Query 040494
Match_columns 217
No_of_seqs 238 out of 1077
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:23:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e5y_A TRMH family RNA methylt 100.0 5.9E-41 2E-45 271.7 13.4 146 2-150 4-157 (160)
2 1v2x_A TRNA (GM18) methyltrans 100.0 3.3E-40 1.1E-44 274.9 15.7 144 2-146 21-167 (194)
3 3n4j_A RNA methyltransferase; 100.0 4.1E-40 1.4E-44 268.0 15.0 145 2-149 3-158 (165)
4 2ha8_A TAR (HIV-1) RNA loop bi 100.0 3.2E-40 1.1E-44 272.9 12.1 144 2-146 25-174 (184)
5 1zjr_A TRNA (guanosine-2'-O-)- 100.0 2.2E-39 7.5E-44 273.3 15.1 144 2-146 24-171 (211)
6 3l8u_A SMU.1707C, putative rRN 100.0 2.1E-38 7.2E-43 261.9 16.7 144 2-151 16-169 (182)
7 1gz0_A Hypothetical tRNA/RRNA 100.0 1.1E-38 3.6E-43 275.8 15.5 142 3-146 105-251 (253)
8 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 2E-38 6.7E-43 277.1 16.2 142 3-147 116-261 (274)
9 3nk6_A 23S rRNA methyltransfer 100.0 2.6E-38 8.8E-43 276.7 15.0 139 5-146 121-266 (277)
10 2i6d_A RNA methyltransferase, 100.0 4.3E-38 1.5E-42 272.6 15.8 142 3-146 103-256 (257)
11 1x7o_A Avirb, rRNA methyltrans 100.0 4.8E-38 1.6E-42 276.3 15.6 142 3-146 126-277 (287)
12 3kty_A Probable methyltransfer 100.0 1.5E-37 5E-42 254.4 11.6 140 2-146 9-171 (173)
13 3ilk_A Uncharacterized tRNA/RR 100.0 2.9E-34 9.9E-39 247.0 11.4 140 2-146 6-159 (244)
14 3onp_A TRNA/RRNA methyltransfe 100.0 9.2E-34 3.1E-38 244.5 11.6 140 1-147 2-162 (249)
15 3ic6_A Putative methylase fami 100.0 1E-32 3.5E-37 234.2 10.2 141 2-147 16-194 (223)
16 3dcm_X AdoMet, uncharacterized 99.8 4.9E-21 1.7E-25 158.8 10.1 142 1-144 2-184 (192)
17 2o3a_A UPF0106 protein AF_0751 96.5 0.012 4E-07 47.3 8.2 122 20-161 24-158 (178)
18 2yy8_A ATRM56, UPF0106 protein 95.5 0.041 1.4E-06 44.9 7.5 109 20-144 21-146 (201)
19 2qmm_A UPF0217 protein AF_1056 93.9 0.28 9.4E-06 40.3 8.7 77 58-143 112-192 (197)
20 2qwv_A UPF0217 protein VC_A105 92.7 0.65 2.2E-05 38.4 9.1 77 58-143 121-201 (208)
21 3aia_A UPF0217 protein MJ1640; 92.6 1 3.5E-05 37.2 10.2 77 58-143 123-203 (211)
22 3kw2_A Probable R-RNA methyltr 86.2 8.4 0.00029 32.4 11.1 111 4-115 79-212 (257)
23 1ns5_A Hypothetical protein YB 80.1 1.1 3.7E-05 35.3 2.9 68 70-146 66-143 (155)
24 4fak_A Ribosomal RNA large sub 79.8 1.9 6.5E-05 34.2 4.2 68 70-145 73-151 (163)
25 1vhk_A Hypothetical protein YQ 74.5 18 0.00062 30.4 9.2 117 5-122 83-229 (268)
26 1to0_A Hypothetical UPF0247 pr 72.6 3 0.0001 33.2 3.6 68 71-146 70-148 (167)
27 1o6d_A Hypothetical UPF0247 pr 69.4 3.3 0.00011 32.8 3.1 68 71-146 65-142 (163)
28 4e8b_A Ribosomal RNA small sub 57.8 30 0.001 28.7 7.2 135 5-146 80-242 (251)
29 1vhy_A Hypothetical protein HI 49.7 45 0.0015 27.7 7.0 128 7-141 84-236 (257)
30 1k3r_A Conserved protein MT000 35.7 21 0.00072 30.3 2.7 21 16-36 27-47 (268)
31 3j1r_A Archaeal adhesion filam 32.6 33 0.0011 18.7 2.2 12 132-143 13-24 (26)
32 1q9u_A Uncharacterized protein 29.6 59 0.002 23.6 4.1 52 52-103 7-63 (130)
33 3oii_A Essential for mitotic g 26.6 55 0.0019 27.6 3.7 67 69-143 173-246 (253)
34 2i2w_A Phosphoheptose isomeras 23.9 89 0.0031 24.4 4.5 25 94-122 160-184 (212)
35 3ngf_A AP endonuclease, family 23.3 2.1E+02 0.0071 22.7 6.7 61 1-79 9-69 (269)
36 1k3r_A Conserved protein MT000 23.0 2.8E+02 0.0095 23.3 7.5 89 47-146 160-260 (268)
37 4gud_A Imidazole glycerol phos 22.2 86 0.0029 24.3 4.0 32 1-34 1-32 (211)
38 1m3s_A Hypothetical protein YC 21.9 1.5E+02 0.005 22.3 5.2 16 109-124 119-134 (186)
39 2rcn_A Probable GTPase ENGC; Y 21.5 1.6E+02 0.0055 25.6 6.0 99 3-113 132-235 (358)
40 3fxa_A SIS domain protein; str 21.4 2.2E+02 0.0074 21.7 6.3 28 93-124 120-147 (201)
41 1vim_A Hypothetical protein AF 21.2 1.3E+02 0.0043 23.3 4.8 40 60-124 105-144 (200)
42 3o74_A Fructose transport syst 20.3 2.3E+02 0.0078 21.9 6.3 17 62-78 73-89 (272)
No 1
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=100.00 E-value=5.9e-41 Score=271.70 Aligned_cols=146 Identities=17% Similarity=0.175 Sum_probs=131.6
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCc------cccCCCccceeeEEeCCHHHHHHHhhhCCCcEE
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNA------FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDIC 75 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~------~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~ 75 (217)
|.++||||+|+||+|+|+|+|||++||++ .+++.+.++++ ++++|+.+++|+.++.+++++++.++++|++++
T Consensus 4 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~-~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~l~~~g~~i~ 82 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGAR-LHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMF 82 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCE-EEEESSCSSCCCHHHHHHTTCCHHHHHTCEEESSHHHHHHHHCCCGGGEE
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCc-EEEECCCCCCCccHHHHHHcCCchhhcceEEeCCHHHHHHHHHhCCCEEE
Confidence 45899999999999999999999999995 55566555443 578999999999999999999999999999999
Q ss_pred EEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhh--CCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhccCch
Q 040494 76 GVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEI--CDFFVYIPQYGGGTASLNVTVAASIVLHHFGVWAGFS 150 (217)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~--cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~~~~~ 150 (217)
+++. .++++++++++++|++||||||+.|||+++++. ||..|+|||.|. ++|||||+|++|+|||+.++..++
T Consensus 83 ~~~~-~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~-~~SLNvsvAaaI~lye~~rq~~~~ 157 (160)
T 3e5y_A 83 AFTT-RGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPG-NRSLNLSNTVAVVVFEAWRQAGFE 157 (160)
T ss_dssp EECS-TTCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSS-SCCCCHHHHHHHHHHHHHHHTTTT
T ss_pred EEec-CCCccccccCCCCCEEEEECCCcCCCCHHHHhhccCCeEEEEcCCCC-CCeehHHHHHHHHHHHHHHhccCC
Confidence 9996 577899999999999999999999999999999 999999999995 999999999999999997765543
No 2
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=100.00 E-value=3.3e-40 Score=274.91 Aligned_cols=144 Identities=30% Similarity=0.386 Sum_probs=133.5
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCC-C--CccccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEE
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD-F--NAFGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVE 78 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~-~--~~~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~ 78 (217)
++++||||+|+||+|+|+|+|||++||+++|+++++.. + ..++|+|+.+|+|+..+.+++++++.++++|++|++++
T Consensus 21 ~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~~~~~~r~s~Ga~~~l~~~~~~~l~~~l~~l~~~g~~i~~~~ 100 (194)
T 1v2x_A 21 PDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTVYATA 100 (194)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCCSSCSSGGGTSEEEEESSHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCCchhhHHHCCCChheeeeEecCCHHHHHHHHHHCCCEEEEEe
Confidence 46899999999999999999999999999999997642 3 22789999999999999999999999999999999999
Q ss_pred ecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 79 ITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 79 ~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
.++++.++++++++++++||||||+.|||+++++.||.+|+|||.|. ++|||||+|++|+|||+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~d~~v~IPm~g~-~~SLNvs~AaaI~lye~~rq 167 (194)
T 1v2x_A 101 LREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGM-VQSLNVSVAAAVILFEAQRQ 167 (194)
T ss_dssp CCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSS-CSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCccHhHcccCCCeEEEECCCCCCCCHHHHHhCCeEEEECCCCC-CCceeHHHHHHHHHHHHHHH
Confidence 76778899999999999999999999999999999999999999995 99999999999999999654
No 3
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=100.00 E-value=4.1e-40 Score=268.03 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=130.5
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCc------cccCCCccceeeEEeCCHHHHHHHhhh---CCC
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNA------FGSHGSTSHVNFRHFHSLSDARVFLKS---KDC 72 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~------~~s~Ga~~~~~i~~~~s~~~~l~~l~~---~g~ 72 (217)
|.++||||+|+||+|+|+|+|||++||++ .+++.+.++++ ++++|+.+|+|+.++.+++++++.+++ .|+
T Consensus 3 ~~~~vvL~~~~dp~NlGaI~Rta~a~G~~-~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~lk~~~~~g~ 81 (165)
T 3n4j_A 3 AMLNIVLFEPEIPPNTGNIIRLCANTGCQ-LHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPA 81 (165)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHHHHHTCE-EEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCT
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCe-EEEECCCCCCCccHHHHHhccCceeecCeEEeCCHHHHHHHHHhhccCCC
Confidence 34899999999999999999999999995 55565555543 578999999999999999999999998 999
Q ss_pred cEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhh--CCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhccCc
Q 040494 73 DICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEI--CDFFVYIPQYGGGTASLNVTVAASIVLHHFGVWAGF 149 (217)
Q Consensus 73 ~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~--cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~~~~ 149 (217)
++++++. +++.+++++++++|++||||||++|||+++++. ||.+|+|||.|. ++|||||+|++|+|||+.++.++
T Consensus 82 ~i~~~~~-~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~-~~SLNvavAaaI~lye~~rq~~~ 158 (165)
T 3n4j_A 82 RLFALTT-KGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQAD-SRSMNLSNAVSVVVYEAWRQLGY 158 (165)
T ss_dssp TEEEECT-TCSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTT-CCCCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEc-CCCcchhhccCCCCeEEEECCCCCCCCHHHHhhccCCeEEEECCCCC-CceeeHHHHHHHHHHHHHHhccc
Confidence 9999995 677899999999999999999999999999999 899999999995 99999999999999999766443
No 4
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=272.92 Aligned_cols=144 Identities=29% Similarity=0.348 Sum_probs=131.9
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCc----cccCCCccceeeEEe--CCHHHHHHHhhhCCCcEE
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNA----FGSHGSTSHVNFRHF--HSLSDARVFLKSKDCDIC 75 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~----~~s~Ga~~~~~i~~~--~s~~~~l~~l~~~g~~v~ 75 (217)
++++||||+|+||+|+|+|+|||++||++.|++.+...+++ ++++|+.+|+|+..+ .++.++++.++++||+|+
T Consensus 25 ~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~k~~~r~s~ga~~~l~~~~~~~~~~~~~l~~lk~~g~~i~ 104 (184)
T 2ha8_A 25 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTII 104 (184)
T ss_dssp CCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCGGGGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEECCCCCCCcccceeecCCccceEEEEEEcCCCHHHHHHHHHHCCCEEE
Confidence 46799999999999999999999999999998865444555 468999999999876 899999999999999999
Q ss_pred EEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 76 GVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
+++.+.++.++++++++++++||||||+.|||+++++.||.+|+|||.|. ++|||||+|++|+|||+.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~alV~G~E~~Gls~~~l~~~d~~v~IPm~g~-~~SLNvavAaaI~lye~~rq 174 (184)
T 2ha8_A 105 GVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGI-IRSLNVHVSGALLIWEYTRQ 174 (184)
T ss_dssp EECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSS-SSCCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCcchhhccCCCCEEEEECCcccCCCHHHHHhCCcEEEECCCCC-CCcchHHHHHHHHHHHHHHH
Confidence 99976677899999999999999999999999999999999999999995 99999999999999999654
No 5
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00 E-value=2.2e-39 Score=273.30 Aligned_cols=144 Identities=25% Similarity=0.325 Sum_probs=133.3
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCC-CCCc---cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEE
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR-DFNA---FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGV 77 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~-~~~~---~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~ 77 (217)
++++|||++|+||+|+|+|+|||++||+++|+++++. .+.. ++|+|+.+|+|+..+.+++++++.++++|++|+++
T Consensus 24 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~~~~~~r~s~Ga~~~l~~~~~~~l~~~l~~l~~~g~~i~~~ 103 (211)
T 1zjr_A 24 KDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVAT 103 (211)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTCCCCCHHHHTTGGGSSEEEECSCHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCchHHHHHHcCCCcccceeEecCCHHHHHHHHHHCCCEEEEE
Confidence 3579999999999999999999999999999999765 2321 67999999999999999999999999999999999
Q ss_pred EecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 78 EITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
+.++++.++++++++++++||||||+.|||+++++.||.+|+|||.|. ++|||||+|++|+|||+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~d~~v~IPm~g~-~~SLNvsvAaaI~lye~~rq 171 (211)
T 1zjr_A 104 WLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGM-AQSLNVSVATGIILYEAQRQ 171 (211)
T ss_dssp BCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSS-CSSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCcchhhcccCCCEEEEECCcccCCCHHHHHhCCcEEEeCCCCC-CCeEEHHHHHHHHHHHHHHH
Confidence 976778899999999999999999999999999999999999999995 99999999999999999654
No 6
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=100.00 E-value=2.1e-38 Score=261.92 Aligned_cols=144 Identities=17% Similarity=0.166 Sum_probs=123.1
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCC---c---cccCCCccceeeEEeCCHHHHHHHhhhCCCcEE
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN---A---FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDIC 75 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~---~---~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~ 75 (217)
+.++||||+|+||+|+|+|+|||++||++.+ ++.+.+++ + ++++|+.+++|+.++.++.++++.+ |++++
T Consensus 16 ~~l~vvLd~v~dP~NlGaI~Rta~afG~~~v-iv~~~~~~~~~~~~~ras~g~~~~v~i~~~~~l~~~l~~l---g~~i~ 91 (182)
T 3l8u_A 16 GRNHVVLFQPQIPANTGNIARTCAATNTSLH-IIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSLNDFMNIC---SGKLH 91 (182)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHHHHHTCEEE-EESCCSSCCCTTTC------CCC-CCEEEESSHHHHHHHC---CSEEE
T ss_pred CCEEEEEeCCCCcCcHHHHHHHHHHcCCcEE-EECCCCCCCCcHHHHHhCcChhhhCCeEEcCCHHHHHHHC---CCEEE
Confidence 5789999999999999999999999999655 55555433 3 5789999999999999999999988 89999
Q ss_pred EEEecCCcccccccCCCC--CEEEEEcCCCCCCCHHHHh-hCCcEEEEcCCC-CCCCcccHHHHHHHHHHHHHhccCchh
Q 040494 76 GVEITDNAVDVTQHPFKK--STAFLLGNEGMGLSAKECE-ICDFFVYIPQYG-GGTASLNVTVAASIVLHHFGVWAGFSE 151 (217)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~--~~alV~GnE~~GLs~~~l~-~cD~~v~IP~~g-~~~~SLNVsvAaaIvL~e~~~~~~~~~ 151 (217)
+++. .++.++++++|+. +++||||||+.|||+++++ .||.+|+|||.| . ++|||||+|++|+|||+.++..++.
T Consensus 92 ~~~~-~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~~d~~v~IPm~g~~-~~SLNVsvAaaI~lyE~~rq~~~~~ 169 (182)
T 3l8u_A 92 LITK-FANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVNDQH-VRSLNLSNTVCMIVYEALRQQDFIG 169 (182)
T ss_dssp EECS-SCSSBGGGSCCCSSSCEEEEECBTTTBSCHHHHHHTGGGEEBCCCCTTT-CSCCCHHHHHHHHHHHHHHHTTTGG
T ss_pred EEEc-CCCccccccccCCCCCEEEEECCccCCCCHHHHHHhCCeEEEECCCCCC-CCCEeHHHHHHHHHHHHHHhccccC
Confidence 9985 6778999999988 9999999999999999996 999999999999 7 9999999999999999987765543
No 7
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=1.1e-38 Score=275.83 Aligned_cols=142 Identities=27% Similarity=0.384 Sum_probs=132.2
Q ss_pred ceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCC--CCCc---cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEE
Q 040494 3 ESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNA---FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGV 77 (217)
Q Consensus 3 ~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~--~~~~---~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~ 77 (217)
+++||||+|+||+|+|+|+|||++||++.|++..++ .+++ |+|+|+.+|+|+..+.++.++++.+++.|++|+++
T Consensus 105 ~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~l~~~g~~i~~~ 184 (253)
T 1gz0_A 105 PFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGT 184 (253)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCCCCCCCCHHHHhhhcchheEEEEEEeCCHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999999998654 3565 78999999999999999999999999999999999
Q ss_pred EecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 78 EITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
+ .+++.++++++++++++||||||+.|||+++++.||..|+|||.|. ++|||||+|++|+|||+.++
T Consensus 185 ~-~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~-~~SLNvsvAaaI~lye~~rq 251 (253)
T 1gz0_A 185 A-GEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGS-VSSLNVSVATGICLFEAVRQ 251 (253)
T ss_dssp C-TTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSS-SCCCCHHHHHHHHHHHHHHH
T ss_pred E-CCCCcchhhccCCCCEEEEECCCCcCcCHHHHHhCCEEEEECCCCC-CCceeHHHHHHHHHHHHHHh
Confidence 8 4677899999999999999999999999999999999999999995 99999999999999998653
No 8
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=2e-38 Score=277.09 Aligned_cols=142 Identities=23% Similarity=0.238 Sum_probs=130.9
Q ss_pred ceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCC-CCCc---cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEE
Q 040494 3 ESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR-DFNA---FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVE 78 (217)
Q Consensus 3 ~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~-~~~~---~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~ 78 (217)
.++||||+|+||+|+|+|+|||++||++.|+++++. .+++ ++|+|+.+++|+.+ .++.++++.|++.|++|++++
T Consensus 116 ~~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~v~ras~Ga~~~l~~~~-~~l~~~l~~l~~~g~~i~~~~ 194 (274)
T 1ipa_A 116 ALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQVIRNSTGVVFSLRTLA-ASESEVLDWIKQHNLPLVATT 194 (274)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESCCCTTCHHHHHHTTTGGGTSCEEE-ECHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCCcCcCCHHHHHHcCChhhcceeEe-CCHHHHHHHHHHcCCEEEEEe
Confidence 379999999999999999999999999999998762 2555 68999999999988 999999999999999999999
Q ss_pred ecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhcc
Q 040494 79 ITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVWA 147 (217)
Q Consensus 79 ~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~~ 147 (217)
. .+..++++++++++++||||||+.|||+++++.||..|+|||.|. ++|||||+|+||+|||+.++.
T Consensus 195 ~-~~~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~-~~SLNvsvAaaI~lye~~rq~ 261 (274)
T 1ipa_A 195 P-HAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQ-ADSLNVSVSAALLLYEALRQR 261 (274)
T ss_dssp T-TCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSS-CCCCCHHHHHHHHHHHHHHHH
T ss_pred C-CCCcchhhcCCCCCEEEEECCCCcCCCHHHHHhCCeEEEECCCCC-CCceeHHHHHHHHHHHHHHhc
Confidence 6 466789999999999999999999999999999999999999995 999999999999999997643
No 9
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=2.6e-38 Score=276.74 Aligned_cols=139 Identities=25% Similarity=0.297 Sum_probs=130.0
Q ss_pred EEEEeCCCCcccHHHHHHHhHHHCCCcEEEeC-CC--CCCc---cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEE
Q 040494 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVG-RR--DFNA---FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVE 78 (217)
Q Consensus 5 ~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~-~~--~~~~---~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~ 78 (217)
+||||+|+||+|+|+|+|||++||++.|++++ ++ .+++ ++|+|+.+|+|+.++ ++.++++.|++.||+|++++
T Consensus 121 ~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~v~ras~Ga~~~l~i~~~-~l~~~l~~lk~~g~~v~~~~ 199 (277)
T 3nk6_A 121 VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLD 199 (277)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEEEC-CHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCCEEEEcCCCCcCCCCHHHHHHhCChhhcCeEEEE-CHHHHHHHHHhcCCeEEEEe
Confidence 89999999999999999999999999999987 43 2555 689999999999998 99999999999999999999
Q ss_pred ecCCcccccc-cCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 79 ITDNAVDVTQ-HPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 79 ~~~~~~~l~~-~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
. .++.++++ ++++++++||||||+.|||+++++.||..|+|||.|. ++|||||+|++|+|||+.++
T Consensus 200 ~-~~~~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~~d~~v~IPm~g~-~~SLNvsvAaaI~lye~~rq 266 (277)
T 3nk6_A 200 T-DGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSS-TESLNVSVSVGIALHERSAR 266 (277)
T ss_dssp T-TCSEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCSST-TCCCCHHHHHHHHHHHTHHH
T ss_pred c-CCCcchhhhhccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCC-CCCchHHHHHHHHHHHHHHh
Confidence 6 56789999 9999999999999999999999999999999999995 99999999999999999765
No 10
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=100.00 E-value=4.3e-38 Score=272.58 Aligned_cols=142 Identities=23% Similarity=0.330 Sum_probs=127.9
Q ss_pred ceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCC--CCCc---cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEE
Q 040494 3 ESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNA---FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGV 77 (217)
Q Consensus 3 ~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~--~~~~---~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~ 77 (217)
.++||||+|+||+|+|+|+|||++||++.|++++++ .+++ ++|+|+.+++|+..+.++.++++.|++.|++|+++
T Consensus 103 ~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~v~ras~Ga~~~l~~~~~~~l~~~l~~l~~~g~~i~~~ 182 (257)
T 2i6d_A 103 GLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGA 182 (257)
T ss_dssp SEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCcchHHHHHHHHHHhCCCEEEEcCCCCCcCCHHHheecCCcceeeeEEEeCCHHHHHHHHHHCCCEEEEE
Confidence 478999999999999999999999999999998754 3555 68999999999985699999999999999999999
Q ss_pred EecCCccccccc--CCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCC-----CCCCCcccHHHHHHHHHHHHHhc
Q 040494 78 EITDNAVDVTQH--PFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQY-----GGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 78 ~~~~~~~~l~~~--~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~-----g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
+.. +..+++++ +++++++||||||+.|||+++++.||..|+|||. |. ++|||||+|+||+|||+.++
T Consensus 183 ~~~-~~~~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~~d~~v~IPm~~~~~~g~-~~SLNvsvAaaI~lye~~rq 256 (257)
T 2i6d_A 183 FLD-GQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGH-TESLNVAIATAILCSEWRRR 256 (257)
T ss_dssp EEE-EEETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC-----CCCCHHHHHHHHHHHHHHT
T ss_pred ECC-CCccHHHhhhCcCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCcCCCCCC-CCChhHHHHHHHHHHHHHhc
Confidence 974 55788888 8999999999999999999999999999999998 85 99999999999999999653
No 11
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=4.8e-38 Score=276.26 Aligned_cols=142 Identities=27% Similarity=0.368 Sum_probs=132.1
Q ss_pred ceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCC--CCCc---cccCCCccceeeEEeCCHHHHHHHh---hhCCCc-
Q 040494 3 ESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR--DFNA---FGSHGSTSHVNFRHFHSLSDARVFL---KSKDCD- 73 (217)
Q Consensus 3 ~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~--~~~~---~~s~Ga~~~~~i~~~~s~~~~l~~l---~~~g~~- 73 (217)
.++||||+|+||+|+|+|+|||++||++.|++++++ .+++ ++|+|+.+|+|+..+.++.++++.| ++.|++
T Consensus 126 ~l~lvLd~i~dP~NlGaIiRta~a~G~~~vil~~~~~d~~~~kv~ras~Ga~~~l~i~~~~~l~~~l~~l~~~~~~g~~~ 205 (287)
T 1x7o_A 126 FLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAAGTPI 205 (287)
T ss_dssp CEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSCTTSHHHHHHTTTGGGTSCEEEESSHHHHHHHHHHHHHHTCCC
T ss_pred CEEEEEeCCCCcchHHHHHHHhHhcccCEEEEECCCcCccCHHHHhhhcCcceeeeEEEeCCHHHHHHHHHHHHhcCCce
Confidence 479999999999999999999999999999998754 3555 6899999999999999999999999 999999
Q ss_pred -EEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 74 -ICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 74 -v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
|++++. .++.++++++++++++||||||+.|||+++++.||..|+|||.|. ++|||||+|+||+|||+.++
T Consensus 206 ~i~~~~~-~~~~~~~~~~~~~~~alV~GnE~~Gls~~~~~~~d~~v~IPm~g~-~~SLNvavAaaI~lye~~rq 277 (287)
T 1x7o_A 206 VLVGTDE-HGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMAGS-ASSLNAANAATAILYEAVRQ 277 (287)
T ss_dssp EEEEECT-TCSEEGGGSCTTSCEEEEECBTTTBSCHHHHHHCSEEEECCCSSS-SCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEC-CCCccHhhcCCCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCC-CCceEHHHHHHHHHHHHHHh
Confidence 999996 477889999999999999999999999999999999999999995 99999999999999999654
No 12
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=100.00 E-value=1.5e-37 Score=254.37 Aligned_cols=140 Identities=21% Similarity=0.219 Sum_probs=121.9
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCC----Cc---cccCCCccceee-EEeCCHHHHHHHhhhCCCc
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDF----NA---FGSHGSTSHVNF-RHFHSLSDARVFLKSKDCD 73 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~----~~---~~s~Ga~~~~~i-~~~~s~~~~l~~l~~~g~~ 73 (217)
++++||||+|+||+|+|+|+|||++||+++|+++++.++ ++ +.|+|+.+++|+ ..+.+++++++.++ .
T Consensus 9 ~~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~~~d~~~~~~~~r~a~Ga~~~l~~~~~~~~l~~~l~~~~----~ 84 (173)
T 3kty_A 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT----L 84 (173)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCS----E
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCCccccCCCHHHHHHcCCHHHhhchheecCCHHHHHHhCC----e
Confidence 679999999999999999999999999999999987765 44 579999999995 56689999998876 6
Q ss_pred EEEEEecCC------------ccccc---ccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHH
Q 040494 74 ICGVEITDN------------AVDVT---QHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASI 138 (217)
Q Consensus 74 v~~~~~~~~------------~~~l~---~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaI 138 (217)
+++++.... +.++. +.++++|++||||||++|||+++++.||..|+|||.|. ++|||||+|++|
T Consensus 85 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfG~E~~GLs~~~l~~~d~~v~IPm~g~-~~SLNvs~AaaI 163 (173)
T 3kty_A 85 AFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQ-YSSLNVAQALQL 163 (173)
T ss_dssp EEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCCST-TCCCCHHHHHHH
T ss_pred EEEEccccccCCCCccCHHHHHHHHhhhhccccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCC-CCeEeHHHHHHH
Confidence 888875322 24566 77899999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHhc
Q 040494 139 VLHHFGVW 146 (217)
Q Consensus 139 vL~e~~~~ 146 (217)
+|||+.++
T Consensus 164 ~lye~~r~ 171 (173)
T 3kty_A 164 AAWELRYA 171 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999654
No 13
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=100.00 E-value=2.9e-34 Score=246.98 Aligned_cols=140 Identities=22% Similarity=0.320 Sum_probs=118.6
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCc---cccCCCcccee-eEEeCCHHHHHHHhhhCCCcEEEE
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNA---FGSHGSTSHVN-FRHFHSLSDARVFLKSKDCDICGV 77 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~---~~s~Ga~~~~~-i~~~~s~~~~l~~l~~~g~~v~~~ 77 (217)
.++.|||++|+||+|+|+|+|+|++||+++|+++++..+++ +.|+|+.++++ +..+.+++++++.++ .++++
T Consensus 6 ~~l~vVL~~~~dP~NiGai~Rta~a~G~~~l~lv~p~~~~~~a~r~A~GA~~~l~~~~~~~~l~eal~~~~----~vvat 81 (244)
T 3ilk_A 6 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNARVVDSFDEAVDDCS----LVIGT 81 (244)
T ss_dssp TTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCSCCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCS----EEEEE
T ss_pred cCcEEEEECCCCcChHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHcCChhheeceeEEeCCHHHHHHhCC----eEEEE
Confidence 47899999999999999999999999999999998774444 57899998988 455799999987764 68888
Q ss_pred EecCCcccccc----------cCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 78 EITDNAVDVTQ----------HPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 78 ~~~~~~~~l~~----------~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
+.......... .+++++++||||||++|||+++++.||..|+|||.+. ++|||||+|++|+|||+.++
T Consensus 82 t~~~~~~~~~~~~p~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~-~~SLNva~A~aI~lyE~~rq 159 (244)
T 3ilk_A 82 SARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPD-YSSLNLAMAVQLVSYELRMA 159 (244)
T ss_dssp CCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTT-SCCCCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCcccCCHHHHHHHHhhcCCCEEEEECCCCCCCCHHHHHhCCeEEEecCCCC-CCeeeHHHHHHHHHHHHHHH
Confidence 75332221111 2457899999999999999999999999999999995 99999999999999999765
No 14
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=100.00 E-value=9.2e-34 Score=244.51 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=117.4
Q ss_pred CCceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCC-C-Cc---cccCCCccceee-EEeCCHHHHHHHhhhCCCcE
Q 040494 1 MIESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD-F-NA---FGSHGSTSHVNF-RHFHSLSDARVFLKSKDCDI 74 (217)
Q Consensus 1 ~~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~-~-~~---~~s~Ga~~~~~i-~~~~s~~~~l~~l~~~g~~v 74 (217)
|+.+.|||++|+||+|+|+|+|+|++||+++|+++++.+ + ++ +.++|+.++++. ..+.+++++++.+. .+
T Consensus 2 ~~~~~vVL~~~~dP~NiGai~Rta~a~G~~~l~Lv~p~~~~~~~~a~~~a~GA~~~l~~~~~~~~l~eal~~~~----~v 77 (249)
T 3onp_A 2 SIEPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDCD----YV 77 (249)
T ss_dssp -CCCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTCS----EE
T ss_pred CCceEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCcCCCcHHHHHHcCCccccCceEEEeCCHHHHHHhCC----eE
Confidence 478999999999999999999999999999999998863 3 34 468999987764 45799999987662 67
Q ss_pred EEEEecCCcccccccCC---------------CCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHH
Q 040494 75 CGVEITDNAVDVTQHPF---------------KKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIV 139 (217)
Q Consensus 75 ~~~~~~~~~~~l~~~~~---------------~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIv 139 (217)
++++.. ..++....+ ..|++||||||+.|||+++++.||..|+|||.|. ++|||||+|++|+
T Consensus 78 ~att~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~-~~SLNva~A~aI~ 154 (249)
T 3onp_A 78 FATTAR--GRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPE-FFSLNLAQCVLLL 154 (249)
T ss_dssp EEEESS--CCCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCCTT-CCCCCHHHHHHHH
T ss_pred EEEcCC--CCCCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCHHHHHhCCeEEEEcCCCC-CCceeHHHHHHHH
Confidence 888753 344544333 3599999999999999999999999999999995 9999999999999
Q ss_pred HHHHHhcc
Q 040494 140 LHHFGVWA 147 (217)
Q Consensus 140 L~e~~~~~ 147 (217)
|||+.++.
T Consensus 155 lYE~~rq~ 162 (249)
T 3onp_A 155 AYEWRRQH 162 (249)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99997653
No 15
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=99.98 E-value=1e-32 Score=234.18 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=117.1
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCC---------------------c---cccCCCccceee-EE
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFN---------------------A---FGSHGSTSHVNF-RH 56 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~---------------------~---~~s~Ga~~~~~i-~~ 56 (217)
.+++|||++|+||+|+|+|+|+|++||++.|+++++.++. + +.++|+.++++. ..
T Consensus 16 ~~l~vVLd~~~dP~NiGaI~Rta~afG~~~l~Lv~p~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~aaGA~~~l~~~~v 95 (223)
T 3ic6_A 16 GNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEI 95 (223)
T ss_dssp GGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEE
T ss_pred CCEEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCccccccccccccccccccccccCCHHHHHHhCCccccCceEEE
Confidence 3789999999999999999999999999999999876521 2 568999998874 55
Q ss_pred eCCHHHHHHHhhhCCCcEEEEEecCCccc------------cccc-CCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCC
Q 040494 57 FHSLSDARVFLKSKDCDICGVEITDNAVD------------VTQH-PFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQY 123 (217)
Q Consensus 57 ~~s~~~~l~~l~~~g~~v~~~~~~~~~~~------------l~~~-~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~ 123 (217)
+.+++++++.+ ..+++++....... +.++ ++.++++||||+|++||++++++.||..|+|||.
T Consensus 96 ~~~l~eal~~~----~~vvatt~~~~~~~~~~~~p~e~a~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~IPm~ 171 (223)
T 3ic6_A 96 VATLDEALADT----TIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGN 171 (223)
T ss_dssp ESCHHHHHTTE----EEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECCCCC
T ss_pred eCCHHHHHHhC----CeEEEEeccCCcccccccCHHHHHHHHHHhhcccCCEEEEECCCCCCCCHHHHHhCceEEEecCC
Confidence 78999998765 47888885433211 1122 3468999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHhcc
Q 040494 124 GGGTASLNVTVAASIVLHHFGVWA 147 (217)
Q Consensus 124 g~~~~SLNVsvAaaIvL~e~~~~~ 147 (217)
|. ++|||||+|++|+|||+.++.
T Consensus 172 ~~-~~SLNva~A~aI~lye~~rq~ 194 (223)
T 3ic6_A 172 PD-YFSLNLAQAVQVVCYEIFSQT 194 (223)
T ss_dssp TT-CCCCCHHHHHHHHHHHHHHTT
T ss_pred CC-CCeeEHHHHHHHHHHHHHHhh
Confidence 95 999999999999999997653
No 16
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=99.84 E-value=4.9e-21 Score=158.83 Aligned_cols=142 Identities=20% Similarity=0.241 Sum_probs=111.4
Q ss_pred CCceEEEEeC-CCCccc------------HHHHHHHhHHHCCCcEEEeCCCCCCc----c------ccCCC------ccc
Q 040494 1 MIESYVVVHN-IAKRHN------------VGTLARSATAFGVSEMILVGRRDFNA----F------GSHGS------TSH 51 (217)
Q Consensus 1 ~~~~~vvLd~-v~~p~N------------lG~I~Rsa~afGv~~v~lv~~~~~~~----~------~s~Ga------~~~ 51 (217)
|++++|+|.. |-...| ||.|+|+|..||++.++||.|.+... + ...|+ ..-
T Consensus 2 ~~~~~v~LvhyPv~~~~~~~~~t~vtn~dihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~ 81 (192)
T 3dcm_X 2 LEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAES 81 (192)
T ss_dssp TTSEEEEEECSSEECTTCSEECCCCCHHHHHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHH
T ss_pred CCceEEEEecccccCCCCCEeeeecccccHHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHH
Confidence 6789999997 888888 99999999999999999998864211 0 12344 222
Q ss_pred -eeeEEeCCHHHHHHHhh---hCCCcEEEEEecCC--ccccccc-----CCCCCEEEEEcCCCCCCCHHHHhhCCcEE-E
Q 040494 52 -VNFRHFHSLSDARVFLK---SKDCDICGVEITDN--AVDVTQH-----PFKKSTAFLLGNEGMGLSAKECEICDFFV-Y 119 (217)
Q Consensus 52 -~~i~~~~s~~~~l~~l~---~~g~~v~~~~~~~~--~~~l~~~-----~~~~~~alV~GnE~~GLs~~~l~~cD~~v-~ 119 (217)
-.+..++|++++++.+. .++..+++|+.... ..+..++ ...++++||||+ ++||++|+++.||.++ .
T Consensus 82 L~~a~vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~-~~GLtneel~~cd~~l~~ 160 (192)
T 3dcm_X 82 LKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGT-GWGLPDEILEISDYVLEP 160 (192)
T ss_dssp HTTEEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECC-TTCCCHHHHTTCSEEBCC
T ss_pred hccCeEECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECC-CCCCCHHHHHhcCEEEcc
Confidence 24566799999999997 35567888875332 2222222 346899999999 6999999999999999 7
Q ss_pred EcCCCCCCCcccHHHHHHHHHHHHH
Q 040494 120 IPQYGGGTASLNVTVAASIVLHHFG 144 (217)
Q Consensus 120 IP~~g~~~~SLNVsvAaaIvL~e~~ 144 (217)
||..+. +.||||++|++|+||++.
T Consensus 161 Ip~~~e-Y~~Lnl~~AVaIiLdrl~ 184 (192)
T 3dcm_X 161 IRAQSD-FNHLSVRAAAAIIIDRLI 184 (192)
T ss_dssp TTTTSS-CCCCCHHHHHHHHHHHHT
T ss_pred CCCCCC-CCccCHHHHHHHHHHHHc
Confidence 999985 999999999999999983
No 17
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=96.47 E-value=0.012 Score=47.30 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=82.0
Q ss_pred HHHHhHHHCCCcEEEeCCCCCCc---------cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEEecCCccccc---
Q 040494 20 LARSATAFGVSEMILVGRRDFNA---------FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVEITDNAVDVT--- 87 (217)
Q Consensus 20 I~Rsa~afGv~~v~lv~~~~~~~---------~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~~~~~~~~l~--- 87 (217)
+.-||.|||++++++.+. ++ -..-|..|.+. ..+|...++.+ |..|+-++.- ..++.
T Consensus 24 V~LtARAfGA~~iil~~~---D~~v~esv~dV~~rwGG~F~ve---~~~w~~~i~~w---~G~VVHLTMY--G~~i~dvi 92 (178)
T 2o3a_A 24 VALTARAFGAKGIYFDTE---DKSVFESVRDVVERWGGDFFIK---AVSWKKLLREF---DGLKVHLTMY--GIPLPQKL 92 (178)
T ss_dssp HHHHHHHTTCSEEEESSC---CHHHHHHHHHHHHHHCSCCEEE---ECCHHHHHHHC---CSEEEEEEEE--EEEHHHHH
T ss_pred HHHHHHHhCCCeeEEeCC---CHHHHHHHHHHHHhcCCceEEE---ecCHHHHHHHc---CCEEEEEecC--CCchHHHH
Confidence 456888999999999864 33 12456677776 37888888777 6677776642 22222
Q ss_pred -ccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhccCchhhhhcCCccee
Q 040494 88 -QHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVWAGFSERTRDGNKYVV 161 (217)
Q Consensus 88 -~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~~~~~~R~r~g~kf~~ 161 (217)
++.-..+..+|+|.|. ++.++.+.||..|.|-..+- . =..|.||+|..+. ...-.+...+.|+.+
T Consensus 93 ~~Ir~~~~iLvVVGaeK--VP~evYelADyNVaVgnQPH-S----EVAALAvFLDrl~--G~el~~~f~~ak~~V 158 (178)
T 2o3a_A 93 EEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPH-S----EVAALAVFLDRVL--GKVFDISFDDAKIKV 158 (178)
T ss_dssp HHHHTCSEEEEEEC------CTTHHHHSSEEEESSSSCC-C----HHHHHHHHHHHHT--CCTTTCCCTTCSSEE
T ss_pred HHhhcCCCEEEEECCCc--CCHHHHhhcCcceeeCCCCh-H----HHHHHHHHHHHhh--chHHHhccCCCcEEE
Confidence 2333678999999985 89999999999999977663 2 2468899999886 333455555555433
No 18
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=95.55 E-value=0.041 Score=44.94 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=78.2
Q ss_pred HHHHhHHHCCCcEEEeCCCCCCc---------cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEEecCCccccc---
Q 040494 20 LARSATAFGVSEMILVGRRDFNA---------FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVEITDNAVDVT--- 87 (217)
Q Consensus 20 I~Rsa~afGv~~v~lv~~~~~~~---------~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~~~~~~~~l~--- 87 (217)
+.-||-|||++++++.+.. ++ -..-|..|.+.+. .+|...++.+ |..|+-+++- ..++.
T Consensus 21 V~LtARAfGA~~iil~~~~--D~~v~esv~dV~~rWGG~F~ve~~--~~wk~~ik~w---gG~VVHLTMY--G~~i~dvi 91 (201)
T 2yy8_A 21 VALTARAFGADGIIIASEE--DEKVKESVEDVVKRWGGPFFIEFN--RNWRKVMKEF---TGVKVHLTMY--GLHVDDVI 91 (201)
T ss_dssp HHHHHHHTTCSEEEESSSC--CHHHHHHHHHHHHHHCSCCBCCBC--SCHHHHHHHC---CSEEEEEEEE--EEEHHHHH
T ss_pred HHHHHHHhcCCeEEEcCCc--ChhHHHHHHHHHHhcCCceEEEEC--CCHHHHHHhc---CCEEEEEecC--CCchHHHH
Confidence 4568889999999998642 32 1345677777665 7888888776 6677777642 22332
Q ss_pred -ccC----CCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHH
Q 040494 88 -QHP----FKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFG 144 (217)
Q Consensus 88 -~~~----~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~ 144 (217)
++. -..+..+|+|.|. ++.++.+.||.-|.|-..+- . =..|.||+|..+.
T Consensus 92 ~eIr~~~~~~~~iLVVVGaeK--VP~evYelADyNVaVgnQPH-S----EVAALAvFLDrl~ 146 (201)
T 2yy8_A 92 EELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPH-S----EVAALAVLLDRLL 146 (201)
T ss_dssp HHHHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCC-C----HHHHHHHHHHHHT
T ss_pred HHHHhhcccCCCEEEEECCCc--CCHHHHhhcCcceeeCCCCh-H----HHHHHHHHHHHhc
Confidence 222 2578999999985 99999999999999977663 2 2468889998874
No 19
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=93.92 E-value=0.28 Score=40.29 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=62.8
Q ss_pred CCHHHHHHHhhhCCCcEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHH----HHhhCCcEEEEcCCCCCCCcccHH
Q 040494 58 HSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAK----ECEICDFFVYIPQYGGGTASLNVT 133 (217)
Q Consensus 58 ~s~~~~l~~l~~~g~~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~----~l~~cD~~v~IP~~g~~~~SLNVs 133 (217)
.+++++++.+++.+ +++.++- ...++....++.+.+||+|- ..|++++ +...++..++| | -.+|=.+
T Consensus 112 ~sle~ll~e~~~~~-~v~~L~E--~G~~i~~~~~~~~~~fvlGd-H~~f~~e~~~~l~~~~~~~iSi---g--p~~L~A~ 182 (197)
T 2qmm_A 112 KGLEELIEELSEKY-SIIYLKE--DGVDISNAQLPPNPLFVIGD-HEGLTEEQEKVVERYAALKLSL---S--PLSLLAE 182 (197)
T ss_dssp CCHHHHHHHHHHHS-EEEEEEE--EEEEGGGSCCCSSEEEEEEC-TTCCCHHHHHHHHTTCSEEEEC---C--SSCCCHH
T ss_pred CCHHHHHHHhhcCC-cEEEEcC--CCCCCchhhcCCCCEEEEeC-CCCCCHHHHHHHHHhcCeEEEE---C--CchhHHH
Confidence 78999999987544 4776663 45677777777889999999 8999999 77888888888 2 2589999
Q ss_pred HHHHHHHHHH
Q 040494 134 VAASIVLHHF 143 (217)
Q Consensus 134 vAaaIvL~e~ 143 (217)
++++++-+++
T Consensus 183 ~vi~~vh~~l 192 (197)
T 2qmm_A 183 QCVVIAHHHL 192 (197)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
No 20
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=92.73 E-value=0.65 Score=38.37 Aligned_cols=77 Identities=9% Similarity=0.114 Sum_probs=53.5
Q ss_pred CCHHHHHHHhhhCCCcEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhC----CcEEEEcCCCCCCCcccHH
Q 040494 58 HSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEIC----DFFVYIPQYGGGTASLNVT 133 (217)
Q Consensus 58 ~s~~~~l~~l~~~g~~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~c----D~~v~IP~~g~~~~SLNVs 133 (217)
.+++++++.+++.|. +|.+. +...++.++.++.+.+||+|- ..|++++..+.- +..|+| | ..+|=.+
T Consensus 121 ~~fe~ll~e~~~~~~-ly~L~--e~G~di~~~~~~~~~~FvLgD-H~g~~~eee~~L~~~~~~~iSl---G--P~~l~A~ 191 (208)
T 2qwv_A 121 ISFEALLGELAEHHS-LYMMD--KKGDSIRDIKIGPNPCFILTD-HIPMPKKSGNSMKRLGVEKISL---G--PKMLFAS 191 (208)
T ss_dssp CCHHHHHHHHHTTSE-EEEEE--EEEEETTTSCCCSSEEEEECC-----------CTTTTTCEEEEC---C--SSCCCHH
T ss_pred CCHHHHHHHHHhcCc-EEEEe--CCCcCHhhccCCCCCEEEEcC-CCCCCHHHHHHHHhcCCeEEEe---C--chHHHHH
Confidence 689999999987644 77776 456889999998999999995 999999976544 455665 3 3589999
Q ss_pred HHHHHHHHHH
Q 040494 134 VAASIVLHHF 143 (217)
Q Consensus 134 vAaaIvL~e~ 143 (217)
++..|+-+++
T Consensus 192 hcI~~vhn~L 201 (208)
T 2qwv_A 192 QCVTLIHNEI 201 (208)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 21
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=92.57 E-value=1 Score=37.23 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=62.2
Q ss_pred CCHHHHHHHhhhCCCcEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHH---H-HhhCCcEEEEcCCCCCCCcccHH
Q 040494 58 HSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAK---E-CEICDFFVYIPQYGGGTASLNVT 133 (217)
Q Consensus 58 ~s~~~~l~~l~~~g~~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~---~-l~~cD~~v~IP~~g~~~~SLNVs 133 (217)
.+++++++.+.+.+..++.++- ...++....+ .+.+||+|- ..|++++ . ...++..++| | -.+|=.+
T Consensus 123 ~sle~ll~e~~~~~~~v~~L~E--~G~~i~~~~~-~~~~fvlGd-H~~f~~e~~~~L~~~~~~~iSi---g--p~~L~A~ 193 (211)
T 3aia_A 123 LGFRNLVLEKLEEGKNIYYLHM--NGEDVENVDI-ENPVFIIGD-HIGIGEEDERFLDEIKAKRISL---S--PLELHAN 193 (211)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEE--EEEEGGGCCC-CSEEEEEEC-SSCSCHHHHHHHHHTTCEEEEC---C--SSCCCHH
T ss_pred CCHHHHHHHHhhcCCcEEEEcC--CCCCCccccc-CCcEEEEEC-CCCCCHHHHHHHHhhCCeEEEE---C--CcchHHH
Confidence 7899999998877767887774 4567777777 788999999 8899999 5 4667788887 2 2589999
Q ss_pred HHHHHHHHHH
Q 040494 134 VAASIVLHHF 143 (217)
Q Consensus 134 vAaaIvL~e~ 143 (217)
++++++-+++
T Consensus 194 hvi~~vh~~L 203 (211)
T 3aia_A 194 HCITIIHNVL 203 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999988
No 22
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=86.17 E-value=8.4 Score=32.40 Aligned_cols=111 Identities=9% Similarity=0.071 Sum_probs=65.7
Q ss_pred eEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCc------c-------cc-CCCcccee-eEEeCCHHHHHHHhh
Q 040494 4 SYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNA------F-------GS-HGSTSHVN-FRHFHSLSDARVFLK 68 (217)
Q Consensus 4 ~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~------~-------~s-~Ga~~~~~-i~~~~s~~~~l~~l~ 68 (217)
+.|++--+....-+=-|++-|.-+|++.|+.+....... | ++ +....++| +....++.++++.+.
T Consensus 79 i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~~~k~eRw~~I~~eAaeQs~R~~~P~v~~~~~~~~~l~~~~ 158 (257)
T 3kw2_A 79 ITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTP 158 (257)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHSC
T ss_pred eEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhhhhhHHHHHHHHHHHHHHcCCCcCCEecCcCCHHHHHhhcc
Confidence 344433333245577789999999999999874321111 0 11 12244555 445578899888755
Q ss_pred hCCCcEEEEEecC------Cccccccc--CCCCCEEEEEcCCCCCCCHHHHhhCC
Q 040494 69 SKDCDICGVEITD------NAVDVTQH--PFKKSTAFLLGNEGMGLSAKECEICD 115 (217)
Q Consensus 69 ~~g~~v~~~~~~~------~~~~l~~~--~~~~~~alV~GnE~~GLs~~~l~~cD 115 (217)
..+..+++..... ...++.+. +..+++++++|.| -|+|++.++.+-
T Consensus 159 ~~~~~li~~~~e~~~~~~~~~~~l~~~~~~~~~~v~l~IGPE-GGfs~~Ei~~~~ 212 (257)
T 3kw2_A 159 KAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPE-GDFSPSEVESAL 212 (257)
T ss_dssp TTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCT-TCCCHHHHHHHH
T ss_pred ccCCEEEEEcccccccccccccchhHhhccCCCcEEEEECCC-CCCCHHHHHHHH
Confidence 4454555442111 22233322 2257899999999 699999887653
No 23
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=80.10 E-value=1.1 Score=35.28 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=44.1
Q ss_pred CCCcEEEEEecCCcccccccCC----------CCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHH
Q 040494 70 KDCDICGVEITDNAVDVTQHPF----------KKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIV 139 (217)
Q Consensus 70 ~g~~v~~~~~~~~~~~l~~~~~----------~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIv 139 (217)
.+ .+++++.. .+.++...| ..+++||+|. ..|+++++++.||..+++-- + .+.=-.+--|+
T Consensus 66 ~~-~vi~Ld~~--Gk~~sS~~fA~~l~~~~~~g~~i~FvIGG-~~Gl~~~v~~rA~~~lSlS~--m---T~pHql~RliL 136 (155)
T 1ns5_A 66 KN-RIVTLDIP--GKPWDTPQLAAELERWKLDGRDVSLLIGG-PEGLSPACKAAAEQSWSLSA--L---TLPHPLVRVLV 136 (155)
T ss_dssp TS-EEEEEEEE--EECCCHHHHHHHHHHHHHHCSCEEEEECB-TTBCCHHHHHHCSEEECCCS--S---CCCHHHHHHHH
T ss_pred CC-cEEEEcCC--CCcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCceEEccC--C---CCcHHHHHHHH
Confidence 35 47777752 344443322 1579999999 89999999999998877522 1 23444555666
Q ss_pred HHHHHhc
Q 040494 140 LHHFGVW 146 (217)
Q Consensus 140 L~e~~~~ 146 (217)
+-+++|.
T Consensus 137 ~EQiYRA 143 (155)
T 1ns5_A 137 AESLYRA 143 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666443
No 24
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=79.83 E-value=1.9 Score=34.19 Aligned_cols=68 Identities=9% Similarity=0.222 Sum_probs=43.9
Q ss_pred CCCcEEEEEecCCcccccccCC-----------CCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHH
Q 040494 70 KDCDICGVEITDNAVDVTQHPF-----------KKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASI 138 (217)
Q Consensus 70 ~g~~v~~~~~~~~~~~l~~~~~-----------~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaI 138 (217)
.+-.+|+++.. .+.++...| ..+++||+|. ..|+++++++.||..+++--- .+.=-.+--|
T Consensus 73 ~~~~vI~LD~~--Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG-~~Gl~~~v~~rA~~~lSlS~m-----TfpHqL~Rli 144 (163)
T 4fak_A 73 PQSTVITLEIQ--GKMLSSEGLAQELNQRMTQGQSDFVFVIGG-SNGLHKDVLQRSNYALSFSKM-----TFPHQMMRVV 144 (163)
T ss_dssp TTSEEEEEEEE--EEECCHHHHHHHHHHHHHTTCCEEEEEECB-TTBCCHHHHHHCSEEEESCSS-----CCCHHHHHHH
T ss_pred CCCEEEEEcCC--CCcCCHHHHHHHHHHHHhcCCcceEEEEEC-CCccCHHHHHhcCceEEEecC-----CCCHHHHHHH
Confidence 35567777752 334433222 2579999999 899999999999988876321 2333445555
Q ss_pred HHHHHHh
Q 040494 139 VLHHFGV 145 (217)
Q Consensus 139 vL~e~~~ 145 (217)
++-+++|
T Consensus 145 L~EQlYR 151 (163)
T 4fak_A 145 LIEQVYR 151 (163)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 25
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=74.48 E-value=18 Score=30.43 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=68.3
Q ss_pred EEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCC-C---CCc-cc---------------cCCCccceeeE-EeCCHHHH
Q 040494 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR-D---FNA-FG---------------SHGSTSHVNFR-HFHSLSDA 63 (217)
Q Consensus 5 ~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~-~---~~~-~~---------------s~Ga~~~~~i~-~~~s~~~~ 63 (217)
+.++-.+-++..+=-|++-|.-+|++.|+.+... + ++. +. -.....++|-. ...++.++
T Consensus 83 v~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~~~ 162 (268)
T 1vhk_A 83 VYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQL 162 (268)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHHH
T ss_pred EEEEEeeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCCCCcEEecCCCHHHH
Confidence 3445566777889999999999999999988542 2 221 10 11224455543 45789998
Q ss_pred HHHhhhCCCcEEEEEecCC-cccc------cccCCCCCEEEEEcCCCCCCCHHHHhhCC--cEEEEcC
Q 040494 64 RVFLKSKDCDICGVEITDN-AVDV------TQHPFKKSTAFLLGNEGMGLSAKECEICD--FFVYIPQ 122 (217)
Q Consensus 64 l~~l~~~g~~v~~~~~~~~-~~~l------~~~~~~~~~alV~GnE~~GLs~~~l~~cD--~~v~IP~ 122 (217)
++.....+..++.-+.... ..++ ..++...++++++|.| -|+|++.++... .+..|-.
T Consensus 163 l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPE-GGfs~~Ei~~~~~~G~~~vsL 229 (268)
T 1vhk_A 163 LQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPE-GGLTEAEVERLTEQDGVTCGL 229 (268)
T ss_dssp HHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCT-TCCCHHHHHHHHHTTCEEECC
T ss_pred HhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCC-CCCCHHHHHHHHHCCCEEecC
Confidence 8866443444444331111 1123 2332224799999999 699999876542 3444444
No 26
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=72.59 E-value=3 Score=33.16 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=45.0
Q ss_pred CCcEEEEEecCCcccccccCC---------C--CCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHH
Q 040494 71 DCDICGVEITDNAVDVTQHPF---------K--KSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIV 139 (217)
Q Consensus 71 g~~v~~~~~~~~~~~l~~~~~---------~--~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIv 139 (217)
+..+++++.. .+.++...| . .+++||+|. ..|+++++++.||..+++--- .+.=-.+--|+
T Consensus 70 ~~~vI~LD~~--Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGG-a~Gl~~~v~~rA~~~lSlS~m-----TfpHqL~RliL 141 (167)
T 1to0_A 70 DAHVIALAIE--GKMKTSEELADTIDKLATYGKSKVTFVIGG-SLGLSDTVMKRADEKLSFSKM-----TFPHQLMRLIL 141 (167)
T ss_dssp TSEEEEEEEE--EEECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCCCHHHHHHCSEEEESCSS-----CCCHHHHHHHH
T ss_pred CCEEEEEcCC--CCcCCHHHHHHHHHHHHhcCCceEEEEEEC-CCCCCHHHHHhhCcEEEccCC-----CCcHHHHHHHH
Confidence 4457777752 333433222 2 479999999 899999999999988886321 24445566666
Q ss_pred HHHHHhc
Q 040494 140 LHHFGVW 146 (217)
Q Consensus 140 L~e~~~~ 146 (217)
+-+++|.
T Consensus 142 ~EQiYRA 148 (167)
T 1to0_A 142 VEQIYRA 148 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 27
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=69.39 E-value=3.3 Score=32.81 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=45.4
Q ss_pred CCcEEEEEecCCcccccccCC----------CCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHH
Q 040494 71 DCDICGVEITDNAVDVTQHPF----------KKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVL 140 (217)
Q Consensus 71 g~~v~~~~~~~~~~~l~~~~~----------~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL 140 (217)
+..+++++. ..+.++...| ..+++||+|. ..|+++++++.||..+++--- .+.=-.+--|++
T Consensus 65 ~~~vI~LD~--~Gk~~sS~~fA~~l~~~~~~G~~i~FvIGG-a~Gl~~~v~~rAd~~lSlS~m-----TfpHqL~RliL~ 136 (163)
T 1o6d_A 65 GSFVMVMDK--RGEEVSSEEFADFLKDLEMKGKDITILIGG-PYGLNEEIFAKAHRVFSLSKM-----TFTHGMTVLIVL 136 (163)
T ss_dssp TCEEEEEEE--EEEECCHHHHHHHHHHHHHHTCCEEEEECC-TTCCCGGGGGGCSEEEECCSS-----CCCHHHHHHHHH
T ss_pred CCEEEEEcC--CCCcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCceEEccCC-----CCcHHHHHHHHH
Confidence 444777775 2344443322 1579999999 899999999999988886321 244455666676
Q ss_pred HHHHhc
Q 040494 141 HHFGVW 146 (217)
Q Consensus 141 ~e~~~~ 146 (217)
-+++|.
T Consensus 137 EQiYRA 142 (163)
T 1o6d_A 137 EQIFRA 142 (163)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 28
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=57.80 E-value=30 Score=28.71 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=78.7
Q ss_pred EEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCC-C---CCc-c--------------cc-CCCcccee-eEEeCCHHHH
Q 040494 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRR-D---FNA-F--------------GS-HGSTSHVN-FRHFHSLSDA 63 (217)
Q Consensus 5 ~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~-~---~~~-~--------------~s-~Ga~~~~~-i~~~~s~~~~ 63 (217)
+.++-.+-++..+=-|++-|.-+|++.|+.+... + ++. + ++ +....++| +....++.++
T Consensus 80 v~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~~iP~v~~~~~~~~~ 159 (251)
T 4e8b_A 80 IHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAW 159 (251)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCBCCCEEHHHH
T ss_pred EEEEEEeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCCcCcEECCcCCHHHH
Confidence 3445567778889999999999999999987432 2 221 0 11 11234444 3334567766
Q ss_pred HHHhhhCCCcEEEEEecCCcccccccCC-CCCEEEEEcCCCCCCCHHHHhhCC--cEEEEcCCCCCCCcccHHH----HH
Q 040494 64 RVFLKSKDCDICGVEITDNAVDVTQHPF-KKSTAFLLGNEGMGLSAKECEICD--FFVYIPQYGGGTASLNVTV----AA 136 (217)
Q Consensus 64 l~~l~~~g~~v~~~~~~~~~~~l~~~~~-~~~~alV~GnE~~GLs~~~l~~cD--~~v~IP~~g~~~~SLNVsv----Aa 136 (217)
++... .+..++ .. .....++...+. .+++++++|.| -|.|++.++.+. .+..|-.-+ .=|=.-+ |.
T Consensus 160 l~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~i~l~IGPE-GGfs~~Ei~~~~~~Gf~~vsLG~---rILRtETA~i~al 232 (251)
T 4e8b_A 160 CAEQD-EGLKLN-LH-PRASNSINTLPLPVERVRLLIGPE-GGLSADEIAMTARYQFTDILLGP---RVLRTETTALTAI 232 (251)
T ss_dssp HHCCC-SSEEEE-EC-TTCSCBGGGSCSCCCEEEEEECCT-TCCCHHHHHHHHHTTCEEEBCCS---SCCCHHHHHHHHH
T ss_pred HhhcC-cCceEe-ec-hhhhCchhhccccCCcEEEEECCC-CCCCHHHHHHHHHCCCEEecCCC---CceeHHHHHHHHH
Confidence 65432 233332 22 234455555554 46789999999 699999887653 244454433 2344443 44
Q ss_pred HHHHHHHHhc
Q 040494 137 SIVLHHFGVW 146 (217)
Q Consensus 137 aIvL~e~~~~ 146 (217)
++++|++-.|
T Consensus 233 s~l~~~~Gdl 242 (251)
T 4e8b_A 233 TALQVRFGDL 242 (251)
T ss_dssp HHHHHHTSST
T ss_pred HHHHHHHccC
Confidence 5666655444
No 29
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=49.72 E-value=45 Score=27.74 Aligned_cols=128 Identities=15% Similarity=0.063 Sum_probs=69.2
Q ss_pred EEeCCCCcccHHHHHHHhHHHCCCcEEEeCCC-C---CCc-c--------------c-cCCCccceeeE-EeCCHHHHHH
Q 040494 7 VVHNIAKRHNVGTLARSATAFGVSEMILVGRR-D---FNA-F--------------G-SHGSTSHVNFR-HFHSLSDARV 65 (217)
Q Consensus 7 vLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~-~---~~~-~--------------~-s~Ga~~~~~i~-~~~s~~~~l~ 65 (217)
++-.+-++..+=-|++-|.-+|++.|+.+... + ++. + + -.....++|-. ...++.++++
T Consensus 84 L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~~~l~ 163 (257)
T 1vhy_A 84 LGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCA 163 (257)
T ss_dssp EEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHHHT
T ss_pred EEEecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEeccCCHHHHHh
Confidence 34456677888899999999999999987532 2 221 0 0 01123445543 3457777765
Q ss_pred HhhhCCCcEEEEEecCCccccccc--CCCCCEEEEEcCCCCCCCHHHHhhCC--cEEEEcCCCCCCCcccHHHHHHHHHH
Q 040494 66 FLKSKDCDICGVEITDNAVDVTQH--PFKKSTAFLLGNEGMGLSAKECEICD--FFVYIPQYGGGTASLNVTVAASIVLH 141 (217)
Q Consensus 66 ~l~~~g~~v~~~~~~~~~~~l~~~--~~~~~~alV~GnE~~GLs~~~l~~cD--~~v~IP~~g~~~~SLNVsvAaaIvL~ 141 (217)
... .+..++.-+ ....++.++ +..+++++++|.| -|+|++.++.+. .+..|-.-+ .=|=.-+|+-.+|.
T Consensus 164 ~~~-~~~~l~~~~--~~~~~l~~~~~~~~~~i~l~IGPE-GGfs~~Ei~~~~~~G~~~vsLG~---rILRtETA~i~als 236 (257)
T 1vhy_A 164 END-GALKLNLHP--RAHYSIKTLPTIPAGGVRLLIGSE-GGLSAQEIAQTEQQGFTEILLGK---RVLRTETASLAAIS 236 (257)
T ss_dssp CCS-SCEEEEECT--TCCCBGGGCCCCCTTCEEEEECCT-TCCCHHHHHHHHHTTCEEEBCCS---SCCCHHHHHHHHHH
T ss_pred cCC-CCcEEEEcC--CCccchhhhhccCCCeEEEEEcCC-CCCCHHHHHHHHHCCCEEecCCC---CeeehHHHHHHHHH
Confidence 322 233333322 222333333 2235899999999 699999876542 344444422 33555555444443
No 30
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=35.68 E-value=21 Score=30.34 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.8
Q ss_pred cHHHHHHHhHHHCCCcEEEeC
Q 040494 16 NVGTLARSATAFGVSEMILVG 36 (217)
Q Consensus 16 NlG~I~Rsa~afGv~~v~lv~ 36 (217)
=+|-|+|+|.-|+|+.|++-.
T Consensus 27 ~~gqIARAaaIF~VdEIvVy~ 47 (268)
T 1k3r_A 27 KVVLIARAASIFGVKRIVIYH 47 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHhccccEEEEEe
Confidence 479999999999999999974
No 31
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=32.64 E-value=33 Score=18.69 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH
Q 040494 132 VTVAASIVLHHF 143 (217)
Q Consensus 132 VsvAaaIvL~e~ 143 (217)
+++|+++++|-|
T Consensus 13 iav~aaVllylW 24 (26)
T 3j1r_A 13 IAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 688999999876
No 32
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=29.65 E-value=59 Score=23.62 Aligned_cols=52 Identities=8% Similarity=-0.024 Sum_probs=30.9
Q ss_pred eeeEEeCCHHHHHHHh----hhCCCcEEEEEecCCcccccccCC-CCCEEEEEcCCC
Q 040494 52 VNFRHFHSLSDARVFL----KSKDCDICGVEITDNAVDVTQHPF-KKSTAFLLGNEG 103 (217)
Q Consensus 52 ~~i~~~~s~~~~l~~l----~~~g~~v~~~~~~~~~~~l~~~~~-~~~~alV~GnE~ 103 (217)
+.+..-.+++++++.+ +++|+.|++.--......-...++ +.-.+|+|||-.
T Consensus 7 ~~~~s~~s~~e~~~~l~~al~~~Gf~v~~~~d~~~~~~~~G~~~~~~~~il~~cnp~ 63 (130)
T 1q9u_A 7 YTVDVSTGMNETIERLEESLKQEGFGVLWQFSVTEKLQEKGLDFSTPMVILEVCNPQ 63 (130)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHTTCCCCSCEEEEEEECHH
T ss_pred EEEEcCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHhcCCCCCCCCEEEEEeCHH
Confidence 3344345677776665 479999987652111111114566 666889999954
No 33
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=26.59 E-value=55 Score=27.59 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=44.3
Q ss_pred hCCCcEEEEEecCCcccccc----cCCCCCEEEEEcCCCCC---CCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHH
Q 040494 69 SKDCDICGVEITDNAVDVTQ----HPFKKSTAFLLGNEGMG---LSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLH 141 (217)
Q Consensus 69 ~~g~~v~~~~~~~~~~~l~~----~~~~~~~alV~GnE~~G---Ls~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~ 141 (217)
..|..+++++.......+.+ +.-..++++++|.=.+| .+.+ ..|..++|-.+ +|-.+++++.+++
T Consensus 173 p~~~~kI~ls~~g~~v~~~~~~~~l~~~~~i~vvVGafahG~~~f~~~---~~~e~iSIs~y-----pLsa~~~c~kic~ 244 (253)
T 3oii_A 173 PTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADE---YVDEKVGLSNY-----PLSASVACSKFCH 244 (253)
T ss_dssp CSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSCCSCTTTT---TCSEEEBSCSS-----CCCHHHHHHHHHH
T ss_pred CCCCeEEEEccCCCccCHHHHHHhcccCCCeEEEEeeeCCCCCcccch---hcceeEEEeCC-----ChhHHHHHHHHHH
Confidence 34566777764322222222 22236789999999999 4443 57778888533 5788999999998
Q ss_pred HH
Q 040494 142 HF 143 (217)
Q Consensus 142 e~ 143 (217)
++
T Consensus 245 a~ 246 (253)
T 3oii_A 245 GA 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 34
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=23.92 E-value=89 Score=24.40 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=15.6
Q ss_pred CEEEEEcCCCCCCCHHHHhhCCcEEEEcC
Q 040494 94 STAFLLGNEGMGLSAKECEICDFFVYIPQ 122 (217)
Q Consensus 94 ~~alV~GnE~~GLs~~~l~~cD~~v~IP~ 122 (217)
+++.|-++.. ..+.+.||.++.+|.
T Consensus 160 ~vIaIT~~~~----s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 160 KVITLTGKDG----GKMAGTADIEIRVPH 184 (212)
T ss_dssp EEEEEEETTC----GGGTTCSSEEEEECC
T ss_pred eEEEEECCCC----CchHHhCCEEEEcCC
Confidence 4444544432 234567999999987
No 35
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=23.25 E-value=2.1e+02 Score=22.69 Aligned_cols=61 Identities=10% Similarity=-0.059 Sum_probs=47.7
Q ss_pred CCceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCccccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEEe
Q 040494 1 MIESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVEI 79 (217)
Q Consensus 1 ~~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~~ 79 (217)
||.+..+..-.-....+-..++.+...|++.|=+..+. + .+..++.+.+++.|..+.++..
T Consensus 9 ~~~~~~~~~~~f~~~~~~~~l~~~~~~G~~~vEl~~~~--~----------------~~~~~~~~~l~~~gl~~~~~~~ 69 (269)
T 3ngf_A 9 MPRFAANLSTMFNEVPFLERFRLAAEAGFGGVEFLFPY--D----------------FDADVIARELKQHNLTQVLFNM 69 (269)
T ss_dssp CCEEEEETTTSCTTSCHHHHHHHHHHTTCSEEECSCCT--T----------------SCHHHHHHHHHHTTCEEEEEEC
T ss_pred CcceeeechhhhccCCHHHHHHHHHHcCCCEEEecCCc--c----------------CCHHHHHHHHHHcCCcEEEEec
Confidence 56666666666677889999999999999998876421 0 2578888899999999988763
No 36
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=22.98 E-value=2.8e+02 Score=23.32 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCccceeeEEe--CCHHHHHHHhhhCCCc-EEEEEecCCccccc-ccC-------CCCCEEEEEcCCCCCCCHHHHhhCC
Q 040494 47 GSTSHVNFRHF--HSLSDARVFLKSKDCD-ICGVEITDNAVDVT-QHP-------FKKSTAFLLGNEGMGLSAKECEICD 115 (217)
Q Consensus 47 Ga~~~~~i~~~--~s~~~~l~~l~~~g~~-v~~~~~~~~~~~l~-~~~-------~~~~~alV~GnE~~GLs~~~l~~cD 115 (217)
|..+--.++.. . +.++++.+ ||. +++++. .+ .++. .++ -.+++.+|||+=..||.+- .-|
T Consensus 160 ~~YwGY~Vr~~~~~-l~~v~~~~---gyd~~I~TS~-~G-~~~~~~l~~~~~~~~~~~~~liVFG~~~~Gl~~~---~fd 230 (268)
T 1k3r_A 160 DRYWGYEVLDTRRN-LAESLKTV---GADVVVATSR-NA-SPITSILDEVKTRMRGAREAAILFGGPYKGLPEI---DAD 230 (268)
T ss_dssp SSCCCCEEEEEEEE-HHHHHHHH---CCSEEEEECT-TS-CBTTTSHHHHHHHHTTCSEEEEECCCSSSCCCSC---CCS
T ss_pred CCccCeEEEEehhh-HHHHHhhc---CCCeEEEECC-CC-CCchhccchhhhcccCCCeEEEEECCccccchhh---hcC
Confidence 54333344444 4 88888665 663 567763 33 2222 222 2356999999988999865 456
Q ss_pred cEE-EEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 116 FFV-YIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 116 ~~v-~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
..+ .||..| ++..=.==|+-|.|.-+..+
T Consensus 231 ~~~Nt~P~QG--srtIRtEEAv~itLa~L~~~ 260 (268)
T 1k3r_A 231 IWVNTLPGQC--TETVRTEEAVLATLSVFNML 260 (268)
T ss_dssp EEEBSSTTCS--SSCCCHHHHHHHHHHHHHHH
T ss_pred eeEeccCCCC--CccccHHHHHHHHHHHhhhh
Confidence 545 357655 45555556677777666444
No 37
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=22.20 E-value=86 Score=24.34 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCceEEEEeCCCCcccHHHHHHHhHHHCCCcEEE
Q 040494 1 MIESYVVVHNIAKRHNVGTLARSATAFGVSEMIL 34 (217)
Q Consensus 1 ~~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~l 34 (217)
|.+.++|+|- ..+|+.+|.|.-..+|++-.++
T Consensus 1 M~~~I~iiD~--g~~n~~si~~al~~~G~~~~v~ 32 (211)
T 4gud_A 1 MTQNVVIIDT--GCANISSVKFAIERLGYAVTIS 32 (211)
T ss_dssp --CCEEEECC--CCTTHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEEC--CCChHHHHHHHHHHCCCEEEEE
Confidence 6677788774 4579999999999999975543
No 38
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.87 E-value=1.5e+02 Score=22.30 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=11.4
Q ss_pred HHHhhCCcEEEEcCCC
Q 040494 109 KECEICDFFVYIPQYG 124 (217)
Q Consensus 109 ~~l~~cD~~v~IP~~g 124 (217)
.+.+.||.++.+|...
T Consensus 119 ~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 119 SIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHCSEEEECSCCS
T ss_pred chHHhCCEEEEeCCcc
Confidence 4567788888887654
No 39
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=21.51 E-value=1.6e+02 Score=25.62 Aligned_cols=99 Identities=12% Similarity=0.191 Sum_probs=57.0
Q ss_pred ceEEEEeCCCCcccHHHHHH---HhHHHCCCcEEEeCCCCCCccccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEEe
Q 040494 3 ESYVVVHNIAKRHNVGTLAR---SATAFGVSEMILVGRRDFNAFGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVEI 79 (217)
Q Consensus 3 ~~~vvLd~v~~p~NlG~I~R---sa~afGv~~v~lv~~~~~~~~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~~ 79 (217)
+.+++++...-..|..-|-| .|...|..-|+++...+..+.. ....+.++++.+++.||.++.++.
T Consensus 132 D~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~-----------~~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 132 DQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE-----------GMDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp CEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH-----------HHHHHHHHHHHHHTTTCCEEECBT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch-----------hHHHHHHHHHHHHhCCCcEEEEec
Confidence 45566666655556665544 4567898877777543221100 001134566667788999888774
Q ss_pred cCCccccccc--CCCCCEEEEEcCCCCCCCHHHHhh
Q 040494 80 TDNAVDVTQH--PFKKSTAFLLGNEGMGLSAKECEI 113 (217)
Q Consensus 80 ~~~~~~l~~~--~~~~~~alV~GnE~~GLs~~~l~~ 113 (217)
.. ...+.++ ...+.++.++|.=+.|=|.-+-.+
T Consensus 201 ~~-~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L 235 (358)
T 2rcn_A 201 HT-QDGLKPLEEALTGRISIFAGQSGVGKSSLLNAL 235 (358)
T ss_dssp TT-TBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHH
T ss_pred CC-CcCHHHHHHhcCCCEEEEECCCCccHHHHHHHH
Confidence 32 2223322 235778889999877766544333
No 40
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=21.43 E-value=2.2e+02 Score=21.67 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCC
Q 040494 93 KSTAFLLGNEGMGLSAKECEICDFFVYIPQYG 124 (217)
Q Consensus 93 ~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g 124 (217)
-+++.|-++.. ..+.+.||..+.+|...
T Consensus 120 ~~vi~IT~~~~----s~l~~~ad~~l~~~~~~ 147 (201)
T 3fxa_A 120 STLIGVTENPD----SVIAKEADIFFPVSVSK 147 (201)
T ss_dssp CEEEEEESCTT----SHHHHHCSEEEECCCSC
T ss_pred CeEEEEECCCC----ChhHHhCCEEEEcCCCc
Confidence 34444444432 24667899999999754
No 41
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=21.18 E-value=1.3e+02 Score=23.31 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=26.7
Q ss_pred HHHHHHHhhhCCCcEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCC
Q 040494 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYG 124 (217)
Q Consensus 60 ~~~~l~~l~~~g~~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g 124 (217)
+.++++.++++|.++++++....+ .+.+.||.++.+|...
T Consensus 105 ~i~~~~~ak~~g~~vI~IT~~~~s-------------------------~La~~ad~~l~~~~~~ 144 (200)
T 1vim_A 105 VVNISKKAKDIGSKLVAVTGKRDS-------------------------SLAKMADVVMVVKGKM 144 (200)
T ss_dssp HHHHHHHHHHHTCEEEEEESCTTS-------------------------HHHHHCSEEEECCSSC
T ss_pred HHHHHHHHHHCCCeEEEEECCCCC-------------------------hHHHhCCEEEEECCcc
Confidence 455566666777777776642221 5667899999998765
No 42
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=20.27 E-value=2.3e+02 Score=21.89 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=10.1
Q ss_pred HHHHHhhhCCCcEEEEE
Q 040494 62 DARVFLKSKDCDICGVE 78 (217)
Q Consensus 62 ~~l~~l~~~g~~v~~~~ 78 (217)
+.++.+++.|++++.+.
T Consensus 73 ~~~~~~~~~~iPvV~~~ 89 (272)
T 3o74_A 73 DSYRELQDKGLPVIAID 89 (272)
T ss_dssp CHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 34555666666666655
Done!