Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>040493
MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQ
QADAENNEK

High Scoring Gene Products

No gene products matching your query constraints were returned by the BLAST search.

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040493
        (69 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:4515103733 - symbol:AT5G55125 species:3702 "Ar...   301  9.4e-27   1


>TAIR|locus:4515103733 [details] [associations]
            symbol:AT5G55125 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA] [GO:0006412 "translation" evidence=IEA]
            InterPro:IPR002150 Pfam:PF01197 EMBL:CP002688 GO:GO:0006412
            GO:GO:0005840 GO:GO:0003735 UniGene:At.24643 UniGene:At.48080
            EMBL:DQ487619 IPI:IPI00891815 RefSeq:NP_001119440.1
            RefSeq:NP_001119441.1 ProteinModelPortal:Q1G3G5 PRIDE:Q1G3G5
            EnsemblPlants:AT5G55125.1 EnsemblPlants:AT5G55125.2 GeneID:6241018
            KEGG:ath:AT5G55125 TAIR:At5g55125 OMA:LINIMMT PhylomeDB:Q1G3G5
            ProtClustDB:CLSN2708558 Genevestigator:Q1G3G5 Uniprot:Q1G3G5
        Length = 76

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 58/72 (80%), Positives = 67/72 (93%)

Query:     1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRY-E 59
             MKKGLHPQMQWISYVTQSGRLMHVMMT+IH+VGKVYHF A+RQMAQSIGQ+AKF+RR+ E
Sbjct:     1 MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRFNE 60

Query:    60 QQADA--ENNEK 69
             Q+A+A  ENN +
Sbjct:    61 QEAEAAEENNNE 72


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.130   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.38    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  509 (54 KB)
  Total size of DFA:  96 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.53u 0.10s 7.63t   Elapsed:  00:00:00
  Total cpu time:  7.53u 0.10s 7.63t   Elapsed:  00:00:00
  Start:  Fri May 10 22:03:35 2013   End:  Fri May 10 22:03:35 2013

Back to top