Query 040492
Match_columns 77
No_of_seqs 101 out of 144
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 14:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nud_C RIN4, RPM1-interacting 99.8 1.1E-22 3.7E-27 114.6 0.3 34 3-36 2-35 (35)
2 2ys2_A Cytoplasmic tyrosine-pr 29.1 13 0.00046 21.3 0.3 10 63-72 22-31 (50)
3 2lk0_A RNA-binding protein 5; 27.6 12 0.0004 19.2 -0.1 9 9-17 1-9 (32)
4 2eef_A Protein phosphatase 1, 27.0 18 0.0006 24.7 0.6 17 14-33 125-141 (156)
5 1ac0_A Glucoamylase; hydrolase 26.4 25 0.00087 21.4 1.2 12 7-18 28-39 (108)
6 2k5k_A Uncharacterized protein 21.6 40 0.0014 20.8 1.5 11 10-20 49-59 (70)
7 2e6i_A Tyrosine-protein kinase 20.5 25 0.00087 21.0 0.4 10 62-71 21-30 (64)
8 3sbu_A Hypothetical NTF2-like 19.4 29 0.00099 26.1 0.5 22 23-44 89-110 (261)
9 4dkx_A RAS-related protein RAB 16.5 43 0.0015 22.4 0.8 13 22-34 160-172 (216)
10 1mkc_A Protein (midkine); hepa 15.7 53 0.0018 18.5 0.9 12 10-21 4-15 (43)
No 1
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=99.84 E-value=1.1e-22 Score=114.60 Aligned_cols=34 Identities=59% Similarity=1.084 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceehhHHHHhhh
Q 040492 3 EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEK 36 (77)
Q Consensus 3 ~~~~~vPKFG~WD~~~pas~~~yTviF~kar~~K 36 (77)
+++++|||||+||++||+++++|||||+|||++|
T Consensus 2 ~~~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K 35 (35)
T 2nud_C 2 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35 (35)
T ss_dssp -------CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred CCCCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence 5788999999999999999999999999999997
No 2
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=29.08 E-value=13 Score=21.26 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=8.4
Q ss_pred CcceeeeecC
Q 040492 63 SKKWFCCMQA 72 (77)
Q Consensus 63 ~kKwfCc~~~ 72 (77)
..+|.||.+.
T Consensus 22 ~g~W~CC~q~ 31 (50)
T 2ys2_A 22 DGKFLCCQQS 31 (50)
T ss_dssp TTEESSSCCS
T ss_pred CCeECCCCCC
Confidence 6899999873
No 3
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=27.55 E-value=12 Score=19.20 Aligned_cols=9 Identities=44% Similarity=1.007 Sum_probs=6.1
Q ss_pred CCCCCCCCC
Q 040492 9 PKFGEWDVN 17 (77)
Q Consensus 9 PKFG~WD~~ 17 (77)
||-|||.=.
T Consensus 1 pk~gDW~C~ 9 (32)
T 2lk0_A 1 XKFEDWLCN 9 (32)
T ss_dssp -CCSEEECT
T ss_pred CCCCCCCcC
Confidence 678888764
No 4
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.01 E-value=18 Score=24.74 Aligned_cols=17 Identities=24% Similarity=0.681 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCceehhHHHH
Q 040492 14 WDVNDPASAEGFTVIFNKAR 33 (77)
Q Consensus 14 WD~~~pas~~~yTviF~kar 33 (77)
||.|+ +.+|++.|.+.+
T Consensus 125 WDNN~---G~NY~v~~~~~~ 141 (156)
T 2eef_A 125 WDSNR---GKNYRIIRAELK 141 (156)
T ss_dssp EESGG---GSCCCEEETTTS
T ss_pred ecCCC---CeeEEEEEEEec
Confidence 99988 799999998654
No 5
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=26.35 E-value=25 Score=21.38 Aligned_cols=12 Identities=25% Similarity=1.080 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCC
Q 040492 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
..|.||+||...
T Consensus 28 s~~~LG~W~~~~ 39 (108)
T 1ac0_A 28 SISQLGDWETSD 39 (108)
T ss_dssp SSSTTCSSSGGG
T ss_pred CcHHHCCCCHHH
Confidence 679999999753
No 6
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=21.62 E-value=40 Score=20.77 Aligned_cols=11 Identities=36% Similarity=1.057 Sum_probs=8.7
Q ss_pred CCCCCCCCCCC
Q 040492 10 KFGEWDVNDPA 20 (77)
Q Consensus 10 KFG~WD~~~pa 20 (77)
.||||+.+.-+
T Consensus 49 RYGDWE~kG~a 59 (70)
T 2k5k_A 49 RFGDWEKKGIA 59 (70)
T ss_dssp SCCCCCCCSTT
T ss_pred ccccchhccee
Confidence 69999998643
No 7
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.54 E-value=25 Score=21.04 Aligned_cols=10 Identities=50% Similarity=1.228 Sum_probs=8.4
Q ss_pred CCcceeeeec
Q 040492 62 QSKKWFCCMQ 71 (77)
Q Consensus 62 ~~kKwfCc~~ 71 (77)
...+|.||.+
T Consensus 21 ~~GkW~CC~q 30 (64)
T 2e6i_A 21 MDGKWRCCSQ 30 (64)
T ss_dssp CSSSBSSSCC
T ss_pred eCCeECCCCC
Confidence 4689999987
No 8
>3sbu_A Hypothetical NTF2-like protein; cystatin-like, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; HET: MLY; 2.15A {Bacteroides fragilis}
Probab=19.42 E-value=29 Score=26.13 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=18.0
Q ss_pred CCceehhHHHHhhhhcCCCCCC
Q 040492 23 EGFTVIFNKARNEKKTGGKPDS 44 (77)
Q Consensus 23 ~~yTviF~kar~~Kk~~~~~~~ 44 (77)
.=||+||++..+++-..-+.+.
T Consensus 89 ~yYTliFD~e~qM~~~KdT~l~ 110 (261)
T 3sbu_A 89 SYYTLLFDREEDMDLVGDTSLT 110 (261)
T ss_dssp SEEEEEESSGGGGGGGGCTTCS
T ss_pred ceEEEEEcCHHHhhhhcCCccc
Confidence 4589999999999988776653
No 9
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=16.50 E-value=43 Score=22.43 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=7.7
Q ss_pred CCCceehhHHHHh
Q 040492 22 AEGFTVIFNKARN 34 (77)
Q Consensus 22 ~~~yTviF~kar~ 34 (77)
+.+-.-+|+.+-+
T Consensus 160 g~nV~e~F~~i~~ 172 (216)
T 4dkx_A 160 GYNVKQLFRRVAA 172 (216)
T ss_dssp TBSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 4555566777644
No 10
>1mkc_A Protein (midkine); heparin-binding growth factor; NMR {Synthetic} SCOP: g.5.1.2
Probab=15.71 E-value=53 Score=18.48 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 040492 10 KFGEWDVNDPAS 21 (77)
Q Consensus 10 KFG~WD~~~pas 21 (77)
+||.|.+=|++.
T Consensus 4 ~~~~W~eCD~~T 15 (43)
T 1mkc_A 4 KFENWGACDGGT 15 (43)
T ss_dssp EECCCCSSCSSS
T ss_pred cccccccccCCC
Confidence 589999887654
Done!