Query 040492
Match_columns 77
No_of_seqs 101 out of 144
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 14:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040492.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040492hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g26a_ g.3.16.1 (A:) N-termin 31.5 8.7 0.00063 19.2 1.1 9 62-70 20-28 (31)
2 d2ox7a1 b.172.1.1 (A:3-145) Hy 29.7 4.3 0.00031 24.2 -0.4 11 8-18 2-12 (143)
3 d1vema1 b.3.1.1 (A:418-516) be 26.8 10 0.00074 21.8 1.0 12 7-18 25-36 (99)
4 d2p84a1 b.172.1.1 (A:3-135) Or 25.2 5.8 0.00042 24.3 -0.4 10 8-17 2-11 (133)
5 d1kula_ b.3.1.1 (A:) Glucoamyl 23.1 13 0.00095 21.4 1.0 12 7-18 28-39 (108)
6 d1mkca_ g.5.1.2 (A:) Midkine, 22.7 14 0.001 19.7 0.9 13 10-22 4-16 (43)
7 d3bmva2 b.3.1.1 (A:579-683) Cy 21.9 9.8 0.00071 22.0 0.2 12 7-18 28-39 (105)
8 d1qhoa2 b.3.1.1 (A:577-686) Cy 19.3 16 0.0011 21.1 0.7 12 7-18 29-40 (110)
9 d1cyga2 b.3.1.1 (A:575-680) Cy 17.1 14 0.001 21.2 0.1 12 7-18 28-39 (106)
10 d1ufia_ a.30.4.1 (A:) Dimerisa 16.5 10 0.00075 20.4 -0.6 8 6-13 2-9 (48)
No 1
>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.53 E-value=8.7 Score=19.23 Aligned_cols=9 Identities=44% Similarity=1.113 Sum_probs=7.3
Q ss_pred CCcceeeee
Q 040492 62 QSKKWFCCM 70 (77)
Q Consensus 62 ~~kKwfCc~ 70 (77)
++-+|.||-
T Consensus 20 ~sGaWgCCP 28 (31)
T d1g26a_ 20 PSGAWGCCP 28 (31)
T ss_dssp TTSCEEEEE
T ss_pred cCCceeecc
Confidence 468999994
No 2
>d2ox7a1 b.172.1.1 (A:3-145) Hypothetical protein EF1440 {Enterococcus faecalis [TaxId: 1351]}
Probab=29.65 E-value=4.3 Score=24.25 Aligned_cols=11 Identities=45% Similarity=1.205 Sum_probs=9.3
Q ss_pred CCCCCCCCCCC
Q 040492 8 LPKFGEWDVND 18 (77)
Q Consensus 8 vPKFG~WD~~~ 18 (77)
+|||-.||...
T Consensus 2 ipKFRaWdk~~ 12 (143)
T d2ox7a1 2 IPKFRAWDTYE 12 (143)
T ss_dssp CCCEEEEETTT
T ss_pred CcEEEEEECCC
Confidence 69999999764
No 3
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}
Probab=26.78 E-value=10 Score=21.83 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCC
Q 040492 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
..|.+|+||.+.
T Consensus 25 s~~eLG~W~~~k 36 (99)
T d1vema1 25 NRAELGSWDTKQ 36 (99)
T ss_dssp SSGGGTTTCSSS
T ss_pred CcHHHCCCChhh
Confidence 579999999765
No 4
>d2p84a1 b.172.1.1 (A:3-135) Orf041 product {Staphylococcus phage 37 [TaxId: 320840]}
Probab=25.23 E-value=5.8 Score=24.27 Aligned_cols=10 Identities=50% Similarity=1.012 Sum_probs=8.6
Q ss_pred CCCCCCCCCC
Q 040492 8 LPKFGEWDVN 17 (77)
Q Consensus 8 vPKFG~WD~~ 17 (77)
+|||-.||..
T Consensus 2 iPKFRaWDk~ 11 (133)
T d2p84a1 2 IPKFREFDRE 11 (133)
T ss_dssp CCCEEEECHH
T ss_pred CCeEEEEECC
Confidence 6999999964
No 5
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}
Probab=23.06 E-value=13 Score=21.37 Aligned_cols=12 Identities=25% Similarity=1.080 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCC
Q 040492 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
..|.+|+||.+.
T Consensus 28 s~~~LG~W~~~~ 39 (108)
T d1kula_ 28 SISQLGDWETSD 39 (108)
T ss_dssp SSGGGTTTCTTT
T ss_pred ChHHhCCCCHHH
Confidence 679999999764
No 6
>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor, C-terminal domain {Synthetic}
Probab=22.70 E-value=14 Score=19.65 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 040492 10 KFGEWDVNDPASA 22 (77)
Q Consensus 10 KFG~WD~~~pas~ 22 (77)
||+.|-+=|++++
T Consensus 4 kF~~WG~CD~~Tg 16 (43)
T d1mkca_ 4 KFENWGACDGGTG 16 (43)
T ss_dssp EECCCCSSCSSSS
T ss_pred cccccccccccCC
Confidence 7999998886653
No 7
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Probab=21.91 E-value=9.8 Score=22.04 Aligned_cols=12 Identities=25% Similarity=0.894 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 040492 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
..|.+|+||..+
T Consensus 28 s~~~LG~W~~~~ 39 (105)
T d3bmva2 28 NVAELGNWDTSK 39 (105)
T ss_dssp SSGGGTTTCGGG
T ss_pred CcHHHCCCCHHH
Confidence 579999999754
No 8
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}
Probab=19.29 E-value=16 Score=21.13 Aligned_cols=12 Identities=25% Similarity=1.030 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCC
Q 040492 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
..|.+|+||..+
T Consensus 29 ~~~~LG~W~~~~ 40 (110)
T d1qhoa2 29 NIPELGNWSTDT 40 (110)
T ss_dssp SSGGGTTTCCCC
T ss_pred CcHHHCCCChhh
Confidence 578999999864
No 9
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.08 E-value=14 Score=21.19 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCC
Q 040492 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
..|.+|+||.+.
T Consensus 28 s~~~LG~W~~~~ 39 (106)
T d1cyga2 28 NVYELGNWDTSK 39 (106)
T ss_dssp SSGGGBTTCGGG
T ss_pred CHHHHCCCCHHH
Confidence 568999999764
No 10
>d1ufia_ a.30.4.1 (A:) Dimerisation domain of CENP-B {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.47 E-value=10 Score=20.40 Aligned_cols=8 Identities=63% Similarity=1.281 Sum_probs=5.9
Q ss_pred CCCCCCCC
Q 040492 6 GPLPKFGE 13 (77)
Q Consensus 6 ~~vPKFG~ 13 (77)
++||-||+
T Consensus 2 ~pvpsfge 9 (48)
T d1ufia_ 2 MPVPSFGE 9 (48)
T ss_dssp CCCCCHHH
T ss_pred CCCccHHH
Confidence 47888885
Done!