PRK13454 F0F1 ATP synthase sub 32.3 1E+02 0.0022 29.5 5.7 7 401-407 20-26 (181)
78 PF06210 DUF1003: Protein of u 31.7 3.6E+02 0.0078 23.9 8.6 42 382-423 4-45 (108)
79 COG5130 YIP3 Prenylated rab ac 31.6 2.4E+02 0.0052 26.6 7.6 15 385-399 84-98 (169)
80 COG3114 CcmD Heme exporter pro 31.4 2.6E+02 0.0057 22.8 6.8 46 410-468 14-60 (67)
81 PRK00247 putative inner membra 30.8 7.6E+02 0.016 27.2 12.9 23 375-397 222-245 (429)
82 PF11990 DUF3487: Protein of u 29.9 1.8E+02 0.0039 26.3 6.5 37 415-451 53-89 (121)
83 PF02687 FtsX: FtsX-like perme 29.7 1.6E+02 0.0035 24.4 6.0 31 409-439 90-120 (121)
84 PF06196 DUF997: Protein of un 29.6 3.4E+02 0.0074 22.8 8.4 53 380-434 10-67 (80)
85 PRK13455 F0F1 ATP synthase sub 29.3 1.8E+02 0.004 27.6 6.9 26 376-407 1-26 (184)
86 PF07331 TctB: Tripartite tric 29.2 3.1E+02 0.0066 24.3 8.0 45 381-425 5-49 (141)
87 PF10805 DUF2730: Protein of u 29.0 3.9E+02 0.0085 23.3 8.5 23 283-305 44-66 (106)
88 KOG2447 Oligosaccharyltransfer 28.8 1.3E+02 0.0028 31.2 5.9 41 383-423 205-248 (287)
89 PF10292 7TM_GPCR_Srab: Serpen 28.8 3E+02 0.0065 28.4 8.9 34 368-401 227-260 (324)
90 PRK11380 hypothetical protein; 28.7 3.4E+02 0.0074 29.0 9.1 15 427-441 84-98 (353)
91 COG5416 Uncharacterized integr 28.5 1.8E+02 0.0038 25.6 5.8 28 398-426 43-72 (98)
92 PRK10555 aminoglycoside/multid 28.4 3E+02 0.0065 33.5 9.9 44 384-435 451-494 (1037)
93 PF11821 DUF3341: Protein of u 28.4 1.9E+02 0.0041 27.8 6.7 53 382-435 64-117 (173)
94 PF06667 PspB: Phage shock pro 28.1 3.4E+02 0.0074 22.6 7.3 28 412-439 4-31 (75)
95 PRK03001 M48 family peptidase; 28.1 2.7E+02 0.0059 28.3 8.3 33 413-445 30-65 (283)
96 PF04238 DUF420: Protein of un 28.0 3.5E+02 0.0076 24.8 8.1 65 374-439 36-102 (133)
97 PRK06041 flagellar assembly pr 27.9 9.2E+02 0.02 27.3 15.2 18 346-363 179-196 (553)
98 KOG0859 Synaptobrevin/VAMP-lik 27.7 6.2E+02 0.013 25.2 10.2 36 220-255 55-90 (217)
99 PRK10747 putative protoheme IX 27.5 2.1E+02 0.0046 30.3 7.7 23 438-460 73-96 (398)
100 PF03268 DUF267: Caenorhabditi 27.1 4.2E+02 0.0091 28.4 9.5 56 370-430 222-278 (353)
101 PRK14584 hmsS hemin storage sy 26.7 2.1E+02 0.0045 27.2 6.4 92 377-473 19-121 (153)
102 PF09451 ATG27: Autophagy-rela 26.7 55 0.0012 33.2 2.9 31 409-439 198-228 (268)
103 PF13779 DUF4175: Domain of un 26.3 76 0.0016 37.6 4.3 13 439-452 57-69 (820)
104 PF08580 KAR9: Yeast cortical 26.2 1E+03 0.022 27.8 13.2 19 313-331 254-272 (683)
105 PF06716 DUF1201: Protein of u 25.9 1.2E+02 0.0027 23.1 3.9 35 410-444 10-45 (54)
106 PRK15033 tricarballylate utili 25.4 1.7E+02 0.0036 31.8 6.3 53 370-431 231-288 (389)
107 PF12273 RCR: Chitin synthesis 25.4 76 0.0016 28.5 3.3 25 414-439 2-26 (130)
108 PRK14622 hypothetical protein; 24.9 1.8E+02 0.0039 25.5 5.4 31 344-374 61-91 (103)
109 PF02404 SCF: Stem cell factor 24.5 25 0.00054 35.9 0.0 41 428-470 230-273 (273)
110 PF11368 DUF3169: Protein of u 24.5 4.5E+02 0.0098 26.1 9.0 18 454-472 174-191 (248)
111 TIGR00353 nrfE c-type cytochro 24.3 1.6E+02 0.0034 33.6 6.2 22 379-400 219-240 (576)
112 PF10027 DUF2269: Predicted in 24.2 2.6E+02 0.0056 25.5 6.7 24 382-405 51-74 (150)
113 PRK10697 DNA-binding transcrip 24.0 3E+02 0.0064 25.0 6.7 46 427-472 53-102 (118)
114 KOG1278 Endosomal membrane pro 23.7 2.3E+02 0.005 32.3 7.1 26 376-401 436-461 (628)
115 KOG1608 Protein transporter of 23.5 2.4E+02 0.0053 29.6 6.8 18 381-398 262-279 (374)
116 cd03496 SQR_TypeC_CybS SQR cat 23.3 3.5E+02 0.0076 23.7 7.0 51 387-439 39-92 (104)
117 KOG1278 Endosomal membrane pro 23.3 73 0.0016 36.0 3.2 73 377-451 396-472 (628)
118 PF04531 Phage_holin_1: Bacter 22.8 70 0.0015 27.0 2.4 30 372-401 8-37 (84)
119 PF06570 DUF1129: Protein of u 22.7 3.1E+02 0.0066 26.6 7.2 10 410-419 110-119 (206)
120 PF03929 PepSY_TM: PepSY-assoc 22.5 1.3E+02 0.0027 20.3 3.1 19 378-396 7-25 (27)
121 TIGR02978 phageshock_pspC phag 22.5 3.5E+02 0.0076 24.5 6.9 27 446-472 79-105 (121)
122 PF11700 ATG22: Vacuole efflux 22.2 5.1E+02 0.011 28.5 9.6 65 365-431 337-401 (477)
123 PF11137 DUF2909: Protein of u 22.2 4.3E+02 0.0092 21.4 6.8 42 376-420 1-42 (63)
124 TIGR03145 cyt_nit_nrfE cytochr 21.8 2.4E+02 0.0052 32.5 7.0 71 379-451 271-349 (628)
125 PTZ00046 rifin; Provisional 21.7 1.1E+02 0.0024 32.8 4.0 31 409-439 315-345 (358)
126 PF02060 ISK_Channel: Slow vol 21.5 71 0.0015 29.3 2.3 55 389-443 14-74 (129)
127 PHA02414 hypothetical protein 21.5 5.7E+02 0.012 22.6 11.1 49 282-332 5-53 (111)
128 PF12877 DUF3827: Domain of un 21.4 32 0.00069 39.3 0.1 50 409-466 265-315 (684)
129 PRK11380 hypothetical protein; 21.4 3.2E+02 0.0069 29.3 7.3 28 432-462 102-131 (353)
130 PF11377 DUF3180: Protein of u 21.1 1.7E+02 0.0037 26.9 4.7 47 381-433 3-50 (138)
131 TIGR01477 RIFIN variant surfac 21.1 1.1E+02 0.0023 32.8 3.8 31 409-439 310-340 (353)
132 PF11241 DUF3043: Protein of u 20.9 80 0.0017 30.3 2.6 26 414-439 103-128 (170)
133 PF00822 PMP22_Claudin: PMP-22 20.7 59 0.0013 29.5 1.7 29 373-401 70-98 (166)
134 PF06679 DUF1180: Protein of u 20.4 1.4E+02 0.003 28.5 4.1 26 414-439 96-121 (163)
135 PF11044 TMEMspv1-c74-12: Plec 20.4 1.8E+02 0.0038 22.1 3.7 13 427-439 18-30 (49)
136 PRK15127 multidrug efflux syst 20.2 4.5E+02 0.0097 32.1 9.3 40 384-431 451-490 (1049)
No 1
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-46 Score=381.04 Aligned_cols=246 Identities=21% Similarity=0.262 Sum_probs=214.0
Q ss_pred eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEEEEEEEeCCEEEEEEecCCC
Q 040491 157 NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKGS 236 (497)
Q Consensus 157 ~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~L~ifl~~n~LITv~~~~g~ 236 (497)
+.+|||+.+.|++.+. +||||+ +.++|++|++++++.. +.+.+..+ +.+++|++++++|||+|+.
T Consensus 51 ~~~~l~~~~~ed~~~~------~~r~r~----e~~d~~~~i~~~~~~~-~~~~~~~~-~~~v~~i~~~~~liT~r~~--- 115 (322)
T COG0598 51 KTFGLHPLALEDLLDA------EQRPKV----ERYDDYLFIVLRDVNL-EEEEDKAE-TEPVSIIVGKRRLITIRHR--- 115 (322)
T ss_pred HhcCCCcchHHHHhCc------ccCCce----EeeCCEEEEEEEeecc-cccccccc-ceeEEEEEeCCEEEEEecC---
Confidence 7799999999998876 679999 9999999999999976 33222224 5999999999999999996
Q ss_pred CCCCcchhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHH
Q 040491 237 TSNINVLGIMEVQELLAAGGSNIPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQE 316 (497)
Q Consensus 237 ~~~~~~~~i~~vrerl~~~~~~~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~~ 316 (497)
+..++..+++++.++. ....++.+++++|+|.++|.+.+ +++++++++++||++++.++.++ .+++
T Consensus 116 ----~~~~~~~vr~r~~~~~-~~~~~~~~l~~~lld~i~d~~~~-~le~i~~~~~~ie~~l~~~~~~~--------~l~~ 181 (322)
T COG0598 116 ----PLPAFDRVRERLEKGT-LLTRGADELLYALLDAIVDNYFP-VLEQIEDELEAIEDQLLASTTNE--------ELER 181 (322)
T ss_pred ----CCccHHHHHHHHhccc-cccCCHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhcCccHH--------HHHH
Confidence 7899999999999863 36789999999999999999666 99999999999999999988763 4578
Q ss_pred HHHHHHHHHHHHHhhcccchh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 317 IRRLSTQVIRVKWSLHARDEI-------------------------STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDR 371 (497)
Q Consensus 317 I~~LRr~li~LRR~l~p~rEi-------------------------~l~rllEdleslre~l~~l~d~~~S~vs~~iN~r 371 (497)
|+.+|+.++.+|+.+.|++++ |+.++.+.++.++++++.++|++.+.++ ++
T Consensus 182 l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is----~~ 257 (322)
T COG0598 182 LGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLIN----NN 257 (322)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 888999999888887775433 6778888899999999999999999987 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 040491 372 SLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKP 440 (497)
Q Consensus 372 mN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~ 440 (497)
||++||+||++|+||+|||||||+|||||++|||++ ||||||+++++|+++++++++ |++.|+|
T Consensus 258 ~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~-~~~Gy~~~l~~m~~~~~~~~~----~frrk~W 321 (322)
T COG0598 258 QNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELD-WPYGYPIALILMLLLALLLYL----YFRRKGW 321 (322)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCC-CcccHHHHHHHHHHHHHHHHH----HHHhcCc
Confidence 999999999999999999999999999999999999 999999999999999876544 3445555
No 2
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=4.5e-45 Score=373.81 Aligned_cols=243 Identities=20% Similarity=0.301 Sum_probs=204.6
Q ss_pred ccCCCh-hHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEEEEEEEeCCEEEEEEecCCC
Q 040491 158 AQWLHP-AISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKGS 236 (497)
Q Consensus 158 ~~~Lhp-li~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~L~ifl~~n~LITv~~~~g~ 236 (497)
..++|| .+.+++.+. ++|||+ |.|++++|++++.+.. +++...++ +.+++||+++|+|||+|++
T Consensus 55 ~~~~~~~~~~d~l~~~------~~rpk~----e~~~~~~~iil~~~~~-~~~~~~~~-~~~l~~~l~~~~lITv~~~--- 119 (324)
T PRK09546 55 TTPLLPDNVRDALAGE------STRPRV----SRLGEGTLITLRCING-NTDERPDQ-LVAMRVYITDRLIVSTRHR--- 119 (324)
T ss_pred hcCCCCHHHHHHHhCC------CCCCcE----EEECCEEEEEEEeccC-CCCCChhh-eEEEEEEEeCCEEEEEecC---
Confidence 345565 566666543 579999 9999999999999876 44333345 5999999999999999987
Q ss_pred CCCCcchhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHH
Q 040491 237 TSNINVLGIMEVQELLAAGGSNIPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQE 316 (497)
Q Consensus 237 ~~~~~~~~i~~vrerl~~~~~~~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~~ 316 (497)
+...++++++++.++. .+.++.++++.|++.++|.+.+ +++.+++++|++|++++.+..+. +++
T Consensus 120 ----~~~~~~~~~~~~~~~~--~~~~~~~ll~~lld~ivd~~~~-~l~~i~~~ld~lE~~l~~~~~~~---------~~~ 183 (324)
T PRK09546 120 ----KVLALDDVVSDLQEGT--GPTDCGGWLVDVCDALTDHASE-FIEELHDKIIDLEDNLLDQQIPP---------RGE 183 (324)
T ss_pred ----CcccHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcc---------HHH
Confidence 7899999999998875 4567889999999999999666 99999999999999998753221 357
Q ss_pred HHHHHHHHHHHHHhhcccchh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 317 IRRLSTQVIRVKWSLHARDEI-------------------------STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDR 371 (497)
Q Consensus 317 I~~LRr~li~LRR~l~p~rEi-------------------------~l~rllEdleslre~l~~l~d~~~S~vs~~iN~r 371 (497)
|+.+|++++++||.+.|++++ |+.++.+++++++++++.++|.|.+.++ ++
T Consensus 184 l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s----~~ 259 (324)
T PRK09546 184 LALLRKQLIVMRRYMAPQRDVFARLASERLPWMSDDDRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMA----EA 259 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 888888888888877666544 6778889999999999999999999887 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 040491 372 SLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKP 440 (497)
Q Consensus 372 mN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~ 440 (497)
||++||+||++|+||+|||||||||||||++|||++ |+||||+++++|++++++++| |++.|+|
T Consensus 260 ~N~~m~~Ltilt~IflPlT~IaGiyGMNf~~mPel~-~~~gy~~~l~im~~i~~~~~~----~fkrk~W 323 (324)
T PRK09546 260 MNRRTYTMSLMAMVFLPTTFLTGLFGVNLGGIPGGG-WPFGFSIFCLLLVVLIGGVAW----WLKRSKW 323 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcC-CcchHHHHHHHHHHHHHHHHH----HHHhccc
Confidence 999999999999999999999999999999999999 999999999999999987665 3444555
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=9.8e-43 Score=354.04 Aligned_cols=246 Identities=15% Similarity=0.144 Sum_probs=203.4
Q ss_pred eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEEEEEEEeCCEEEEEEecCCC
Q 040491 157 NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKGS 236 (497)
Q Consensus 157 ~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~L~ifl~~n~LITv~~~~g~ 236 (497)
+.+++||...+++.+. ++|||+ +.+++++|++++.+.. +.+.. .. +.+++|++++++|||+|+.
T Consensus 46 ~~~~l~~~~~ed~~~~------~~~~k~----e~~~~~~~i~~~~~~~-~~~~~-~~-~~~l~~~l~~~~liTv~~~--- 109 (318)
T TIGR00383 46 QFFAIHPLALEDILNS------PQRPKV----EEDEDHLFIISFFLNE-DEDDT-FE-TEQVSFILGKNLLFTIHER--- 109 (318)
T ss_pred HHcCcCcchHHHhhCC------CCCCcE----EEECCEEEEEEEeeec-cCCCc-ce-eEEEEEEEECCEEEEEEcC---
Confidence 7789999888887765 679999 9999999999998866 32222 23 5899999999999999986
Q ss_pred CCCCcchhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHH
Q 040491 237 TSNINVLGIMEVQELLAAGGSNIPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQE 316 (497)
Q Consensus 237 ~~~~~~~~i~~vrerl~~~~~~~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~~ 316 (497)
+...++.+++++..++.....++.+++++|++.++|.+.+ +++.++++++++|++++.++.++ ..++
T Consensus 110 ----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~il~~ivd~~~~-~l~~l~~~~~~le~~l~~~~~~~--------~l~~ 176 (318)
T TIGR00383 110 ----ELPAFDSIRERIRTSQKVFEKGADYLLYDIFDAIIDSYFP-LLENIEDELEELEDEIISGPTST--------LMDE 176 (318)
T ss_pred ----CCCcHHHHHHHHHhCchhhhCCHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHhcCCCHH--------HHHH
Confidence 6788999999888754222347889999999999999666 99999999999999999876543 3467
Q ss_pred HHHHHHHHHHHHHhhcccchh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 317 IRRLSTQVIRVKWSLHARDEI--------------------------STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQD 370 (497)
Q Consensus 317 I~~LRr~li~LRR~l~p~rEi--------------------------~l~rllEdleslre~l~~l~d~~~S~vs~~iN~ 370 (497)
|+++|++++.+|+.+.|.+++ ++.++.+.++.++++++.++|.+.+.++ +
T Consensus 177 l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s----~ 252 (318)
T TIGR00383 177 ILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVN----N 252 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 778888887777765444322 4667777778888888888888888877 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 040491 371 RSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKP 440 (497)
Q Consensus 371 rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~ 440 (497)
+||++||+||++|+||+|||||||+|||||++||+++ |+|||++++++|++++++++ .|++.|+|
T Consensus 253 ~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~-~~~gy~~~l~~m~~i~~~~~----~~fkrk~W 317 (318)
T TIGR00383 253 KMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELN-WKYGYPAVLIVMAVIALGPL----IYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCcccc-chhHHHHHHHHHHHHHHHHH----HHHHHcCC
Confidence 9999999999999999999999999999999999999 99999999999999987644 34556666
No 4
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=100.00 E-value=3.4e-37 Score=315.12 Aligned_cols=246 Identities=9% Similarity=0.056 Sum_probs=184.3
Q ss_pred eccCCC---hhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEEEEEEEeCCEEEEEEec
Q 040491 157 NAQWLH---PAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHV 233 (497)
Q Consensus 157 ~~~~Lh---pli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~L~ifl~~n~LITv~~~ 233 (497)
..+|+| ++..+++.. .||+ .++++++++....... .++..+. +.+++|++++++|||+|+.
T Consensus 44 ~~~gl~~pt~~~~eeIe~---------ssR~----~~~~~~~~~~~~~~~~-~~~~~~~--~~~v~fil~~~~LvTvr~~ 107 (316)
T PRK11085 44 SELGQSLATRPELEDIEA---------SARF----FEDEDGLHIHSFFFFE-DAEDHAG--NSTVAFTIRDGRLFTLRER 107 (316)
T ss_pred HHhCCCCCChhhHHHHhh---------CceE----EEECCeEEEEEEEEec-CCCCCcc--ceeEEEEEECCEEEEEecC
Confidence 678999 344444332 3899 6788887666655443 2222233 4889999999999999987
Q ss_pred CCCCCCCcchhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHH
Q 040491 234 KGSTSNINVLGIMEVQELLAAGGSNIPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIIL 313 (497)
Q Consensus 234 ~g~~~~~~~~~i~~vrerl~~~~~~~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l 313 (497)
+...+..+++++..++. ...++.++++.|+|.++|++.+ .++.++.++|++|.+++.+......+ .+
T Consensus 108 -------~~~~f~~~~~r~~~~~~-~~~~~~~vl~~Lld~iVd~~ad-~lE~~~~~ld~ls~~if~~~~~~~~~----~~ 174 (316)
T PRK11085 108 -------ELPAFRLYRMRARSQTL-VDGNAYELLLDLFETKIEQLAD-EIENIYSDLEKLSRVIMEGHQGDEYD----EA 174 (316)
T ss_pred -------CcchHHHHHHHHHhCCc-ccCCHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhccCCCchhHH----HH
Confidence 68899999999987752 2458899999999999999555 99999999999999999754322211 23
Q ss_pred HHHHHHHHHHHHHHHHhhcccchh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 314 NQEIRRLSTQVIRVKWSLHARDEI-----------------------STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQD 370 (497)
Q Consensus 314 ~~~I~~LRr~li~LRR~l~p~rEi-----------------------~l~rllEdleslre~l~~l~d~~~S~vs~~iN~ 370 (497)
.++|.++++.+.++|+.+.|.+++ ++.++.+..+.++|+++.++|++.+.++ +
T Consensus 175 l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~----~ 250 (316)
T PRK11085 175 LSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFIN----I 250 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h
Confidence 456666666666665554332211 2334444456667777777777777766 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 040491 371 RSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKP 440 (497)
Q Consensus 371 rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~ 440 (497)
++|++||+||++|+||+|||+|||+|||||++|||++ |+||||+++++|+++++++++ |++.|+|
T Consensus 251 ~~N~~mk~lTv~s~if~pptliagiyGMNf~~mP~~~-~~~g~~~~l~~~~~~~~~~~~----~f~rk~W 315 (316)
T PRK11085 251 EQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELK-WSFGYPGAIILMILAGLAPYL----YFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC-CcHHHHHHHHHHHHHHHHHHH----HHHHccc
Confidence 9999999999999999999999999999999999999 999999999999999876554 3444555
No 5
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=100.00 E-value=2.3e-37 Score=307.25 Aligned_cols=235 Identities=23% Similarity=0.280 Sum_probs=181.9
Q ss_pred eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEEEEEEEeCCEEEEEEecCCC
Q 040491 157 NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKGS 236 (497)
Q Consensus 157 ~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~L~ifl~~n~LITv~~~~g~ 236 (497)
+.++|||...+++.+. .++||+ +.++++.|++++.+.. .+...... ..++++++++++|||+|..
T Consensus 22 ~~~~l~~~~~~~~~~~------~~~~~~----~~~~~~~~~~l~~~~~-~~~~~~~~-~~~l~~~~~~~~lit~~~~--- 86 (292)
T PF01544_consen 22 EEFGLHPLTIEDALDP------EERPRI----EVFDDYLFIVLRAPEY-EEEDDIDE-ESPLSFILGDNFLITVHRD--- 86 (292)
T ss_dssp HTTTS-HHHHHHHCCT------SSSSEE----EEETTEEEEEEEEEEE-STTCCECC-EEEEEEEEETTEEEEEESS---
T ss_pred HHhCcCHhHHHHHhCC------CcCCEE----EEECCeEEEEEEEcch-hhcccccc-cceEEEEEecceEEEEECC---
Confidence 7799999988887775 679999 9999999999999887 33333222 2579999999999999987
Q ss_pred CCCCcchhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHH
Q 040491 237 TSNINVLGIMEVQELLAAGGSNIPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQE 316 (497)
Q Consensus 237 ~~~~~~~~i~~vrerl~~~~~~~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~~ 316 (497)
+...++.+++++.. ......++.++++.+++.+++.+.+ .++.++++++++|+.+.....++. .++
T Consensus 87 ----~~~~~~~~~~~~~~-~~~~~~~~~~ll~~il~~~~~~~~~-~l~~l~~~l~~le~~~~~~~~~~~--------~~~ 152 (292)
T PF01544_consen 87 ----PLPFIDELRERLES-RNERPSSPEDLLYAILDEIVDDYFE-VLEELEDELDELEDELDDRPSNEL--------LRE 152 (292)
T ss_dssp ----SSHCHHHHHHHHHS-TTCSCSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTHTTTHHH--------CCH
T ss_pred ----CChHHHHHHHHhhc-cCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccchhh--------HHH
Confidence 78889999999982 2236789999999999999999666 999999999999999966555442 345
Q ss_pred HHHHHHHHHHHHHhhcccchh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 317 IRRLSTQVIRVKWSLHARDEI--------------------------STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQD 370 (497)
Q Consensus 317 I~~LRr~li~LRR~l~p~rEi--------------------------~l~rllEdleslre~l~~l~d~~~S~vs~~iN~ 370 (497)
|..+|+++..+++.+.+.+++ ++.++.+.++.+++++..+++.+.+.++ +
T Consensus 153 l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~ 228 (292)
T PF01544_consen 153 LFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLS----N 228 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----C
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 556666666555544333221 4556666667777777777777777766 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHH--HHHHHHHHH
Q 040491 371 RSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALF--SGILFLLGV 425 (497)
Q Consensus 371 rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~--l~iMlliav 425 (497)
++|++||+||++|+||+|+|||||+|||||.+||+.+ |+|||+++ +++|+++++
T Consensus 229 ~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~p~~~-~~~g~~~~~~~~~~~~~~~ 284 (292)
T PF01544_consen 229 RQNRVMKVLTIVTAIFLPLTFITGIFGMNFKGMPELD-WPYGYFFVIILGLMILVAI 284 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS---SSS-SSS-SHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCccC-CccHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999 99988877 666666654
No 6
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=98.74 E-value=4.8e-07 Score=94.78 Aligned_cols=72 Identities=29% Similarity=0.435 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 366 AWLQDRSLTVTHN---LGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 366 ~~iN~rmN~VMKv---LTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
-.++++-|+.|.. ||+-|..+..-++|+|+||||.+ .+..+ .+|+|+++++++++++++++...+.|.+.||
T Consensus 336 I~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~-~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~kr 410 (414)
T KOG2662|consen 336 IQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLP-SSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKR 410 (414)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-chhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3355677777764 99999999999999999999998 56666 7999999999999999998888888888777
No 7
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=90.94 E-value=9.2 Score=41.26 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-H-HHHHHHHHH-----HHHHHHH
Q 040491 314 NQEIRRLSTQVIRVKWSLHAR-DEISTREMIEEQEAVRGRLFTIQ-DVMQSTVRAW-L-QDRSLTVTH-----NLGVFGG 384 (497)
Q Consensus 314 ~~~I~~LRr~li~LRR~l~p~-rEi~l~rllEdleslre~l~~l~-d~~~S~vs~~-i-N~rmN~VMK-----vLTIiSa 384 (497)
..+|+.||.++..+.--+..+ .| +.+++.|.+|++..+++.+- ...+..+.-. + |-+.+.++- +||++++
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~e-RaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inllL~l~~v 353 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYE-RARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLLLTLLTV 353 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence 467899999887765434333 34 78899999999988887665 1111111100 0 111112221 2455554
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCchHHHHH
Q 040491 385 CGLILSIITGLFGINVDGIPGARGSPYAFALFS 417 (497)
Q Consensus 385 IflPLTfItGiYGMNF~~MPel~~~pyGF~i~l 417 (497)
+++..+.++ ||. +|.+. +++-...++
T Consensus 354 lLv~vSt~~-----~~~-~Pl~~-tR~r~~~t~ 379 (395)
T PF10267_consen 354 LLVFVSTVA-----NCP-LPLTR-TRLRTLTTL 379 (395)
T ss_pred HHHHHHHHh-----cCC-cHHhh-ccHHHHHHH
Confidence 444444444 345 89999 886554333
No 8
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.51 E-value=1.2 Score=42.45 Aligned_cols=63 Identities=30% Similarity=0.406 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHhhccCCcch
Q 040491 377 HNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSG-ILFLLGVVLIAIGLLYLGLKKPILD 443 (497)
Q Consensus 377 KvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~-iMlliav~l~~~~l~~~~~k~~~~~ 443 (497)
++.++++.|...+-+++|+-|-=+. .|++. -.|...++ ++++++++++..|+.++..+++...
T Consensus 5 ~i~~i~~iilgilli~~gI~~Lv~~-~~~l~---~~~s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~ 68 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAALVLF-ISGLG---ALISFILGIALLALGVVLLSLGLLCLLSKRPVQS 68 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 4455555555555666666664433 34344 23333333 3444577788888888877776544
No 9
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=90.41 E-value=15 Score=40.07 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040491 371 RSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLK 438 (497)
Q Consensus 371 rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k 438 (497)
++-++.-=|+|+++-.- +.|+.|.=++++...+ +|+.=-++.++++-+.++.+|+++.+++.+
T Consensus 356 rLQqtVEGLSVvAIsYY----~vgL~~y~~k~l~~~g-~~~~~~l~~g~~vP~v~~~vw~~~rrir~~ 418 (420)
T PF11902_consen 356 RLQQTVEGLSVVAISYY----VVGLLGYLLKGLKAAG-LPVDPELATGLAVPVVLLAVWLGVRRIRRR 418 (420)
T ss_pred HHHHHhhhHHHHHHHHH----HHHHHHHHHhhHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444777776554 4556666666666666 666667778888888887888887766543
No 10
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=89.72 E-value=3.3 Score=36.50 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040491 379 LGVFGGCGLILSIITGLFGINVDGIPGA--RGSPYAFALFSGILFLLGVVLIAIGLLYLGL 437 (497)
Q Consensus 379 LTIiSaIflPLTfItGiYGMNF~~MPel--~~~pyGF~i~l~iMlliav~l~~~~l~~~~~ 437 (497)
+.+++++|+-.+++...++..+--.|.. . ..+||.++.++.+++++++++++...+..
T Consensus 40 ~~~~a~vl~~~~l~~l~~al~~~l~~~~~~~-~~~a~liv~~~~l~la~i~~~~~~~~l~~ 99 (121)
T PF07332_consen 40 LLVLAAVLALLALLFLLVALVFALWEALGLP-PWLAFLIVAGLYLLLALILLLIGRRRLRR 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555554444444311211 2 23688888888888888888777666653
No 11
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=77.33 E-value=11 Score=36.27 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=15.6
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhhhccC
Q 040491 373 LTVTHNL--GVFGGCGLILSIITGLFGIN 399 (497)
Q Consensus 373 N~VMKvL--TIiSaIflPLTfItGiYGMN 399 (497)
+.+.+++ ++++++.+..+++++++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 2 KYIIRFIFRWILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444 35566666667777777654
No 12
>COG3462 Predicted membrane protein [Function unknown]
Probab=77.01 E-value=11 Score=33.63 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHh--hhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 040491 379 LGVFGGCGLILSIITG--LFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIG 431 (497)
Q Consensus 379 LTIiSaIflPLTfItG--iYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~ 431 (497)
.++++++-+.|+.+.| +|-||.-+|-+ --||.|++.-+|.+++++.+++.
T Consensus 16 iavi~~v~li~~~~~gg~~y~~gy~gm~G---G~yGm~lImpI~~~vvli~lvvf 67 (117)
T COG3462 16 IAVIAVVGLIPSGFHGGAFYPGGYRGMMG---GLYGMWLIMPIFWAVVLIFLVVF 67 (117)
T ss_pred HHHHHHHHHhhcccccCcccCCCcccccc---chhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443 44456544543 24677777777776665544433
No 13
>PRK09546 zntB zinc transporter; Reviewed
Probab=74.21 E-value=1.1e+02 Score=31.54 Aligned_cols=54 Identities=15% Similarity=0.004 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 040491 370 DRSLTVTHNLGVFGGCGLILSIITGLF--GINVDGIPGARGSPYAFALFSGILFLLGV 425 (497)
Q Consensus 370 ~rmN~VMKvLTIiSaIflPLTfItGiY--GMNF~~MPel~~~pyGF~i~l~iMlliav 425 (497)
|+..++|+++|++.....-+|=|-|+= ||-+-+.|. . +++.-.+.+++++++..
T Consensus 261 N~~m~~Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~-g-y~~~l~im~~i~~~~~~ 316 (324)
T PRK09546 261 NRRTYTMSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPF-G-FSIFCLLLVVLIGGVAW 316 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcCCcc-h-HHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999975 798877774 4 55444444444444443
No 14
>COG5487 Small integral membrane protein [Function unknown]
Probab=74.06 E-value=8.2 Score=29.83 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCC
Q 040491 382 FGGCGLILSIITGLFGINVDGIPGAR 407 (497)
Q Consensus 382 iSaIflPLTfItGiYGMNF~~MPel~ 407 (497)
|+.||+...+|+|.+| |.++-+..
T Consensus 4 waliFlvialIa~~lG--FgGiagaa 27 (54)
T COG5487 4 WALIFLVIALIAGALG--FGGIAGAA 27 (54)
T ss_pred HHHHHHHHHHHHHHhC--cccHHHHH
Confidence 8899999999999999 46666554
No 15
>PF15050 SCIMP: SCIMP protein
Probab=70.53 E-value=8.4 Score=34.88 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=18.8
Q ss_pred CCchHHHHHHHHHH---HHHHHHHHHHHHhhccC
Q 040491 409 SPYAFALFSGILFL---LGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 409 ~pyGF~i~l~iMll---iav~l~~~~l~~~~~k~ 439 (497)
|.--||+++++.++ ++++++++++.+|.+|+
T Consensus 4 Wr~nFWiiLAVaII~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 4 WRDNFWIILAVAIILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45568887775433 34556666666666554
No 16
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=69.74 E-value=6.5 Score=44.61 Aligned_cols=40 Identities=15% Similarity=-0.000 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHH
Q 040491 379 LGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILF 421 (497)
Q Consensus 379 LTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMl 421 (497)
+.+.+.-++|.+++.+.++..+. .... |+|+|++.+++..
T Consensus 168 ~~~~~~~~i~~~~~~~~ia~~~~--~~~~-WRw~~~~~~i~~~ 207 (599)
T PF06609_consen 168 LAIASIPFIITTWISPLIAQLFA--AHSG-WRWIFYIFIIWSG 207 (599)
T ss_pred hHHHHHHHHhhhcccHHHHHHhc--cCCC-cchHHHHHHHHHH
Confidence 45556667788888888888775 3346 9999987755433
No 17
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.46 E-value=14 Score=29.15 Aligned_cols=21 Identities=33% Similarity=0.369 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 040491 411 YAFALFSGILFLLGVVLIAIG 431 (497)
Q Consensus 411 yGF~i~l~iMlliav~l~~~~ 431 (497)
...++++++++++|+++.++.
T Consensus 18 ~pl~l~il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLL 38 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555444433
No 18
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=65.24 E-value=23 Score=29.65 Aligned_cols=25 Identities=24% Similarity=0.082 Sum_probs=17.0
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHH
Q 040491 403 IPGARGSPYAFALFSGILFLLGVVLI 428 (497)
Q Consensus 403 MPel~~~pyGF~i~l~iMlliav~l~ 428 (497)
+.... +|.|||++-=..+++-++++
T Consensus 35 ~~~~G-fPlgfw~aaQGsi~~fviLi 59 (77)
T TIGR03647 35 FTFFG-FPLGFWFAQQGSIYVFVVLI 59 (77)
T ss_pred CeeCC-CChHHHHHHhhHHHHHHHHH
Confidence 44557 99999987776666554443
No 19
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=64.88 E-value=2.1e+02 Score=31.02 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 040491 314 NQEIRRLSTQVIRVKWSLHARDEISTREMIEEQEAVRGRLFTI 356 (497)
Q Consensus 314 ~~~I~~LRr~li~LRR~l~p~rEi~l~rllEdleslre~l~~l 356 (497)
+.+|+.||.++..+.--+..+.--+.+.+.|.+|++..+++-+
T Consensus 323 QnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKl 365 (455)
T KOG3850|consen 323 QNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKL 365 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889888877655444443116888888888888877654
No 20
>PF13994 PgaD: PgaD-like protein
Probab=64.00 E-value=19 Score=32.94 Aligned_cols=85 Identities=15% Similarity=0.092 Sum_probs=43.8
Q ss_pred HHHH-HHHHHhhhccCCCC--CCCCCCCCchHHHHHHHHHHHHHHHH-----HHHHHHhhccCCcchhhhhhhHHhHHHH
Q 040491 385 CGLI-LSIITGLFGINVDG--IPGARGSPYAFALFSGILFLLGVVLI-----AIGLLYLGLKKPILDEHVEVRKLELEGL 456 (497)
Q Consensus 385 IflP-LTfItGiYGMNF~~--MPel~~~pyGF~i~l~iMlliav~l~-----~~~l~~~~~k~~~~~~~~~~~~~~~~~~ 456 (497)
++.| +|++.+++|.+..+ |+ .. ..-+....+.+-++++++.. |..+-+++|++ -++.........+|+
T Consensus 31 L~~pl~~ll~~ll~~~~~~~~~~-~~-~~~~~~~~l~~y~~i~~~~a~~Li~Wa~yn~~Rf~~--~~rr~~~~~~~~~el 106 (138)
T PF13994_consen 31 LWRPLLTLLAWLLGLHLFYPQMS-LG-GFLSSLNTLQIYLLIALVNAVILILWAKYNRLRFRG--RRRRRRPPPVSDEEL 106 (138)
T ss_pred HHHHHHHHHHHHHccccccchhh-hc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhccCCCCCCHHHH
Confidence 4445 47888999998653 32 22 12222222222222222222 22223333333 222222222777888
Q ss_pred HHHHHHHHHHHHhhhhc
Q 040491 457 VKMFEQEAESHAQVRKS 473 (497)
Q Consensus 457 ~~~~~~~~~~~~~~~~~ 473 (497)
-+.|+=.++.-+++|+.
T Consensus 107 A~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 107 ARSFGLSPEQLQQLRQA 123 (138)
T ss_pred HHHcCCCHHHHHHHHhC
Confidence 99999888888888774
No 21
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=63.79 E-value=1.9e+02 Score=30.03 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=77.2
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHH-----HHHHHHHHHHHhhcccchh--hHH
Q 040491 268 AHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQEIR-----RLSTQVIRVKWSLHARDEI--STR 340 (497)
Q Consensus 268 ~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~~I~-----~LRr~li~LRR~l~p~rEi--~l~ 340 (497)
..++..+.|. +.+.+..-++++|+++-. +.+++. ....++..+||.+...+.. ..+
T Consensus 138 ~~l~~~lld~----i~d~~~~~le~i~~~~~~-------------ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~ 200 (322)
T COG0598 138 DELLYALLDA----IVDNYFPVLEQIEDELEA-------------IEDQLLASTTNEELERLGELRRSLVYLRRALAPLR 200 (322)
T ss_pred HHHHHHHHHH----HHHhhHHHHHHHHHHHHH-------------HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455555553 667777788888877632 222332 3666677777776555432 234
Q ss_pred HHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040491 341 EMIE-----------------------EQEAVRGRLFTIQDVMQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGLFG 397 (497)
Q Consensus 341 rllE-----------------------dleslre~l~~l~d~~~S~vs~~iN~rmN~VMKvLTIiSaIflPLTfItGiYG 397 (497)
+++. ++.++.++++.+.+...+++++..+...|+.=.++-++|++-..+.-.|=+-|
T Consensus 201 ~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIag 280 (322)
T COG0598 201 DVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITG 280 (322)
T ss_pred HHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHc
Confidence 4332 23345556666777777777777777788877888888888888888888887
Q ss_pred cCCCCCCCCCCCC
Q 040491 398 INVDGIPGARGSP 410 (497)
Q Consensus 398 MNF~~MPel~~~p 410 (497)
. |+ |=.-. -|
T Consensus 281 i-yG-MNf~~-mP 290 (322)
T COG0598 281 F-YG-MNFKG-MP 290 (322)
T ss_pred c-cc-cCCCC-Cc
Confidence 6 43 65544 44
No 22
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=61.33 E-value=15 Score=31.54 Aligned_cols=55 Identities=18% Similarity=0.096 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCcchhhhhhhHHhHHHHHHHHHHHHHHHHhhhhcC
Q 040491 420 LFLLGVVLIAIGLLYLGLKKPILDEHVEVRKLELEGLVKMFEQEAESHAQVRKSV 474 (497)
Q Consensus 420 Mlliav~l~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (497)
.++++++.+++|.+||..++--.+++-...+-+-..-.+.=...+=+|.++|+..
T Consensus 8 ~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 8 GGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566677777777644343333333333333344444445677887754
No 23
>COG4327 Predicted membrane protein [Function unknown]
Probab=60.60 E-value=11 Score=32.70 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=22.2
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCchHHHHHHH
Q 040491 387 LILSIITGLFGINVDGIPGARGSPYAFALFSGI 419 (497)
Q Consensus 387 lPLTfItGiYGMNF~~MPel~~~pyGF~i~l~i 419 (497)
...||++-+|---+..|-.++ ||+|||+.-=.
T Consensus 29 flVSfvvi~fa~alst~rifg-~pf~ywma~QG 60 (101)
T COG4327 29 FLVSFVVILFARALSTMRIFG-WPFGYWMAQQG 60 (101)
T ss_pred HHHHHHHHHHHHhhcccEEec-cchhhhhhcCC
Confidence 445666666666666677778 99999976443
No 24
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=58.61 E-value=1.7e+02 Score=27.82 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 040491 338 STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGAR 407 (497)
Q Consensus 338 ~l~rllEdleslre~l~~l~d~~~S~vs~~iN~rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~ 407 (497)
...++.++++...+++....+.|...+. .-|.. +--.|-++++|++|+. -+|.++
T Consensus 119 ~~~~l~~~l~~~E~~I~~aR~~YN~av~-----~yN~~--------i~~FP~~lvA~~~gf~--~~~~f~ 173 (186)
T PF04011_consen 119 NFQQLMAQLEETENRIAAARRAYNDAVR-----DYNTA--------IRQFPTNLVAGIFGFK--PKEYFE 173 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH--------H---------------------S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH--------HHhccHHHHHHhcCCC--cCCCcc
Confidence 4677778888888888888888888765 23331 1127999999999954 456544
No 25
>PRK13682 hypothetical protein; Provisional
Probab=57.08 E-value=10 Score=29.37 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCC
Q 040491 382 FGGCGLILSIITGLFGINVDGIPGAR 407 (497)
Q Consensus 382 iSaIflPLTfItGiYGMNF~~MPel~ 407 (497)
|+.+|+...+|+|++|. .++-+..
T Consensus 4 waliFliiA~iA~~lGF--~GiAg~a 27 (51)
T PRK13682 4 WAIIFLVIALIAAVLGF--GGIAGAA 27 (51)
T ss_pred HHHHHHHHHHHHHHhcc--chHHHHH
Confidence 78999999999999995 5555444
No 26
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=56.87 E-value=9.8 Score=38.56 Aligned_cols=65 Identities=15% Similarity=0.048 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhccCCCCCCCCC--CC--CchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040491 374 TVTHNLGVFGGCGLILSIITG-LFGINVDGIPGAR--GS--PYAFALFSGILFLLGVVLIAIGLLYLGLK 438 (497)
Q Consensus 374 ~VMKvLTIiSaIflPLTfItG-iYGMNF~~MPel~--~~--pyGF~i~l~iMlliav~l~~~~l~~~~~k 438 (497)
+|.=+++-++.-+.|++-=.- |||||+..=|-.. +| .|+||+++++++++-+++++.+..|+..|
T Consensus 179 nVTVvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PRK15348 179 KISILMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYQLMLSLTGLLLGVGILIGYFCLRRR 248 (249)
T ss_pred ceEEEecCCccccCCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334445555666644444 8999998534221 02 46788888888877777777776666543
No 27
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=56.68 E-value=4e+02 Score=31.50 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 040491 375 VTHNLGVFGGCGLILSIITGLFGINVDGIPGA 406 (497)
Q Consensus 375 VMKvLTIiSaIflPLTfItGiYGMNF~~MPel 406 (497)
+.-.+.++-++++-+.++.|++|-.=...|..
T Consensus 419 il~~~llLIv~~~~lGLl~G~~G~~~~~~p~~ 450 (806)
T PF05478_consen 419 ILCCVLLLIVLCLLLGLLCGCCGYRRRADPTD 450 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCcc
Confidence 33334444556666888999999665555643
No 28
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=55.58 E-value=2.3e+02 Score=28.50 Aligned_cols=35 Identities=6% Similarity=0.137 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-c-cCCCCCC
Q 040491 370 DRSLTVTHNLGVFGGCGLILSIITGLF-G-INVDGIP 404 (497)
Q Consensus 370 ~rmN~VMKvLTIiSaIflPLTfItGiY-G-MNF~~MP 404 (497)
.+.+..++=++++-.||+.-++|.-+- + |+|=++|
T Consensus 145 k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~ 181 (230)
T PF03904_consen 145 KRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVD 181 (230)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 344455555555555555544443222 2 5554444
No 29
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=55.17 E-value=53 Score=27.75 Aligned_cols=24 Identities=21% Similarity=0.157 Sum_probs=15.7
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHH
Q 040491 404 PGARGSPYAFALFSGILFLLGVVLI 428 (497)
Q Consensus 404 Pel~~~pyGF~i~l~iMlliav~l~ 428 (497)
.... +|.|||+.-=..+++-++++
T Consensus 40 ~~~G-fPlgfw~aaQGsi~~fviLi 63 (81)
T PF13937_consen 40 TFGG-FPLGFWFAAQGSIIVFVILI 63 (81)
T ss_pred eeCC-CChHHHHHHHhHHHHHHHHH
Confidence 3446 89999987766665544433
No 30
>COG4949 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=54.63 E-value=2.6e+02 Score=29.65 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 040491 371 RSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKP 440 (497)
Q Consensus 371 rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~ 440 (497)
++..+.-=|+|.+ +--.+.|++|-=-+ |-.+.||.+=-+++++.+=++++.+|+++.+.+.|+-
T Consensus 356 rLQqtVEGLSvaA----vsYYVvGLiGYl~K--~~sh~~p~~pevvt~~~VP~av~~vw~~vrRiRr~h~ 419 (424)
T COG4949 356 RLQQTVEGLSVAA----VSYYVVGLIGYLAK--AWSHGWPVDPEVVTGGSVPFAVLGVWWVVRRIRRKHL 419 (424)
T ss_pred HHHHHhccceehh----hhHHHHHHHHHHHH--HHHhCCCCChhHhhccchhHHHHHHHHHHHHHHHhhc
Confidence 3333333355444 44567788887665 5455588888899999999999899999888877763
No 31
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=53.47 E-value=3.6e+02 Score=31.82 Aligned_cols=31 Identities=23% Similarity=0.105 Sum_probs=15.5
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 040491 403 IPGARGSPYAFALFSGILFLLGVVLIAIGLLYL 435 (497)
Q Consensus 403 MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~ 435 (497)
.|..+ +|+++-..+..++.+++++.+.++++
T Consensus 403 ~~~~~--~y~~yR~~~~lil~~~llLIv~~~~l 433 (806)
T PF05478_consen 403 EDEYE--KYDSYRWIVGLILCCVLLLIVLCLLL 433 (806)
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 66655555544444444444444444
No 32
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=52.41 E-value=22 Score=30.36 Aligned_cols=25 Identities=32% Similarity=0.139 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCC
Q 040491 377 HNLGVFGGCGLILSIITGLFGINVD 401 (497)
Q Consensus 377 KvLTIiSaIflPLTfItGiYGMNF~ 401 (497)
++|++++.++..+..+.+++..++.
T Consensus 6 ~iL~~Ig~il~il~~~~~l~~~~~~ 30 (100)
T PF13273_consen 6 KILGWIGGILGILFGFFGLLIGFFG 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888887777655555544443
No 33
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=51.83 E-value=74 Score=28.83 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhccCCcchhhhhhhHHhHHHHHHHHH
Q 040491 423 LGVVLIAIGLLYLGLKKPILDEHVEVRKLELEGLVKMFE 461 (497)
Q Consensus 423 iav~l~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 461 (497)
.++..+.|.+.|++-++|...+|+.--|--++|.-+.-+
T Consensus 70 ~~ls~lsW~~~y~rg~~~~~~~q~d~Ak~ri~d~a~~v~ 108 (118)
T PF01277_consen 70 TALSSLSWMYNYFRGRHPPGPDQLDYAKRRIADTASYVG 108 (118)
T ss_pred HHHHHHHHHHHHhccCCCCCCccHHHHHHHHHHHHHHHH
Confidence 334455678888888888877777666655555444333
No 34
>COG4726 PilX Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.51 E-value=28 Score=34.01 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=28.5
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hhccCCcchhhh
Q 040491 403 IPGARGSPYAFALFSGILFLLGVVLIAIGLLY-LGLKKPILDEHV 446 (497)
Q Consensus 403 MPel~~~pyGF~i~l~iMlliav~l~~~~l~~-~~~k~~~~~~~~ 446 (497)
+++.. -+=||-+++++|+++.+.++.++..+ ..+.+++|.+..
T Consensus 6 ~r~~r-~qRG~~LivvL~~LvvltLl~l~~~r~~llqeRiSaN~~ 49 (196)
T COG4726 6 IRGSR-RQRGFALIVVLMVLVVLTLLGLAAARSVLLQERISANER 49 (196)
T ss_pred CCCcc-ccCceEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 45566 67799888888877776666655444 456666666544
No 35
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=50.94 E-value=41 Score=30.85 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=19.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 410 PYAFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 410 pyGF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
.+|+|+++++++++.++.+++..+++..++
T Consensus 20 a~GWwll~~lll~~~~~~~~~~~r~~~~~~ 49 (146)
T PF14316_consen 20 APGWWLLLALLLLLLILLLWRLWRRWRRNR 49 (146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 378888888777766655555555555443
No 36
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=49.49 E-value=1.3e+02 Score=25.86 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcch
Q 040491 369 QDRSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKPILD 443 (497)
Q Consensus 369 N~rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~~~~ 443 (497)
+|..|+.++++.+..+++..+.++.... +...+.+.+++-++-++|=.++..+||-.=
T Consensus 16 ~~~~n~~lH~igvp~~~~~~~~~~~~~~-----------------~~~~l~~~~~g~~~q~~GH~~~E~~~Pa~~ 73 (95)
T PF06127_consen 16 RNPINRALHFIGVPLIIFSLLLLLARIP-----------------WWLALAVFVVGWGLQFIGHFFFEKNKPAFF 73 (95)
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHcc-----------------HHHHHHHHHHHHHHHHHhHHHHHcCCCcch
Confidence 4778887777666555544433332221 334445566666777888777888887543
No 37
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=49.42 E-value=75 Score=30.82 Aligned_cols=57 Identities=23% Similarity=0.164 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHH-HhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 378 NLGVFGGCGLILSII-TGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 378 vLTIiSaIflPLTfI-tGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
+|++++++.+..+++ +|-.+=+-. .|+ -..|+++.++..+++++ .+|++++|.++-|
T Consensus 27 vLgvVs~~iL~F~~~~~~~~~~~~~-~~G---~~~gl~~a~~gl~~l~~-si~~~fry~Rlar 84 (183)
T PF12263_consen 27 VLGVVSAVILLFANLFSGRATSPNR-NPG---LGIGLFLAICGLVALFF-SIFWSFRYTRLAR 84 (183)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCc-CCC---cchHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 478888777766653 222211111 233 34677666665555544 4566777765544
No 38
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=47.55 E-value=2.1e+02 Score=29.09 Aligned_cols=49 Identities=8% Similarity=-0.075 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCCCCCCCCCCchHHHHHHHHH
Q 040491 371 RSLTVTHNLGVFGGCGLILSIITGLF--GINVDGIPGARGSPYAFALFSGILF 421 (497)
Q Consensus 371 rmN~VMKvLTIiSaIflPLTfItGiY--GMNF~~MPel~~~pyGF~i~l~iMl 421 (497)
+.-+++-++|++-+...-+|=+.|+= ||-+-..|. . +++...+.+++.+
T Consensus 256 ~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~-g-y~~~l~~m~~i~~ 306 (318)
T TIGR00383 256 EIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKY-G-YPAVLIVMAVIAL 306 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccCccccchh-H-HHHHHHHHHHHHH
Confidence 34445666777777777777777753 455443332 2 4444443333333
No 39
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=47.30 E-value=40 Score=38.65 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=17.7
Q ss_pred hccCCCCCCCCCCCCchHHHHHHHHHH
Q 040491 396 FGINVDGIPGARGSPYAFALFSGILFL 422 (497)
Q Consensus 396 YGMNF~~MPel~~~pyGF~i~l~iMll 422 (497)
.|.|+.++|..- ....|.+.++.|.+
T Consensus 571 lG~Nl~~l~~~~-~~~~F~~~l~ai~g 596 (636)
T PF05817_consen 571 LGANLSNLPFSP-SAILFHGGLGAIEG 596 (636)
T ss_pred cCcchhhCCCCc-hHHHHHHHHHHHHH
Confidence 488999999876 55566555555444
No 40
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=46.92 E-value=1.8e+02 Score=30.71 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=26.3
Q ss_pred ccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHh
Q 040491 397 GINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKPILDEHVEVRKLE 452 (497)
Q Consensus 397 GMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~~~~~~~~~~~~~ 452 (497)
+-+++.+|..++.|++-.++.++..+++.+ .+...|.|-|.-|-+.++-+..
T Consensus 148 S~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~----~l~~vGikLPgLe~~nQkvEAA 199 (315)
T PF05992_consen 148 SSHVSELPFFGEIPHSLVWAAIIWSLFGTI----LLAFVGIKLPGLEFNNQKVEAA 199 (315)
T ss_pred hccCCcCcccCCCchHHHHHHHHHHHHHHH----HHHHHhccCcchhhhhHHHHHH
Confidence 346777887775666644443333333332 2233355556555555544443
No 41
>COG1422 Predicted membrane protein [Function unknown]
Probab=46.46 E-value=74 Score=31.34 Aligned_cols=46 Identities=26% Similarity=0.116 Sum_probs=29.2
Q ss_pred HHHHhhhcc-CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 390 SIITGLFGI-NVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 390 TfItGiYGM-NF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
++..|+||- |+--+|.++ +.++.+++.+++++.+ +++.+++..+-.
T Consensus 24 ~~~~~i~~~ln~~f~P~i~--~~~p~lvilV~avi~g--l~~~i~~~~liD 70 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLS--PLPPHLVILVAAVITG--LYITILQKLLID 70 (201)
T ss_pred HHHHHHHHHHHHHHhhhcc--ccccHHHHHHHHHHHH--HHHHHHHHHhcc
Confidence 666777765 776789888 5667666666666554 344555555544
No 42
>COG3462 Predicted membrane protein [Function unknown]
Probab=46.35 E-value=95 Score=27.83 Aligned_cols=67 Identities=9% Similarity=-0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040491 370 DRSLTVTHNLGVFGGCGLILSIIT-GLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGL 437 (497)
Q Consensus 370 ~rmN~VMKvLTIiSaIflPLTfIt-GiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~ 437 (497)
.+.|+..-+|--+-++.....++. |+||=-|-.+|.-. ---||+-.+++|-+.+++.+.+.++++.+
T Consensus 3 k~ven~~w~ligliavi~~v~li~~~~~gg~~y~~gy~g-m~GG~yGm~lImpI~~~vvli~lvvfm~~ 70 (117)
T COG3462 3 KKVENFAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRG-MMGGLYGMWLIMPIFWAVVLIFLVVFMFY 70 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCcccCCCccc-cccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777664 56665554333333 33467778888999999888888888743
No 43
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.66 E-value=3e+02 Score=31.47 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhcccCCcch
Q 040491 282 FRKSIFGAADEIELKFMNRRTHED 305 (497)
Q Consensus 282 ~le~Ie~~ideLEd~v~~~~~~e~ 305 (497)
-++.++.++++|+.++-..+..++
T Consensus 399 ~~~~~e~el~~l~~~l~~~~~~e~ 422 (650)
T TIGR03185 399 ELRELEEELAEVDKKISTIPSEEQ 422 (650)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHH
Confidence 466788888888888876655443
No 44
>PF14163 SieB: Superinfection exclusion protein B
Probab=45.64 E-value=55 Score=30.11 Aligned_cols=40 Identities=15% Similarity=-0.211 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 040491 379 LGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGV 425 (497)
Q Consensus 379 LTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav 425 (497)
++..+.+|+|-+++..++==+|. ..|++|+.+++.+.++.
T Consensus 7 i~~~~llf~P~~~~~~l~l~~~~-------~~y~~~i~~~fl~s~s~ 46 (151)
T PF14163_consen 7 IFSGLLLFLPESLLEWLNLDKFE-------IKYQPWIGLIFLFSVSY 46 (151)
T ss_pred HHHHHHHHCCHHHHHHhCcchHH-------HhcchHHHHHHHHHHHH
Confidence 44445678888888876433433 45667766665555543
No 45
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=45.51 E-value=31 Score=29.59 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 040491 378 NLGVFGGCGLIL 389 (497)
Q Consensus 378 vLTIiSaIflPL 389 (497)
.+.+++.+++.+
T Consensus 20 ~~~~~~i~~~~~ 31 (112)
T PF14015_consen 20 RLRIASIILSVL 31 (112)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 46
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=43.81 E-value=4e+02 Score=27.86 Aligned_cols=133 Identities=8% Similarity=-0.046 Sum_probs=84.2
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh--hHHHHHH-
Q 040491 268 AHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQEIRRLSTQVIRVKWSLHARDEI--STREMIE- 344 (497)
Q Consensus 268 ~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~~I~~LRr~li~LRR~l~p~rEi--~l~rllE- 344 (497)
..++..+.|. +++.+.+.+|.++.++-+-...- +.......+..+=+++.++++.....|+. .+++++.
T Consensus 130 ~~vl~~Lld~----iVd~~ad~lE~~~~~ld~ls~~i----f~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~ 201 (316)
T PRK11085 130 YELLLDLFET----KIEQLADEIENIYSDLEKLSRVI----MEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNF 201 (316)
T ss_pred HHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHh----ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555553 77778888888887664321100 00000012334446677888887777764 3455432
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 040491 345 --------------------EQEAVRGRLFTIQDVMQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGLFGINVDGIP 404 (497)
Q Consensus 345 --------------------dleslre~l~~l~d~~~S~vs~~iN~rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MP 404 (497)
+++++.+++..+.|...+++++.++...|+.=.++-++|++-+.....|=+-|+ | ||=
T Consensus 202 l~~~~~~~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagi-y-GMN 279 (316)
T PRK11085 202 LVRKARLPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASS-Y-GMN 279 (316)
T ss_pred HhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-c-ccc
Confidence 234445566677777777777778888888888899999999999999999998 4 476
Q ss_pred CCCCCCc
Q 040491 405 GARGSPY 411 (497)
Q Consensus 405 el~~~py 411 (497)
.-. -|.
T Consensus 280 f~~-mP~ 285 (316)
T PRK11085 280 FEF-MPE 285 (316)
T ss_pred cCC-CCC
Confidence 555 564
No 47
>PF05425 CopD: Copper resistance protein D; InterPro: IPR008457 Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm [].; GO: 0016021 integral to membrane
Probab=42.88 E-value=72 Score=27.36 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 040491 375 VTHNLGVFGGCGLILSIITGLFGI--NVDGIPGARGSPYAFALFSGILFLLGVVLIA 429 (497)
Q Consensus 375 VMKvLTIiSaIflPLTfItGiYGM--NF~~MPel~~~pyGF~i~l~iMlliav~l~~ 429 (497)
+.+.++.++...++.-++||+|-+ .++.-+... ++||-+ +.+.+++.++++.
T Consensus 3 ~~~rFs~~a~~av~~l~~TG~~~a~~~~~~~~l~~-t~yG~~--Ll~K~~L~~~~l~ 56 (105)
T PF05425_consen 3 VLRRFSWIAWAAVAVLVVTGLVMAWLRLGFDALFT-TPYGRL--LLVKLALVLLMLA 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhcc-ChhHHH--HHHHHHHHHHHHH
Confidence 455688888888889999999875 323112334 677744 3333333333333
No 48
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.37 E-value=89 Score=31.00 Aligned_cols=18 Identities=0% Similarity=-0.016 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040491 368 LQDRSLTVTHNLGVFGGC 385 (497)
Q Consensus 368 iN~rmN~VMKvLTIiSaI 385 (497)
+|+.||.-|..|+++|.+
T Consensus 170 ~nesTNsrv~~fSi~Sl~ 187 (210)
T KOG1691|consen 170 TNESTNSRVAWFSILSLV 187 (210)
T ss_pred hhhhhhhHHHHHHHHHHH
Confidence 567888888888887643
No 49
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.80 E-value=68 Score=35.53 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCC
Q 040491 375 VTHNLGVFGGCGLILSIITGLFGINVD 401 (497)
Q Consensus 375 VMKvLTIiSaIflPLTfItGiYGMNF~ 401 (497)
+.-+++||.-+..|+|++.|+.|=|-.
T Consensus 399 ~v~v~~iw~fv~~PL~~~G~i~GkN~~ 425 (593)
T KOG1277|consen 399 IVVVLLIWLFVISPLTVLGGIAGKNRS 425 (593)
T ss_pred hHHHHHHHHHHhchHHHcccccccccc
Confidence 556799999999999999999999964
No 50
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=40.68 E-value=96 Score=33.20 Aligned_cols=56 Identities=16% Similarity=0.025 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---hccCCCCCCCCCCCCchHHHHH-H-HHHHHHHHHHHHHHHHhhc
Q 040491 375 VTHNLGVFGGCGLILSIITGL---FGINVDGIPGARGSPYAFALFS-G-ILFLLGVVLIAIGLLYLGL 437 (497)
Q Consensus 375 VMKvLTIiSaIflPLTfItGi---YGMNF~~MPel~~~pyGF~i~l-~-iMlliav~l~~~~l~~~~~ 437 (497)
++-.++++++...-..++.|+ .|||=+ .+||.|++. . ..+.++.+.+.++.+..-+
T Consensus 21 ~~~~l~~~g~~~~~~~~~~Glg~vtg~~~~-------~~WGl~I~~y~~~~vglaag~~~is~~~~vf 81 (394)
T PRK10881 21 ILGPLIVICMLLIVKRFVFGLGSVSNLNGG-------YPWGIWIAFDVLIGTGFACGGWALAWLVYVF 81 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhcCCCCC-------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455566665666777775 677754 789999885 3 3346666666666554433
No 51
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=40.62 E-value=11 Score=31.59 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCC
Q 040491 377 HNLGVFGGCGLILSIITGLFGINVD 401 (497)
Q Consensus 377 KvLTIiSaIflPLTfItGiYGMNF~ 401 (497)
-.+++++++|++..-+++.||+.+.
T Consensus 12 fw~ali~al~l~~q~v~~~fG~~~~ 36 (78)
T TIGR01598 12 TLIALLGALFLAIQSILDNFGVLWL 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4589999999999999999999766
No 52
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=40.17 E-value=77 Score=30.63 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=23.4
Q ss_pred CCchHHHHHH----HHHHHHHHHHHHHHHHhhccCCcch
Q 040491 409 SPYAFALFSG----ILFLLGVVLIAIGLLYLGLKKPILD 443 (497)
Q Consensus 409 ~pyGF~i~l~----iMlliav~l~~~~l~~~~~k~~~~~ 443 (497)
|-.+||--+- -+++.++++++++++|+++..|.++
T Consensus 24 ~~~~~W~~ls~REq~ll~~~g~vL~l~i~Y~~iWqPl~~ 62 (178)
T PRK09731 24 WLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSE 62 (178)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4445554332 2455556677788999999999866
No 53
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=39.93 E-value=76 Score=34.99 Aligned_cols=55 Identities=24% Similarity=0.187 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHhHHHHH
Q 040491 384 GCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKPILDEHVEVRKLELEGLV 457 (497)
Q Consensus 384 aIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~ 457 (497)
..+++.||..=-||= -.|... +--|--++.|+|.+.+..++ . +|..||+||-.-.
T Consensus 292 mWli~iTFlsiGYGD---iVP~Ty-cGr~v~l~tGivGa~~sall--v-------------AvisRKLeLt~aE 346 (489)
T KOG3684|consen 292 MWLIAITFLSIGYGD---IVPNTY-CGRGVALLTGIVGAGCSSLL--V-------------AVIARKLELTKAE 346 (489)
T ss_pred HHHHHHHHhhcccCc---ccCCcc-ccchHHHHhhhhhhhHHHHH--H-------------HHHHHHHHHHHHH
Confidence 445677888777873 357666 66667777777776554333 2 4568888885443
No 54
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=39.93 E-value=3e+02 Score=25.17 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=13.3
Q ss_pred HHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHH
Q 040491 390 SIITGLFGINVDGIPGARGSPYAFALFSGILFLL 423 (497)
Q Consensus 390 TfItGiYGMNF~~MPel~~~pyGF~i~l~iMlli 423 (497)
+|++|+||-..- .. . +..++=+++++.+++
T Consensus 92 ~~~~~~~~~~~~-~~--~-~~~~~Rvllgl~~al 121 (142)
T PF11712_consen 92 VFFAGWYWAGYS-FG--G-WSFPYRVLLGLFGAL 121 (142)
T ss_pred HHHHHHHHHHHh-hc--c-cchHHHHHHHHHHHH
Confidence 455555554422 11 2 344554444444443
No 55
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=39.09 E-value=1.8e+02 Score=31.10 Aligned_cols=23 Identities=26% Similarity=0.077 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCC
Q 040491 379 LGVFGGCGLILSIITGLFGINVD 401 (497)
Q Consensus 379 LTIiSaIflPLTfItGiYGMNF~ 401 (497)
+.+++++++.+.++..++.+.+.
T Consensus 400 ~~~~~~i~~i~~~~~~~~~~~~~ 422 (511)
T PF09972_consen 400 LIILGIILLILGFILLIVLFIAF 422 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555544
No 56
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.16 E-value=42 Score=30.48 Aligned_cols=17 Identities=6% Similarity=0.202 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 040491 412 AFALFSGILFLLGVVLI 428 (497)
Q Consensus 412 GF~i~l~iMlliav~l~ 428 (497)
=.++++|+|+++.++.+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 35666666666544333
No 57
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=37.81 E-value=1.1e+02 Score=32.20 Aligned_cols=95 Identities=14% Similarity=0.215 Sum_probs=47.7
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCc-chhhhh-------------------hhHHhHHHHHHH
Q 040491 400 VDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKPI-LDEHVE-------------------VRKLELEGLVKM 459 (497)
Q Consensus 400 F~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~~-~~~~~~-------------------~~~~~~~~~~~~ 459 (497)
.+-++..+ .-+.+.++++.+++.+++++..++-|++++|-. .-.++. =|||-..-=..-
T Consensus 188 l~p~~~~~-d~l~lv~Iv~~cvaG~aAliva~~cW~Rlqr~~rlaqk~DY~a~~~gp~~p~~~~~s~GD~kLAqSAQMYH 266 (341)
T PF06809_consen 188 LEPRGSHG-DGLTLVLIVVCCVAGAAALIVAGYCWYRLQREIRLAQKVDYPATAYGPGGPAKDKSSPGDRKLAQSAQMYH 266 (341)
T ss_pred CCCCCCCC-CCeeeehhHHHHHHHHHHHHHhhheEEEecccccccccccccccccCCCCcCCCCCCcchHHHHHHHHHHH
Confidence 33344444 344455555555555556666666666665532 111111 133333223455
Q ss_pred HHHHHHHHHhh-hhcCCCCCCCCCccCCCCCCCCeee
Q 040491 460 FEQEAESHAQV-RKSVPHSTLPPTAADLLPDGASYVL 495 (497)
Q Consensus 460 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (497)
|||.-.+--.+ +++...+......+|--..++||-+
T Consensus 267 YQHQKQQMiamEk~~~~~~~~~~~~sdeeneeGDfTV 303 (341)
T PF06809_consen 267 YQHQKQQMIAMEKHKEEPKELDSDSSDEENEEGDFTV 303 (341)
T ss_pred HHHHHHHHHhhcccCCCCCccccccccccccCCCeeE
Confidence 77766555555 4444444444445555566788865
No 58
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=37.74 E-value=4e+02 Score=26.11 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHH-HHHHHHHHHHHHHH
Q 040491 350 RGRLFTIQDVMQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFA-LFSGILFLLGVVLI 428 (497)
Q Consensus 350 re~l~~l~d~~~S~vs~~iN~rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~-i~l~iMlliav~l~ 428 (497)
.+++..+.+...+..+...|...++.=+++..+|++-+...=+|=+=|. | ||-... -|..-+ +...+.+++++.++
T Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~-f-GMN~~~-~p~~~~~~g~~~~~~~~~~~~ 281 (292)
T PF01544_consen 205 LERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGI-F-GMNFKG-MPELDWPYGYFFVIILGLMIL 281 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTS-T-TS-SS----SSSSSS-SHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hCCccC-CCccCCccHHHHHHHHHHHHH
Confidence 3445555555666666666666777556666655555554333444444 3 355444 443322 22333334555556
Q ss_pred HHHHHHhhccC
Q 040491 429 AIGLLYLGLKK 439 (497)
Q Consensus 429 ~~~l~~~~~k~ 439 (497)
..++.|+.+||
T Consensus 282 ~~~~~~~~~kR 292 (292)
T PF01544_consen 282 VAILLYWWFKR 292 (292)
T ss_dssp HHHHHHCCTTS
T ss_pred HHHHHHHheeC
Confidence 66667777765
No 59
>COG3771 Predicted membrane protein [Function unknown]
Probab=37.63 E-value=1.3e+02 Score=26.06 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=15.0
Q ss_pred CchHHHHHHHHHHHHHHHHH--HHHHHhhccC
Q 040491 410 PYAFALFSGILFLLGVVLIA--IGLLYLGLKK 439 (497)
Q Consensus 410 pyGF~i~l~iMlliav~l~~--~~l~~~~~k~ 439 (497)
.|----.+++.++++.++-| .|+.|+..|-
T Consensus 38 ef~LSTLla~lF~~G~~lgwli~g~fy~k~~l 69 (97)
T COG3771 38 EFRLSTLLATLFAAGFALGWLICGLFYLKVRL 69 (97)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44344444455555544444 5666665543
No 60
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=36.72 E-value=41 Score=35.07 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhccCCcchhhhhhhHHhH
Q 040491 425 VVLIAIGLLYLGLKKPILDEHVEVRKLEL 453 (497)
Q Consensus 425 v~l~~~~l~~~~~k~~~~~~~~~~~~~~~ 453 (497)
.+.+++.|+|.|.|| ..+|+++
T Consensus 272 MvIIYLILRYRRKKK-------mkKKlQY 293 (299)
T PF02009_consen 272 MVIIYLILRYRRKKK-------MKKKLQY 293 (299)
T ss_pred HHHHHHHHHHHHHhh-------hhHHHHH
Confidence 334455666777666 4677766
No 61
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=36.28 E-value=1.5e+02 Score=29.63 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040491 379 LGVFGGCGLILSIITGLFGINVDGIPGARG-SPYAFALFSGILFLLGVVLIAIGLLYLGLK 438 (497)
Q Consensus 379 LTIiSaIflPLTfItGiYGMNF~~MPel~~-~pyGF~i~l~iMlliav~l~~~~l~~~~~k 438 (497)
+..+-.+|+=+++++++.+-=++.+|.+.+ .+.|.+++. +++.+++.++.+++.|+..|
T Consensus 188 ~~G~llmf~G~~~~~~~l~~l~~~~P~lg~l~~~~~~~~~-~~~s~~lsl~~Ia~aW~~yR 247 (248)
T PF07787_consen 188 FIGWLLMFIGFFLLFSPLYTLVDWIPLLGNLVGFGLFLVA-FIISFSLSLLTIALAWLFYR 247 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhceeechhhhHHHHHH-HHHHHHHHHHHHHHhheeeC
Confidence 444444455566666666655567887772 233433333 44445555666676666443
No 62
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=36.21 E-value=1.1e+02 Score=26.97 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-CCcch--hhhhhhHHhHHHHHHHHH
Q 040491 413 FALFSGILFLLGVVLIAIGLLYLGLK-KPILD--EHVEVRKLELEGLVKMFE 461 (497)
Q Consensus 413 F~i~l~iMlliav~l~~~~l~~~~~k-~~~~~--~~~~~~~~~~~~~~~~~~ 461 (497)
||+++++|++++++++++-+++-... ....+ .+..+=+--|.|+..-..
T Consensus 2 fWl~~a~l~~~a~~~v~~pl~r~~~~~~~~~~~~~n~~iyr~qL~ELe~d~~ 53 (117)
T TIGR03142 2 FWIVAALLTLVALLFLLLPLLRRRRAAATVDRDELNLAVYRDRLAELERDLA 53 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887777665554444332111 11222 234444444555555444
No 63
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=35.64 E-value=3.4e+02 Score=24.56 Aligned_cols=19 Identities=5% Similarity=0.052 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 040491 283 RKSIFGAADEIELKFMNRR 301 (497)
Q Consensus 283 le~Ie~~ideLEd~v~~~~ 301 (497)
+.++-|++..++++.-+.+
T Consensus 23 l~ri~dR~R~L~~~~~~~~ 41 (130)
T PF11026_consen 23 LARIVDRIRQLHDELRDAP 41 (130)
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 3346666777777654433
No 64
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=35.63 E-value=82 Score=26.20 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=16.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 409 SPYAFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 409 ~pyGF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
.||||...+++++.- .+++-+++=|.+.|
T Consensus 18 dP~~Fl~~vll~LtP--lfiisa~lSwkLaK 46 (74)
T PF15086_consen 18 DPYEFLTTVLLILTP--LFIISAVLSWKLAK 46 (74)
T ss_pred ChHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 799997665554432 23334555555555
No 65
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.31 E-value=48 Score=34.33 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=18.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 040491 409 SPYAFALFSGILFLLGVVLIAIGLLYLGLKKP 440 (497)
Q Consensus 409 ~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~ 440 (497)
.|||-.+.+++++++.++++++.+.+.|.+.|
T Consensus 259 ~Pcgiaalvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 259 LPYGIAALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 58887766666555555555555444444445
No 66
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=35.20 E-value=2.6e+02 Score=31.07 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040491 316 EIRRLSTQVIRVKWSLHARDEISTREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGL 395 (497)
Q Consensus 316 ~I~~LRr~li~LRR~l~p~rEi~l~rllEdleslre~l~~l~d~~~S~vs~~iN~rmN~VMKvLTIiSaIflPLTfItGi 395 (497)
++..|..++-.....+.+.++ -+...-.++..+..-+..+++.-.. ++.+++||.....+.=..+.-+.+||.+|-.|
T Consensus 15 ~~~~Lh~~i~~cd~~L~~le~-~L~~Fq~~L~~iS~eI~~LQ~~S~~-l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I 92 (508)
T PF04129_consen 15 NFADLHNQIQECDSILESLEE-MLSNFQNDLGSISSEIRSLQERSSS-LNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSI 92 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhH
Confidence 456666666666666665554 3444444444444444444443333 24456677666777778888999999999999
Q ss_pred hccCCC
Q 040491 396 FGINVD 401 (497)
Q Consensus 396 YGMNF~ 401 (497)
--=+++
T Consensus 93 ~~~~v~ 98 (508)
T PF04129_consen 93 CEGPVN 98 (508)
T ss_pred hcCCCC
Confidence 877765
No 67
>PRK11677 hypothetical protein; Provisional
Probab=34.91 E-value=76 Score=29.29 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhhcC
Q 040491 458 KMFEQEAESHAQVRKSV 474 (497)
Q Consensus 458 ~~~~~~~~~~~~~~~~~ 474 (497)
+.|||.|+.-..+..+.
T Consensus 72 ~Ly~HlA~~s~~Llp~~ 88 (134)
T PRK11677 72 QLYQHMAKSSSELLPNL 88 (134)
T ss_pred HHHHHHHHHHHHHcccc
Confidence 45667766666664444
No 68
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=34.80 E-value=68 Score=30.26 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHH
Q 040491 410 PYAFALFSGILFLLGVVLIAIGLLYLGLKKPILDEHVEVRKL 451 (497)
Q Consensus 410 pyGF~i~l~iMlliav~l~~~~l~~~~~k~~~~~~~~~~~~~ 451 (497)
.||-|++=++.+++++++++.++.-.+.|+.....+.+++.|
T Consensus 6 ~yglFlaK~vTvVvaI~~vv~~I~~~~~k~k~~~G~L~Vt~L 47 (155)
T PF08496_consen 6 EYGLFLAKIVTVVVAILAVVGLIVAAAQKKKKKKGELEVTDL 47 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEeeH
Confidence 578787777888888777777777776666544444444433
No 69
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=34.57 E-value=2.2e+02 Score=28.55 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCccC
Q 040491 410 PYAFALFSGILFLLGVVLIAIGLLYLGLKKPILDEHVEVRKLELEGLVKMFEQEAESHAQVRKSVPHSTLPPTAAD 485 (497)
Q Consensus 410 pyGF~i~l~iMlliav~l~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (497)
.|-||+++++++.+.+.|++++-+ +.|.-|.+...+==-.+..-.++|++-.-+. |.+.+
T Consensus 51 ~~~~~~i~gi~~g~l~am~vl~rr--------------a~ra~Y~qieGqpGAa~avL~~lr~~W~~~~--pVa~n 110 (224)
T PF13829_consen 51 SWWYWLIIGILLGLLAAMIVLSRR--------------AQRAAYAQIEGQPGAAGAVLDNLRRGWRVTE--PVAVN 110 (224)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhcCCCchHHHHHHhhcCCcccCC--ceeec
Confidence 356888999998888888877711 3333333333333334455556666443222 55554
No 70
>PTZ00370 STEVOR; Provisional
Probab=34.40 E-value=49 Score=34.34 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=13.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Q 040491 409 SPYAFALFSGILFLLGVVLIAIGLL 433 (497)
Q Consensus 409 ~pyGF~i~l~iMlliav~l~~~~l~ 433 (497)
.|||-.+.+++++++.++++++.+.
T Consensus 255 ~Pygiaalvllil~vvliilYiwly 279 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIWLY 279 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777765555555444444444433
No 71
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=34.00 E-value=48 Score=33.95 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040491 380 GVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLG 424 (497)
Q Consensus 380 TIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMllia 424 (497)
+.-++++.-+|.+.||..+.|..+|.+. .+|..+++++++...
T Consensus 247 ~g~~i~~s~ltt~~gf~~L~~s~~~~~~--~~G~~~~~gi~~~~l 289 (333)
T PF03176_consen 247 TGRAILLSALTTAIGFGSLLFSPFPPLR--QFGLLAAIGILIALL 289 (333)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHH
Confidence 4455667778999999999999899888 788887777765443
No 72
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=34.00 E-value=60 Score=32.93 Aligned_cols=45 Identities=9% Similarity=-0.038 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 040491 378 NLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGV 425 (497)
Q Consensus 378 vLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav 425 (497)
+.|+++.++.--.++.|++ |-=......+ +.++.++++..+...+
T Consensus 3 ~~tiiGli~~~~~i~~g~~-~gg~~~~l~~--~~~~lIV~GGt~ga~l 47 (254)
T PRK08990 3 LATLIGLIGAFAFVIMAMV-LGGGIGMFVD--VPSILIVFGGSLFVVL 47 (254)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCcHHHHhC--HHHHHHHHHHHHHHHH
Confidence 4788888888888888877 5211112233 7777777777666554
No 73
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=33.95 E-value=59 Score=29.34 Aligned_cols=55 Identities=29% Similarity=0.513 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 040491 373 LTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYL 435 (497)
Q Consensus 373 N~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~ 435 (497)
-+.+-.+.+++.+++...++.+++|+=- .++....+.+++.++++++..+++..+
T Consensus 68 ~~~~~~~~~l~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~ag~~~l~~l~~~ 122 (172)
T PF13903_consen 68 MRATIAFLILGLLLLLFAFVFALIGFCK--------RSYTLYLFAGILFILAGLCILIALIVF 122 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666654422 223333334444555555555554433
No 74
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=33.94 E-value=29 Score=35.32 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040491 379 LGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLK 438 (497)
Q Consensus 379 LTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k 438 (497)
+.++++||+...+ ||.+.-..-.+ ..-|.|++++++++++++++.-++.|+..|
T Consensus 201 f~llgllfliiai-----gltvGT~~~A~-~~~giY~~wv~~~l~a~~~~~rs~yy~~mk 254 (256)
T PF09788_consen 201 FFLLGLLFLIIAI-----GLTVGTWTYAK-TYGGIYVSWVGLFLIALICLIRSIYYCCMK 254 (256)
T ss_pred HHHHHHHHHHHHH-----HHhhhhHHHHh-hcCcEeHHHHHHHHHHHHHHHHhheeEEEe
Confidence 5555555544333 44444223334 344678888888888888888888887665
No 75
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=33.43 E-value=1.8e+02 Score=24.28 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcc-hhhhhhhHHhHHHHHHHHHHHHHHHHhh
Q 040491 413 FALFSGILFLLGVVLIAIGLLYLGLKKPIL-DEHVEVRKLELEGLVKMFEQEAESHAQV 470 (497)
Q Consensus 413 F~i~l~iMlliav~l~~~~l~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (497)
|.++-++.+++.++.+|+.+-|...++.-. -.+-..+++ +++...=++.++.=..+
T Consensus 5 fl~~Pliif~ifVap~wl~lHY~~k~~~~~~ls~~d~~~L--~~L~~~a~rm~eRI~tL 61 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPLWLILHYRSKRKTAASLSTDDQALL--QELYAKADRLEERIDTL 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 333334444555556666666665555221 111122333 55555555544444333
No 76
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=33.34 E-value=1.3e+02 Score=31.26 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 040491 373 LTVTHNLGVFGGCGLILSIITGLF 396 (497)
Q Consensus 373 N~VMKvLTIiSaIflPLTfItGiY 396 (497)
..=+++++.++.+++.+.++.|+|
T Consensus 228 ~~Plr~~~~~g~~~~~~~~~~~~~ 251 (325)
T PRK10714 228 TTPLRLLSLLGSIIAIGGFSLAVL 251 (325)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888777765
No 77
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=32.34 E-value=1e+02 Score=29.46 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=5.4
Q ss_pred CCCCCCC
Q 040491 401 DGIPGAR 407 (497)
Q Consensus 401 ~~MPel~ 407 (497)
+|||.++
T Consensus 20 ~gmp~ld 26 (181)
T PRK13454 20 PGMPQLD 26 (181)
T ss_pred CCCCCCc
Confidence 4689888
No 78
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.69 E-value=3.6e+02 Score=23.89 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHH
Q 040491 382 FGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLL 423 (497)
Q Consensus 382 iSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlli 423 (497)
|+-|+.-..+++++.+.|.-..+.....||-|.+...+.-+.
T Consensus 4 ~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~ 45 (108)
T PF06210_consen 4 WTFIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLE 45 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHH
Confidence 445556667788888888865554322466665444433333
No 79
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=31.60 E-value=2.4e+02 Score=26.57 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhccC
Q 040491 385 CGLILSIITGLFGIN 399 (497)
Q Consensus 385 IflPLTfItGiYGMN 399 (497)
+++.--.++|+||+|
T Consensus 84 livIgivvaGvygi~ 98 (169)
T COG5130 84 LIVIGIVVAGVYGIR 98 (169)
T ss_pred HHHHhhhhheeeehh
Confidence 344445679999998
No 80
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=31.39 E-value=2.6e+02 Score=22.82 Aligned_cols=46 Identities=26% Similarity=0.423 Sum_probs=26.5
Q ss_pred CchHHHHHHH-HHHHHHHHHHHHHHHhhccCCcchhhhhhhHHhHHHHHHHHHHHHHHHH
Q 040491 410 PYAFALFSGI-LFLLGVVLIAIGLLYLGLKKPILDEHVEVRKLELEGLVKMFEQEAESHA 468 (497)
Q Consensus 410 pyGF~i~l~i-Mlliav~l~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (497)
.|||++.++. |.+++++++++- -|.-||-=|++.-..-+++|.-++
T Consensus 14 gyafyVWlA~~~tll~l~~l~v~-------------sv~qrr~iL~~v~r~~aReaR~~~ 60 (67)
T COG3114 14 GYAFYVWLAVGMTLLPLAVLVVH-------------SVLQRRAILRGVARQRAREARLRA 60 (67)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777765553 333333333322 455667778887777777765443
No 81
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=30.76 E-value=7.6e+02 Score=27.20 Aligned_cols=23 Identities=13% Similarity=-0.101 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhhc
Q 040491 375 VTHNLGVFGGCGLILSI-ITGLFG 397 (497)
Q Consensus 375 VMKvLTIiSaIflPLTf-ItGiYG 397 (497)
.|+.+..+-++++|+.+ +.|++|
T Consensus 222 ~~~k~m~~m~~~~Pim~~~~g~~~ 245 (429)
T PRK00247 222 GMLKFLIVMAILAPIFPLSLGLTG 245 (429)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhc
Confidence 35556666667788654 557777
No 82
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=29.94 E-value=1.8e+02 Score=26.32 Aligned_cols=37 Identities=19% Similarity=0.054 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHH
Q 040491 415 LFSGILFLLGVVLIAIGLLYLGLKKPILDEHVEVRKL 451 (497)
Q Consensus 415 i~l~iMlliav~l~~~~l~~~~~k~~~~~~~~~~~~~ 451 (497)
++.++|++..++.++++-.++...|..--+.---|++
T Consensus 53 ~~pt~~ll~~~~~v~~gg~~l~rlKRGKP~~yl~r~l 89 (121)
T PF11990_consen 53 MIPTGALLGPILGVFVGGKLLARLKRGKPEGYLYRRL 89 (121)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHcCCchhHHHHHH
Confidence 3455555555566677777776666555555555555
No 83
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=29.66 E-value=1.6e+02 Score=24.40 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=17.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 409 SPYAFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 409 ~pyGF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
.++.+....+++++++++..++..++...+.
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~k~~ 120 (121)
T PF02687_consen 90 SPWSFLIVFIIILLISIIASLIPIRRILKIN 120 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3455555666666666666656555544443
No 84
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=29.63 E-value=3.4e+02 Score=22.80 Aligned_cols=53 Identities=9% Similarity=-0.172 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCC-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 040491 380 GVFGGCGLILSIITGLFGINVDGIP-----GARGSPYAFALFSGILFLLGVVLIAIGLLY 434 (497)
Q Consensus 380 TIiSaIflPLTfItGiYGMNF~~MP-----el~~~pyGF~i~l~iMlliav~l~~~~l~~ 434 (497)
|++.+++--.--+.+-||..-. -| -.+ -|--|+..+++..++.+++.++.+++
T Consensus 10 tl~l~l~yf~~W~~~ay~~~~~-~~~~y~~i~G-lPlWF~~SCi~~~il~~~l~~~~vk~ 67 (80)
T PF06196_consen 10 TLGLTLIYFAWWYGFAYGLGNG-DGEEYKYIFG-LPLWFFYSCIGGPILFIILVWLMVKF 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC-CccccccccC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444555666543 23 233 45555556555555555444444333
No 85
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=29.27 E-value=1.8e+02 Score=27.57 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 040491 376 THNLGVFGGCGLILSIITGLFGINVDGIPGAR 407 (497)
Q Consensus 376 MKvLTIiSaIflPLTfItGiYGMNF~~MPel~ 407 (497)
||.|+.+.+. +|+-.+++ =| +||.++
T Consensus 1 ~~~~~~~~~~-~~~~~~~~-~g----~~~~~~ 26 (184)
T PRK13455 1 MKLLSALAAL-AASPALAA-GG----PFFSLS 26 (184)
T ss_pred CchHHHHHHH-ccchHhhc-CC----CCCCCc
Confidence 5556655444 55555555 12 366666
No 86
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=29.17 E-value=3.1e+02 Score=24.28 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 040491 381 VFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGV 425 (497)
Q Consensus 381 IiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav 425 (497)
+.+.+++....+..+++.+++..+...-.|-.||..+++..++..
T Consensus 5 i~~~~~~~~~~~~~~~a~~~~~~~~~~~gp~~fP~~l~~~l~~~~ 49 (141)
T PF07331_consen 5 IIGLVFLAFGAVFLYQAFQIPSFPSGSPGPGFFPRLLGILLLILS 49 (141)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCCCCChHHHHHHHHHHHHHH
Confidence 456667777777777776665333222135567776665554443
No 87
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.97 E-value=3.9e+02 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhcccCCcch
Q 040491 283 RKSIFGAADEIELKFMNRRTHED 305 (497)
Q Consensus 283 le~Ie~~ideLEd~v~~~~~~e~ 305 (497)
++..+.+++.+|.++-+-|+..+
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~d 66 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDD 66 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHH
Confidence 34458888888888887776443
No 88
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=28.79 E-value=1.3e+02 Score=31.16 Aligned_cols=41 Identities=24% Similarity=0.210 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhh---ccCCCCCCCCCCCCchHHHHHHHHHHH
Q 040491 383 GGCGLILSIITGLF---GINVDGIPGARGSPYAFALFSGILFLL 423 (497)
Q Consensus 383 SaIflPLTfItGiY---GMNF~~MPel~~~pyGF~i~l~iMlli 423 (497)
..|+.|+-.+-++| |.||.+.|-.-.|.-||.+-++.+.++
T Consensus 205 ~iiv~pll~Llv~W~klg~Nv~n~pss~~s~~~Fh~gi~g~~vL 248 (287)
T KOG2447|consen 205 GIIVSPLLGLLVLWLKLGANVSNFPSSPTSTLGFHAGIAGILVL 248 (287)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCchhhhhhhHHHHHHHH
Confidence 34666666666665 689999996542334554444444443
No 89
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=28.79 E-value=3e+02 Score=28.36 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 040491 368 LQDRSLTVTHNLGVFGGCGLILSIITGLFGINVD 401 (497)
Q Consensus 368 iN~rmN~VMKvLTIiSaIflPLTfItGiYGMNF~ 401 (497)
.|-++-+.++.++++.++|.-..+++.++...|.
T Consensus 227 ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~ 260 (324)
T PF10292_consen 227 ENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFN 260 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677778888899999999999999988888775
No 90
>PRK11380 hypothetical protein; Provisional
Probab=28.73 E-value=3.4e+02 Score=29.04 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=8.0
Q ss_pred HHHHHHHHhhccCCc
Q 040491 427 LIAIGLLYLGLKKPI 441 (497)
Q Consensus 427 l~~~~l~~~~~k~~~ 441 (497)
+.+..++|.+||+|.
T Consensus 84 ~~l~~~~~~~~~~~~ 98 (353)
T PRK11380 84 IMLGLIVRAGFKKAK 98 (353)
T ss_pred HHHHHHHHHHHccch
Confidence 333455666666544
No 91
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=28.52 E-value=1.8e+02 Score=25.59 Aligned_cols=28 Identities=25% Similarity=0.127 Sum_probs=16.3
Q ss_pred cCCCCCC--CCCCCCchHHHHHHHHHHHHHH
Q 040491 398 INVDGIP--GARGSPYAFALFSGILFLLGVV 426 (497)
Q Consensus 398 MNF~~MP--el~~~pyGF~i~l~iMlliav~ 426 (497)
.|.+..+ .+- |.|-+|..+++++....+
T Consensus 43 ~Nt~~V~~~~lf-g~~~~PLilvil~s~v~G 72 (98)
T COG5416 43 INTDSVEFNYLF-GQWELPLILVILGAAVVG 72 (98)
T ss_pred hccCceEEEeec-chhhhhHHHHHHHHHHHH
Confidence 4887433 234 667777777766554443
No 92
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=28.45 E-value=3e+02 Score=33.47 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 040491 384 GCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYL 435 (497)
Q Consensus 384 aIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~ 435 (497)
++|+|+.|..|.-|-=|. +.|+.++.++.+...+.++++=.++.
T Consensus 451 ~~flPl~~~~G~~g~~~~--------~l~~~v~~~l~~S~~~al~l~P~l~~ 494 (1037)
T PRK10555 451 AVFVPMAFFGGTTGAIYR--------QFSITIVSAMVLSVLVAMILTPALCA 494 (1037)
T ss_pred HHHHHHHhccCchhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999998888776554 44455444444443333444333333
No 93
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=28.42 E-value=1.9e+02 Score=27.83 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhh-hccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 040491 382 FGGCGLILSIITGL-FGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYL 435 (497)
Q Consensus 382 iSaIflPLTfItGi-YGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~ 435 (497)
.++-++-......+ |=||+.|-|... ||--.++..=++++.++....+|++..
T Consensus 64 ~~~~~~l~~~t~~~dyP~~iGGKP~~S-~Pafipi~FEltVL~aa~~~~~g~l~~ 117 (173)
T PF11821_consen 64 FATAFLLQWYTNAVDYPLNIGGKPLFS-WPAFIPITFELTVLFAALGTVLGMLIL 117 (173)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCCC-CcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33333434444444 889999999999 988888877788887777777777765
No 94
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=28.10 E-value=3.4e+02 Score=22.64 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 412 AFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 412 GF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
.|.++.++.+++.++.+|+.+-|..+++
T Consensus 4 ~fl~~plivf~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 4 EFLFVPLIVFMIFVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666666666777888888886655
No 95
>PRK03001 M48 family peptidase; Provisional
Probab=28.06 E-value=2.7e+02 Score=28.32 Aligned_cols=33 Identities=3% Similarity=-0.071 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhhccCCcchhh
Q 040491 413 FALFSGILFLLGVVLIAIG---LLYLGLKKPILDEH 445 (497)
Q Consensus 413 F~i~l~iMlliav~l~~~~---l~~~~~k~~~~~~~ 445 (497)
+.+++++.+++.+++++++ ++.+.-++++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 65 (283)
T PRK03001 30 MLIALLFALGMNFFSYWFSDKMVLKMYNAQEVDENT 65 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCEECCccc
Confidence 4444445555555555444 33433345555443
No 96
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=28.01 E-value=3.5e+02 Score=24.85 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHH--HHHHHHHHHHHHHHhhccC
Q 040491 374 TVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGIL--FLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 374 ~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iM--lliav~l~~~~l~~~~~k~ 439 (497)
+.|-.-++++++|+..=++-=.+|=+.+ .++.+..++-|..+++.= +.+.++.+++.-++.++++
T Consensus 36 ~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~-f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~ 102 (133)
T PF04238_consen 36 KLMLTAFVLSALFLVSYLYYHFLGGSTP-FGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRG 102 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566677777777776554333333333 455543455565555543 3333444445556667666
No 97
>PRK06041 flagellar assembly protein J; Reviewed
Probab=27.94 E-value=9.2e+02 Score=27.26 Aligned_cols=18 Identities=22% Similarity=0.001 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040491 346 QEAVRGRLFTIQDVMQST 363 (497)
Q Consensus 346 leslre~l~~l~d~~~S~ 363 (497)
.+...|.++.+.|.|.+.
T Consensus 179 ~~~~le~L~~~~E~Yvt~ 196 (553)
T PRK06041 179 YERALYSLDVWKDLYVSL 196 (553)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555666666655
No 98
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.65 E-value=6.2e+02 Score=25.18 Aligned_cols=36 Identities=6% Similarity=-0.067 Sum_probs=20.8
Q ss_pred EEEeCCEEEEEEecCCCCCCCcchhHHHHHHHHHhC
Q 040491 220 SWQAQKNLLTALHVKGSTSNINVLGIMEVQELLAAG 255 (497)
Q Consensus 220 ifl~~n~LITv~~~~g~~~~~~~~~i~~vrerl~~~ 255 (497)
+...+++.+-+--.+.+....|...++++.+++.+.
T Consensus 55 ~l~~dg~tylcvadds~gR~ipfaFLe~Ik~~F~k~ 90 (217)
T KOG0859|consen 55 YLVEDGLTYLCVADDSAGRQIPFAFLERIKEDFKKR 90 (217)
T ss_pred EEEeCCeEEEEEEeccccccccHHHHHHHHHHHHHH
Confidence 333444433333222333455788889999998765
No 99
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.48 E-value=2.1e+02 Score=30.32 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=9.4
Q ss_pred cCCcch-hhhhhhHHhHHHHHHHH
Q 040491 438 KKPILD-EHVEVRKLELEGLVKMF 460 (497)
Q Consensus 438 k~~~~~-~~~~~~~~~~~~~~~~~ 460 (497)
++|..+ .+-+.++.-.+-+..++
T Consensus 73 ~~~~~~rr~~~~~~~~~~gl~a~~ 96 (398)
T PRK10747 73 RGWFVGRKRRRARKQTEQALLKLA 96 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344433 23344444444444443
No 100
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=27.14 E-value=4.2e+02 Score=28.43 Aligned_cols=56 Identities=5% Similarity=0.053 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 040491 370 DRSLTVTHNLGVFGGCGLILSIITGLFGIN-VDGIPGARGSPYAFALFSGILFLLGVVLIAI 430 (497)
Q Consensus 370 ~rmN~VMKvLTIiSaIflPLTfItGiYGMN-F~~MPel~~~pyGF~i~l~iMlliav~l~~~ 430 (497)
+..|+.|..++.++-+|+-..+|-|+|=.- |.. . .|-.|++.++..++.++++-.+
T Consensus 222 ~~~ne~L~~f~~~aPlf~f~a~iN~~Yi~s~F~~----~-~p~~y~i~li~~l~a~i~~t~~ 278 (353)
T PF03268_consen 222 NFANESLSSFMTFAPLFCFYALINAVYIVSSFFS----S-VPLLYFICLIFNLIAIIFITFF 278 (353)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhcc----C-CchHHHHHHHHHHHHHHHHHHH
Confidence 566777777999999999999999999764 541 2 4555666666665555544433
No 101
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=26.67 E-value=2.1e+02 Score=27.17 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCC--C----CCCC----C-CCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhh
Q 040491 377 HNLGVFGGCGLILSIITGLFGINVDG--I----PGAR----G-SPYAFALFSGILFLLGVVLIAIGLLYLGLKKPILDEH 445 (497)
Q Consensus 377 KvLTIiSaIflPLTfItGiYGMNF~~--M----Pel~----~-~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~~~~~~ 445 (497)
.+||+++=+...--|..|+.+| +.+ . |... . +.--+++.++++-+ .+.+.|.-.-+++|++ +..
T Consensus 19 ~~lT~~aW~gfi~l~~~~~~~~-~~~~~~~gp~~~~~~~~s~~~tl~~yl~ial~nA-vlLI~WA~YN~~RF~~---eRR 93 (153)
T PRK14584 19 IILTALAWFGFLFLLVRGLLEM-ISRAPHMGPIPLRIYILSGLTTIALYLAIAAFNA-VLLIIWAKYNQVRFQV---ERR 93 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccCcccCCcchhHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc---ccc
Confidence 4578888777778888899988 432 1 2110 0 11122222222211 2233444445556653 444
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHhhhhc
Q 040491 446 VEVRKLELEGLVKMFEQEAESHAQVRKS 473 (497)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (497)
.....++.+|+-.-|.=..+.-+++|+.
T Consensus 94 ~~~~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 94 GHRPDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCCCCChHHHHHHcCCCHHHHHHHHhC
Confidence 5566677788888888888888888763
No 102
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=26.67 E-value=55 Score=33.22 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=23.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 409 SPYAFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 409 ~pyGF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
..|||+..+++++++++++|+++..|+..++
T Consensus 198 ~~~g~f~wl~i~~~l~~~~Y~i~g~~~n~~~ 228 (268)
T PF09451_consen 198 GGWGFFTWLFIILFLFLAAYLIFGSWYNYNR 228 (268)
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhheeecc
Confidence 6788887777778888888887777775555
No 103
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=26.28 E-value=76 Score=37.60 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=6.4
Q ss_pred CCcchhhhhhhHHh
Q 040491 439 KPILDEHVEVRKLE 452 (497)
Q Consensus 439 ~~~~~~~~~~~~~~ 452 (497)
+|+++..+. +++|
T Consensus 57 r~Pt~~ea~-~RLe 69 (820)
T PF13779_consen 57 RWPTRAEAL-RRLE 69 (820)
T ss_pred CCCCHHHHH-HHHh
Confidence 555555543 4443
No 104
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=26.24 E-value=1e+03 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 040491 313 LNQEIRRLSTQVIRVKWSL 331 (497)
Q Consensus 313 l~~~I~~LRr~li~LRR~l 331 (497)
+..++..||++++.-||.+
T Consensus 254 L~~e~~~LK~ELiedRW~~ 272 (683)
T PF08580_consen 254 LEKEAESLKKELIEDRWNI 272 (683)
T ss_pred HHHHHHHHHHHhhhhhHHH
Confidence 5678899999999999965
No 105
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=25.92 E-value=1.2e+02 Score=23.14 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=17.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccC-Ccchh
Q 040491 410 PYAFALFSGILFLLGVVLIAIGLLYLGLKK-PILDE 444 (497)
Q Consensus 410 pyGF~i~l~iMlliav~l~~~~l~~~~~k~-~~~~~ 444 (497)
+.||..++-+.+.+.+..+|+.....-|+. +.|.|
T Consensus 10 ~~~F~~lIC~Fl~~~~~F~~F~~Kqilfr~~~~sne 45 (54)
T PF06716_consen 10 LLAFGFLICLFLFCLVVFIWFVYKQILFRNNPQSNE 45 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcch
Confidence 345554444444444445555555555555 33444
No 106
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=25.43 E-value=1.7e+02 Score=31.79 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----hhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 040491 370 DRSLTVTHNLGVFGGCGLILSIITG-----LFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIG 431 (497)
Q Consensus 370 ~rmN~VMKvLTIiSaIflPLTfItG-----iYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~ 431 (497)
++..+..+.||..+-|+.-.+-.+. +||+- .||..+-...++..++++++.+|
T Consensus 231 ~~~Rr~~H~l~~yGFil~f~aT~va~~yh~~~~~~---------aPyp~~s~~klLg~vGgi~LliG 288 (389)
T PRK15033 231 TLARRRFHHLTFYGFMLCFAATVVATLYHYVLGWH---------APYPFFSLPVLLGTLGGIGLLIG 288 (389)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---------CCCCcccHHHHHHHHHHHHHHHH
Confidence 3556678889999877666554444 56662 34444444444444444444444
No 107
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.43 E-value=76 Score=28.55 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 414 ALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 414 ~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
|+++++++++ ++++++++.+...||
T Consensus 2 W~l~~iii~~-i~l~~~~~~~~~rRR 26 (130)
T PF12273_consen 2 WVLFAIIIVA-ILLFLFLFYCHNRRR 26 (130)
T ss_pred eeeHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4444444443 334444444444433
No 108
>PRK14622 hypothetical protein; Provisional
Probab=24.93 E-value=1.8e+02 Score=25.55 Aligned_cols=31 Identities=3% Similarity=0.039 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 344 EEQEAVRGRLFTIQDVMQSTVRAWLQDRSLT 374 (497)
Q Consensus 344 Edleslre~l~~l~d~~~S~vs~~iN~rmN~ 374 (497)
++.+.+.|++-...+.-...........|+.
T Consensus 61 ed~e~LeDLI~aA~N~A~~k~~~~~~~~m~~ 91 (103)
T PRK14622 61 NDKAMLEDLVTAAVNAAVEKARTAADESMSK 91 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666665544444444444333455555
No 109
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=24.52 E-value=25 Score=35.88 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCc---chhhhhhhHHhHHHHHHHHHHHHHHHHhh
Q 040491 428 IAIGLLYLGLKKPI---LDEHVEVRKLELEGLVKMFEQEAESHAQV 470 (497)
Q Consensus 428 ~~~~l~~~~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (497)
+++|.+||.+|++- +.|++++-+- +.=++|.|+.+.++++|
T Consensus 230 FvlG~l~WKkkq~~~~~~~eni~~~ee--dNEiSMLq~~~~e~~~v 273 (273)
T PF02404_consen 230 FVLGALYWKKKQRSLTQEVENIQINEE--DNEISMLQEKEREFQEV 273 (273)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHhhccccccccccccccch--hhHHHHHHhhhhhhhcC
Confidence 34577788777653 3445555543 44568999888877765
No 110
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=24.51 E-value=4.5e+02 Score=26.15 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 040491 454 EGLVKMFEQEAESHAQVRK 472 (497)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~ 472 (497)
++|...+ .|+|+|.-.+.
T Consensus 174 kk~i~s~-DEgEk~i~y~~ 191 (248)
T PF11368_consen 174 KKWIESC-DEGEKQINYEA 191 (248)
T ss_pred HHHHHhC-CHHHHHHHHHH
Confidence 4555553 67777765443
No 111
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=24.32 E-value=1.6e+02 Score=33.56 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 040491 379 LGVFGGCGLILSIITGLFGINV 400 (497)
Q Consensus 379 LTIiSaIflPLTfItGiYGMNF 400 (497)
+..+++++.-++++..++|+|+
T Consensus 219 ~~a~~~~l~~~~~~~~~~gt~~ 240 (576)
T TIGR00353 219 FKAWTLLLAILAFSLSLLGTFI 240 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999997
No 112
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=24.17 E-value=2.6e+02 Score=25.46 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCC
Q 040491 382 FGGCGLILSIITGLFGINVDGIPG 405 (497)
Q Consensus 382 iSaIflPLTfItGiYGMNF~~MPe 405 (497)
+++......++||++=+...++|.
T Consensus 51 ~~~~~~~~~~vtG~~l~~~~g~~~ 74 (150)
T PF10027_consen 51 FTAPGGILLPVTGLWLAWLLGWPL 74 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 444445556677887777665655
No 113
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=24.03 E-value=3e+02 Score=24.96 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=30.3
Q ss_pred HHHHHHHHhhccC-Cc---chhhhhhhHHhHHHHHHHHHHHHHHHHhhhh
Q 040491 427 LIAIGLLYLGLKK-PI---LDEHVEVRKLELEGLVKMFEQEAESHAQVRK 472 (497)
Q Consensus 427 l~~~~l~~~~~k~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (497)
++.+.++|+-+.+ |. .+++.+..+--|+++...|...+..-++|-.
T Consensus 53 ~~~Yi~l~~~lp~~P~~~~~~~~~~s~~~~l~~~~~~~~~~e~Rlr~mE~ 102 (118)
T PRK10697 53 LVAYIILSFALDPMPDNMAFGEQQPSSSELLDEVDRELAAGEQRLREMER 102 (118)
T ss_pred HHHHHHHHHhccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555543 32 2344556666689999999999998888833
No 114
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.66 E-value=2.3e+02 Score=32.26 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCC
Q 040491 376 THNLGVFGGCGLILSIITGLFGINVD 401 (497)
Q Consensus 376 MKvLTIiSaIflPLTfItGiYGMNF~ 401 (497)
.-.|.+|=.|=.||||+.|++|-+=.
T Consensus 436 ~~ll~LwF~isVPLsf~G~y~g~kk~ 461 (628)
T KOG1278|consen 436 VALLFLWFGISVPLSFVGGYFGFKKP 461 (628)
T ss_pred HHHHHHHHHhhhhHHHhhHHhhccCC
Confidence 34577788888999999999998753
No 115
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.52 E-value=2.4e+02 Score=29.63 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 040491 381 VFGGCGLILSIITGLFGI 398 (497)
Q Consensus 381 IiSaIflPLTfItGiYGM 398 (497)
..|.|..++|+=.|+=||
T Consensus 262 l~tliiaVlt~gfgla~~ 279 (374)
T KOG1608|consen 262 LGTLIIAVLTVGFGLAGA 279 (374)
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 345567788999999998
No 116
>cd03496 SQR_TypeC_CybS SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Eukaryotic SQRs reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. CybS and CybL are the two transmembrane proteins of eukaryotic SQRs. They contain heme and quinone binding sites. CybS is the eukaryotic homolog of the bacterial SdhD subunit. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the transmembrane subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of
Probab=23.31 E-value=3.5e+02 Score=23.72 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=25.4
Q ss_pred HHHHHHHhhhccCC---CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 387 LILSIITGLFGINV---DGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 387 lPLTfItGiYGMNF---~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
+...++=.-+||.. ||+|.-. .+ +.-.++.++...+.++.++|+.|+....
T Consensus 39 ~~~~~~H~~~G~q~vIeDYv~~~~-~~-~~~~~a~~~~~~~s~~~l~Gl~~~~~~d 92 (104)
T cd03496 39 AAALLLHSHWGFESCIIDYVPKRV-GG-KLHKLAMYLLYAGSALSLAGLYYFNTND 92 (104)
T ss_pred HHHHHHHHHhcceeeeeecCCCcc-cc-hHHHHHHHHHHHHHHHHHHHheeeeecC
Confidence 33444445578886 6888322 11 1122233333333445566877776655
No 117
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.27 E-value=73 Score=36.02 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCC---CCCchHHHHHHHH-HHHHHHHHHHHHHHhhccCCcchhhhhhhHH
Q 040491 377 HNLGVFGGCGLILSIITGLFGINVDGIPGAR---GSPYAFALFSGIL-FLLGVVLIAIGLLYLGLKKPILDEHVEVRKL 451 (497)
Q Consensus 377 KvLTIiSaIflPLTfItGiYGMNF~~MPel~---~~pyGF~i~l~iM-lliav~l~~~~l~~~~~k~~~~~~~~~~~~~ 451 (497)
|..++.|+++.|=.+.+-+|=|||= +-+.+ .-|+|-+++++.+ +++++=|. +..-|+|+||+.-|.-|..-++
T Consensus 396 k~~~~lta~l~PGivf~~~f~lN~~-lW~~~SSgAvPF~T~~~ll~LwF~isVPLs-f~G~y~g~kk~~~e~PvrTNqI 472 (628)
T KOG1278|consen 396 KRNAILTAFLFPGIVFAIFFVLNFF-LWGKHSSGAVPFSTMVALLFLWFGISVPLS-FVGGYFGFKKPAIEHPVRTNQI 472 (628)
T ss_pred hhhHHhhhhhcchHHHHHHHHHHHH-hhcCCCCCcccHHHHHHHHHHHHHhhhhHH-HhhHHhhccCCCCCCCcccCCC
Confidence 5689999999999999999999984 33333 1366666555544 34444444 4446888888776666655444
No 118
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.81 E-value=70 Score=27.00 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 040491 372 SLTVTHNLGVFGGCGLILSIITGLFGINVD 401 (497)
Q Consensus 372 mN~VMKvLTIiSaIflPLTfItGiYGMNF~ 401 (497)
++.-.-.++++++|++|.--+.|+||...+
T Consensus 8 ~kN~~~w~ali~~i~l~vq~~~~~fg~~~~ 37 (84)
T PF04531_consen 8 FKNKAFWVALISAILLLVQQVGGLFGWGAD 37 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 333445689999999999999999998554
No 119
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.71 E-value=3.1e+02 Score=26.58 Aligned_cols=10 Identities=10% Similarity=0.198 Sum_probs=4.1
Q ss_pred CchHHHHHHH
Q 040491 410 PYAFALFSGI 419 (497)
Q Consensus 410 pyGF~i~l~i 419 (497)
.+|+..++++
T Consensus 110 ~~gi~tli~~ 119 (206)
T PF06570_consen 110 QYGIITLILV 119 (206)
T ss_pred cccHHHHHHH
Confidence 3444433333
No 120
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=22.51 E-value=1.3e+02 Score=20.28 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 040491 378 NLGVFGGCGLILSIITGLF 396 (497)
Q Consensus 378 vLTIiSaIflPLTfItGiY 396 (497)
.+-.++++++....|||+|
T Consensus 7 w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 7 WFGDIFALFMLVFAITGLI 25 (27)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777775
No 121
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=22.47 E-value=3.5e+02 Score=24.50 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=20.9
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHhhhh
Q 040491 446 VEVRKLELEGLVKMFEQEAESHAQVRK 472 (497)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (497)
.+..+--|+++...|...+..-++|=.
T Consensus 79 ~~~~~~~l~~~~~~~~~~e~Rl~~mE~ 105 (121)
T TIGR02978 79 GQSPRQALREVKREFRDLERRLRNMER 105 (121)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788999999999988888833
No 122
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=22.25 E-value=5.1e+02 Score=28.49 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 040491 365 RAWLQDRSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIG 431 (497)
Q Consensus 365 s~~iN~rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~ 431 (497)
-.+++++.+--.|..-+++.++..+.-+.|++||... -.+++ .+|-||++-++..+.........
T Consensus 337 ~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~-~~g~~-~~~~f~~~a~~~G~~~G~~qs~s 401 (477)
T PF11700_consen 337 FGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPS-FFGLK-SPWEFWVLAVLIGLFMGGIQSAS 401 (477)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhc-ccCcc-cHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445666665444456666677777888899999776 45678 79998876666555444444333
No 123
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=22.16 E-value=4.3e+02 Score=21.36 Aligned_cols=42 Identities=24% Similarity=0.134 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHH
Q 040491 376 THNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGIL 420 (497)
Q Consensus 376 MKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iM 420 (497)
||++-++.-+++.-++-.|+|-|-=+ .+-+ .+-.+....=+.
T Consensus 1 ~Ki~iv~lll~ii~sL~saL~~l~kd--~~~~-~rm~~~L~~RV~ 42 (63)
T PF11137_consen 1 MKILIVLLLLAIIASLFSALFFLVKD--KGSS-KRMVKALGRRVG 42 (63)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhC--CCCC-chHHHHHHHHHH
Confidence 67888888999999999999999665 3333 344444433333
No 124
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=21.77 E-value=2.4e+02 Score=32.51 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhhcc----CCCCCCCCCC---CCc-hHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhH
Q 040491 379 LGVFGGCGLILSIITGLFGI----NVDGIPGARG---SPY-AFALFSGILFLLGVVLIAIGLLYLGLKKPILDEHVEVRK 450 (497)
Q Consensus 379 LTIiSaIflPLTfItGiYGM----NF~~MPel~~---~py-GF~i~l~iMlliav~l~~~~l~~~~~k~~~~~~~~~~~~ 450 (497)
+..+++++.-++|+..++|+ |.- ++..|. .|- |.++.+.+.+++++.+..+. .+....+...+....+|+
T Consensus 271 ~~~~~~~l~~~~~~~~~~gtflvRsg~-l~svHsfa~d~~~G~~lL~~l~~~~~~~l~l~~-~r~~~~~~~~~~~~~SRE 348 (628)
T TIGR03145 271 FSYWTLLLSLFAFSLSLLGTFIVRSGV-LTSVHAFAVDPTRGIALLLLFFLLTASALTLFA-LKANLRQSAVRFGLFSKE 348 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC-cCCccccccCCCchHHHHHHHHHHHHHHHHHHH-HhccccccccccCcccHH
Confidence 77888888999999999999 743 344441 232 65543333333333333333 233333333444455555
Q ss_pred H
Q 040491 451 L 451 (497)
Q Consensus 451 ~ 451 (497)
.
T Consensus 349 ~ 349 (628)
T TIGR03145 349 G 349 (628)
T ss_pred H
Confidence 3
No 125
>PTZ00046 rifin; Provisional
Probab=21.67 E-value=1.1e+02 Score=32.78 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=16.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 409 SPYAFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 409 ~pyGF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
++-++-++.++.+++..+.+++-|+|.|.||
T Consensus 315 taIiaSiiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 315 TAIIASIVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3444444433333333345566677777777
No 126
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=21.54 E-value=71 Score=29.30 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=33.3
Q ss_pred HHHHHhhhccCCCCCCC------CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcch
Q 040491 389 LSIITGLFGINVDGIPG------ARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKPILD 443 (497)
Q Consensus 389 LTfItGiYGMNF~~MPe------l~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~~~~ 443 (497)
..+.-|...+|=...|. .++..+.|+.++++|.+.++.++-+-+-|.+-||....
T Consensus 14 ~~l~q~~~~~~~nsS~la~~~~~s~~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK~E~s 74 (129)
T PF02060_consen 14 SKLWQETVQQSSNSSPLASRSPSSSDDDNEYLYILVVMGFFGFFTVGIMLSYVRSKKREHS 74 (129)
T ss_dssp HHHHHHHHHT--TTSSGGGS-S--TT-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHhcCCCCCCcccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 45667777776332331 12134568888899988888888888888888875533
No 127
>PHA02414 hypothetical protein
Probab=21.50 E-value=5.7e+02 Score=22.59 Aligned_cols=49 Identities=10% Similarity=0.088 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040491 282 FRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQEIRRLSTQVIRVKWSLH 332 (497)
Q Consensus 282 ~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~~I~~LRr~li~LRR~l~ 332 (497)
-+..+-.+++.||+.+..+.-.+...- ..+...+..||.-+..+-+-+.
T Consensus 5 ~in~Lv~~v~~ledKiQ~Gelt~kgdn--~eL~~av~ELRdivvslDKd~A 53 (111)
T PHA02414 5 EINNLVSQVETLEDKIQEGELTDKGDN--KELEVAVAELRDIVVSLDKDVA 53 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCch--HHHHHHHHHHHHHHHHhhhHhh
Confidence 345667788888888876542111000 1245667888888887766443
No 128
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=21.44 E-value=32 Score=39.28 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHhHH-HHHHHHHHHHHH
Q 040491 409 SPYAFALFSGILFLLGVVLIAIGLLYLGLKKPILDEHVEVRKLELE-GLVKMFEQEAES 466 (497)
Q Consensus 409 ~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 466 (497)
-+--.|+++|+++-++++++++.++||-+-| .+|+|+| +-++.+|.++.-
T Consensus 265 ~~~NlWII~gVlvPv~vV~~Iiiil~~~LCR--------k~K~eFqpDa~~niqqR~K~ 315 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLLIIIILYWKLCR--------KNKLEFQPDAMSNIQQRQKP 315 (684)
T ss_pred CCCCeEEEehHhHHHHHHHHHHHHHHHHHhc--------ccccCCCchhhhhccccccc
Confidence 4667899999999999999999999998887 6777765 455666655443
No 129
>PRK11380 hypothetical protein; Provisional
Probab=21.43 E-value=3.2e+02 Score=29.26 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=16.1
Q ss_pred HHHhhccC--CcchhhhhhhHHhHHHHHHHHHH
Q 040491 432 LLYLGLKK--PILDEHVEVRKLELEGLVKMFEQ 462 (497)
Q Consensus 432 l~~~~~k~--~~~~~~~~~~~~~~~~~~~~~~~ 462 (497)
+.|...++ +.++||-+ |+-|.- |.-||+
T Consensus 102 ~~yy~~~~~~~LteEq~r--~L~L~a-Vya~~~ 131 (353)
T PRK11380 102 LRYYQAKGIEPLSEEKRQ--ALQLIA-VYRFYH 131 (353)
T ss_pred HHHHHHcCCCCCCHHHHH--HHHHhh-HHHHHh
Confidence 35666655 67888754 444422 555554
No 130
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=21.11 E-value=1.7e+02 Score=26.94 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhccCC-CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040491 381 VFGGCGLILSIITGLFGINV-DGIPGARGSPYAFALFSGILFLLGVVLIAIGLL 433 (497)
Q Consensus 381 IiSaIflPLTfItGiYGMNF-~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~ 433 (497)
+.+.+....+++......++ ..+|... |... +.+++++++..++++.
T Consensus 3 ~~~~~~a~~~~~l~~~~~~~g~~lp~~p---~~~~---~~l~~la~~~~~~a~~ 50 (138)
T PF11377_consen 3 AAAVVGAVAGWLLLQLLESYGGSLPPIP---WTAG---VTLLVLAAVELWLAWQ 50 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCc---hHHH---HHHHHHHHHHHHHHHH
Confidence 33444444444443333333 3355544 3333 3444444444444443
No 131
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=21.07 E-value=1.1e+02 Score=32.78 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=16.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 409 SPYAFALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 409 ~pyGF~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
++-++-++.++.+++..+.+++-|+|.|.||
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3445544444444443445566677777776
No 132
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=20.88 E-value=80 Score=30.34 Aligned_cols=26 Identities=27% Similarity=0.177 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 414 ALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 414 ~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
++.+++++++.++++=..+++.+.||
T Consensus 103 ~~~~~~~~~~~~~iid~~~l~r~vkk 128 (170)
T PF11241_consen 103 YVTLAMYVLLLLVIIDGVILGRRVKK 128 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333334455555555
No 133
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=20.73 E-value=59 Score=29.55 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 040491 373 LTVTHNLGVFGGCGLILSIITGLFGINVD 401 (497)
Q Consensus 373 N~VMKvLTIiSaIflPLTfItGiYGMNF~ 401 (497)
.+..+.|.+++.++.-+.++.++.||.-.
T Consensus 70 ~~a~r~l~i~s~il~~l~~~l~~~g~~~~ 98 (166)
T PF00822_consen 70 LQAARALMILSIILGFLGLILALFGLCCT 98 (166)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhccccc
Confidence 34677799999999999999999999764
No 134
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.41 E-value=1.4e+02 Score=28.52 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 040491 414 ALFSGILFLLGVVLIAIGLLYLGLKK 439 (497)
Q Consensus 414 ~i~l~iMlliav~l~~~~l~~~~~k~ 439 (497)
=.+.+++++.+++++||.++.+++||
T Consensus 96 R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 96 RALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555555667788888888887
No 135
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.40 E-value=1.8e+02 Score=22.12 Aligned_cols=13 Identities=31% Similarity=0.191 Sum_probs=7.2
Q ss_pred HHHHHHHHhhccC
Q 040491 427 LIAIGLLYLGLKK 439 (497)
Q Consensus 427 l~~~~l~~~~~k~ 439 (497)
..|+|++-+..-+
T Consensus 18 f~~iGl~IyQkik 30 (49)
T PF11044_consen 18 FAWIGLSIYQKIK 30 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666554444
No 136
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=20.23 E-value=4.5e+02 Score=32.06 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 040491 384 GCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIG 431 (497)
Q Consensus 384 aIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~ 431 (497)
+.|+|+.|+.|.-|-=|. |.|+.++.++.+...+.++++=
T Consensus 451 ~~f~Pl~~~~G~~g~~~~--------~~~~~~~~~l~~S~l~al~~vP 490 (1049)
T PRK15127 451 AVFVPMAFFGGSTGAIYR--------QFSITIVSAMALSVLVALILTP 490 (1049)
T ss_pred HHHHHHHHcCCchHHHhH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 468999998877665442 4455544444444433344433
Done!