BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040494
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0AGJ4|TRMH_SHIFL tRNA (guanosine(18)-2'-O)-methyltransferase OS=Shigella flexneri
GN=trmH PE=3 SV=1
Length = 229
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILV---GRRDFNAFGSHGSTSHVNFRHFHSLSD 62
V + + K HNV + R+A A GV E+ V R A + GS S V + ++ D
Sbjct: 22 VCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGD 81
Query: 63 ARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQ 122
A LK + I ++DNAVD + + + T L+G E G++ + + D + IP
Sbjct: 82 AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 141
Query: 123 YGGGTASLNVTVAASIVLH 141
G SLNV+VA++++L+
Sbjct: 142 I-GMVQSLNVSVASALILY 159
>sp|P0AGJ2|TRMH_ECOLI tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli
(strain K12) GN=trmH PE=1 SV=1
Length = 229
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILV---GRRDFNAFGSHGSTSHVNFRHFHSLSD 62
V + + K HNV + R+A A GV E+ V R A + GS S V + ++ D
Sbjct: 22 VCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGD 81
Query: 63 ARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQ 122
A LK + I ++DNAVD + + + T L+G E G++ + + D + IP
Sbjct: 82 AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 141
Query: 123 YGGGTASLNVTVAASIVLH 141
G SLNV+VA++++L+
Sbjct: 142 I-GMVQSLNVSVASALILY 159
>sp|P0AGJ3|TRMH_ECO57 tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli
O157:H7 GN=trmH PE=3 SV=1
Length = 229
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILV---GRRDFNAFGSHGSTSHVNFRHFHSLSD 62
V + + K HNV + R+A A GV E+ V R A + GS S V + ++ D
Sbjct: 22 VCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGD 81
Query: 63 ARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQ 122
A LK + I ++DNAVD + + + T L+G E G++ + + D + IP
Sbjct: 82 AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 141
Query: 123 YGGGTASLNVTVAASIVLH 141
G SLNV+VA++++L+
Sbjct: 142 I-GMVQSLNVSVASALILY 159
>sp|Q4L3J1|TRMHL_STAHJ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2477 PE=3 SV=1
Length = 249
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 7/145 (4%)
Query: 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRH 56
+ + V++ + HN+G++ R+A A GV +I+ RR A S G+ HV
Sbjct: 94 LSTVVILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMR 153
Query: 57 FHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDF 116
+L+ LK + G E DNA D A ++G+EG G+S + CDF
Sbjct: 154 VTNLAKTIDELKEHGYWVAGAE-ADNATDYRDMAADMPLAIVIGSEGQGMSRLVKDKCDF 212
Query: 117 FVYIPQYGGGTASLNVTVAASIVLH 141
++ IP G SLN +VAAS++++
Sbjct: 213 YIKIPMV-GHVNSLNASVAASLMMY 236
>sp|Q49V41|TRMHL_STAS1 Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP2224 PE=3 SV=1
Length = 249
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRH 56
+ + +++ + HN+G++ R+A A GV +I+ RR A S G+ H+
Sbjct: 94 LSTVLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMR 153
Query: 57 FHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDF 116
+L++ LK I G E +N+ D + ++G+EG G+S E CDF
Sbjct: 154 VTNLANTIETLKDNGYWIVGTE-AENSTDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDF 212
Query: 117 FVYIPQYGGGTASLNVTVAASIVLHHFGVWAGFSERTRDGNK 158
++ IP G SLN +VAAS++++ F +R G+K
Sbjct: 213 YINIPMV-GHVNSLNASVAASLMMYEV-----FRKRNYIGDK 248
>sp|Q7A1Q9|TRMHL_STAAW Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MW2) GN=MW0487 PE=3 SV=1
Length = 248
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRH 56
+ + +++ + HN+G++ R+A A GV +I+ RR A S G+ HV
Sbjct: 94 LSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIR 153
Query: 57 FHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDF 116
+L+ LK + G E +NA D S A ++G+EG G+S + CDF
Sbjct: 154 VTNLAKTIDELKDNGFWVAGTE-ANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDF 212
Query: 117 FVYIPQYGGGTASLNVTVAASIVLH 141
++ IP G SLN +VAAS++++
Sbjct: 213 YIKIPMV-GHVNSLNASVAASLMMY 236
>sp|Q6GBV6|TRMHL_STAAS Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MSSA476) GN=SAS0489 PE=3 SV=1
Length = 248
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRH 56
+ + +++ + HN+G++ R+A A GV +I+ RR A S G+ HV
Sbjct: 94 LSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIR 153
Query: 57 FHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDF 116
+L+ LK + G E +NA D S A ++G+EG G+S + CDF
Sbjct: 154 VTNLAKTIDELKDNGFWVAGTE-ANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDF 212
Query: 117 FVYIPQYGGGTASLNVTVAASIVLH 141
++ IP G SLN +VAAS++++
Sbjct: 213 YIKIPMV-GHVNSLNASVAASLMMY 236
>sp|Q6GJD7|TRMHL_STAAR Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MRSA252) GN=SAR0535 PE=3 SV=1
Length = 248
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRH 56
+ + +++ + HN+G++ R+A A GV +I+ RR A S G+ HV
Sbjct: 94 LSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIR 153
Query: 57 FHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDF 116
+L+ LK + G E +NA D S A ++G+EG G+S + CDF
Sbjct: 154 VTNLAKTIDELKDNGFWVAGTE-ANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDF 212
Query: 117 FVYIPQYGGGTASLNVTVAASIVLH 141
++ IP G SLN +VAAS++++
Sbjct: 213 YIKIPMV-GHVNSLNASVAASLMMY 236
>sp|Q7A794|TRMHL_STAAN Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain N315) GN=SA0490 PE=1 SV=1
Length = 248
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRH 56
+ + +++ + HN+G++ R+A A GV +I+ RR A S G+ HV
Sbjct: 94 LSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIR 153
Query: 57 FHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDF 116
+L+ LK + G E +NA D S A ++G+EG G+S + CDF
Sbjct: 154 VTNLAKTIDELKDNGFWVAGTE-ANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDF 212
Query: 117 FVYIPQYGGGTASLNVTVAASIVLH 141
++ IP G SLN +VAAS++++
Sbjct: 213 YIKIPMV-GHVNSLNASVAASLMMY 236
>sp|Q99W72|TRMHL_STAAM Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=SAV0531 PE=1 SV=1
Length = 248
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRH 56
+ + +++ + HN+G++ R+A A GV +I+ RR A S G+ HV
Sbjct: 94 LSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIR 153
Query: 57 FHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDF 116
+L+ LK + G E +NA D S A ++G+EG G+S + CDF
Sbjct: 154 VTNLAKTIDELKDNGFWVAGTE-ANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDF 212
Query: 117 FVYIPQYGGGTASLNVTVAASIVLH 141
++ IP G SLN +VAAS++++
Sbjct: 213 YIKIPMV-GHVNSLNASVAASLMMY 236
>sp|Q9AGT0|TRMHL_STAAE Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Newman) GN=NWMN_0494 PE=3 SV=1
Length = 248
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 7/143 (4%)
Query: 4 SYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRHFH 58
+ +++ + HN+G++ R+A A GV +I+ RR A S G+ HV
Sbjct: 96 TVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVT 155
Query: 59 SLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFV 118
+L+ LK + G E +NA D S A ++G+EG G+S + CDF++
Sbjct: 156 NLAKTIDELKDNGFWVAGTE-ANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYI 214
Query: 119 YIPQYGGGTASLNVTVAASIVLH 141
IP G SLN +VAAS++++
Sbjct: 215 KIPMV-GHVNSLNASVAASLMMY 236
>sp|Q5HIE3|TRMHL_STAAC Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain COL) GN=SACOL0578 PE=3 SV=1
Length = 248
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 7/143 (4%)
Query: 4 SYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRHFH 58
+ +++ + HN+G++ R+A A GV +I+ RR A S G+ HV
Sbjct: 96 TVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVT 155
Query: 59 SLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFV 118
+L+ LK + G E +NA D S A ++G+EG G+S + CDF++
Sbjct: 156 NLAKTIDELKDNGFWVAGTE-ANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYI 214
Query: 119 YIPQYGGGTASLNVTVAASIVLH 141
IP G SLN +VAAS++++
Sbjct: 215 KIPMV-GHVNSLNASVAASLMMY 236
>sp|Q8CTT9|TRMHL_STAES Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_0294 PE=3 SV=2
Length = 249
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 4 SYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRHFH 58
+ +++ + HN+G++ R+A A GV +I+ RR A S G+ HV
Sbjct: 96 TVIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVT 155
Query: 59 SLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFV 118
+LS LK I G E +NA D S ++G+EG G+S + CDF +
Sbjct: 156 NLSKTIDELKDNGFWIAGTE-ANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHI 214
Query: 119 YIPQYGGGTASLNVTVAASIVLH 141
IP G SLN +VAAS++++
Sbjct: 215 KIPMV-GHVNSLNASVAASLMMY 236
>sp|Q5HRM1|TRMHL_STAEQ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP0172 PE=3
SV=1
Length = 249
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 4 SYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRHFH 58
+ +++ + HN+G++ R+A A GV +I+ RR A S G+ HV
Sbjct: 96 TVIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVT 155
Query: 59 SLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFV 118
+LS LK I G E +NA D S ++G+EG G+S + CDF +
Sbjct: 156 NLSKTIDELKDNGFWIAGTE-ANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHI 214
Query: 119 YIPQYGGGTASLNVTVAASIVLH 141
IP G SLN +VAAS++++
Sbjct: 215 KIPMV-GHVNSLNASVAASLMMY 236
>sp|P74328|Y955_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr0955
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0955 PE=3 SV=1
Length = 384
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGS-----HGSTSHVNFRHFHSL 60
+++ +I HN+G + R+A AFG M+L RR + G+ H +L
Sbjct: 220 IIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRVAGITSTVMKVAAGALEHFPVARVVNL 279
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
S A LK I G + + Q ++ ++G+EG GLS + CD + I
Sbjct: 280 SRALETLKESGFWIYGT-VAGKQTALHQADLREPMGLVIGSEGEGLSLLTQKHCDHLITI 338
Query: 121 PQYGGGTASLNVTVAASIVLHHFGVWAGFSERT 153
P G T SLN +VAA+I L+ GF T
Sbjct: 339 P-LAGKTPSLNASVAAAISLYEIFRQRGFDRPT 370
>sp|P94538|YSGA_BACSU Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus
subtilis (strain 168) GN=ysgA PE=3 SV=2
Length = 248
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 16 NVGTLARSATAFGVSEMILVGRRDFNAFG------SHGSTSHVNF--RHFHSLSDARVFL 67
N+GT+ R+A A G+ ++L G +AF + GS H+ R+ S D L
Sbjct: 117 NLGTMIRTADAAGLDAVVL-GDGTADAFNGKTLRSAQGSHFHIPVVRRNLPSYVDE---L 172
Query: 68 KSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGT 127
K++ + G + N + P +S A ++GNEG G+ A E D +Y+P YG
Sbjct: 173 KAEGVKVYGTAL-QNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTDLNLYVPLYGQAE 231
Query: 128 ASLNVTVAASIVLHHF 143
SLNV VAA+I+++H
Sbjct: 232 -SLNVAVAAAILVYHL 246
>sp|Q9JUU8|RLMB_NEIMA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rlmB PE=3 SV=2
Length = 250
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD--FNAFGSH---GSTSHVNFRHFHSL 60
+++ I HN+G R+A A GV +I + NA S G+ V + +L
Sbjct: 99 LILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNL 158
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
+ LK I G ++ NA D+ S A+++GNEG G+ E CD V I
Sbjct: 159 ARTLRELKEYGIWIIGTDMGGNA-DLYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSI 217
Query: 121 PQYGGGTASLNVTVAASIVL 140
P + G S+NV+V+A +VL
Sbjct: 218 PMF-GTVESMNVSVSAGMVL 236
>sp|O51081|Y052_BORBU Putative tRNA/rRNA methyltransferase BB_0052 OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=BB_0052 PE=3 SV=1
Length = 218
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 7 VVHNIAKRHNVGTLARSATAFGVSEMILVGRRD---FNAFGSHGSTSHVNFRHFHSLSDA 63
V+ +I + N R+ G+S++ ++ +++ N + GS+ +N + + A
Sbjct: 38 VLEDIFQSQNASATIRTGEILGLSDVHVIEKKNKHTLNPDVTLGSSQWINLNKYKNAKFA 97
Query: 64 RVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQY 123
LKS I + ++++ A G E GLSA+ D +V IP Y
Sbjct: 98 IDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMY 157
Query: 124 GGGTASLNVTVAASIVLHHF 143
G T S N++VA +IV++
Sbjct: 158 -GFTQSYNISVAVAIVMYSL 176
>sp|Q83CW6|RLMB_COXBU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=rlmB
PE=3 SV=1
Length = 250
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMIL-----VGRRDFNAFGSHGSTSHVNFRHFHS 59
+++ + HN+G RSA AFGV +I VG + G+ F +
Sbjct: 99 LLILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTN 158
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
LS +L+ + I G + + + + A +LG+EG GL E CDF
Sbjct: 159 LSRTIDWLQKEGVWIVGTAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQ 217
Query: 120 IPQYGGGTASLNVTVAASIVLHHF 143
IP G SLNV+VA I L+
Sbjct: 218 IP-LRGSVESLNVSVACGICLYEV 240
>sp|Q06753|YACO_BACSU Putative TrmH family tRNA/rRNA methyltransferase YacO OS=Bacillus
subtilis (strain 168) GN=yacO PE=3 SV=2
Length = 249
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN-----AFGSHGSTSHVNFRHFHS 59
++++ + HN+G++ R+A A G +++ RR A S G+ H+ +
Sbjct: 99 FLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTN 158
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
L+ +K + + G + + D A ++G+EG G+ E CDF +
Sbjct: 159 LARTLEEMKERGIWVVGTDASARE-DFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIK 217
Query: 120 IPQYGGGTASLNVTVAASIVLHH 142
+P G SLN +VAA ++++
Sbjct: 218 LP-MAGKVTSLNASVAAGLLMYE 239
>sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase OS=Aquifex aeolicus
(strain VF5) GN=trmH PE=1 SV=1
Length = 211
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 10 NIAKRHNVGTLARSATAFGVSEMILV---GRR-DFNAFGSHGSTSHVNFRHFHSLSDARV 65
N+ HN + R+ A GV + G++ N + GS V + +
Sbjct: 32 NVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQGSHKWVFIEKVDNPVQKLL 91
Query: 66 FLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGG 125
K++ I ++ +V+ + + K T ++GNE G+S + EI D + IP YG
Sbjct: 92 EFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGM 151
Query: 126 GTASLNVTVAASIVLHH 142
SLNV+VA I+L+
Sbjct: 152 A-QSLNVSVATGIILYE 167
>sp|Q7VTK4|RLMB_BORPE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Bordetella
pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
GN=rlmB PE=3 SV=1
Length = 245
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD----FNAFGSH---GSTSHVNFRHF 57
+++ + HN+G R+A A GV +I RD NA G+ V +
Sbjct: 98 LLILDGVTDPHNLGACLRTADAAGVHAVI--APRDRAVGLNATVQRVACGAADTVPYLTV 155
Query: 58 HSLSDARVFLKSKDCDICGVEITDNAVDVTQHPF--KKSTAFLLGNEGMGLSAKECEICD 115
+L+ LK +D + G TD+ + H ++S A+++G EG G+ E CD
Sbjct: 156 TNLARTMRELKERDVWLVG---TDDQAGESMHQVDARRSMAWVMGAEGEGMRRLTRETCD 212
Query: 116 FFVYIPQYGGGTASLNVTVAASIVLHH 142
V IP G SLNV+VA+++ L+
Sbjct: 213 QLVRIPML-GSVESLNVSVASAVCLYE 238
>sp|Q7W7I7|RLMB_BORPA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=rlmB PE=3 SV=1
Length = 245
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD----FNAFGSH---GSTSHVNFRHF 57
+++ + HN+G R+A A GV +I RD NA G+ V +
Sbjct: 98 LLILDGVTDPHNLGACLRTADAAGVHAVI--APRDRAVGLNATVQRVACGAADTVPYLTV 155
Query: 58 HSLSDARVFLKSKDCDICGVEITDNAVDVTQHPF--KKSTAFLLGNEGMGLSAKECEICD 115
+L+ LK +D + G TD+ + H ++S A+++G EG G+ E CD
Sbjct: 156 TNLARTMRELKERDVWLVG---TDDQAGESMHQVDARRSMAWVMGAEGEGMRRLTRETCD 212
Query: 116 FFVYIPQYGGGTASLNVTVAASIVLHH 142
V IP G SLNV+VA+++ L+
Sbjct: 213 QLVRIPML-GSVESLNVSVASAVCLYE 238
>sp|Q7WKX5|RLMB_BORBR 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=rlmB PE=3 SV=1
Length = 245
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD----FNAFGSH---GSTSHVNFRHF 57
+++ + HN+G R+A A GV +I RD NA G+ V +
Sbjct: 98 LLILDGVTDPHNLGACLRTADAAGVHAVI--APRDRAVGLNATVQRVACGAADTVPYLTV 155
Query: 58 HSLSDARVFLKSKDCDICGVEITDNAVDVTQHPF--KKSTAFLLGNEGMGLSAKECEICD 115
+L+ LK +D + G TD+ + H ++S A+++G EG G+ E CD
Sbjct: 156 TNLARTMRELKERDVWLVG---TDDQAGESMHQVDARRSMAWVMGAEGEGMRRLTRETCD 212
Query: 116 FFVYIPQYGGGTASLNVTVAASIVLHH 142
V IP G SLNV+VA+++ L+
Sbjct: 213 QLVRIPML-GSVESLNVSVASAVCLYE 238
>sp|Q13395|TARB1_HUMAN Probable methyltransferase TARBP1 OS=Homo sapiens GN=TARBP1 PE=1 SV=1
Length = 1621
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 25/153 (16%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVNFRHFHSLSDARV 65
VV I K N+G L R+ FG S +++ GS S F+H ++ +
Sbjct: 1466 VVASLIDKPTNLGGLCRTCEVFGASVLVV---------GSLQCISDKQFQHLSVSAEQWL 1516
Query: 66 ------------FLKSKDCD---ICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKE 110
+L+ K + I GVE T ++D+TQ+ F + + LLGNE G+ A
Sbjct: 1517 PLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANL 1576
Query: 111 CEICDFFVYIPQYGGGTASLNVTVAASIVLHHF 143
+ D V IPQ G SLNV V+ ++++ +
Sbjct: 1577 IQQLDVCVEIPQQ-GIIRSLNVHVSGALLIWEY 1608
>sp|Q6FF50|RLMB_ACIAD 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Acinetobacter
sp. (strain ADP1) GN=rlmB PE=3 SV=1
Length = 248
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSH-----GSTSHVNFRHFHSL 60
+ + + HN+G R+A A G++ +I+ R + + G V F +L
Sbjct: 100 LALDQVTDPHNLGACIRTAAAMGIAAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNL 159
Query: 61 SDARVFLKSKD-CDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
+ +K+ + G + + A+ + ++ F + A ++G E GL CD VY
Sbjct: 160 ARTLAHIKAHFFVKVVGTMLDEKALPIQKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVY 219
Query: 120 IPQYGGGTASLNVTVAASIVLHH 142
IP G SLNV+VAA + L+
Sbjct: 220 IP-MSGNLQSLNVSVAAGMALYE 241
>sp|Q9JZR3|RLMB_NEIMB 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rlmB PE=3 SV=1
Length = 250
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD--FNAFGSH---GSTSHVNFRHFHSL 60
+++ I HN+G R+A A GV +I + NA S G+ V + +L
Sbjct: 99 LILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNL 158
Query: 61 SDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYI 120
+ LK I G +++ + D+ S A+++GNEG G+ E CD V I
Sbjct: 159 ARTLRELKEYGIWIIGTDMSGES-DLYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSI 217
Query: 121 PQYGGGTASLNVTVAASIVL 140
P + G S+NV+V+A +VL
Sbjct: 218 PMF-GTVESMNVSVSAGMVL 236
>sp|Q7VQP0|RLMB_BLOFL 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Blochmannia
floridanus GN=rlmB PE=3 SV=1
Length = 254
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 9/146 (6%)
Query: 1 MIESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGR-RDFNAFGS-----HGSTSHVNF 54
+I +V+ I HN+G RSA A GV MI+V R R N + GS+ V F
Sbjct: 95 IIPLLLVLDGITDPHNLGACIRSADAAGV-HMIIVPRDRSANVNATVRKVASGSSDRVPF 153
Query: 55 RHFHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEIC 114
+LS LK + I G + N + A ++G+E G+ E C
Sbjct: 154 VRVTNLSRTLKLLKKYNIYIVGSVLRSNQILFNTR-LIDPIALVMGSESSGIRRLTRENC 212
Query: 115 DFFVYIPQYGGGTASLNVTVAASIVL 140
D V+IP T SLNV+VA I L
Sbjct: 213 DKLVHIPTL-QSTVSLNVSVATGIFL 237
>sp|A1TG08|Y5337_MYCVP Uncharacterized tRNA/rRNA methyltransferase Mvan_5337
OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
GN=Mvan_5337 PE=3 SV=1
Length = 314
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 1 MIESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFG-----SHGSTSHVNFR 55
M V + NI+ N+G + RS AFG +++ RR + S G+ +
Sbjct: 162 MPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTPVA 221
Query: 56 HFHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICD 115
+L+ A + G++ D V Q ++G+EG GLS E CD
Sbjct: 222 RATNLTRALKQWADAGLQVVGLD-ADGDTTVDQIDGAGPIVVVVGSEGKGLSRLVRENCD 280
Query: 116 FFVYIPQYGGGTASLNVTVAASIVLHHF 143
V IP G T SLN +VAA +VL
Sbjct: 281 AVVSIP-MAGPTESLNASVAAGVVLAEI 307
>sp|B2HJ20|Y5079_MYCMM Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=MMAR_5079 PE=3 SV=1
Length = 310
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFG-----SHGSTSHVNFRHFHS 59
V + NI+ N+G + RS AFG +++ RR + S G+ + + +
Sbjct: 163 LVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATN 222
Query: 60 LSDARVFLKSKDCDICGVEI-TDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFV 118
L+ A + + G++ D A+D ++G+EG GLS + CD V
Sbjct: 223 LTRALKDWADRGVRVVGLDAGGDTAIDDLDG--SDPIVVVVGSEGKGLSRLVRQTCDEVV 280
Query: 119 YIPQYGGGTASLNVTVAASIVLHHF 143
+P G T SLN +VAA +VL
Sbjct: 281 SVP-MAGPTESLNASVAAGVVLAEI 304
>sp|A0PV26|Y4155_MYCUA Uncharacterized tRNA/rRNA methyltransferase MUL_4155
OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_4155
PE=3 SV=1
Length = 310
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFG-----SHGSTSHVNFRHFHS 59
V + NI+ N+G + RS AFG +++ RR + S G+ + + +
Sbjct: 163 LVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATN 222
Query: 60 LSDARVFLKSKDCDICGVEI-TDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFV 118
L+ A + + G++ D A+D ++G+EG GLS + CD V
Sbjct: 223 LTRALKDWADRGVRVVGLDAGGDTAIDDLDG--SDPIVVVVGSEGKGLSRLVRQTCDEVV 280
Query: 119 YIPQYGGGTASLNVTVAASIVLHHF 143
+P G T SLN +VAA +VL
Sbjct: 281 SVP-MAGPTESLNASVAAGVVLAEI 304
>sp|A0R557|Y6073_MYCS2 Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073/MSMEI_5913
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=MSMEG_6073 PE=3 SV=1
Length = 314
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTS-----------HVN 53
V + NI+ N+G + RS AF +++ RR + TS N
Sbjct: 167 LVALDNISDPRNLGAIVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATN 226
Query: 54 F-RHFHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECE 112
R S +DA + + D G + T + +D T T ++G+EG GLS E
Sbjct: 227 LNRTLKSFADAGLQIVGLDA---GGDTTLDELDAT-----GPTVVVVGSEGKGLSRLVRE 278
Query: 113 ICDFFVYIPQYGGGTASLNVTVAASIVLHHF 143
CD V IP G T SLN +VAA +VL
Sbjct: 279 HCDAIVSIP-MAGPTESLNASVAAGVVLAEI 308
>sp|A4T5L0|Y1447_MYCGI Uncharacterized tRNA/rRNA methyltransferase Mflv_1447
OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_1447
PE=3 SV=1
Length = 314
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFG-----SHGSTSHVNFRHFHS 59
V + NI+ N+G + RS AFG ++L RR + S G+ + +
Sbjct: 166 LVALDNISDPRNLGAIVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTPVARATN 225
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFK--KSTAFLLGNEGMGLSAKECEICDFF 117
L+ R + D + V + D D T T ++G+EG GLS E CD
Sbjct: 226 LN--RTLKQYADAGLQVVGL-DAGGDTTIDEIDGLTPTIVVVGSEGKGLSRLVRENCDRI 282
Query: 118 VYIPQYGGGTASLNVTVAASIVL 140
V IP G T SLN +VAA +VL
Sbjct: 283 VSIP-MAGPTESLNASVAAGVVL 304
>sp|Q6IN84|MRM1_HUMAN rRNA methyltransferase 1, mitochondrial OS=Homo sapiens GN=MRM1
PE=1 SV=1
Length = 353
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 20/156 (12%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD---FNAFGSHGSTSHVNFRHFHSLS 61
++V+ I N G + RSA GV ++I RR+ S S + S
Sbjct: 147 WLVLDGIQDPRNFGAVLRSAHFLGVDKVI-TSRRNSCPLTPVVSKSSAGAMEVMDVFSTD 205
Query: 62 DARVFLKSKD------CDICGVEITDNA-------VDVTQHPFKKSTAFLLGNEGMGLSA 108
D FL++K G T++ + + +++ T +LGNEG GLS
Sbjct: 206 DLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQ 265
Query: 109 KECEICDFFVYI-P--QYGGGTASLNVTVAASIVLH 141
+ C + I P Q G SLNV+VAA I+LH
Sbjct: 266 EVQASCQLLLTILPRRQLPPGLESLNVSVAAGILLH 301
>sp|B1MGY6|Y572_MYCA9 Uncharacterized tRNA/rRNA methyltransferase MAB_0572
OS=Mycobacterium abscessus (strain ATCC 19977 / DSM
44196) GN=MAB_0572 PE=3 SV=1
Length = 315
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFG-----SHGSTSHVNFRHFHS 59
V + NI+ N+G + RS AFG +++ RR + S G+ + + +
Sbjct: 169 LVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATN 228
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
L+ + K I G++ + ++ A ++G+EG GLS + CD V
Sbjct: 229 LTRTLKDWQDKGITIVGLDAGGD-TELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVS 287
Query: 120 IPQYGGGTASLNVTVAASIVLHHF 143
IP G SLN +VAA +VL
Sbjct: 288 IP-MAGPVESLNASVAAGVVLAEI 310
>sp|Q8EAG8|RLMB_SHEON 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Shewanella
oneidensis (strain MR-1) GN=rlmB PE=3 SV=1
Length = 246
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMIL-----VGRRDFNAFGSHGSTSHVNFRHFHS 59
+++ + HN+G R+A A GV +I+ VG + + G+ V +
Sbjct: 99 LLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTN 158
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
L+ L+ K I G + ++ Q K A +G EG GL E CD V
Sbjct: 159 LARTMRHLQEKGVWIVGTA-GEADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVS 217
Query: 120 IPQYGGGTASLNVTVAASIVL 140
IP G +SLNV+VA I L
Sbjct: 218 IP-MSGSVSSLNVSVATGICL 237
>sp|Q82XD1|RLMB_NITEU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=rlmB PE=3
SV=1
Length = 260
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGS-----HGSTSHVNFRHFHS 59
+V+ + HN+G R A AFGV +++ R + G+ V F F
Sbjct: 98 LLVLDGVKDPHNLGACLRVADAFGVHAVVVPKDRAVGLSATVHKVASGAVDTVPF--FAV 155
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQH-PFKKSTAFLLGNEGMGLSAKECEICDFFV 118
+ AR + K+ + V +A D + A++LG E G+ E CD V
Sbjct: 156 TNLARTLRELKEMGLWIVGTAADAPDTLDSVTLTRPLAWVLGAEDGGMRRLTREACDLLV 215
Query: 119 YIPQYGGGTASLNVTVAASIVLHHFGVWAGFSERTRDG 156
IP G SLNV+V+A I L F + S+RT G
Sbjct: 216 SIP-MSGSIESLNVSVSAGICL--FETFRQHSQRTGSG 250
>sp|Q8ZKA2|RLMB_SALTY 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rlmB PE=3 SV=1
Length = 243
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFGSH---GSTSHVNFRHFHS 59
+++ + HN+G RSA A GV +I+ R NA G+ V +
Sbjct: 97 LLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN 156
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVT--QHPFKKSTAFLLGNEGMGLSAKECEICDFF 117
L+ L+ ++ I G T D T Q A ++G EG G+ E CD
Sbjct: 157 LARTMRMLQEENIWIVG---TAGEADHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDEL 213
Query: 118 VYIPQYGGGTASLNVTVAASIVL 140
+ IP G +SLNV+VA I L
Sbjct: 214 ISIP-MAGSVSSLNVSVATGICL 235
>sp|P63180|RLMB_SHIFL 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Shigella
flexneri GN=rlmB PE=3 SV=1
Length = 243
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFGSH---GSTSHVNFRHFHS 59
+++ + HN+G RSA A GV +I+ R NA G+ V +
Sbjct: 97 LLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN 156
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKS--TAFLLGNEGMGLSAKECEICDFF 117
L+ L+ ++ I G T D T + K + A ++G EG G+ E CD
Sbjct: 157 LARTMRMLQEENIWIVG---TAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDEL 213
Query: 118 VYIPQYGGGTASLNVTVAASIVL 140
+ IP G +SLNV+VA I L
Sbjct: 214 ISIP-MAGSVSSLNVSVATGICL 235
>sp|Q8Z182|RLMB_SALTI 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Salmonella
typhi GN=rlmB PE=3 SV=1
Length = 243
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFGSH---GSTSHVNFRHFHS 59
+++ + HN+G RSA A GV +I+ R NA G+ V +
Sbjct: 97 LLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN 156
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVT--QHPFKKSTAFLLGNEGMGLSAKECEICDFF 117
L+ L+ ++ I G T D T Q A ++G EG G+ E CD
Sbjct: 157 LARTMRMLQEENIWIVG---TAGEADHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDEL 213
Query: 118 VYIPQYGGGTASLNVTVAASIVL 140
+ IP G +SLNV+VA I L
Sbjct: 214 ISIP-MAGSVSSLNVSVATGICL 235
>sp|P63177|RLMB_ECOLI 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Escherichia
coli (strain K12) GN=rlmB PE=1 SV=1
Length = 243
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFGSH---GSTSHVNFRHFHS 59
+++ + HN+G RSA A GV +I+ R NA G+ V +
Sbjct: 97 LLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN 156
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKS--TAFLLGNEGMGLSAKECEICDFF 117
L+ L+ ++ I G T D T + K + A ++G EG G+ E CD
Sbjct: 157 LARTMRMLQEENIWIVG---TAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDEL 213
Query: 118 VYIPQYGGGTASLNVTVAASIVL 140
+ IP G +SLNV+VA I L
Sbjct: 214 ISIP-MAGSVSSLNVSVATGICL 235
>sp|P63178|RLMB_ECOL6 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rlmB
PE=3 SV=1
Length = 243
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFGSH---GSTSHVNFRHFHS 59
+++ + HN+G RSA A GV +I+ R NA G+ V +
Sbjct: 97 LLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN 156
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKS--TAFLLGNEGMGLSAKECEICDFF 117
L+ L+ ++ I G T D T + K + A ++G EG G+ E CD
Sbjct: 157 LARTMRMLQEENIWIVG---TAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDEL 213
Query: 118 VYIPQYGGGTASLNVTVAASIVL 140
+ IP G +SLNV+VA I L
Sbjct: 214 ISIP-MAGSVSSLNVSVATGICL 235
>sp|P63179|RLMB_ECO57 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Escherichia
coli O157:H7 GN=rlmB PE=3 SV=1
Length = 243
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFGSH---GSTSHVNFRHFHS 59
+++ + HN+G RSA A GV +I+ R NA G+ V +
Sbjct: 97 LLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN 156
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKS--TAFLLGNEGMGLSAKECEICDFF 117
L+ L+ ++ I G T D T + K + A ++G EG G+ E CD
Sbjct: 157 LARTMRMLQEENIWIVG---TAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDEL 213
Query: 118 VYIPQYGGGTASLNVTVAASIVL 140
+ IP G +SLNV+VA I L
Sbjct: 214 ISIP-MAGSVSSLNVSVATGICL 235
>sp|Q8ZIV4|RLMB_YERPE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Yersinia
pestis GN=rlmB PE=3 SV=1
Length = 246
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFG---SHGSTSHVNFRHFHS 59
+V+ + HN+G RSA A GV +I+ R NA + G+ +V +
Sbjct: 97 LLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTN 156
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVT--QHPFKKSTAFLLGNEGMGLSAKECEICDFF 117
L+ L+ + I G T D T Q A ++G EG G+ E CD
Sbjct: 157 LARTLRVLQEHNVWIVG---TAGEADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDEL 213
Query: 118 VYIPQYGGGTASLNVTVAASIVL 140
+ IP G +SLNV+VA + L
Sbjct: 214 ISIP-MAGSVSSLNVSVATGVCL 235
>sp|Q76NT0|MRM1_DICDI Mitochondrial rRNA methyltransferase OS=Dictyostelium discoideum
GN=mrm1 PE=3 SV=1
Length = 531
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFGSHGSTSHVNFRHFHSLSD 62
++V+ + NVG + R+ + F + +++ + S S+ +
Sbjct: 375 WLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGACESFVINRTES 434
Query: 63 ARVFLKSKD---CDICGVEITD-----NAVDVTQHPFKKSTAFLLGNEGMGLSAKECEIC 114
FLKS ++ G + D +D+ Q + T +LGNEG GL EIC
Sbjct: 435 IEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTILILGNEGFGLKPSVLEIC 494
Query: 115 DFFVYIPQYGGGTASLNVTVAASIVLH 141
+ + I SLNV+V + I++H
Sbjct: 495 NKTIKIVGGNYKIDSLNVSVTSGILIH 521
>sp|Q87D65|RLMB_XYLFT 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rlmB PE=3
SV=1
Length = 249
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMIL-----VGRRDFNAFGSHGSTSHVNFRHFHS 59
+V+ + HN+G RSA A GV+ +I+ VG S G+ + +
Sbjct: 101 LLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVN 160
Query: 60 LSDARVFLKSKDCDICG----VEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICD 115
L+ + L+ +D I G VE + A+D + + A +LG E GL E CD
Sbjct: 161 LARSLRELQKQDVWIYGLAGEVETSLYALD-----LRGNVALVLGGEADGLRRLTREHCD 215
Query: 116 FFVYIPQYGGGTASLNVTVAASIVL 140
IP G SLNV+VAA + L
Sbjct: 216 VLARIP-MPGEVESLNVSVAAGVTL 239
>sp|Q9PC00|RLMB_XYLFA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Xylella
fastidiosa (strain 9a5c) GN=rlmB PE=3 SV=1
Length = 249
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMIL-----VGRRDFNAFGSHGSTSHVNFRHFHS 59
+V+ + HN+G RSA A GV+ +I+ VG S G+ + +
Sbjct: 101 LLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVN 160
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
L+ + L+ +D I G+E + + + A +LG E GL E CD
Sbjct: 161 LARSLRELQKQDVWIYGLE-GEAETSLYALDLRGKVALVLGGEADGLRRLTREHCDVLAR 219
Query: 120 IPQYGGGTASLNVTVAASIVL 140
IP G SLNV+VAA + L
Sbjct: 220 IP-MPGEVESLNVSVAAGVTL 239
>sp|Q87L11|RLMB_VIBPA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rlmB PE=3 SV=1
Length = 247
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNAFGSH---GSTSHVNFRHFHS 59
+V+ + HN+G R+A A GV+ +I+ R NA S G+ V +
Sbjct: 98 LLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTN 157
Query: 60 LSDARVFLKSKDCDICGVEITDNAV-DVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFV 118
L AR ++ I V A D+ Q A ++G EG G+ E CD +
Sbjct: 158 L--ARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLI 215
Query: 119 YIPQYGGGTASLNVTVAASIVL 140
IP G +SLNV+VA+ I L
Sbjct: 216 KIP-MAGSVSSLNVSVASGICL 236
>sp|Q7MH13|RLMB_VIBVY 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
vulnificus (strain YJ016) GN=rlmB PE=3 SV=1
Length = 247
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSH-----GSTSHVNFRHFHS 59
+++ + HN+G R+A A GV+ +I+ + + G+ V +
Sbjct: 98 LLILDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTN 157
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
L+ L+ + I G + D+ Q S A ++G EG G+ E CD +
Sbjct: 158 LARTMRHLQEQGIWIVGTA-GEATHDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIK 216
Query: 120 IPQYGGGTASLNVTVAASIVL 140
IP G +SLNV+VA+ I L
Sbjct: 217 IP-MAGAVSSLNVSVASGICL 236
>sp|Q8DCT8|RLMB_VIBVU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
vulnificus (strain CMCP6) GN=rlmB PE=3 SV=1
Length = 247
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSH-----GSTSHVNFRHFHS 59
+++ + HN+G R+A A GV+ +I+ + + G+ V +
Sbjct: 98 LLILDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTN 157
Query: 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVY 119
L+ L+ + I G + D+ Q S A ++G EG G+ E CD +
Sbjct: 158 LARTMRHLQEQGIWIVGTA-GEATHDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIK 216
Query: 120 IPQYGGGTASLNVTVAASIVL 140
IP G +SLNV+VA+ I L
Sbjct: 217 IP-MAGAVSSLNVSVASGICL 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,432,339
Number of Sequences: 539616
Number of extensions: 2945410
Number of successful extensions: 8491
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 8401
Number of HSP's gapped (non-prelim): 100
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)