Your job contains 1 sequence.
>040494
MIESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVNFRHFHSL
SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI
PQYGGGTASLNVTVAASIVLHHFGVWAGFSERTRDGNKYVVAERSARQVRRSFCAEKPES
IIEMRRSRRENASNGFFDGSGNDVSSSSLLDALFTDE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040494
(217 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130310 - symbol:AT4G15520 species:3702 "Arabi... 816 2.5e-81 1
GENEDB_PFALCIPARUM|PF10_0300 - symbol:PF10_0300 "RNA meth... 357 1.1e-32 1
UNIPROTKB|Q8IJ98 - symbol:PF10_0300 "RNA methyltransferas... 357 1.1e-32 1
TIGR_CMR|CPS_4975 - symbol:CPS_4975 "tRNA (guanosine-2'-O... 183 3.0e-14 1
UNIPROTKB|P0AGJ2 - symbol:trmH species:83333 "Escherichia... 174 2.7e-13 1
ZFIN|ZDB-GENE-090313-347 - symbol:si:dkey-85a20.4 "si:dke... 146 2.5e-10 1
UNIPROTKB|Q3A9P4 - symbol:CHY_2335 "RNA methyltransferase... 143 7.4e-09 1
TIGR_CMR|CHY_2335 - symbol:CHY_2335 "RNA methyltransferas... 143 7.4e-09 1
TIGR_CMR|CPS_0784 - symbol:CPS_0784 "RNA methyltransferas... 132 7.6e-09 1
TAIR|locus:2151001 - symbol:AT5G15390 species:3702 "Arabi... 142 3.7e-08 1
ZFIN|ZDB-GENE-090313-346 - symbol:tarbp1 "TAR (HIV-1) RNA... 146 7.2e-08 1
TIGR_CMR|BA_0091 - symbol:BA_0091 "RNA methyltransferase,... 136 1.1e-07 1
TIGR_CMR|CBU_0986 - symbol:CBU_0986 "RNA methyltransferas... 123 6.5e-06 1
WB|WBGene00012864 - symbol:Y45F3A.9 species:6239 "Caenorh... 124 7.2e-06 1
UNIPROTKB|J9P5E1 - symbol:TARBP1 "Uncharacterized protein... 130 1.3e-05 1
UNIPROTKB|F1PWU0 - symbol:TARBP1 "Uncharacterized protein... 130 1.3e-05 1
FB|FBgn0038953 - symbol:CG18596 species:7227 "Drosophila ... 129 1.4e-05 1
TIGR_CMR|BA_4805 - symbol:BA_4805 "RNA methyltransferase,... 120 1.6e-05 1
UNIPROTKB|F1RGW6 - symbol:TARBP1 "Uncharacterized protein... 129 2.1e-05 1
TIGR_CMR|GSU_1462 - symbol:GSU_1462 "RNA methyltransferas... 116 4.6e-05 1
UNIPROTKB|Q13395 - symbol:TARBP1 "Probable methyltransfer... 125 6.4e-05 1
UNIPROTKB|P94978 - symbol:tsnR "TrmH family RNA methyltra... 115 7.3e-05 1
UNIPROTKB|F1NX84 - symbol:MRM1 "Uncharacterized protein" ... 116 8.4e-05 1
UNIPROTKB|F1N6T6 - symbol:TARBP1 "Uncharacterized protein... 122 0.00012 1
TIGR_CMR|SPO_1150 - symbol:SPO_1150 "RNA methyltransferas... 113 0.00012 1
UNIPROTKB|P63177 - symbol:rlmB "23S rRNA 2'-O-ribose G225... 111 0.00019 1
TIGR_CMR|SO_3934 - symbol:SO_3934 "RNA methyltransferase,... 111 0.00020 1
TIGR_CMR|NSE_0262 - symbol:NSE_0262 "RNA methyltransferas... 110 0.00025 1
UNIPROTKB|F1NP06 - symbol:TARBP1 "Uncharacterized protein... 119 0.00027 1
UNIPROTKB|E2RN23 - symbol:MRM1 "Uncharacterized protein" ... 109 0.00070 1
DICTYBASE|DDB_G0277479 - symbol:DDB_G0277479 "rRNA methyl... 111 0.00078 1
UNIPROTKB|Q9KNY2 - symbol:rlmB "23S rRNA (guanosine-2'-O-... 106 0.00081 1
TIGR_CMR|VC_2598 - symbol:VC_2598 "RNA methyltransferase,... 106 0.00081 1
>TAIR|locus:2130310 [details] [associations]
symbol:AT4G15520 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA;ISS]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001537 Pfam:PF00588 EMBL:CP002687 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 UniGene:At.44851
HSSP:P39290 EMBL:BT004979 EMBL:AK117406 IPI:IPI00545342
RefSeq:NP_193287.1 UniGene:At.66627 ProteinModelPortal:Q8GYT1
STRING:Q8GYT1 PRIDE:Q8GYT1 EnsemblPlants:AT4G15520.1 GeneID:827225
KEGG:ath:AT4G15520 OMA:MFRTADA ProtClustDB:CLSN2685602
Genevestigator:Q8GYT1 Uniprot:Q8GYT1
Length = 222
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 160/218 (73%), Positives = 177/218 (81%)
Query: 3 ESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVNFRHFHSLSD 62
ESYVVVHNIAKRHNVGTLARSATAFGV+E+ILVGRRDFNAFGSHGS SH+ FRHFHSL +
Sbjct: 5 ESYVVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNAFGSHGSASHIRFRHFHSLIE 64
Query: 63 ARVFLKS-KDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIP 121
AR +LK KDCDICGVEI D A V +HPFK++TAFLLGNEG GLSAKE EICDFFVYIP
Sbjct: 65 ARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICDFFVYIP 124
Query: 122 QYGGGTASLNVTVAASIVLHHFGVWAGFSERTRDGNKYVVAERSARQVRRSFCAEKPXXX 181
QYG GTASLNVTVAASIVLHHFGVWAGFSER RDG+K++VA+R RQ RR+FCA
Sbjct: 125 QYGCGTASLNVTVAASIVLHHFGVWAGFSERVRDGSKFIVADRPVRQGRRNFCAGTEESV 184
Query: 182 XXXXXXXXXNASNGFFDGSGND--VSSSSLLDALFTDE 217
+A NGFFD +GN+ SSS LLD LF +E
Sbjct: 185 IEERKLRKESAENGFFDDNGNENGSSSSDLLDGLFLNE 222
>GENEDB_PFALCIPARUM|PF10_0300 [details] [associations]
symbol:PF10_0300 "RNA methyltransferase,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 EMBL:AE014185 GO:GO:0008173
GO:GO:0001510 RefSeq:XP_001347584.1 ProteinModelPortal:Q8IJ98
EnsemblProtists:PF10_0300:mRNA GeneID:810457 KEGG:pfa:PF10_0300
EuPathDB:PlasmoDB:PF3D7_1030700 HOGENOM:HOG000241207
ProtClustDB:CLSZ2431610 Uniprot:Q8IJ98
Length = 257
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 66/169 (39%), Positives = 110/169 (65%)
Query: 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFGSHGSTSHVNFRHFHS 59
I++YVV++NI K+ NVG + RS AF V ++ +VG+R + N FG+ G+ ++ +F +
Sbjct: 51 IKTYVVIYNIGKKKNVGCIVRSCVAFNVHKIFIVGKRKKEINFFGNMGTYDYITIEYFDN 110
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFK-KSTAFLLGNEGMGLSAKECEICDFFV 118
+ + + +L D + EI+ NA+ +T +P++ K TAFL GNEG G+ +ICD +
Sbjct: 111 IYELKEYLTKHDILLYACEISVNALSITTNPYEHKDTAFLFGNEGTGIHDNVLKICDKII 170
Query: 119 YIPQYGGGTASLNVTVAASIVLHHFGVWAGFSERTRDGNKYVVAERSAR 167
YIPQYG GTASLNV+V+ +I+L +F VWA + + K++V ++ ++
Sbjct: 171 YIPQYGKGTASLNVSVSCAIILQNFAVWANYEQTEIKNKKFIVQKKMSK 219
>UNIPROTKB|Q8IJ98 [details] [associations]
symbol:PF10_0300 "RNA methyltransferase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 EMBL:AE014185 GO:GO:0008173
GO:GO:0001510 RefSeq:XP_001347584.1 ProteinModelPortal:Q8IJ98
EnsemblProtists:PF10_0300:mRNA GeneID:810457 KEGG:pfa:PF10_0300
EuPathDB:PlasmoDB:PF3D7_1030700 HOGENOM:HOG000241207
ProtClustDB:CLSZ2431610 Uniprot:Q8IJ98
Length = 257
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 66/169 (39%), Positives = 110/169 (65%)
Query: 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFGSHGSTSHVNFRHFHS 59
I++YVV++NI K+ NVG + RS AF V ++ +VG+R + N FG+ G+ ++ +F +
Sbjct: 51 IKTYVVIYNIGKKKNVGCIVRSCVAFNVHKIFIVGKRKKEINFFGNMGTYDYITIEYFDN 110
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFK-KSTAFLLGNEGMGLSAKECEICDFFV 118
+ + + +L D + EI+ NA+ +T +P++ K TAFL GNEG G+ +ICD +
Sbjct: 111 IYELKEYLTKHDILLYACEISVNALSITTNPYEHKDTAFLFGNEGTGIHDNVLKICDKII 170
Query: 119 YIPQYGGGTASLNVTVAASIVLHHFGVWAGFSERTRDGNKYVVAERSAR 167
YIPQYG GTASLNV+V+ +I+L +F VWA + + K++V ++ ++
Sbjct: 171 YIPQYGKGTASLNVSVSCAIILQNFAVWANYEQTEIKNKKFIVQKKMSK 219
>TIGR_CMR|CPS_4975 [details] [associations]
symbol:CPS_4975 "tRNA (guanosine-2'-O-)-methyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006396 "RNA
processing" evidence=ISS] [GO:0009020 "tRNA
(guanosine-2'-O-)-methyltransferase activity" evidence=ISS]
InterPro:IPR001537 InterPro:IPR022724 Pfam:PF00588 Pfam:PF12105
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0001510
eggNOG:COG0566 GO:GO:0009020 HOGENOM:HOG000285175 KO:K00556
ProtClustDB:PRK11081 RefSeq:YP_271614.1 ProteinModelPortal:Q47UA9
STRING:Q47UA9 GeneID:3523112 KEGG:cps:CPS_4975 PATRIC:21472743
OMA:VEKPHNL BioCyc:CPSY167879:GI48-4976-MONOMER Uniprot:Q47UA9
Length = 235
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 42/139 (30%), Positives = 74/139 (53%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD---FNAFGSHGSTSHVNFRHFHSLSD 62
V + + K HN+ + R+ A G+S++ V + + + GS + ++ ++H +D
Sbjct: 22 VCMEGLHKSHNLAAVVRTCDAIGISDVHAVWKSEEAEVRGGSAAGSQNWIDVHNYHKTAD 81
Query: 63 ARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQ 122
A LK++ + ++D AV+ T+ + K TA +LG E G S + E+ D + IP
Sbjct: 82 AIAALKAQGMQVLVTNLSDTAVNFTEIDYTKPTAIILGQEKFGTSEEALELADQHIVIPM 141
Query: 123 YGGGTASLNVTVAASIVLH 141
G SLNV+VA S+VL+
Sbjct: 142 VGM-VQSLNVSVACSVVLY 159
>UNIPROTKB|P0AGJ2 [details] [associations]
symbol:trmH species:83333 "Escherichia coli K-12"
[GO:0009020 "tRNA (guanosine-2'-O-)-methyltransferase activity"
evidence=IEA;IMP] [GO:0030488 "tRNA methylation" evidence=TAS]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001537 InterPro:IPR022724 Pfam:PF00588
Pfam:PF12105 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
EMBL:L10328 eggNOG:COG0566 EMBL:M24503 GO:GO:0009020 PIR:JV0043
RefSeq:NP_418108.1 RefSeq:YP_491783.1 ProteinModelPortal:P0AGJ2
SMR:P0AGJ2 DIP:DIP-35977N IntAct:P0AGJ2 PRIDE:P0AGJ2
EnsemblBacteria:EBESCT00000003689 EnsemblBacteria:EBESCT00000016548
GeneID:12933575 GeneID:948161 KEGG:ecj:Y75_p3523 KEGG:eco:b3651
PATRIC:32122789 EchoBASE:EB0960 EcoGene:EG10967
HOGENOM:HOG000285175 KO:K00556 OMA:VHAVWPT ProtClustDB:PRK11081
BioCyc:EcoCyc:EG10967-MONOMER BioCyc:ECOL316407:JW3626-MONOMER
BioCyc:MetaCyc:EG10967-MONOMER Genevestigator:P0AGJ2 Uniprot:P0AGJ2
Length = 229
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 44/139 (31%), Positives = 71/139 (51%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILV---GRRDFNAFGSHGSTSHVNFRHFHSLSD 62
V + + K HNV + R+A A GV E+ V R A + GS S V + ++ D
Sbjct: 22 VCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGD 81
Query: 63 ARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQ 122
A LK + I ++DNAVD + + + T L+G E G++ + + D + IP
Sbjct: 82 AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 141
Query: 123 YGGGTASLNVTVAASIVLH 141
G SLNV+VA++++L+
Sbjct: 142 IGM-VQSLNVSVASALILY 159
>ZFIN|ZDB-GENE-090313-347 [details] [associations]
symbol:si:dkey-85a20.4 "si:dkey-85a20.4"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 Pfam:PF00588 ZFIN:ZDB-GENE-090313-347
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 OrthoDB:EOG4S7JP4 GeneTree:ENSGT00390000003939
EMBL:BX324188 IPI:IPI00929029 UniGene:Dr.158172
Ensembl:ENSDART00000135999 Uniprot:B8A4Z4
Length = 191
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 46/144 (31%), Positives = 70/144 (48%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN--AFGSHGSTSHVNFRHFH----S 59
VV I K N+G L R+ FG ++L R N F + +S +
Sbjct: 39 VVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQFQALSVSSELWLPMMEVKPAE 98
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
LSD KS+ + GVE T N+ + + F + + LLGNE G+ A ++ D V
Sbjct: 99 LSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVE 158
Query: 120 IPQYGGGTASLNVTVAASIVLHHF 143
IPQ+G T SLNV V+A++++ +
Sbjct: 159 IPQFGV-TRSLNVHVSAALLVWEY 181
>UNIPROTKB|Q3A9P4 [details] [associations]
symbol:CHY_2335 "RNA methyltransferase, TrmH family, group
3" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
RefSeq:YP_361140.1 ProteinModelPortal:Q3A9P4 STRING:Q3A9P4
GeneID:3727244 KEGG:chy:CHY_2335 PATRIC:21277737 OMA:DKGFWIY
BioCyc:CHYD246194:GJCN-2334-MONOMER Uniprot:Q3A9P4
Length = 237
Score = 143 (55.4 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 42/140 (30%), Positives = 70/140 (50%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFG-----SHGSTSHVNFRHFHSL 60
+V++++ N+G + RSA AFGV +I+ RR G S G+ V ++
Sbjct: 91 LVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRRAVQVTGAVAKASAGAYLKVPVARCTNV 150
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
++ +LK K + G + A + FK A ++G E +GL++ CDF V I
Sbjct: 151 AETLRYLKEKGAWVVGADAKSKA-SLWDTDFKLPLALVIGGENVGLTSHILRECDFTVSI 209
Query: 121 PQYGGGTASLNVTVAASIVL 140
P G SLN +VAA++++
Sbjct: 210 PMVGT-INSLNASVAAALLM 228
>TIGR_CMR|CHY_2335 [details] [associations]
symbol:CHY_2335 "RNA methyltransferase, TrmH family, group
3" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
RefSeq:YP_361140.1 ProteinModelPortal:Q3A9P4 STRING:Q3A9P4
GeneID:3727244 KEGG:chy:CHY_2335 PATRIC:21277737 OMA:DKGFWIY
BioCyc:CHYD246194:GJCN-2334-MONOMER Uniprot:Q3A9P4
Length = 237
Score = 143 (55.4 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 42/140 (30%), Positives = 70/140 (50%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFG-----SHGSTSHVNFRHFHSL 60
+V++++ N+G + RSA AFGV +I+ RR G S G+ V ++
Sbjct: 91 LVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRRAVQVTGAVAKASAGAYLKVPVARCTNV 150
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
++ +LK K + G + A + FK A ++G E +GL++ CDF V I
Sbjct: 151 AETLRYLKEKGAWVVGADAKSKA-SLWDTDFKLPLALVIGGENVGLTSHILRECDFTVSI 209
Query: 121 PQYGGGTASLNVTVAASIVL 140
P G SLN +VAA++++
Sbjct: 210 PMVGT-INSLNASVAAALLM 228
>TIGR_CMR|CPS_0784 [details] [associations]
symbol:CPS_0784 "RNA methyltransferase, TrmH family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 RefSeq:YP_267533.1
ProteinModelPortal:Q488I1 STRING:Q488I1 GeneID:3520896
KEGG:cps:CPS_0784 PATRIC:21464873 HOGENOM:HOG000023814 OMA:ELCHESV
BioCyc:CPSY167879:GI48-870-MONOMER Uniprot:Q488I1
Length = 180
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 39/139 (28%), Positives = 65/139 (46%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN----AFGSHGSTSHVNFRHFHSLS 61
VV+ N+ +N+G R A AF + ++I+ G + S V + S +
Sbjct: 32 VVLDNVTNSYNIGAFIRLADAFAIEKVIVCGALTISDKKMKKASRNEAKWVCVEYSDSTT 91
Query: 62 DARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIP 121
+ L + I VE+ +VD T+ + +LGNE G+S ++ ++IP
Sbjct: 92 ASLQTLLDEGHAIYSVELCHESVDYTKVTYPAKCVLVLGNERKGVSEAALKLSLQQIHIP 151
Query: 122 QYGGGTASLNVTVAASIVL 140
+G G SLNV+ A +IVL
Sbjct: 152 MFGMGN-SLNVSTAGAIVL 169
>TAIR|locus:2151001 [details] [associations]
symbol:AT5G15390 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001537 Pfam:PF00588 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 EMBL:AL353993 eggNOG:COG0566 EMBL:AK228831
IPI:IPI00546903 PIR:T49974 RefSeq:NP_197043.1 UniGene:At.31808
ProteinModelPortal:Q9LXE4 SMR:Q9LXE4 PaxDb:Q9LXE4 PRIDE:Q9LXE4
EnsemblPlants:AT5G15390.1 GeneID:831391 KEGG:ath:AT5G15390
TAIR:At5g15390 HOGENOM:HOG000006028 InParanoid:Q9LXE4 OMA:GLSDFGN
PhylomeDB:Q9LXE4 ProtClustDB:CLSN2687459 Genevestigator:Q9LXE4
Uniprot:Q9LXE4
Length = 350
Score = 142 (55.0 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 50/182 (27%), Positives = 81/182 (44%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVG-----RRDFNAFGSHGSTSHVNFRHFHSL 60
+VV ++ N+ RSA A G+ + +V R + N S G+ ++ + +
Sbjct: 157 LVVEGLSDFGNISAAFRSADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLDIEFWDTP 216
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
+ LKS+ I + + V + + TA ++GNEG G+S + E+ D I
Sbjct: 217 KECFKVLKSRGYRIATTHLGMDTVSIYDMDWSCPTAIVVGNEGRGISDEALELSDLRCSI 276
Query: 121 PQYGGGTASLNVTVAASIVLHH--------FGVWAGFSERTRDGNKYVVAERSARQVRRS 172
P G S NV+VAA I++HH G SE ++ ++AE S R R S
Sbjct: 277 PM-NGMVDSFNVSVAAGILMHHAVSDRTTRLGSHGDLSEAEKE---ILMAEFSLRHSRSS 332
Query: 173 FC 174
C
Sbjct: 333 IC 334
>ZFIN|ZDB-GENE-090313-346 [details] [associations]
symbol:tarbp1 "TAR (HIV-1) RNA binding protein 1"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 InterPro:IPR016024 Pfam:PF00588
ZFIN:ZDB-GENE-090313-346 SUPFAM:SSF48371 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 InterPro:IPR025806
GeneTree:ENSGT00390000003939 PROSITE:PS51624 EMBL:BX324188
IPI:IPI00961853 Ensembl:ENSDART00000113259 Uniprot:F1R356
Length = 1578
Score = 146 (56.5 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 46/144 (31%), Positives = 70/144 (48%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN--AFGSHGSTSHVNFRHFH----S 59
VV I K N+G L R+ FG ++L R N F + +S +
Sbjct: 1426 VVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQFQALSVSSELWLPMMEVKPAE 1485
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
LSD KS+ + GVE T N+ + + F + + LLGNE G+ A ++ D V
Sbjct: 1486 LSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVE 1545
Query: 120 IPQYGGGTASLNVTVAASIVLHHF 143
IPQ+G T SLNV V+A++++ +
Sbjct: 1546 IPQFGV-TRSLNVHVSAALLVWEY 1568
>TIGR_CMR|BA_0091 [details] [associations]
symbol:BA_0091 "RNA methyltransferase, TrmH family, group
3" species:198094 "Bacillus anthracis str. Ames" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00186
HOGENOM:HOG000218798 KO:K03218 OMA:NITDPRN HSSP:P39290
RefSeq:NP_842659.1 RefSeq:YP_016695.1 RefSeq:YP_026377.1
ProteinModelPortal:Q81VU9 IntAct:Q81VU9 DNASU:1088222
EnsemblBacteria:EBBACT00000010027 EnsemblBacteria:EBBACT00000017271
EnsemblBacteria:EBBACT00000021093 GeneID:1088222 GeneID:2814905
GeneID:2851380 KEGG:ban:BA_0091 KEGG:bar:GBAA_0091 KEGG:bat:BAS0091
ProtClustDB:CLSK872622 BioCyc:BANT260799:GJAJ-102-MONOMER
BioCyc:BANT261594:GJ7F-104-MONOMER Uniprot:Q81VU9
Length = 247
Score = 136 (52.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 41/142 (28%), Positives = 68/142 (47%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRHFHS 59
++++ I HN+G++ R+A A G +I+ RR A S G+ ++ +
Sbjct: 97 FLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTN 156
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
LS LK + I G + D K ++G+EG G+S E CDF +
Sbjct: 157 LSRTIDELKERGLWIAGTD-AKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLIT 215
Query: 120 IPQYGGGTASLNVTVAASIVLH 141
+P G T SLN +VAAS++++
Sbjct: 216 LPMVGKVT-SLNASVAASLLMY 236
>TIGR_CMR|CBU_0986 [details] [associations]
symbol:CBU_0986 "RNA methyltransferase, TrmH family, group
3" species:227377 "Coxiella burnetii RSA 493" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 OMA:IMGAEGK TIGRFAMs:TIGR00186 HOGENOM:HOG000218798
RefSeq:NP_819993.2 ProteinModelPortal:Q83CW6 SMR:Q83CW6
GeneID:1208881 KEGG:cbu:CBU_0986 PATRIC:17930695 KO:K03218
ProtClustDB:CLSK914460 BioCyc:CBUR227377:GJ7S-979-MONOMER
InterPro:IPR024915 Uniprot:Q83CW6
Length = 250
Score = 123 (48.4 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 42/141 (29%), Positives = 62/141 (43%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMIL-----VGRRDFNAFGSHGSTSHVNFRHFHSL 60
+++ + HN+G RSA AFGV +I VG + G+ F +L
Sbjct: 100 LILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNL 159
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
S +L+ + I G + + + + A +LG+EG GL E CDF I
Sbjct: 160 SRTIDWLQKEGVWIVGTAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQI 218
Query: 121 PQYGGGTASLNVTVAASIVLH 141
P G SLNV+VA I L+
Sbjct: 219 P-LRGSVESLNVSVACGICLY 238
>WB|WBGene00012864 [details] [associations]
symbol:Y45F3A.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588
Pfam:PF08032 SMART:SM00967 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 KO:K15507 eggNOG:COG0566
GeneTree:ENSGT00390000018761 EMBL:AL032621 PIR:T26946
RefSeq:NP_499333.1 HSSP:P39290 ProteinModelPortal:Q9XWY8 SMR:Q9XWY8
STRING:Q9XWY8 PaxDb:Q9XWY8 EnsemblMetazoa:Y45F3A.9 GeneID:3565184
KEGG:cel:CELE_Y45F3A.9 UCSC:Y45F3A.9 CTD:3565184 WormBase:Y45F3A.9
InParanoid:Q9XWY8 OMA:LCRYQVH NextBio:955513 Uniprot:Q9XWY8
Length = 294
Score = 124 (48.7 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 44/156 (28%), Positives = 71/156 (45%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAF------GSHGSTSHVNFRHFHS 59
+ V + N+G + RSA FG + LV R + S G+ H+ + F +
Sbjct: 134 IFVDKVLDPGNLGAIGRSAWYFGADGLGLVKGRGPKSITPAMIKSSCGALEHLPVQQFLN 193
Query: 60 LSDARVFLKSKD------CDICGVEITD-NAVDVTQHPFKKSTAFLLGNEGMGLSAKECE 112
++ R +K+ CD E +A + Q +K +LG+EG+G+S
Sbjct: 194 FNEFRDKIKAAGGELVATCDPGAAEKAGISAKSLDQWTPEKPVGIVLGDEGVGISRGILN 253
Query: 113 ICDFFVYI-P--QYGGGTASLNVTVAASIVLHHFGV 145
+CD + I P + G SLNV+V A I+LHH +
Sbjct: 254 LCDTVISISPVRKDGSNVTSLNVSVVAGILLHHISL 289
>UNIPROTKB|J9P5E1 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001537
InterPro:IPR016024 Pfam:PF00588 SUPFAM:SSF48371 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 InterPro:IPR025806
GeneTree:ENSGT00390000003939 EMBL:AAEX03002692 PROSITE:PS51624
EMBL:AAEX03002691 Ensembl:ENSCAFT00000045343 Uniprot:J9P5E1
Length = 1415
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 48/146 (32%), Positives = 72/146 (49%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGR---RDFNAFGSHGSTSHVNFRHFHSLSD 62
VV I K N+G L R+ FG S +I+ RD F S S S + +
Sbjct: 1261 VVASLIDKPTNLGGLCRTCEVFGASALIVDSLQCVRD-KQFQSL-SVSAEQWLPLVEVKP 1318
Query: 63 ARV--FLKSKDCD---ICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFF 117
++ FL+ K + + GVE T +VD+TQ+ F + + LLGNE G+ A + D
Sbjct: 1319 PQLIDFLQQKKAEGYTVIGVEQTAKSVDLTQYSFPERSLLLLGNEREGIPANLIQELDVC 1378
Query: 118 VYIPQYGGGTASLNVTVAASIVLHHF 143
V IPQ G SLNV V+ ++++ +
Sbjct: 1379 VEIPQQGI-IRSLNVHVSGALLIWEY 1403
>UNIPROTKB|F1PWU0 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001537
Pfam:PF00588 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 OMA:TVFRRDQ InterPro:IPR025806
GeneTree:ENSGT00390000003939 EMBL:AAEX03002692 PROSITE:PS51624
EMBL:AAEX03002691 Ensembl:ENSCAFT00000018299 Uniprot:F1PWU0
Length = 1435
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 48/146 (32%), Positives = 72/146 (49%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGR---RDFNAFGSHGSTSHVNFRHFHSLSD 62
VV I K N+G L R+ FG S +I+ RD F S S S + +
Sbjct: 1280 VVASLIDKPTNLGGLCRTCEVFGASALIVDSLQCVRD-KQFQSL-SVSAEQWLPLVEVKP 1337
Query: 63 ARV--FLKSKDCD---ICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFF 117
++ FL+ K + + GVE T +VD+TQ+ F + + LLGNE G+ A + D
Sbjct: 1338 PQLIDFLQQKKAEGYTVIGVEQTAKSVDLTQYSFPERSLLLLGNEREGIPANLIQELDVC 1397
Query: 118 VYIPQYGGGTASLNVTVAASIVLHHF 143
V IPQ G SLNV V+ ++++ +
Sbjct: 1398 VEIPQQGI-IRSLNVHVSGALLIWEY 1422
>FB|FBgn0038953 [details] [associations]
symbol:CG18596 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
EMBL:AE014297 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0566 GeneTree:ENSGT00390000003939
EMBL:AY069719 RefSeq:NP_651031.1 UniGene:Dm.1987 SMR:Q9VD22
MINT:MINT-1669476 EnsemblMetazoa:FBtr0084216 GeneID:42622
KEGG:dme:Dmel_CG18596 UCSC:CG18596-RA FlyBase:FBgn0038953
InParanoid:Q9VD22 OMA:MENLEEQ OrthoDB:EOG4F7M1M GenomeRNAi:42622
NextBio:829741 Uniprot:Q9VD22
Length = 1136
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 48/148 (32%), Positives = 70/148 (47%)
Query: 3 ESYVVVHNIAKRHNVGTLARSATAFGVSEMIL--VGRRDFNAFGSHGSTSH--VNFRHFH 58
E VV I K N+G LAR+ GV+ +IL + + + F + T+ +N +
Sbjct: 985 ELIVVASLIDKLPNLGGLARTCEVLGVNTLILGLKSQAEKSDFTNLSMTAEKTLNILEVN 1044
Query: 59 SLSDARVFLKSKDCD---ICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICD 115
S A FL K + I G E T ++ + F K + LLG+E G+ A D
Sbjct: 1045 PESLAG-FLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLD 1103
Query: 116 FFVYIPQYGGGTASLNVTVAASIVLHHF 143
+ V IPQYG SLNV VA S+ + +
Sbjct: 1104 YAVEIPQYGL-VRSLNVHVAGSLFIWEY 1130
>TIGR_CMR|BA_4805 [details] [associations]
symbol:BA_4805 "RNA methyltransferase, TrmH family"
species:198094 "Bacillus anthracis str. Ames" [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 HSSP:P39290 HOGENOM:HOG000218799 KO:K03437
OMA:AQGSHFH RefSeq:NP_847008.1 RefSeq:YP_021450.1
RefSeq:YP_030704.1 ProteinModelPortal:Q81L29 DNASU:1083938
EnsemblBacteria:EBBACT00000012902 EnsemblBacteria:EBBACT00000014455
EnsemblBacteria:EBBACT00000024420 GeneID:1083938 GeneID:2815769
GeneID:2851594 KEGG:ban:BA_4805 KEGG:bar:GBAA_4805 KEGG:bat:BAS4457
ProtClustDB:CLSK873510 BioCyc:BANT260799:GJAJ-4514-MONOMER
BioCyc:BANT261594:GJ7F-4667-MONOMER Uniprot:Q81L29
Length = 254
Score = 120 (47.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 42/144 (29%), Positives = 71/144 (49%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGS------HGSTSHVNFRHFH 58
++++ + N+GT+ R+A A G+ ++L G +A+ S GS H+
Sbjct: 107 FLLLDGLQDPGNLGTIIRTADAAGIHAVVL-GEGCVDAYNSKVLRSTQGSIFHLPIVK-G 164
Query: 59 SLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFV 118
+L + LK + + G + +N V + S A ++GNEG G+ + D +
Sbjct: 165 NLKEWVDKLKENNVPVYGTAL-ENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTDQNL 223
Query: 119 YIPQYGGGTASLNVTVAASIVLHH 142
YIP YGG SLNV VAA I+ ++
Sbjct: 224 YIPIYGGAE-SLNVAVAAGILTYY 246
>UNIPROTKB|F1RGW6 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 OMA:TVFRRDQ
InterPro:IPR025806 GeneTree:ENSGT00390000003939 PROSITE:PS51624
EMBL:CT737201 EMBL:CU329680 Ensembl:ENSSSCT00000011124
Uniprot:F1RGW6
Length = 1625
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 47/146 (32%), Positives = 71/146 (48%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGR---RDFNAFGSHGSTSHVNFRHFHSLSD 62
VV I K N+G L R+ FG S +++ RD F H S S + +
Sbjct: 1470 VVASLIDKPTNLGGLCRTCEVFGASALVVSSLQCIRD-KQF-QHLSVSAEQWLPLVEVKP 1527
Query: 63 ARV--FLKSKDCD---ICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFF 117
++ +L+ K + I GVE T +VD+TQ F + + LLGNE G+ A + D
Sbjct: 1528 PQLIDYLQEKKAEGYTIVGVEQTARSVDLTQFCFPEKSLLLLGNEREGIPANLIQQLDVC 1587
Query: 118 VYIPQYGGGTASLNVTVAASIVLHHF 143
V IPQ G SLNV V+ ++++ +
Sbjct: 1588 VEIPQQGI-IRSLNVHVSGALLIWEY 1612
>TIGR_CMR|GSU_1462 [details] [associations]
symbol:GSU_1462 "RNA methyltransferase, TrmH family, group
3" species:243231 "Geobacter sulfurreducens PCA" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0003723 GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00186 HOGENOM:HOG000218798
KO:K03218 OMA:NITDPRN RefSeq:NP_952513.1 ProteinModelPortal:Q74D57
GeneID:2686213 KEGG:gsu:GSU1462 PATRIC:22025767
ProtClustDB:CLSK828365 BioCyc:GSUL243231:GH27-1441-MONOMER
Uniprot:Q74D57
Length = 245
Score = 116 (45.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 41/141 (29%), Positives = 61/141 (43%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGS-----HGSTSHVNFRHFHSL 60
+V+ I HN+G L RSA G +I+ R S G+T + ++
Sbjct: 99 LVLDGIQDPHNLGALIRSAACAGAHGVIIPRDRAAGVTASVEKISAGATETIPVAQVTNV 158
Query: 61 SDARVFLKSKDCDICGVEITDNAVD-VTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
A LK + G D+A + H + ++G EG G+ + CDF V
Sbjct: 159 VQALETLKEEGFWAFGT--ADSAASSLYSHDLTGNVVIVIGGEGEGVRPLVRKKCDFLVA 216
Query: 120 IPQYGGGTASLNVTVAASIVL 140
IP GG +SLN +VA +VL
Sbjct: 217 IP-LKGGVSSLNASVAGGVVL 236
>UNIPROTKB|Q13395 [details] [associations]
symbol:TARBP1 "Probable methyltransferase TARBP1"
species:9606 "Homo sapiens" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] InterPro:IPR001537
InterPro:IPR016024 Pfam:PF00588 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0006357 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 EMBL:AL355472 eggNOG:COG0566 EMBL:U38847
EMBL:AL136124 IPI:IPI00298447 PIR:S62356 RefSeq:NP_005637.3
UniGene:Hs.498115 PDB:2HA8 PDBsum:2HA8 ProteinModelPortal:Q13395
SMR:Q13395 IntAct:Q13395 STRING:Q13395 PhosphoSite:Q13395
DMDM:74739787 PaxDb:Q13395 PRIDE:Q13395 DNASU:6894
Ensembl:ENST00000040877 GeneID:6894 KEGG:hsa:6894 UCSC:uc001hwd.3
CTD:6894 GeneCards:GC01M234527 HGNC:HGNC:11568 HPA:CAB020810
HPA:HPA024632 MIM:605052 neXtProt:NX_Q13395 PharmGKB:PA36333
HOGENOM:HOG000154511 HOVERGEN:HBG094026 InParanoid:Q13395
OMA:TVFRRDQ OrthoDB:EOG4S7JP4 PhylomeDB:Q13395 BindingDB:Q13395
ChEMBL:CHEMBL2807 ChiTaRS:TARBP1 EvolutionaryTrace:Q13395
GenomeRNAi:6894 NextBio:26945 Bgee:Q13395 CleanEx:HS_TARBP1
Genevestigator:Q13395 InterPro:IPR025806 Uniprot:Q13395
Length = 1621
Score = 125 (49.1 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN--AFGSHGSTSHVNFRHFHSLSDA 63
VV I K N+G L R+ FG S +++ + + F H S S + +
Sbjct: 1466 VVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQF-QHLSVSAEQWLPLVEVKPP 1524
Query: 64 RV--FLKSKDCD---ICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFV 118
++ +L+ K + I GVE T ++D+TQ+ F + + LLGNE G+ A + D V
Sbjct: 1525 QLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCV 1584
Query: 119 YIPQYGGGTASLNVTVAASIVLHHF 143
IPQ G SLNV V+ ++++ +
Sbjct: 1585 EIPQQGI-IRSLNVHVSGALLIWEY 1608
>UNIPROTKB|P94978 [details] [associations]
symbol:tsnR "TrmH family RNA methyltransferase"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR001537
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0005886 GenomeReviews:AL123456_GR EMBL:BX842577 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 HOGENOM:HOG000218799
KO:K03437 EMBL:CP003248 PIR:G70619 RefSeq:NP_216160.1
RefSeq:YP_006515035.1 ProteinModelPortal:P94978 SMR:P94978
PRIDE:P94978 EnsemblBacteria:EBMYCT00000002199 GeneID:13316425
GeneID:885163 KEGG:mtu:Rv1644 KEGG:mtv:RVBD_1644 PATRIC:18152199
TubercuList:Rv1644 OMA:AQGSHFH ProtClustDB:CLSK791298
Uniprot:P94978
Length = 260
Score = 115 (45.5 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 43/141 (30%), Positives = 63/141 (44%)
Query: 7 VVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAF---GSHGSTSHVNFRHFHSLS 61
V I + N GT+ R A A G + +IL GR +N S GS + +
Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVAPDVG 171
Query: 62 DARVFLKSKDCDICGVEIT-DNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
A L++ + + + A+D + TA+L G E GLSA+ + D V+I
Sbjct: 172 AAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVHI 231
Query: 121 PQYGGGTASLNVTVAASIVLH 141
GG SLNV AA+I L+
Sbjct: 232 LM-SGGAESLNVAAAAAICLY 251
>UNIPROTKB|F1NX84 [details] [associations]
symbol:MRM1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00390000018761
OMA:LCRYQVH EMBL:AADN02025757 EMBL:AADN02025758 IPI:IPI00812536
Ensembl:ENSGALT00000008680 Uniprot:F1NX84
Length = 317
Score = 116 (45.9 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 42/151 (27%), Positives = 66/151 (43%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD--FNAFGSHGSTSHVNFRHFHSLSD 62
++ + I N+G L RSA GV ++ R S S+ + +S D
Sbjct: 156 WLALEQIQDPMNLGALLRSAYFLGVDRVVTSQRNSCPLTPTVSKASSGAMEVFDVYSTDD 215
Query: 63 ARVFLKSKDCD---ICGV----EITDNA--VDVTQHPFKKSTAFLLGNEGMGLSAKECEI 113
R FLK+K + + G E +N + + + K ++G+EG GLS + +
Sbjct: 216 LRSFLKAKAAEGWEVVGTVSQSETVENVPVISCLEFRWNKPIILVIGSEGDGLSLETQLL 275
Query: 114 CDFFVYIPQYGG---GTASLNVTVAASIVLH 141
C + IP G SLNV+VA I+LH
Sbjct: 276 CHQMLVIPSGRALHPGIESLNVSVATGILLH 306
>UNIPROTKB|F1N6T6 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 OMA:TVFRRDQ
InterPro:IPR025806 GeneTree:ENSGT00390000003939 EMBL:DAAA02061448
EMBL:DAAA02061449 EMBL:DAAA02061450 IPI:IPI00705077
Ensembl:ENSBTAT00000005936 PROSITE:PS51624 Uniprot:F1N6T6
Length = 1313
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 44/146 (30%), Positives = 72/146 (49%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGR---RDFNAFGSHGSTSHVNFRHFHSLSD 62
VV I K N+G L R+ FG + +++ RD F H S S + +
Sbjct: 1158 VVASLIDKPTNLGGLCRTCEVFGAAALVMGSLQCVRD-KQF-QHLSVSAEQWLPLVEVKP 1215
Query: 63 ARV--FLKSKDCD---ICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFF 117
++ +L+ K + I GVE T ++D+T++ F + + LLGNE G+ A + D
Sbjct: 1216 PQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQLDVC 1275
Query: 118 VYIPQYGGGTASLNVTVAASIVLHHF 143
V IPQ G SLNV V+ ++++ +
Sbjct: 1276 VEIPQQGI-IRSLNVHVSGALLIWEY 1300
>TIGR_CMR|SPO_1150 [details] [associations]
symbol:SPO_1150 "RNA methyltransferase, TrmH family, group
3" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00186 KO:K03218
HOGENOM:HOG000218801 OMA:MITIPMM RefSeq:YP_166400.1
ProteinModelPortal:Q5LUA5 GeneID:3195708 KEGG:sil:SPO1150
PATRIC:23375603 ProtClustDB:CLSK933444 Uniprot:Q5LUA5
Length = 257
Score = 113 (44.8 bits), Expect = 0.00012, P = 0.00012
Identities = 43/145 (29%), Positives = 65/145 (44%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNA--FGS-----HGSTSHVNFRHFH 58
+++ + HNVG + RSA G S +I G R +A G+ G+ +
Sbjct: 111 ILLDRVTDPHNVGAILRSAEVLGASAVI--GTRHHSAPETGALAKTASGALERQPYLRMR 168
Query: 59 SLSDARVFLKSKDCDICGV--EITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDF 116
+L+DA L+ + G+ E ++ + A +LG EG GL K E D
Sbjct: 169 NLADAITELQGMGYLVLGLDGEASETIEAALAGQTDRPVALVLGAEGPGLRQKTKETVDK 228
Query: 117 FVYIPQYGGGTASLNVTVAASIVLH 141
V I GG SLNV+ AA+I L+
Sbjct: 229 LVKIDA-AGGFGSLNVSNAAAIALY 252
>UNIPROTKB|P63177 [details] [associations]
symbol:rlmB "23S rRNA 2'-O-ribose G2251 methyltransferase
monomer" species:83333 "Escherichia coli K-12" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0070039 "rRNA (guanosine-2'-O-)-methyltransferase activity"
evidence=IMP] [GO:0000453 "enzyme-directed rRNA 2'-O-methylation"
evidence=IMP] HAMAP:MF_01887 InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 EMBL:U14003 eggNOG:COG0566
OMA:IMGAEGK TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
InterPro:IPR024915 PIR:S56405 RefSeq:NP_418601.1 RefSeq:YP_492322.1
PDB:1GZ0 PDBsum:1GZ0 ProteinModelPortal:P63177 SMR:P63177
DIP:DIP-47866N IntAct:P63177 PaxDb:P63177 PRIDE:P63177
EnsemblBacteria:EBESCT00000002779 EnsemblBacteria:EBESCT00000017925
GeneID:12932817 GeneID:948694 KEGG:ecj:Y75_p4066 KEGG:eco:b4180
PATRIC:32123935 EchoBASE:EB2376 EcoGene:EG12483
ProtClustDB:PRK11181 BioCyc:EcoCyc:G7845-MONOMER
BioCyc:ECOL316407:JW4138-MONOMER BioCyc:MetaCyc:G7845-MONOMER
EvolutionaryTrace:P63177 Genevestigator:P63177 GO:GO:0070039
GO:GO:0000453 Uniprot:P63177
Length = 243
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 42/142 (29%), Positives = 63/142 (44%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD--FNAFGSH---GSTSHVNFRHFHSL 60
+++ + HN+G RSA A GV +I+ R NA G+ V +L
Sbjct: 98 LILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNL 157
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKS--TAFLLGNEGMGLSAKECEICDFFV 118
+ L+ ++ I G T D T + K + A ++G EG G+ E CD +
Sbjct: 158 ARTMRMLQEENIWIVG---TAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELI 214
Query: 119 YIPQYGGGTASLNVTVAASIVL 140
IP G +SLNV+VA I L
Sbjct: 215 SIPM-AGSVSSLNVSVATGICL 235
>TIGR_CMR|SO_3934 [details] [associations]
symbol:SO_3934 "RNA methyltransferase, TrmH family, group
3" species:211586 "Shewanella oneidensis MR-1" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 OMA:IMGAEGK TIGRFAMs:TIGR00186 HOGENOM:HOG000218798
KO:K03218 InterPro:IPR024915 ProtClustDB:PRK11181
RefSeq:NP_719465.1 ProteinModelPortal:Q8EAG8 SMR:Q8EAG8
GeneID:1171572 KEGG:son:SO_3934 PATRIC:23527546 Uniprot:Q8EAG8
Length = 246
Score = 111 (44.1 bits), Expect = 0.00020, P = 0.00020
Identities = 41/140 (29%), Positives = 61/140 (43%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMIL-----VGRRDFNAFGSHGSTSHVNFRHFHSL 60
+++ + HN+G R+A A GV +I+ VG + + G+ V +L
Sbjct: 100 LILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNL 159
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
+ L+ K I G + ++ Q K A +G EG GL E CD V I
Sbjct: 160 ARTMRHLQEKGVWIVGTA-GEADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSI 218
Query: 121 PQYGGGTASLNVTVAASIVL 140
P G +SLNV+VA I L
Sbjct: 219 PM-SGSVSSLNVSVATGICL 237
>TIGR_CMR|NSE_0262 [details] [associations]
symbol:NSE_0262 "RNA methyltransferase, TrmH family, group
3" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0008173 "RNA methyltransferase activity" evidence=ISS]
[GO:0009451 "RNA modification" evidence=ISS] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0003723 GO:GO:0006396 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 TIGRFAMs:TIGR00186 KO:K03218 RefSeq:YP_506155.1
ProteinModelPortal:Q2GEE1 STRING:Q2GEE1 GeneID:3931505
KEGG:nse:NSE_0262 PATRIC:22680615 HOGENOM:HOG000218801 OMA:AKVRPIF
ProtClustDB:CLSK2527754 BioCyc:NSEN222891:GHFU-291-MONOMER
Uniprot:Q2GEE1
Length = 243
Score = 110 (43.8 bits), Expect = 0.00025, P = 0.00025
Identities = 38/144 (26%), Positives = 66/144 (45%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRHFHSL 60
+++ +I N+G + RS+ AFGV +++ R + A + G+ + +L
Sbjct: 97 IILDSITDPFNIGNILRSSKAFGVDALVVKERHSPSETSVIAKTASGALESIPVCTIANL 156
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
++A L+ C +T+ F AF+LG+EG G+S CD + I
Sbjct: 157 TNAVKILQENGY-FCYALDGGARSKLTEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSI 215
Query: 121 PQYGGGTA-SLNVTVAASIVLHHF 143
P Y S+NV+ AA+I + F
Sbjct: 216 PMYSDKNFDSINVSNAAAIAMFRF 239
>UNIPROTKB|F1NP06 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 OMA:TVFRRDQ
InterPro:IPR025806 GeneTree:ENSGT00390000003939 PROSITE:PS51624
EMBL:AADN02051900 EMBL:AADN02051901 EMBL:AADN02051902
IPI:IPI00583004 Ensembl:ENSGALT00000017913 Uniprot:F1NP06
Length = 1311
Score = 119 (46.9 bits), Expect = 0.00027, P = 0.00027
Identities = 44/146 (30%), Positives = 71/146 (48%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDF---NAFGSHGSTSHVNFRHFHSLSD 62
VV I K N+G L R++ FG S ++ VG + F H S S + +
Sbjct: 1157 VVASLIDKPTNLGGLCRTSEIFGASALV-VGSLHYVQDKQF-QHLSVSAEQWLPLVEVKP 1214
Query: 63 ARV--FLKSKDCD---ICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFF 117
+++ +L+ K + GVE T + D+T++ F + + LLGNE G+ A D
Sbjct: 1215 SQLVDYLQQKKTEGYTAIGVEQTAKSYDLTEYCFPEKSLLLLGNEHEGIPANLIHHLDVC 1274
Query: 118 VYIPQYGGGTASLNVTVAASIVLHHF 143
V IPQ G SLNV V+ ++++ +
Sbjct: 1275 VEIPQQGI-IRSLNVHVSGALLIWEY 1299
>UNIPROTKB|E2RN23 [details] [associations]
symbol:MRM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 GO:GO:0005739 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
GeneTree:ENSGT00390000018761 OMA:LIGFHAV EMBL:AAEX03006610
Ensembl:ENSCAFT00000028320 Uniprot:E2RN23
Length = 346
Score = 109 (43.4 bits), Expect = 0.00070, P = 0.00070
Identities = 45/154 (29%), Positives = 68/154 (44%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD--FNAFGSHGSTSHVNFRHFHSLSD 62
++V+ + N+G + RSA GV ++I GR S S + S D
Sbjct: 149 WLVLERLQDPRNLGAVLRSAHFLGVDKVITSGRNSCPLTPVVSKASAGAMEVMDVFSTDD 208
Query: 63 ARVFLKSKDCD---ICGV------EITDNAVDVT---QHPFKKSTAFLLGNEGMGLSAKE 110
FL++K + G E++ + +T + + + T +LGNEG GLS
Sbjct: 209 LAGFLQAKARQGWLVAGTVGCPRPEMSSE-IPITSCLEFLWDQPTLLVLGNEGSGLSQAV 267
Query: 111 CEICDFFVYI-P--QYGGGTASLNVTVAASIVLH 141
C + I P Q G SLNV+VAA I+LH
Sbjct: 268 QASCQLLLTILPGRQLPPGLESLNVSVAAGILLH 301
>DICTYBASE|DDB_G0277479 [details] [associations]
symbol:DDB_G0277479 "rRNA methyltransferase,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0008173
"RNA methyltransferase activity" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
dictyBase:DDB_G0277479 GO:GO:0005739 GenomeReviews:CM000151_GR
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000020 GO:GO:0008173
GO:GO:0001510 KO:K15507 RefSeq:XP_642670.1
ProteinModelPortal:Q76NT0 EnsemblProtists:DDB0169271 GeneID:8621087
KEGG:ddi:DDB_G0277479 eggNOG:COG0566 Uniprot:Q76NT0
Length = 531
Score = 111 (44.1 bits), Expect = 0.00078, P = 0.00078
Identities = 38/149 (25%), Positives = 65/149 (43%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD--FNAFGSHGSTSHVNFRHFHSLSD 62
++V+ + NVG + R+ + F + +++ + S S+ +
Sbjct: 375 WLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGACESFVINRTES 434
Query: 63 ARVFLKSKD---CDICGVEITD-N----AVDVTQHPFKKSTAFLLGNEGMGLSAKECEIC 114
FLKS ++ G + D N +D+ Q + T +LGNEG GL EIC
Sbjct: 435 IEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTILILGNEGFGLKPSVLEIC 494
Query: 115 DFFVYIPQYGGGTA--SLNVTVAASIVLH 141
+ + I GG SLNV+V + I++H
Sbjct: 495 NKTIKI--VGGNYKIDSLNVSVTSGILIH 521
>UNIPROTKB|Q9KNY2 [details] [associations]
symbol:rlmB "23S rRNA (guanosine-2'-O-)-methyltransferase
RlmB" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009451 "RNA modification" evidence=ISS] HAMAP:MF_01887
InterPro:IPR001537 InterPro:IPR004441 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0566 TIGRFAMs:TIGR00186 KO:K03218
InterPro:IPR024915 ProtClustDB:PRK11181 PIR:B82055
RefSeq:NP_232226.1 ProteinModelPortal:Q9KNY2 SMR:Q9KNY2
DNASU:2615615 GeneID:2615615 KEGG:vch:VC2598 PATRIC:20084222
OMA:SARDTHY Uniprot:Q9KNY2
Length = 247
Score = 106 (42.4 bits), Expect = 0.00081, P = 0.00081
Identities = 39/140 (27%), Positives = 61/140 (43%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD--FNAFGSH---GSTSHVNFRHFHSL 60
+V+ + HN+G R+A A GV+ +I+ + A S G+ V +L
Sbjct: 99 LVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNL 158
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
+ L+ K G + D+ Q S A ++G EG G+ E CD + I
Sbjct: 159 ARTMRALQEKGVWFVGTA-GEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKI 217
Query: 121 PQYGGGTASLNVTVAASIVL 140
P G +SLNV+VA + L
Sbjct: 218 PM-AGSVSSLNVSVACGVCL 236
>TIGR_CMR|VC_2598 [details] [associations]
symbol:VC_2598 "RNA methyltransferase, TrmH family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0009451 "RNA
modification" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 TIGRFAMs:TIGR00186 KO:K03218 InterPro:IPR024915
ProtClustDB:PRK11181 PIR:B82055 RefSeq:NP_232226.1
ProteinModelPortal:Q9KNY2 SMR:Q9KNY2 DNASU:2615615 GeneID:2615615
KEGG:vch:VC2598 PATRIC:20084222 OMA:SARDTHY Uniprot:Q9KNY2
Length = 247
Score = 106 (42.4 bits), Expect = 0.00081, P = 0.00081
Identities = 39/140 (27%), Positives = 61/140 (43%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD--FNAFGSH---GSTSHVNFRHFHSL 60
+V+ + HN+G R+A A GV+ +I+ + A S G+ V +L
Sbjct: 99 LVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNL 158
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
+ L+ K G + D+ Q S A ++G EG G+ E CD + I
Sbjct: 159 ARTMRALQEKGVWFVGTA-GEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKI 217
Query: 121 PQYGGGTASLNVTVAASIVL 140
P G +SLNV+VA + L
Sbjct: 218 PM-AGSVSSLNVSVACGVCL 236
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.134 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 217 205 0.00096 111 3 11 22 0.46 32
31 0.47 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 599 (64 KB)
Total size of DFA: 164 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.09u 0.11s 16.20t Elapsed: 00:00:01
Total cpu time: 16.10u 0.11s 16.21t Elapsed: 00:00:01
Start: Fri May 10 22:03:48 2013 End: Fri May 10 22:03:49 2013