BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040493
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3R0G4|RL31_PHYMT 50S ribosomal protein L31 OS=Phytoplasma mali (strain AT) GN=rpmE
PE=3 SV=1
Length = 69
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQMAQSI-GQVAKF 54
MKK LHP ++ I V + + HV+ T + N+ + F +Q ++ G+V KF
Sbjct: 1 MKKKLHPILKKIPLVCATCKKQHVIDTTVENIHIEICANCHPFYVGKQNFTTVAGRVDKF 60
Query: 55 RRRYEQQA 62
+RY+ +
Sbjct: 61 NKRYQNKV 68
>sp|B5XZ32|RL31_KLEP3 50S ribosomal protein L31 OS=Klebsiella pneumoniae (strain 342)
GN=rpmE PE=3 SV=1
Length = 70
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQM-AQSIGQVAKF 54
MKKG+HP+ + I+ G +M + T H++ GK + F +Q + G+V +F
Sbjct: 1 MKKGIHPKYEEITATCSCGNVMKIRSTVGHDLNLDVCGKCHPFFTGKQRDVATGGRVDRF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|A6TGC6|RL31_KLEP7 50S ribosomal protein L31 OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpmE
PE=3 SV=1
Length = 70
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQM-AQSIGQVAKF 54
MKKG+HP I+ G +M + T H++ GK + F +Q + G+V +F
Sbjct: 1 MKKGIHPNYDEITATCSCGNVMKIRSTVGHDLNLDVCGKCHPFFTGKQRDVATGGRVDRF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|Q0VMB0|RL31_ALCBS 50S ribosomal protein L31 OS=Alcanivorax borkumensis (strain SK2
/ ATCC 700651 / DSM 11573) GN=rpmE PE=3 SV=1
Length = 72
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTK----IHNVGKVYH--FRARRQMAQSIGQVAKF 54
MK +HP Q +Y G ++ TK +V H + +++ A S GQ+ KF
Sbjct: 1 MKAEIHPDYQTATYTCSCGNVIETRSTKGGDMALDVCSACHPFYTGKQKQADSGGQIDKF 60
Query: 55 RRRY 58
++R+
Sbjct: 61 KQRF 64
>sp|B1LAZ7|RL31_THESQ 50S ribosomal protein L31 OS=Thermotoga sp. (strain RQ2) GN=rpmE
PE=3 SV=1
Length = 71
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHF-----RARRQMAQSIGQ 50
MKKG+HP+M+ ++ G H T + N+ K + F + + + G+
Sbjct: 1 MKKGIHPEMKLVTVKCACG-AEHTFYTTVDNIRIDVCSKCHPFYTSGGKGGVLIVDTEGR 59
Query: 51 VAKFRRRY 58
V KFRR+Y
Sbjct: 60 VEKFRRKY 67
>sp|B2S2K3|RL31_TREPS 50S ribosomal protein L31 OS=Treponema pallidum subsp. pallidum
(strain SS14) GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHN----VGKVYH--FRARRQMAQSIGQVAKF 54
MKKGLHP+ + V G ++ V + + + + H F ++++ S G++ +F
Sbjct: 1 MKKGLHPRYEETKVVCACGNVI-VTASTVKDLRVEICSACHPFFTGKQKLVDSAGRIDRF 59
Query: 55 RRRYE 59
RRY+
Sbjct: 60 NRRYK 64
>sp|O66075|RL31_TREPA 50S ribosomal protein L31 OS=Treponema pallidum (strain Nichols)
GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHN----VGKVYH--FRARRQMAQSIGQVAKF 54
MKKGLHP+ + V G ++ V + + + + H F ++++ S G++ +F
Sbjct: 1 MKKGLHPRYEETKVVCACGNVI-VTASTVKDLRVEICSACHPFFTGKQKLVDSAGRIDRF 59
Query: 55 RRRYE 59
RRY+
Sbjct: 60 NRRYK 64
>sp|P66185|RL31_HELPY 50S ribosomal protein L31 OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQ-MQWISYVTQSGRLMHVMMTKIH---NVGKVYH--FRARRQMAQSIGQVAKF 54
MKKG+HP+ + SG+ + V+ TK ++ H + ++A + G+V KF
Sbjct: 1 MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKF 60
Query: 55 RRRY 58
++RY
Sbjct: 61 KQRY 64
>sp|B2UTS9|RL31_HELPS 50S ribosomal protein L31 OS=Helicobacter pylori (strain Shi470)
GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQ-MQWISYVTQSGRLMHVMMTKIH---NVGKVYH--FRARRQMAQSIGQVAKF 54
MKKG+HP+ + SG+ + V+ TK ++ H + ++A + G+V KF
Sbjct: 1 MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKF 60
Query: 55 RRRY 58
++RY
Sbjct: 61 KQRY 64
>sp|P66186|RL31_HELPJ 50S ribosomal protein L31 OS=Helicobacter pylori (strain J99)
GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQ-MQWISYVTQSGRLMHVMMTKIH---NVGKVYH--FRARRQMAQSIGQVAKF 54
MKKG+HP+ + SG+ + V+ TK ++ H + ++A + G+V KF
Sbjct: 1 MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKF 60
Query: 55 RRRY 58
++RY
Sbjct: 61 KQRY 64
>sp|Q1CTX6|RL31_HELPH 50S ribosomal protein L31 OS=Helicobacter pylori (strain HPAG1)
GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQ-MQWISYVTQSGRLMHVMMTKIH---NVGKVYH--FRARRQMAQSIGQVAKF 54
MKKG+HP+ + SG+ + V+ TK ++ H + ++A + G+V KF
Sbjct: 1 MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKF 60
Query: 55 RRRY 58
++RY
Sbjct: 61 KQRY 64
>sp|B5Z6S4|RL31_HELPG 50S ribosomal protein L31 OS=Helicobacter pylori (strain G27)
GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQ-MQWISYVTQSGRLMHVMMTKIH---NVGKVYH--FRARRQMAQSIGQVAKF 54
MKKG+HP+ + SG+ + V+ TK ++ H + ++A + G+V KF
Sbjct: 1 MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKF 60
Query: 55 RRRY 58
++RY
Sbjct: 61 KQRY 64
>sp|B6JLD4|RL31_HELP2 50S ribosomal protein L31 OS=Helicobacter pylori (strain P12)
GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQ-MQWISYVTQSGRLMHVMMTKIH---NVGKVYH--FRARRQMAQSIGQVAKF 54
MKKG+HP+ + SG+ + V+ TK ++ H + ++A + G+V KF
Sbjct: 1 MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKF 60
Query: 55 RRRY 58
++RY
Sbjct: 61 KQRY 64
>sp|Q17XH0|RL31_HELAH 50S ribosomal protein L31 OS=Helicobacter acinonychis (strain
Sheeba) GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQ-MQWISYVTQSGRLMHVMMTKIH---NVGKVYH--FRARRQMAQSIGQVAKF 54
MKKG+HP+ + SG+ + V+ TK ++ H + ++A + G+V KF
Sbjct: 1 MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKF 60
Query: 55 RRRY 58
++RY
Sbjct: 61 KQRY 64
>sp|B8DZZ9|RL31_DICTD 50S ribosomal protein L31 OS=Dictyoglomus turgidum (strain Z-1310
/ DSM 6724) GN=rpmE PE=3 SV=1
Length = 68
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTK----IHNVGKVY-HFRARRQMAQSIGQVAKFR 55
MKKG+HP+++ V G + + TK + K + F +R+ + G+V +F
Sbjct: 1 MKKGIHPELKKAKIVCACGAVYETLSTKEYMTVEICSKCHPFFTGQRKFVDTEGRVERFT 60
Query: 56 RRY 58
++Y
Sbjct: 61 KKY 63
>sp|B8D897|RL31_BUCAT 50S ribosomal protein L31 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=rpmE PE=3 SV=1
Length = 72
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKK +HP+ I+ G ++ + T HN+ K + F +Q + + G+V +F
Sbjct: 1 MKKKIHPRYSKITATCSCGNIIEIFSTINHNINLDICAKCHPFYTGKQRVIDTGGRVERF 60
Query: 55 RRRYE 59
++R++
Sbjct: 61 KKRFK 65
>sp|Q65VF5|RL31_MANSM 50S ribosomal protein L31 OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=rpmE PE=3 SV=2
Length = 71
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MK+G+HP+ + I+ G ++ T H++ G + F +Q + + G+V +F
Sbjct: 1 MKQGIHPEYKEITVTCSCGNVIKTRSTAGHDINLDVCGNCHPFYTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|Q7MYC6|RL31_PHOLL 50S ribosomal protein L31 OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=rpmE PE=3 SV=1
Length = 71
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQM-AQSIGQVAKF 54
MKKG+HP+ + I+ G ++ V T H + G+ + F +Q + G+V +F
Sbjct: 1 MKKGIHPKYEEITATCSCGSVIQVRSTAGHALNLDVCGQCHPFYTGKQRDVATGGRVDRF 60
Query: 55 RRRY 58
++R+
Sbjct: 61 KKRF 64
>sp|B5YDA8|RL31_DICT6 50S ribosomal protein L31 OS=Dictyoglomus thermophilum (strain
ATCC 35947 / DSM 3960 / H-6-12) GN=rpmE PE=3 SV=1
Length = 68
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTK----IHNVGKVY-HFRARRQMAQSIGQVAKFR 55
MKKG+HP+++ V G + + TK + K + F +R+ + G+V +F
Sbjct: 1 MKKGIHPELKKARIVCACGAVYETLSTKEYMTVEICSKCHPFFTGQRKFVDTEGRVERFA 60
Query: 56 RRY 58
++Y
Sbjct: 61 KKY 63
>sp|Q3A127|RL31_PELCD 50S ribosomal protein L31 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rpmE PE=3 SV=1
Length = 69
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHN----VGKVYH--FRARRQMAQSIGQVAKF 54
MK+G+HP+ + + G ++ TK + V H + ++++ + G++ +F
Sbjct: 1 MKEGIHPKYEAVEVKCHCGNVIQTRSTKCADMQVEVCSACHPFYTGKQKLLDTAGRIDRF 60
Query: 55 RRRYEQQADAENNE 68
R++Y A+NN+
Sbjct: 61 RKKY-----AKNNK 69
>sp|P66191|RL31_SALTY 50S ribosomal protein L31 OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|P66192|RL31_SALTI 50S ribosomal protein L31 OS=Salmonella typhi GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|B4TPV7|RL31_SALSV 50S ribosomal protein L31 OS=Salmonella schwarzengrund (strain
CVM19633) GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|B5BJL3|RL31_SALPK 50S ribosomal protein L31 OS=Salmonella paratyphi A (strain
AKU_12601) GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|C0Q446|RL31_SALPC 50S ribosomal protein L31 OS=Salmonella paratyphi C (strain
RKS4594) GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|A9MZI7|RL31_SALPB 50S ribosomal protein L31 OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|Q5PK51|RL31_SALPA 50S ribosomal protein L31 OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|B4T0U3|RL31_SALNS 50S ribosomal protein L31 OS=Salmonella newport (strain SL254)
GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|B4TCN3|RL31_SALHS 50S ribosomal protein L31 OS=Salmonella heidelberg (strain SL476)
GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|B5RF75|RL31_SALG2 50S ribosomal protein L31 OS=Salmonella gallinarum (strain 287/91
/ NCTC 13346) GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|B5QXM5|RL31_SALEP 50S ribosomal protein L31 OS=Salmonella enteritidis PT4 (strain
P125109) GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|B5FPU5|RL31_SALDC 50S ribosomal protein L31 OS=Salmonella dublin (strain
CT_02021853) GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|Q57HC1|RL31_SALCH 50S ribosomal protein L31 OS=Salmonella choleraesuis (strain
SC-B67) GN=rpmE PE=3 SV=2
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|B5F0S7|RL31_SALA4 50S ribosomal protein L31 OS=Salmonella agona (strain SL483)
GN=rpmE PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKKG+HP I+ G ++ T H++ GK + F +Q + + G+V +F
Sbjct: 1 MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60
Query: 55 RRRYE 59
+R+
Sbjct: 61 NKRFS 65
>sp|P57639|RL31_BUCAI 50S ribosomal protein L31 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpmE PE=3 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKK +HP+ I+ G ++ + T HN+ K + F +Q + + G+V +F
Sbjct: 1 MKKKIHPRYSKITATCSCGNIIEIFSTINHNLNLDICAKCHPFYTGKQRVIDTGGRVERF 60
Query: 55 RRRYE 59
++R++
Sbjct: 61 KKRFK 65
>sp|B8D8E0|RL31_BUCA5 50S ribosomal protein L31 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=rpmE PE=3 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 54
MKK +HP+ I+ G ++ + T HN+ K + F +Q + + G+V +F
Sbjct: 1 MKKKIHPRYSKITATCSCGNIIEIFSTINHNLNLDICAKCHPFYTGKQRVIDTGGRVERF 60
Query: 55 RRRYE 59
++R++
Sbjct: 61 KKRFK 65
>sp|B5ENM4|RL31_ACIF5 50S ribosomal protein L31 OS=Acidithiobacillus ferrooxidans
(strain ATCC 53993) GN=rpmE PE=3 SV=1
Length = 68
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTK-----IHNVGKVYHFRARRQMAQSI-GQVAKF 54
MK +HP+ + I+ G + T I + + F +Q A S GQV KF
Sbjct: 1 MKSNIHPKYEEITVTCSCGNVFKTRSTANRDLHIDLCSECHPFYTGKQRAVSAAGQVEKF 60
Query: 55 RRRY 58
R+RY
Sbjct: 61 RKRY 64
>sp|B7J5V5|RL31_ACIF2 50S ribosomal protein L31 OS=Acidithiobacillus ferrooxidans
(strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpmE
PE=3 SV=1
Length = 68
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTK-----IHNVGKVYHFRARRQMAQSI-GQVAKF 54
MK +HP+ + I+ G + T I + + F +Q A S GQV KF
Sbjct: 1 MKSNIHPKYEEITVTCSCGNVFKTRSTANRDLHIDLCSECHPFYTGKQRAVSAAGQVEKF 60
Query: 55 RRRY 58
R+RY
Sbjct: 61 RKRY 64
>sp|A1RJC2|OPGH_SHESW Glucans biosynthesis glucosyltransferase H OS=Shewanella sp.
(strain W3-18-1) GN=opgH PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 24 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A4Y768|OPGH_SHEPC Glucans biosynthesis glucosyltransferase H OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=opgH PE=3
SV=1
Length = 727
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 24 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|Q8EF78|OPGH_SHEON Glucans biosynthesis glucosyltransferase H OS=Shewanella oneidensis
(strain MR-1) GN=opgH PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 24 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|Q0HUS0|OPGH_SHESR Glucans biosynthesis glucosyltransferase H OS=Shewanella sp.
(strain MR-7) GN=opgH PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 24 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|Q0HJ63|OPGH_SHESM Glucans biosynthesis glucosyltransferase H OS=Shewanella sp.
(strain MR-4) GN=opgH PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 24 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A0KWF0|OPGH_SHESA Glucans biosynthesis glucosyltransferase H OS=Shewanella sp.
(strain ANA-3) GN=opgH PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 24 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|Q7VRL2|RL31_BLOFL 50S ribosomal protein L31 OS=Blochmannia floridanus GN=rpmE PE=3
SV=1
Length = 73
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV 32
MKK +HPQ IS G ++HV T HN+
Sbjct: 1 MKKNIHPQYNVISASCSCGNVIHVRSTLKHNI 32
>sp|B8E7D2|OPGH_SHEB2 Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica
(strain OS223) GN=opgH PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 24 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A9KZ13|OPGH_SHEB9 Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica
(strain OS195) GN=opgH PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 24 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A6WMM7|OPGH_SHEB8 Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica
(strain OS185) GN=opgH PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 24 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A3D3U0|OPGH_SHEB5 Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=opgH PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 24 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|Q39YQ4|RL31_GEOMG 50S ribosomal protein L31 OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=rpmE PE=3 SV=1
Length = 66
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIH---NVGKVYH--FRARRQMAQSIGQVAKFR 55
MK+G+HP+ ++ G T+ + H F ++++ + G+V +FR
Sbjct: 1 MKEGIHPKYNEVTVKCACGNSFQTRSTRTEISTEICSACHPFFTGKQKLVDTAGRVERFR 60
Query: 56 RRYEQQ 61
++Y Q
Sbjct: 61 KKYGMQ 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,344,845
Number of Sequences: 539616
Number of extensions: 628397
Number of successful extensions: 2196
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2175
Number of HSP's gapped (non-prelim): 50
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)