Query 040493
Match_columns 69
No_of_seqs 13 out of 15
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 14:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkw_Y 50S ribosomal protein L 99.4 1.3E-13 4.4E-18 86.2 2.9 61 1-65 1-70 (73)
2 1vs6_Z 50S ribosomal protein L 99.3 5.4E-14 1.9E-18 87.1 -3.7 61 1-62 1-68 (70)
3 3v2d_4 50S ribosomal protein L 99.0 9E-11 3.1E-15 73.2 3.0 57 1-61 1-66 (71)
4 3f1f_4 50S ribosomal protein L 98.8 6.6E-10 2.3E-14 73.0 0.3 57 1-61 27-92 (97)
5 3bbo_1 Ribosomal protein L31; 98.0 3.5E-09 1.2E-13 73.6 -11.7 61 1-65 49-120 (144)
6 1ntv_A Disabled homolog 1; bet 86.5 0.63 2.2E-05 30.0 3.2 53 9-63 88-145 (152)
7 4dbb_A Amyloid beta A4 precurs 82.7 2.9 0.0001 27.2 5.2 51 9-61 80-136 (162)
8 2ela_A Adapter protein contain 82.5 4.3 0.00015 26.9 6.1 56 9-66 97-164 (175)
9 2ej8_A DCC-interacting protein 81.0 5.6 0.00019 25.7 6.0 55 9-65 84-150 (160)
10 1aqc_A X11; PTB domain; 2.30A 77.6 4 0.00014 26.9 4.6 52 9-63 91-166 (172)
11 1p3r_A Disabled homolog 2; PTB 69.5 8 0.00027 25.0 4.5 53 9-63 87-144 (160)
12 3so6_A LDL receptor adaptor pr 66.8 12 0.00042 22.5 4.7 51 9-61 71-130 (137)
13 4g43_A MHC class I alpha chain 41.6 25 0.00085 23.8 3.3 36 1-36 1-36 (275)
14 3f0w_A NUMB-R, NUMB-like prote 41.0 32 0.0011 22.1 3.6 50 9-60 105-162 (168)
15 3suz_A Amyloid beta A4 precurs 39.9 36 0.0012 24.5 4.1 19 9-28 93-111 (388)
16 1k8r_B Protein kinase BYR2; si 31.8 28 0.00095 23.2 2.2 17 8-24 37-53 (110)
17 4en2_M AP-1 complex subunit MU 28.4 27 0.00091 24.3 1.8 12 9-20 249-260 (266)
18 1kcg_C ULBP3 protein; protein- 21.2 1.1E+02 0.0036 19.3 3.5 36 4-39 1-37 (178)
19 1j27_A Hypothetical protein TT 21.0 45 0.0016 20.8 1.6 24 35-60 16-39 (102)
No 1
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=99.39 E-value=1.3e-13 Score=86.17 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=54.9
Q ss_pred CCCCccccceEEEEEeecCeEEeeEEeEEeecceEE---------EEehhhhhhHhhhhHHHHHHHhhhhhhhh
Q 040493 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVY---------HFRARRQMAQSIGQVAKFRRRYEQQADAE 65 (69)
Q Consensus 1 mkKGlHPqmq~Is~Vtq~Grl~~vmmt~~~~~gkvy---------h~~aKrqma~s~GQiAKFKRRf~~~~~ae 65 (69)
|||||||..+.|.++-+.|..+.+.+|... +. -|+|+..+..+.|+|+||++||+....+.
T Consensus 1 MKk~IHP~y~~v~~~~s~g~~f~t~ST~~~----i~vdi~s~~HPFyTGkqk~vdt~GRVekF~kry~~~~~~~ 70 (73)
T 1nkw_Y 1 MQKDLHPKAVPCKIIYQGQVVMETMSTRPE----IHVDVWSGVHPFWTGEERFLDTEGRVDKFNKRFGDSYRRG 70 (73)
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEcccCCC----EEEEECCCCCcCCcCcEEEEeccccHHHHHHHHhcccccc
Confidence 999999999999999999999999999863 32 68999999999999999999999877643
No 2
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=99.28 E-value=5.4e-14 Score=87.06 Aligned_cols=61 Identities=25% Similarity=0.437 Sum_probs=52.6
Q ss_pred CCCCccccceEEEEEeecCeEEeeEEeEEe-------ecceEEEEehhhhhhHhhhhHHHHHHHhhhhh
Q 040493 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIH-------NVGKVYHFRARRQMAQSIGQVAKFRRRYEQQA 62 (69)
Q Consensus 1 mkKGlHPqmq~Is~Vtq~Grl~~vmmt~~~-------~~gkvyh~~aKrqma~s~GQiAKFKRRf~~~~ 62 (69)
|||||||..+.|.++-+.|..+.+.+|... ...-- -|+|+..+..+.|+|+||++||+...
T Consensus 1 MKk~IHP~y~~v~~~~s~g~~f~t~ST~~~ei~vdi~s~~HP-FyTG~qk~vdt~GRV~kF~kry~~~~ 68 (70)
T 1vs6_Z 1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHP-FFTGKQRDVATGGRVDRFNKRFNIPG 68 (70)
T ss_dssp CCCTTSCCCCCCBCCCCSSCCCCCBCCCCCCCCCBCCSSSCC-BCCCCCTTTTTHHHHSCSSTTTTTTS
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEeecCCCcEeeeecCCCCc-cCcCcEEEEeccccHHHHHHHhhccc
Confidence 999999999999999999999999999753 11122 59999999999999999999998753
No 3
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=99.04 E-value=9e-11 Score=73.17 Aligned_cols=57 Identities=26% Similarity=0.621 Sum_probs=32.7
Q ss_pred CCCCccccceEEEEEeecCeEEeeEEeEEeecceEE---------EEehhhhhhHhhhhHHHHHHHhhhh
Q 040493 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVY---------HFRARRQMAQSIGQVAKFRRRYEQQ 61 (69)
Q Consensus 1 mkKGlHPqmq~Is~Vtq~Grl~~vmmt~~~~~gkvy---------h~~aKrqma~s~GQiAKFKRRf~~~ 61 (69)
|||||||..+-|.++-+.|..|.+-+|+. .+. -|+|+..+..+.|+|+||++||+..
T Consensus 1 MKk~IHP~Y~~v~v~c~~g~~f~t~ST~~----~i~vdi~S~~HPFyTGkqk~vdt~GRVekF~kryg~~ 66 (71)
T 3v2d_4 1 MKEGIHPKLVPARIICGCGNVIETYSTKP----EIYVEVCSKCHPFYTGQQRFVDTEGRVERFQRRYGDS 66 (71)
T ss_dssp CCSSSSCCCEEEEEEETTSCEEEEEESSS----EEEESCCTTTSSSSSCC--------------------
T ss_pred CCCCCCCCCeEEEEEECCCCEEEeeeecc----CEEEEecCCCCCCCCCCEEEEcccCcHHHHHHHHccc
Confidence 99999999999999989999999999975 244 5999999999999999999999754
No 4
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=98.79 E-value=6.6e-10 Score=73.00 Aligned_cols=57 Identities=25% Similarity=0.605 Sum_probs=19.0
Q ss_pred CCCCccccceEEEEEeecCeEEeeEEeEEeecceEE---------EEehhhhhhHhhhhHHHHHHHhhhh
Q 040493 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVY---------HFRARRQMAQSIGQVAKFRRRYEQQ 61 (69)
Q Consensus 1 mkKGlHPqmq~Is~Vtq~Grl~~vmmt~~~~~gkvy---------h~~aKrqma~s~GQiAKFKRRf~~~ 61 (69)
|||||||..+-|.++-+.|..|.+-+|+. .+. -|+|+..+..+.|+|+||++||...
T Consensus 27 MKk~IHP~Y~~v~v~ct~G~~f~t~ST~~----~i~vDI~S~~HPFYTGkqk~vdt~GRVeKF~kRyg~~ 92 (97)
T 3f1f_4 27 VKEGIHPKLVPARIICGCGNVIETYSTKP----EIYVEVCSKCHPFYTGQQRFVDTEGRVERFQRRYGDS 92 (97)
T ss_dssp ---------CCCEEEETTEEEEECCCSSC----CEEESSCTTC---------------------------
T ss_pred ccCCCCCCCeEEEEEECCCCEEEeeeeee----EEEEEECCCCCCCCcCCEEEEcccCcHHHHHHHHccc
Confidence 89999999999999989999999999974 233 5999999999999999999999753
No 5
>3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.01 E-value=3.5e-09 Score=73.64 Aligned_cols=61 Identities=28% Similarity=0.354 Sum_probs=44.7
Q ss_pred CCCCccccceEEEEEeecCeEEe-eEEeEEeecceEE---------EEehhhh-hhHhhhhHHHHHHHhhhhhhhh
Q 040493 1 MKKGLHPQMQWISYVTQSGRLMH-VMMTKIHNVGKVY---------HFRARRQ-MAQSIGQVAKFRRRYEQQADAE 65 (69)
Q Consensus 1 mkKGlHPqmq~Is~Vtq~Grl~~-vmmt~~~~~gkvy---------h~~aKrq-ma~s~GQiAKFKRRf~~~~~ae 65 (69)
||+||||..+-+.+|..+|..+- +-+|.. .+. -|+|+.+ +..+.|+|+||++||+..++++
T Consensus 49 MKk~IHPeY~~Vv~v~cs~g~~f~t~ST~~----~i~VDIcS~cHPFYTGkqkk~vDt~GRVeKF~KRyg~~~~~~ 120 (144)
T 3bbo_1 49 RKKELHPEFHEDAKVYCNGELVMTTGGTKK----EYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIM 120 (144)
T ss_dssp -CTTTCCCCCHHHHHCSSSCTTTSCSSCSC----SSSCCSSCCCCCSSSSSSSCCCCCCCCCCCSSCCCCCCSSCC
T ss_pred cCCCCCCCCEEeEEEEcCCCeEEEEEecCc----eEEeeecCCCCccEeCceeeEecccccHHHHHHHHhcccccc
Confidence 89999999887677777766544 444432 122 6999876 7888999999999998776643
No 6
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Probab=86.48 E-value=0.63 Score=29.99 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=33.4
Q ss_pred ceEEEEEeecCeEEeeEEeEEee-cceEEE-Eehh---hhhhHhhhhHHHHHHHhhhhhh
Q 040493 9 MQWISYVTQSGRLMHVMMTKIHN-VGKVYH-FRAR---RQMAQSIGQVAKFRRRYEQQAD 63 (69)
Q Consensus 9 mq~Is~Vtq~Grl~~vmmt~~~~-~gkvyh-~~aK---rqma~s~GQiAKFKRRf~~~~~ 63 (69)
|++|||++++.+--+++.-.-.+ ...+|+ +... ..+..++||. |...|++...
T Consensus 88 l~~ISf~a~d~~d~r~FafI~k~~~~h~f~v~~s~~~A~~I~~tigqA--F~~ay~~~~~ 145 (152)
T 1ntv_A 88 VHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDL--FQLIYELKQR 145 (152)
T ss_dssp GGGEEEEEECTTCTTEEEEEESSTTCCEEEEEEESSCSHHHHHHHHHH--HHHHHHHHHT
T ss_pred cCcEEEEeCCCCCCcEEEEEEEcCCeEEEEEEccHHHHHHHHHHHHHH--HHHHHHHHhH
Confidence 58999999987664444333222 223443 3333 6788899996 7777776655
No 7
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=82.71 E-value=2.9 Score=27.22 Aligned_cols=51 Identities=27% Similarity=0.485 Sum_probs=31.2
Q ss_pred ceEEEEEeecCeEEeeEEeEE------eecceEEEEehhhhhhHhhhhHHHHHHHhhhh
Q 040493 9 MQWISYVTQSGRLMHVMMTKI------HNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQ 61 (69)
Q Consensus 9 mq~Is~Vtq~Grl~~vmmt~~------~~~gkvyh~~aKrqma~s~GQiAKFKRRf~~~ 61 (69)
|++|||++++++.+-.+.-.. .+.=.||.=..-..++.++||. |.-+|..-
T Consensus 80 l~~ISf~a~~~~~f~fIar~~~~~~~~~~~CHVF~~~~A~~I~~tigqA--F~~ay~~~ 136 (162)
T 4dbb_A 80 LRTISYIADIGNIVVLMARRRMPRSQYKMICHVFESEDAQLIAQSIGQA--FSVAYQEF 136 (162)
T ss_dssp GGGEEEEEEETTEEEEEEEECCSTTCEEEEEEEEECTTHHHHHHHHHHH--HHHHHGGG
T ss_pred cceeEEEEECCCEEEEEeccCCCCCCCcEEEEEEECCCHHHHHHHHHHH--HHHHHHHH
Confidence 689999999887665544332 1112233222245678889986 77777543
No 8
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Probab=82.55 E-value=4.3 Score=26.94 Aligned_cols=56 Identities=9% Similarity=0.138 Sum_probs=32.3
Q ss_pred ceEEEEEeecCeEEeeEEeEEeec-------ceE--EEEehh---hhhhHhhhhHHHHHHHhhhhhhhhh
Q 040493 9 MQWISYVTQSGRLMHVMMTKIHNV-------GKV--YHFRAR---RQMAQSIGQVAKFRRRYEQQADAEN 66 (69)
Q Consensus 9 mq~Is~Vtq~Grl~~vmmt~~~~~-------gkv--yh~~aK---rqma~s~GQiAKFKRRf~~~~~ae~ 66 (69)
++.|||++++...-+++.=+-... ... |-|... ..++.++||. |..+|+..-+++.
T Consensus 97 i~~ISfca~d~~d~r~FafIar~~~~~~~~~~~~~CHVF~~~~~A~~I~~tIgqA--F~~ay~~~l~~~~ 164 (175)
T 2ela_A 97 LPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNEGEKICDSVGLA--KQIALHAELDRRA 164 (175)
T ss_dssp GGGEEEEEEETTEEEEEEEEEEEC-------CEEEEEEEEESSCHHHHHHHHHHH--HHHHHHHHHCC--
T ss_pred cCEEEEEEeCCCCCcEEEEEEecCccccCCCcceEEEEEEcchhHHHHHHHHHHH--HHHHHHHHHHhhH
Confidence 589999999987544443332222 111 233332 3467788986 8888876555333
No 9
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=80.99 E-value=5.6 Score=25.68 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=30.5
Q ss_pred ceEEEEEeecCeEEeeEEeEEeec-------ce--EEEEehh---hhhhHhhhhHHHHHHHhhhhhhhh
Q 040493 9 MQWISYVTQSGRLMHVMMTKIHNV-------GK--VYHFRAR---RQMAQSIGQVAKFRRRYEQQADAE 65 (69)
Q Consensus 9 mq~Is~Vtq~Grl~~vmmt~~~~~-------gk--vyh~~aK---rqma~s~GQiAKFKRRf~~~~~ae 65 (69)
++.|||++++...-+++.=+-.+. .. -|-|... ..++.++||. |...|+..-+++
T Consensus 84 i~~ISfca~d~~~~r~FafIar~~~~~~~~~~~~~CHVF~~~~~A~~I~~tigqA--F~~ay~~~l~~~ 150 (160)
T 2ej8_A 84 LPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNEGEKICDSVGLA--KQIALHAELDRR 150 (160)
T ss_dssp GGGEEEEEEETTEEEEEEEEEEECC------CEEEEEEEEESSCHHHHHHHHHHH--HHHHHHHC----
T ss_pred CCeEEEEEecCCCCeEEEEEEecCCcccCCCccEEEEEEEcchhHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 688999999987544443332222 11 1233332 3466788986 777787655533
No 10
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Probab=77.55 E-value=4 Score=26.89 Aligned_cols=52 Identities=27% Similarity=0.475 Sum_probs=31.1
Q ss_pred ceEEEEEeecCeEEeeEEeEEe------------------------ecceEEEEehhhhhhHhhhhHHHHHHHhhhhhh
Q 040493 9 MQWISYVTQSGRLMHVMMTKIH------------------------NVGKVYHFRARRQMAQSIGQVAKFRRRYEQQAD 63 (69)
Q Consensus 9 mq~Is~Vtq~Grl~~vmmt~~~------------------------~~gkvyh~~aKrqma~s~GQiAKFKRRf~~~~~ 63 (69)
|+.|||++.+++.|-.+ ++-. +.=.||.=..-..+++++||. |...|..--.
T Consensus 91 l~~ISf~aD~~~~FayI-ar~~~~~~~~~~n~~~~~~~~~~~~~~~~~CHVF~s~~A~~I~~tIGqA--F~~ay~~~l~ 166 (172)
T 1aqc_A 91 LRTISYIADIGNIVVLM-ARRRIPRSNSQENVEASHPSQDGKRQYKMICHVFESEDAQLIAQSIGQA--FSVAYQEFLR 166 (172)
T ss_dssp GGGEEEEEEETTEEEEE-ECCC----------------------CEEEEEEEECTTHHHHHHHHHHH--HHHHHHHHHC
T ss_pred cceEEEEeeCCcEEEEE-ecCCCccccccccccccccccccCCCCcEEEEEEECccHHHHHHHHHHH--HHHHHHHHHH
Confidence 58999999998865443 3321 111233222235678899996 6677765433
No 11
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=69.53 E-value=8 Score=24.99 Aligned_cols=53 Identities=9% Similarity=0.195 Sum_probs=31.7
Q ss_pred ceEEEEEeecCeEEeeEEeEEeecc-eEEE-Eehh---hhhhHhhhhHHHHHHHhhhhhh
Q 040493 9 MQWISYVTQSGRLMHVMMTKIHNVG-KVYH-FRAR---RQMAQSIGQVAKFRRRYEQQAD 63 (69)
Q Consensus 9 mq~Is~Vtq~Grl~~vmmt~~~~~g-kvyh-~~aK---rqma~s~GQiAKFKRRf~~~~~ 63 (69)
+++|||++++.+--+++.-.-.+.+ .+|| |... ..+..++||+ |...|++.-.
T Consensus 87 l~~ISfca~d~~d~r~FafI~k~~~~h~c~vf~s~~~A~~I~~tigqA--F~~ay~~~~~ 144 (160)
T 1p3r_A 87 VNKISFIARDVTDNRAFGYVCGGEGQHQFFAIKTGQQAEPLVVDLKDL--FQVIYNVKKK 144 (160)
T ss_dssp GGGEEEEEECTTCTTEEEEEESSTTCEEEEEEEESSCSHHHHHHHHHH--HHHHHHHHHH
T ss_pred cCeEEEEecCCCCCcEEEEEEecCCEEEEEEEccHHHHHHHHHHHHHH--HHHHHHhhhH
Confidence 6899999998776455433332222 2333 4332 4677899996 6666655433
No 12
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=66.77 E-value=12 Score=22.54 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=30.2
Q ss_pred ceEEEEEeecCeEEeeEEeEEeec--c--eEEEEehh-----hhhhHhhhhHHHHHHHhhhh
Q 040493 9 MQWISYVTQSGRLMHVMMTKIHNV--G--KVYHFRAR-----RQMAQSIGQVAKFRRRYEQQ 61 (69)
Q Consensus 9 mq~Is~Vtq~Grl~~vmmt~~~~~--g--kvyh~~aK-----rqma~s~GQiAKFKRRf~~~ 61 (69)
++.|||++.++.--+++.-+-... . .-+.|... ..++.++||. |+..|++.
T Consensus 71 i~~Isf~~~d~~~~~~FafI~r~~~~~~~~CHvF~c~~~~~A~~i~~~l~~A--F~~a~~~~ 130 (137)
T 3so6_A 71 IYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCTKRKVAQAVTLTVAQA--FKVAFEFW 130 (137)
T ss_dssp GGGEEEEEECSSSTTEEEEEEECSSSSCEEEEEEECSSHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred cCEEEEEEecCCCCCEEEEEEEcCCCCeEEEEEEEeCCHHHHHHHHHHHHHH--HHHHHHHH
Confidence 689999998775433433322222 2 22345543 3567788886 77777654
No 13
>4g43_A MHC class I alpha chain 2; MHC I complex, narrow binding groove, immune system; 1.80A {Gallus gallus} PDB: 4g42_A 4e0r_A 3bev_A 3bew_A
Probab=41.59 E-value=25 Score=23.83 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=30.5
Q ss_pred CCCCccccceEEEEEeecCeEEeeEEeEEeecceEE
Q 040493 1 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVY 36 (69)
Q Consensus 1 mkKGlHPqmq~Is~Vtq~Grl~~vmmt~~~~~gkvy 36 (69)
|..|.|-|.+-.+.|...|.-+|.+.++-...|..|
T Consensus 1 ~~~g~HSL~y~~T~~s~p~~g~P~f~~vg~vDd~qf 36 (275)
T 4g43_A 1 MEFELHTLRYIRTAMTDPGPGQPWFVTVGYVDGELF 36 (275)
T ss_dssp ---CCEEEEEEEEEESCCCTTCCSEEEEEEETTEEE
T ss_pred CCCCceeEEEEEEEEcCCCCCCCeEEEEEecCCeEE
Confidence 778999999999999998888999999998888887
No 14
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=41.02 E-value=32 Score=22.14 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=28.8
Q ss_pred ceEEEEEeecCeEEeeEEeEEeecc--e--EEEEeh----hhhhhHhhhhHHHHHHHhhh
Q 040493 9 MQWISYVTQSGRLMHVMMTKIHNVG--K--VYHFRA----RRQMAQSIGQVAKFRRRYEQ 60 (69)
Q Consensus 9 mq~Is~Vtq~Grl~~vmmt~~~~~g--k--vyh~~a----Krqma~s~GQiAKFKRRf~~ 60 (69)
++.|||++.++.--+++.-+-...+ . -+-|.. -..++.++||+ |.-.|+.
T Consensus 105 i~~ISf~~~d~~~~~~FafIar~~~~~~~~CHvF~c~~~~A~~I~~aIgqA--F~~a~~~ 162 (168)
T 3f0w_A 105 IEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCA--FAACLER 162 (168)
T ss_dssp GGGEEEEEECSSCTTEEEEEEEETTTTEEEEEEEEESSSCHHHHHHHHHHH--HHHHHHH
T ss_pred cCcEEEEecCCCCCcEEEEEEecCCCCcEEEEEEEeccchHHHHHHHHHHH--HHHHHHH
Confidence 6899999997764444433222222 2 223443 34688899986 5555543
No 15
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=39.87 E-value=36 Score=24.49 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=14.2
Q ss_pred ceEEEEEeecCeEEeeEEeE
Q 040493 9 MQWISYVTQSGRLMHVMMTK 28 (69)
Q Consensus 9 mq~Is~Vtq~Grl~~vmmt~ 28 (69)
|+.|||++..+..+-. |++
T Consensus 93 l~~IS~~~d~~~~~~~-iak 111 (388)
T 3suz_A 93 LRTISYIADIGNIVVL-MAR 111 (388)
T ss_dssp GGGEEEEEECSSEEEE-EEE
T ss_pred ccceeEEeecCceEEE-EEe
Confidence 7899999988875544 444
No 16
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=31.79 E-value=28 Score=23.19 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.4
Q ss_pred cceEEEEEeecCeEEee
Q 040493 8 QMQWISYVTQSGRLMHV 24 (69)
Q Consensus 8 qmq~Is~Vtq~Grl~~v 24 (69)
--.|+-.|||+||+-+|
T Consensus 37 pskw~Vcvtqssr~~~i 53 (110)
T 1k8r_B 37 ASKFIVCVSQSSRIKLI 53 (110)
T ss_dssp TTSEEEEEECSSSEEEC
T ss_pred hhHeEEEEecCceEEEe
Confidence 34699999999998876
No 17
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=28.44 E-value=27 Score=24.32 Aligned_cols=12 Identities=42% Similarity=1.193 Sum_probs=10.9
Q ss_pred ceEEEEEeecCe
Q 040493 9 MQWISYVTQSGR 20 (69)
Q Consensus 9 mq~Is~Vtq~Gr 20 (69)
.-|+-|+|++|+
T Consensus 249 ~kwVrY~T~sg~ 260 (266)
T 4en2_M 249 LPWVRYITQNGD 260 (266)
T ss_dssp EEEEEEEEECSS
T ss_pred CCCEEEEEeCCC
Confidence 579999999997
No 18
>1kcg_C ULBP3 protein; protein-protein complex, C-type lectin-like receptor, MHC class I-like molecule, immune system; HET: GSH; 2.60A {Homo sapiens} SCOP: d.19.1.1
Probab=21.17 E-value=1.1e+02 Score=19.34 Aligned_cols=36 Identities=6% Similarity=-0.033 Sum_probs=31.2
Q ss_pred CccccceEEEEEeecCeEEeeEEeEEeecceEE-EEe
Q 040493 4 GLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVY-HFR 39 (69)
Q Consensus 4 GlHPqmq~Is~Vtq~Grl~~vmmt~~~~~gkvy-h~~ 39 (69)
|.|-|-+-.+.|+..|.-+|.++++-..-|..| +|.
T Consensus 1 ~sHSL~y~~T~~s~~~~g~P~f~~vG~VDd~qf~~yD 37 (178)
T 1kcg_C 1 DAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYD 37 (178)
T ss_dssp CCEEEEEEEEEESSCCSSCCSEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEEEeCCCCCCCCeEEEEEEECCEEEEEEe
Confidence 679999999999999999999999998888888 443
No 19
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=20.97 E-value=45 Score=20.81 Aligned_cols=24 Identities=8% Similarity=0.411 Sum_probs=20.2
Q ss_pred EEEEehhhhhhHhhhhHHHHHHHhhh
Q 040493 35 VYHFRARRQMAQSIGQVAKFRRRYEQ 60 (69)
Q Consensus 35 vyh~~aKrqma~s~GQiAKFKRRf~~ 60 (69)
+...-.||++-.|+ ++|+|+||+-
T Consensus 16 ~~SLKeKR~vvksl--~~rlr~rFnV 39 (102)
T 1j27_A 16 ARSLKEKRALIKPA--LERLKARFPV 39 (102)
T ss_dssp CSSHHHHHHHHHHH--HHHHHHHSSC
T ss_pred CCChHHhHHHHHHH--HHHHhhcCCe
Confidence 55677899999987 8999999964
Done!