Query 040491
Match_columns 497
No_of_seqs 270 out of 1623
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:20:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iub_A CORA, divalent cation t 100.0 1.9E-47 6.6E-52 395.2 27.9 259 145-440 71-362 (363)
2 4ev6_A Magnesium transport pro 100.0 3E-46 1E-50 382.8 26.9 245 157-441 68-339 (339)
3 4egw_A Magnesium transport pro 99.9 1.1E-26 3.8E-31 231.4 19.0 197 146-377 51-280 (280)
4 3ck6_A Putative membrane trans 99.9 2E-25 6.8E-30 218.3 18.0 179 157-376 49-252 (252)
5 3nvo_A Zinc transport protein 99.9 4.1E-25 1.4E-29 217.3 18.6 178 157-365 60-262 (264)
6 2bbh_A Divalent cation transpo 99.8 1.9E-20 6.6E-25 184.4 14.6 165 145-337 62-234 (269)
7 2hn1_A CORA, magnesium and cob 99.8 1.5E-19 5.3E-24 178.1 13.5 161 145-337 67-234 (266)
8 4ev6_A Magnesium transport pro 80.5 47 0.0016 33.0 15.9 45 354-398 254-298 (339)
9 2iub_A CORA, divalent cation t 63.4 1.3E+02 0.0043 30.2 17.2 46 353-398 277-322 (363)
10 3rvy_A ION transport protein; 36.0 37 0.0013 32.6 4.9 33 409-441 209-243 (285)
11 2qij_C Core antigen; viral cap 34.7 9.5 0.00032 34.0 0.4 24 389-413 1-24 (157)
12 3hzq_A Large-conductance mecha 32.9 1.1E+02 0.0037 26.4 6.7 48 384-434 57-106 (114)
13 2oar_A Large-conductance mecha 32.5 46 0.0016 30.8 4.6 44 382-428 58-109 (174)
14 3ro2_B Peptide of nuclear mito 31.9 9.2 0.00031 24.6 -0.1 11 106-116 18-28 (28)
15 2etd_A LEMA protein; bromodoma 28.5 3.3E+02 0.011 24.6 12.8 55 338-407 104-158 (171)
16 1scf_A Stem cell factor; steel 24.9 15 0.00052 35.7 0.0 41 428-470 230-273 (273)
17 2knc_B Integrin beta-3; transm 23.6 1.5E+02 0.005 23.7 5.6 12 450-461 41-52 (79)
18 1j8b_A YBAB; hypothetical prot 22.4 71 0.0024 27.2 3.7 31 344-374 67-97 (112)
19 3mk7_C Cytochrome C oxidase, C 20.9 4.3E+02 0.015 25.6 9.7 56 378-435 11-77 (311)
20 4gc0_A D-xylose-proton symport 20.1 47 0.0016 33.1 2.5 22 448-469 466-487 (491)
No 1
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=1.9e-47 Score=395.19 Aligned_cols=259 Identities=16% Similarity=0.179 Sum_probs=203.6
Q ss_pred ccccCCCccc-e-----e-eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEE
Q 040491 145 PYWERPVGPT-W-----C-NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIV 217 (497)
Q Consensus 145 ~~w~~~~~~~-W-----l-~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~ 217 (497)
..|.+..+|+ + + +.++|||++.+++.+. +||||+ |.|++++|++++.+.. +++..... +.+
T Consensus 71 ~~Wi~l~~p~~~~e~~~l~~~f~l~~l~ied~l~~------~~rpk~----e~~~~~lfivl~~~~~-~~~~~~~~-~~~ 138 (363)
T 2iub_A 71 PTWINITGIHRTDVVQRVGEFFGIHPLVLEDILNV------HQRPKV----EFFENYVFIVLKMFTY-DKNLHELE-SEQ 138 (363)
T ss_dssp CEEEEEECTTCHHHHHHHHHHTTCCHHHHHHHHCC------SSCCEE----EEETTEEEEEEEEEEE-ETTTTEEE-EEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHcCcChhHHHHHhCC------CCCCeE----EEECCEEEEEEEeeee-cccccccc-eEE
Confidence 4676665553 4 1 7799999999998876 689999 9999999999999876 33222223 588
Q ss_pred EEEEEeCCEEEEEEecCCCCCCCcchhHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 040491 218 LRSWQAQKNLLTALHVKGSTSNINVLGIMEVQELLAAGGSNI-PRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELK 296 (497)
Q Consensus 218 L~ifl~~n~LITv~~~~g~~~~~~~~~i~~vrerl~~~~~~~-~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~ 296 (497)
++||+++++|||+|++ +...++.+++++++++... ..++.++++.|+|.++|.+.+ +++.+++++|+||++
T Consensus 139 v~~~l~~~~liTv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE~~ 210 (363)
T 2iub_A 139 VSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFV-LLEKIDDEIDVLEEE 210 (363)
T ss_dssp EEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeC-------CCchHHHHHHHHHhcCCccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999987 6788999999998763222 347888999999999999666 999999999999999
Q ss_pred hcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh-------------------------hHHHHHHHHHHHHH
Q 040491 297 FMNRRTHEDMHLVGIILNQEIRRLSTQVIRVKWSLHARDEI-------------------------STREMIEEQEAVRG 351 (497)
Q Consensus 297 v~~~~~~e~~~lL~~~l~~~I~~LRr~li~LRR~l~p~rEi-------------------------~l~rllEdleslre 351 (497)
++.++.++ ..++|+.+||+++.+||.+.|++++ |+.++.+.++.++|
T Consensus 211 v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~d~~~~~~e~~~~~re 282 (363)
T 2iub_A 211 VLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETVPYFRDVYDHTIQIADTVETFRD 282 (363)
T ss_dssp TTSSCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876543 4578999999999999988777654 67788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 040491 352 RLFTIQDVMQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIG 431 (497)
Q Consensus 352 ~l~~l~d~~~S~vs~~iN~rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~ 431 (497)
+++.++|.+.+.++ ++||++||+||+||+||+|||||||+|||||++|||++ |+||||+++++|+++++++
T Consensus 283 ~l~~l~d~~~s~is----~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~-~~~Gy~~~l~~m~~i~~~~---- 353 (363)
T 2iub_A 283 IVSGLLDVYLSSVS----NKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELR-WKWGYPVVLAVMGVIAVIM---- 353 (363)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTSCC---------------CHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc-CcHHHHHHHHHHHHHHHHH----
Confidence 99999999999987 99999999999999999999999999999999999999 9999999999999988653
Q ss_pred HHHhhccCC
Q 040491 432 LLYLGLKKP 440 (497)
Q Consensus 432 l~~~~~k~~ 440 (497)
+.|++.|+|
T Consensus 354 ~~~Fkrk~W 362 (363)
T 2iub_A 354 VVYFKKKKW 362 (363)
T ss_dssp HTTTTSCC-
T ss_pred HHHHHHccc
Confidence 344555556
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3e-46 Score=382.82 Aligned_cols=245 Identities=16% Similarity=0.149 Sum_probs=209.8
Q ss_pred eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEEEEEEEeCCEEEEEEecCCC
Q 040491 157 NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKGS 236 (497)
Q Consensus 157 ~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~L~ifl~~n~LITv~~~~g~ 236 (497)
+.+||||++.+++.+. +||||+ |.|++++|++++.+.. +++. + +.++++|+++++|||+|++
T Consensus 68 ~~~~l~~~~~ed~l~~------~~rpk~----e~~~~~~~iv~~~~~~-~~~~---~-~~~v~i~l~~~~lITv~~~--- 129 (339)
T 4ev6_A 68 KKIGISVSDLQIGLDE------QEIPRV----EEDEDFYLIIYKAPLF-EEDI---T-TTSLGIYIKNNLLLTIHSD--- 129 (339)
T ss_dssp HHHTCCHHHHHHHHCT------TCCCEE----EEETTEEEEECCCCCC-TTTC---C-CCCCEEEEETTEEEEEESS---
T ss_pred HHHCcCHhHHHHhhCC------ccCCeE----EEECCEEEEEEecCcc-CCCc---c-eEEEEEEEECCeeEEeecC---
Confidence 7889999988888875 689999 9999999999998766 3222 2 4678999999999999987
Q ss_pred CCCCcchhHHHHHHHHHhCCCC--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHH
Q 040491 237 TSNINVLGIMEVQELLAAGGSN--IPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILN 314 (497)
Q Consensus 237 ~~~~~~~~i~~vrerl~~~~~~--~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~ 314 (497)
+...++++++++..++.. ...++.+++++|+|.++|.+.+ +++.+++++++||++++.++.++ ..
T Consensus 130 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lld~ivd~~~~-~l~~l~~~i~~lE~~l~~~~~~~--------~l 196 (339)
T 4ev6_A 130 ----KIKAIGRLHKLISTKKPRIVFERGIGFLLYHILNEITRSYSR-ILMNLEDELEELEDKLLAGYDRE--------VM 196 (339)
T ss_dssp ----CCHHHHHHHHHSSSSSSCCCCCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSTTCCCHH--------HH
T ss_pred ----CcchhHHHHHHHHcCCCccccccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhh--------HH
Confidence 688999999998765432 2467899999999999999666 99999999999999999877654 46
Q ss_pred HHHHHHHHHHHHHHHhhcccchh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 315 QEIRRLSTQVIRVKWSLHARDEI-------------------------STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQ 369 (497)
Q Consensus 315 ~~I~~LRr~li~LRR~l~p~rEi-------------------------~l~rllEdleslre~l~~l~d~~~S~vs~~iN 369 (497)
++|+.+|++++.+||.+.|++++ |+.++.+.++.++++++.++|.+.+.++
T Consensus 197 ~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is---- 272 (339)
T 4ev6_A 197 EKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLEN---- 272 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 78899999999999888777654 5667788888899999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 040491 370 DRSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKPI 441 (497)
Q Consensus 370 ~rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~~ 441 (497)
+++|++||+||++|+||+|||||||+|||||++|||++ ||||||+++++|+++++++++ |++.|+|.
T Consensus 273 ~~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~-~~~gy~~~l~~m~~~~~~~~~----~fkrk~WL 339 (339)
T 4ev6_A 273 IKMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLAN-NPQGFWLVMALMVVIIMIFVY----IFRRSGWI 339 (339)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSS-CTTHHHHHHHHHHHHHHHHHH----HHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCcc-CchHHHHHHHHHHHHHHHHHH----HHHHcCCC
Confidence 89999999999999999999999999999999999999 999999999999998876554 45666673
No 3
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.1e-26 Score=231.38 Aligned_cols=197 Identities=16% Similarity=0.102 Sum_probs=159.9
Q ss_pred cccCCCccce--e----eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEEEE
Q 040491 146 YWERPVGPTW--C----NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIVLR 219 (497)
Q Consensus 146 ~w~~~~~~~W--l----~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~L~ 219 (497)
.|.+..+|++ + +.|||||++.+++.+. .||||+ |.|++++|++++.+.. +++ .. +.+++
T Consensus 51 vWIdl~~Pt~eEl~~l~~~f~lh~l~leD~l~~------~~rpKi----e~~~d~~fivl~~~~~-~~~---~~-t~~v~ 115 (280)
T 4egw_A 51 IWIDCYDPKDEELYKLSKKIGISVSDLQIGLDE------QEIPRV----EEDEDFYLIIYKAPLF-EED---IT-TTSLG 115 (280)
T ss_dssp EEEEEESCCHHHHHHHHHHHTCCHHHHHHHTCT------TCCCEE----ECCSSSEEEEEEEEEC-SSS---CE-EEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHCcCHHHHHHHhCc------ccCceE----EEECCEEEEEEEeccc-ccc---ce-eeeEE
Confidence 4555555554 2 7899999988888775 789999 9999999999998876 322 22 58999
Q ss_pred EEEeCCEEEEEEecCCCCCCCcchhHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 040491 220 SWQAQKNLLTALHVKGSTSNINVLGIMEVQELLAAGGSNI--PRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKF 297 (497)
Q Consensus 220 ifl~~n~LITv~~~~g~~~~~~~~~i~~vrerl~~~~~~~--~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v 297 (497)
||+++++|||||+. +...++.+++++..++... ..++.+++|+|+|.++|.+.+ +++.+++++++||+++
T Consensus 116 i~l~~~~lITv~~~-------~~~~~~~v~~~l~~~~~~~~~~~g~~~ll~~lld~ivd~y~~-~l~~i~~~id~lE~~l 187 (280)
T 4egw_A 116 IYIKNNLLLTIHSD-------KIKAIGRLHKLISTKKPRIVFERGIGFLLYHILNEITRSYSR-ILMNLEDELEELEDKL 187 (280)
T ss_dssp EEEETTEEEEEESS-------CCHHHHHHHHHHHHSCCSSSCTTTTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred EEEECCEEEEEecC-------CcchHHHHHHHHHhcCcccccccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999987 6889999999998775322 357889999999999999666 9999999999999999
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh-------------------------hHHHHHHHHHHHHHH
Q 040491 298 MNRRTHEDMHLVGIILNQEIRRLSTQVIRVKWSLHARDEI-------------------------STREMIEEQEAVRGR 352 (497)
Q Consensus 298 ~~~~~~e~~~lL~~~l~~~I~~LRr~li~LRR~l~p~rEi-------------------------~l~rllEdleslre~ 352 (497)
+.++.++ ..++|+.+||+++.+||.+.|++++ |+.++.+.++.++++
T Consensus 188 ~~~~~~~--------~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~Dv~dh~~~~~e~~~~~re~ 259 (280)
T 4egw_A 188 LAGYDRE--------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFEDLYYDTLQLIDMSATYREV 259 (280)
T ss_dssp TTCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCchh--------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9877654 4678999999999999999888765 677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 353 LFTIQDVMQSTVRAWLQDRSLTVTH 377 (497)
Q Consensus 353 l~~l~d~~~S~vs~~iN~rmN~VMK 377 (497)
++.++|+|+|.++ ++||++||
T Consensus 260 l~~l~d~~~s~is----~~~N~iMK 280 (280)
T 4egw_A 260 LTSMMDITLSLEN----IKMNQIMK 280 (280)
T ss_dssp HHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHH----HHHHHhhC
Confidence 9999999999988 88999997
No 4
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.93 E-value=2e-25 Score=218.30 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=148.3
Q ss_pred eccCCChhHHHHhhccccccccCCccccccccEEECC-EEEEEEeccccCCCCCCcccceEEEEEEEeCCEEEEEEecCC
Q 040491 157 NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAG-GLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKG 235 (497)
Q Consensus 157 ~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd-~lflvLr~~~~~d~~~~~~~itv~L~ifl~~n~LITv~~~~g 235 (497)
+. +|||++.+++.+. +||||+ +.|++ ++|++++++.+ +++..+++ +++++||+++++|||+|++
T Consensus 49 ~~-~l~~l~~ed~l~~------~~rpk~----e~~~d~~lfivl~~~~~-~~~~~~~~-~~~l~i~l~~~~lITvr~~-- 113 (252)
T 3ck6_A 49 DN-HVPRATVDHLLAD------ESRPSF----HPLDDDNFMLILRGINM-NENASPED-MLSIRILYFQGALISTRKI-- 113 (252)
T ss_dssp HT-TCCHHHHHHHHCS------SCCCEE----EECSTTCEEEEEEECCC-STTCCTTS-CEEEEEEEETTEEEEEESS--
T ss_pred Hc-CCCHHHHHHHhCC------CCCCce----EEeCCceEEEEEecCcc-CCCCCccc-EEEEEEEEeCCEEEEEeCC--
Confidence 66 9999999998876 789999 99999 99999999987 44333445 4999999999999999987
Q ss_pred CCCCCcchhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHH
Q 040491 236 STSNINVLGIMEVQELLAAGGSNIPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQ 315 (497)
Q Consensus 236 ~~~~~~~~~i~~vrerl~~~~~~~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~ 315 (497)
+...++.+++++.+++ .+.++.+++++|+|.++|.+.+ +++.+++++|+||++ . + ..+
T Consensus 114 -----~~~~~~~v~~~l~~~~--~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE~~-~-----~--------~~~ 171 (252)
T 3ck6_A 114 -----PSRAIMEIRQALAEHK--GPKSLASLLNQIIEGLNGKIDL-YLDTIEETLNEFDVN-D-----E--------STY 171 (252)
T ss_dssp -----CCHHHHHHHHHHHTTC--SCSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTCCTT-C-----G--------GGC
T ss_pred -----CcchHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC-c-----h--------HHH
Confidence 7899999999998876 5678999999999999999666 999999999999987 1 1 134
Q ss_pred HHHHHHHHHHHHHHhhcccchh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 316 EIRRLSTQVIRVKWSLHARDEI------------------------STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDR 371 (497)
Q Consensus 316 ~I~~LRr~li~LRR~l~p~rEi------------------------~l~rllEdleslre~l~~l~d~~~S~vs~~iN~r 371 (497)
+|+.+||+++.+||.+.|++++ |+.++.+++++++|+++.++|.++|.++ ++
T Consensus 172 ~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~~~~~~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s----~~ 247 (252)
T 3ck6_A 172 NHIAAQKALISIKRFIRPQQYAIRDLIESESELVTSRPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRD----EK 247 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 5777788888777777666543 7889999999999999999999999998 88
Q ss_pred HHHHH
Q 040491 372 SLTVT 376 (497)
Q Consensus 372 mN~VM 376 (497)
||++|
T Consensus 248 ~N~~m 252 (252)
T 3ck6_A 248 TNKNS 252 (252)
T ss_dssp -----
T ss_pred HccCC
Confidence 88776
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.93 E-value=4.1e-25 Score=217.29 Aligned_cols=178 Identities=15% Similarity=0.199 Sum_probs=144.7
Q ss_pred eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEEEEEEEeCCEEEEEEecCCC
Q 040491 157 NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKGS 236 (497)
Q Consensus 157 ~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~L~ifl~~n~LITv~~~~g~ 236 (497)
+.++|||++.+++.+. +||||+ |.|++++|++++.+.. +++....+ +.+++||+++++|||||++
T Consensus 60 ~~~~l~~l~~ed~~~~------~~rpk~----e~~~~~~fivl~~~~~-~~~~~~~~-~~~v~~~l~~~~lITv~~~--- 124 (264)
T 3nvo_A 60 STPLLPNNVRDALAGE------SSRPRV----SRMGEGTLITLRCING-STDERPDQ-LVAMRLYMDERFIVSTRQR--- 124 (264)
T ss_dssp HCTTSCTTTHHHHTTC------CCSCEE----EEETTEEEEEEECC------------CCEEEEEECSSEEEEEESS---
T ss_pred hccCCCHHHHHHHhCC------CCCCce----EEECCEEEEEEEeccc-CCCCCCcc-eEEEEEEEeCCEEEEEecC---
Confidence 7799999988888875 689999 9999999999999877 43333344 4899999999999999987
Q ss_pred CCCCcchhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHH
Q 040491 237 TSNINVLGIMEVQELLAAGGSNIPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQE 316 (497)
Q Consensus 237 ~~~~~~~~i~~vrerl~~~~~~~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~~ 316 (497)
+...++.+++++.+++ .+.++.+++++|+|.++|.+.+ +++.+++++++||++++.+ .++ ..++
T Consensus 125 ----~~~~~~~v~~rl~~~~--~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE~~l~~~-~~~--------~l~~ 188 (264)
T 3nvo_A 125 ----KVLALDDVVSDLQEGT--GPVDCGGWLVDVCDALTDHASE-FIEELHDKIIDLEDNLLDQ-QIP--------PRGF 188 (264)
T ss_dssp ----CCHHHHHHHHHHHTTC--SCSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTC-----CCC--------CTTH
T ss_pred ----CcCcHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC-Cch--------hHHH
Confidence 6899999999999876 4578999999999999999666 9999999999999999977 443 2467
Q ss_pred HHHHHHHHHHHHHhhcccchh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 317 IRRLSTQVIRVKWSLHARDEI-------------------------STREMIEEQEAVRGRLFTIQDVMQSTVR 365 (497)
Q Consensus 317 I~~LRr~li~LRR~l~p~rEi-------------------------~l~rllEdleslre~l~~l~d~~~S~vs 365 (497)
|+.+||+++.+||.+.|++++ |+.++.+.++.++|+++.++|.+++.++
T Consensus 189 l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~Dv~d~~~~~~e~~~~~re~l~~l~d~~~s~~~ 262 (264)
T 3nvo_A 189 LALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQ 262 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999998888765 7788889999999999999997777654
No 6
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.84 E-value=1.9e-20 Score=184.39 Aligned_cols=165 Identities=13% Similarity=0.034 Sum_probs=130.4
Q ss_pred ccccCCCcc-ce-----e-eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEE
Q 040491 145 PYWERPVGP-TW-----C-NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIV 217 (497)
Q Consensus 145 ~~w~~~~~~-~W-----l-~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~ 217 (497)
..|.+..+| ++ + +.++|||++.+++.+. +||||+ |.|++++|++++.+.+ +++..... +.+
T Consensus 62 ~~Wi~l~~p~~~~e~~~l~~~f~l~~l~~ed~l~~------~~rpk~----e~~~d~lfivl~~~~~-~~~~~~~~-~~~ 129 (269)
T 2bbh_A 62 PTWINITGIHRTDVVQRVGEFFGTHPLVLEDILNV------HQRPKV----EFFENYVFIVLKMFTY-DKNLHELE-SEQ 129 (269)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHTCCHHHHHHHHCT------TCCCEE----EECSSEEEEEEEEEEC-CC--CCCE-EEE
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCHhHHHHHhCc------CCCceE----EEECCEEEEEEEeeee-cCCcCcee-EEE
Confidence 467666555 44 2 7789999999998876 689999 9999999999999876 33222223 588
Q ss_pred EEEEEeCCEEEEEEecCCCCCCCcchhHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 040491 218 LRSWQAQKNLLTALHVKGSTSNINVLGIMEVQELLAAGGSN-IPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELK 296 (497)
Q Consensus 218 L~ifl~~n~LITv~~~~g~~~~~~~~~i~~vrerl~~~~~~-~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~ 296 (497)
++||+++++|||+|++ +...++.+++++.+++.. ...++.+++|+|+|.++|.+.+ +++.+++++|+||++
T Consensus 130 v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~i~~~id~lE~~ 201 (269)
T 2bbh_A 130 VSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFV-LLEKIDDEIDVLEEE 201 (269)
T ss_dssp EEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTGGGSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
T ss_pred EEEEEECCEEEEEECC-------CCCcHHHHHHHHHhcCCchhhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999987 678899999999886311 2367788999999999999665 999999999999999
Q ss_pred hcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 040491 297 FMNRRTHEDMHLVGIILNQEIRRLSTQVIRVKWSLHARDEI 337 (497)
Q Consensus 297 v~~~~~~e~~~lL~~~l~~~I~~LRr~li~LRR~l~p~rEi 337 (497)
++.++.++ ..++|+.+|++++.+||.+.|++++
T Consensus 202 v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~v 234 (269)
T 2bbh_A 202 VLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREV 234 (269)
T ss_dssp C---------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876543 3578999999999999999999874
No 7
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.81 E-value=1.5e-19 Score=178.06 Aligned_cols=161 Identities=11% Similarity=0.032 Sum_probs=133.4
Q ss_pred ccccCCCcc-ce-----e-eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEE
Q 040491 145 PYWERPVGP-TW-----C-NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIV 217 (497)
Q Consensus 145 ~~w~~~~~~-~W-----l-~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~ 217 (497)
..|.+..+| ++ + +.++|||++.+++.+. +||||+ |.|++++|++++.+.. ++ . .. +.+
T Consensus 67 ~~Wi~l~~p~~~~e~~~l~~~f~l~~l~~ed~l~~------~~rpk~----e~~~d~lfivl~~~~~-~~--~-~~-~~~ 131 (266)
T 2hn1_A 67 KLWIDVVGVHDESLIAKICEFLGIHPLAAEDILNT------AQRVKI----EDYDDHLFLVLKILLY-NE--T-LE-IDQ 131 (266)
T ss_dssp EEEEEECCCCCHHHHHHHHHTTTCCHHHHHHHHBT------TCCSEE----EECSSEEEEEEEEEEE-SS--S-EE-EEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHcCCCHhHHHHHhCC------CCCCeE----EEECCEEEEEEEeccc-cC--c-cc-eEE
Confidence 356665555 43 2 7799999999998876 689999 9999999999999876 33 2 23 588
Q ss_pred EEEEEeCCEEEEEEecCCCCCCCcchhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 040491 218 LRSWQAQKNLLTALHVKGSTSNINVLGIMEVQELLAAGGSNIPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKF 297 (497)
Q Consensus 218 L~ifl~~n~LITv~~~~g~~~~~~~~~i~~vrerl~~~~~~~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v 297 (497)
++||+++++|||+|++ +...++.+++++.+++.....++.+++++|+|.++|.+.+ +++.+++++|+||+++
T Consensus 132 v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~i~~~id~lE~~l 203 (266)
T 2hn1_A 132 LSLVLKKNLVATFEER-------EYWILDSIRSRLKSGGRMRKLAGDYLAYTILDAVVDSYFE-ALLKISDEIEVLEDEV 203 (266)
T ss_dssp EEEEEETTEEEEEESS-------SSCSTHHHHHHHHSSSHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEcC-------CCChHHHHHHHHHhCCchhhcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999987 6788999999998763111267888999999999999665 9999999999999999
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 040491 298 MNRRTHEDMHLVGIILNQEIRRLSTQVIRVKWSLHARDEI 337 (497)
Q Consensus 298 ~~~~~~e~~~lL~~~l~~~I~~LRr~li~LRR~l~p~rEi 337 (497)
+.++. + ..++|+.+|++++.+||.+.|++++
T Consensus 204 ~~~~~-~--------~l~~l~~lrr~l~~lrr~l~p~~~v 234 (266)
T 2hn1_A 204 VSGDS-T--------LIGKIHSLKREILAFRNAVWPLRDV 234 (266)
T ss_dssp HTTTC-C--------CCCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hcCcH-H--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98765 4 2467999999999999999998874
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=80.47 E-value=47 Score=33.01 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 040491 354 FTIQDVMQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGLFGI 398 (497)
Q Consensus 354 ~~l~d~~~S~vs~~iN~rmN~VMKvLTIiSaIflPLTfItGiYGM 398 (497)
..+.+...++++..++...|+.=+++-++|++-+...-.|=+-|.
T Consensus 254 ~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGi 298 (339)
T 4ev6_A 254 ATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGI 298 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333334444444444444444444444444444444444443
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=63.39 E-value=1.3e+02 Score=30.19 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 040491 353 LFTIQDVMQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGLFGI 398 (497)
Q Consensus 353 l~~l~d~~~S~vs~~iN~rmN~VMKvLTIiSaIflPLTfItGiYGM 398 (497)
+..+.|...++++..++...|+.=.++-++|++-+...-.|=+-|.
T Consensus 277 ~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGi 322 (363)
T 2iub_A 277 VETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGI 322 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444445555555555555555555555555555554
No 10
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=36.03 E-value=37 Score=32.57 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=13.2
Q ss_pred CCchHHHHHHHH--HHHHHHHHHHHHHHhhccCCc
Q 040491 409 SPYAFALFSGIL--FLLGVVLIAIGLLYLGLKKPI 441 (497)
Q Consensus 409 ~pyGF~i~l~iM--lliav~l~~~~l~~~~~k~~~ 441 (497)
.+||..++...+ ..+.++-+.+|++.-.+....
T Consensus 209 ~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 209 YPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355543333333 333333344566665665533
No 11
>2qij_C Core antigen; viral capsid protein, icosahedral virus; 8.90A {Hepatitis b virus subtype adyw}
Probab=34.66 E-value=9.5 Score=34.03 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=11.0
Q ss_pred HHHHHhhhccCCCCCCCCCCCCchH
Q 040491 389 LSIITGLFGINVDGIPGARGSPYAF 413 (497)
Q Consensus 389 LTfItGiYGMNF~~MPel~~~pyGF 413 (497)
+|+||++|||+.+-.++.+ .++-+
T Consensus 1 ~~~~~WLWGMDIDPYKEFg-AsvEL 24 (157)
T 2qij_C 1 MTMITDSLEFHIDPYKEFG-ATVEL 24 (157)
T ss_dssp ---------CCCCTTGGGT-CCHHH
T ss_pred CceeeeecccccCcccccc-chHHH
Confidence 4889999999999888877 45443
No 12
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=32.92 E-value=1.1e+02 Score=26.40 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=28.3
Q ss_pred HHHHHHH-HHHhhhccCCC-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 040491 384 GCGLILS-IITGLFGINVD-GIPGARGSPYAFALFSGILFLLGVVLIAIGLLY 434 (497)
Q Consensus 384 aIflPLT-fItGiYGMNF~-~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~ 434 (497)
-|++||- +++| |.||. ++-... ..||-++-.++-+++.+..+++.+..
T Consensus 57 dIImPlIg~l~g--g~df~~~l~~~~-i~yG~Fi~avInFlIiA~viF~~vk~ 106 (114)
T 3hzq_A 57 NIIMPLIGKIFG--SVDFAKEWSFWG-IKYGLFIQSVIDFIIIAFALFIFVKI 106 (114)
T ss_dssp HTHHHHHHHSSS--CSCCCTTCCCSS-CCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCcccCeeeee-eeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556652 2223 67888 554445 67898887777666655555444433
No 13
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=32.49 E-value=46 Score=30.77 Aligned_cols=44 Identities=14% Similarity=-0.066 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCC--------CCCCCCchHHHHHHHHHHHHHHHH
Q 040491 382 FGGCGLILSIITGLFGINVDGIP--------GARGSPYAFALFSGILFLLGVVLI 428 (497)
Q Consensus 382 iSaIflPLTfItGiYGMNF~~MP--------el~~~pyGF~i~l~iMlliav~l~ 428 (497)
+.-|++|+--+. =|.||.++- ... ..||-++-.++-++|.+..+
T Consensus 58 V~dIImPlIgl~--Gg~dfs~l~~~l~~~~~~~~-i~yG~Fi~avInFlIIA~vI 109 (174)
T 2oar_A 58 TDSIITPLINRI--GVNAQSDVGILRIGIGGGQT-IDLNVLLSAAINFFLIAFAV 109 (174)
T ss_dssp HHHHHHHHHHHH--CCCCEEECCCCTTTCCSCEE-ECHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHhh--CCCCcccceEEEecCCCcee-eeHHHHHHHHHHHHHHHHHH
Confidence 445677763332 367887542 112 47887777777665544444
No 14
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=31.91 E-value=9.2 Score=24.58 Aligned_cols=11 Identities=45% Similarity=0.999 Sum_probs=7.2
Q ss_pred chhhHHHHHHH
Q 040491 106 GWDRISQLVQS 116 (497)
Q Consensus 106 ~~~~~~~~~~~ 116 (497)
.|+||+||-|+
T Consensus 18 dw~riaelq~r 28 (28)
T 3ro2_B 18 DWNRIAELQQR 28 (28)
T ss_dssp CTTTGGGC---
T ss_pred hHHHHHHHhcC
Confidence 59999998764
No 15
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=28.54 E-value=3.3e+02 Score=24.60 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 040491 338 STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGAR 407 (497)
Q Consensus 338 ~l~rllEdleslre~l~~l~d~~~S~vs~~iN~rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~ 407 (497)
....+.++++...+++......|...+. ..|..+ --.|-.+|+|+||+ ..+|.++
T Consensus 104 ~f~~Lq~eL~~~EnrIa~ARr~YN~aV~-----~yN~~i--------~~FP~~ivA~l~gf--~~~~~f~ 158 (171)
T 2etd_A 104 NFRQLMDELAGTENRIAVARRDYNEAVX-----XYNTAI--------XXFPGVIFAXMFGF--EEXQYFE 158 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--------CC----------CC--CCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccc--------ccCcHHHHHHHhCC--CCCchhh
Confidence 4667788888888888888888888775 233311 12699999999986 4456554
No 16
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=24.92 E-value=15 Score=35.71 Aligned_cols=41 Identities=20% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCc---chhhhhhhHHhHHHHHHHHHHHHHHHHhh
Q 040491 428 IAIGLLYLGLKKPI---LDEHVEVRKLELEGLVKMFEQEAESHAQV 470 (497)
Q Consensus 428 ~~~~l~~~~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (497)
+++|.+||.+|.|- +-|+.+.-+ =++=++|.|+.+.++++|
T Consensus 230 f~~ga~~wk~k~~~~~~~~e~iq~~~--e~ne~smlq~~~~e~~~v 273 (273)
T 1scf_A 230 FAFGALYWKKRQPSLTRAVENIQINE--EDNEISMLQEKEREFQEV 273 (273)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHhhcccCCccchhhhhccccc--chhHHHHHHHhhhhhccC
Confidence 45788898888743 344444442 255678888887777664
No 17
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.56 E-value=1.5e+02 Score=23.70 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=5.4
Q ss_pred HHhHHHHHHHHH
Q 040491 450 KLELEGLVKMFE 461 (497)
Q Consensus 450 ~~~~~~~~~~~~ 461 (497)
|-|+..|++..|
T Consensus 41 rrE~~kFEkE~~ 52 (79)
T 2knc_B 41 RKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 18
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=22.43 E-value=71 Score=27.16 Aligned_cols=31 Identities=3% Similarity=0.092 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 344 EEQEAVRGRLFTIQDVMQSTVRAWLQDRSLT 374 (497)
Q Consensus 344 Edleslre~l~~l~d~~~S~vs~~iN~rmN~ 374 (497)
++.+.+.|++......-...+.....++|..
T Consensus 67 ~d~E~LedlI~aA~ndA~~ka~~~~~e~m~~ 97 (112)
T 1j8b_A 67 DDKEMLEDLIAAAFNDAVRRAEELQKEKMAS 97 (112)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677776666554444444444333344444
No 19
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=20.88 E-value=4.3e+02 Score=25.56 Aligned_cols=56 Identities=21% Similarity=0.127 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHh-----------hhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 040491 378 NLGVFGGCGLILSIITG-----------LFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYL 435 (497)
Q Consensus 378 vLTIiSaIflPLTfItG-----------iYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~ 435 (497)
+||+.+.+++..-++.- .=|=+++++-|++ +|..=|+++++.+.|..++++ .++|-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~dgi~e~~-nplp~ww~~~f~~~iv~~~~y-~~~yp 77 (311)
T 3mk7_C 11 LLTLGTIVALFWLIFATRKGESAGTTDQTMGHAFDGIEEYD-NPLPRWWFLLFIGTLVFGILY-LVLYP 77 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSSCCCCCCSCCBTTBCBCC-CCCCHHHHHHHHHHHHHHHHH-HHHST
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccChhhcc-CCCChHHHHHHHHHHHHHHHH-HHHHh
Confidence 46666666665544332 2344567788888 677666665555555443333 33455
No 20
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=20.11 E-value=47 Score=33.13 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=10.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHh
Q 040491 448 VRKLELEGLVKMFEQEAESHAQ 469 (497)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~ 469 (497)
.|...|+|..++|+.+..+++|
T Consensus 466 Tkg~tLeei~~~f~~~~~~~~~ 487 (491)
T 4gc0_A 466 TKGKTLEELEALWEPETKKTQQ 487 (491)
T ss_dssp CTTCCHHHHGGGTC--------
T ss_pred CCCCCHHHHHHHhCCCCccccc
Confidence 4445678888899766544433
Done!