Query 040494
Match_columns 217
No_of_seqs 238 out of 1077
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 14:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040494.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040494hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gz0a1 c.116.1.1 (A:78-243) R 100.0 1.2E-39 8.5E-44 262.7 15.9 143 2-146 17-164 (166)
2 d1v2xa_ c.116.1.1 (A:) tRNA (G 100.0 1.3E-38 9.6E-43 262.5 16.3 144 2-146 21-167 (191)
3 d1ipaa1 c.116.1.1 (A:106-263) 100.0 5.1E-38 3.7E-42 250.9 16.4 141 3-146 11-155 (158)
4 d1mxia_ c.116.1.1 (A:) Hypothe 100.0 1.6E-33 1.2E-37 223.4 15.7 141 4-149 2-150 (156)
5 d2o3aa1 c.116.1.8 (A:1-167) Un 95.4 0.03 2.2E-06 42.7 7.9 122 20-161 22-156 (167)
6 d2qwva1 c.116.1.7 (A:5-205) Un 94.6 0.12 8.8E-06 40.6 9.8 78 57-143 113-194 (201)
7 d2qmma1 c.116.1.7 (A:95-288) U 89.1 1.3 9.8E-05 34.1 9.6 78 57-143 108-189 (194)
8 d1vhka2 c.116.1.5 (A:74-253) H 87.4 3.5 0.00025 30.7 10.9 138 4-143 8-176 (180)
9 d1k3ra2 c.116.1.2 (A:1-92,A:16 84.1 2.2 0.00016 32.7 8.2 117 16-143 27-186 (191)
10 d1to0a_ c.116.1.3 (A:) Hypothe 65.6 2.4 0.00018 31.0 3.6 68 70-145 69-147 (157)
11 d1o6da_ c.116.1.3 (A:) Hypothe 65.3 2.1 0.00015 31.1 3.1 68 70-145 62-139 (147)
12 d1nxza2 c.116.1.5 (A:74-247) H 64.0 23 0.0017 25.7 10.8 103 8-114 10-135 (174)
13 d1ns5a_ c.116.1.3 (A:) Hypothe 60.9 7.6 0.00055 27.9 5.6 69 69-146 65-143 (153)
14 d1vh0a_ c.116.1.3 (A:) Hypothe 58.3 2.5 0.00018 30.9 2.4 49 92-146 100-148 (157)
15 d1jvna2 c.23.16.1 (A:-3-229) G 56.4 2.7 0.0002 32.3 2.4 77 1-79 3-87 (232)
16 d1sc6a2 c.23.12.1 (A:7-107,A:2 54.7 12 0.0009 26.1 5.8 78 53-133 6-86 (132)
17 d1v6za2 c.116.1.5 (A:67-228) H 53.7 17 0.0012 26.3 6.6 104 6-115 8-129 (162)
18 d2f06a1 d.58.18.11 (A:71-141) 43.4 32 0.0024 21.2 7.2 63 6-76 2-64 (71)
19 d1jx7a_ c.114.1.1 (A:) Hypothe 43.4 40 0.0029 22.2 6.9 88 1-94 1-95 (117)
20 d2f06a2 d.58.18.11 (A:1-70) Hy 33.7 17 0.0013 22.7 3.2 22 56-77 48-69 (70)
21 d1zhva2 d.58.18.8 (A:62-127) H 31.2 54 0.0039 20.1 5.6 58 7-75 6-66 (66)
22 d1jeoa_ c.80.1.3 (A:) Probable 30.9 30 0.0022 24.8 4.7 15 110-124 119-133 (177)
23 d8abpa_ c.93.1.1 (A:) L-arabin 29.8 54 0.004 24.4 6.4 55 6-78 34-88 (305)
24 d1vima_ c.80.1.3 (A:) Hypothet 28.5 31 0.0022 25.0 4.4 40 60-124 98-137 (192)
25 d1ka9h_ c.23.16.1 (H:) GAT sub 25.1 32 0.0023 24.2 3.8 73 5-79 3-81 (195)
26 d1u0la2 c.37.1.8 (A:69-293) Pr 24.8 75 0.0055 24.0 6.3 89 3-107 12-109 (225)
27 d2ivya1 d.58.58.1 (A:2-89) Hyp 24.4 22 0.0016 23.2 2.5 28 4-31 3-30 (88)
28 d1q7ra_ c.23.16.1 (A:) Hypothe 23.0 19 0.0014 26.3 2.3 66 14-79 15-85 (202)
29 d2fi0a1 a.248.1.1 (A:3-81) Hyp 22.0 19 0.0014 23.2 1.7 20 58-77 59-78 (79)
30 d1x7da_ c.2.1.13 (A:) Ornithin 21.7 18 0.0013 29.5 2.0 87 25-116 149-244 (340)
31 d1m3sa_ c.80.1.3 (A:) Hypothet 21.6 54 0.004 23.4 4.6 41 59-124 94-134 (186)
32 d1zpwx1 d.58.58.1 (X:2-83) Hyp 20.8 22 0.0016 22.9 1.9 27 3-29 3-29 (82)
33 d1y81a1 c.2.1.8 (A:6-121) Hypo 20.6 48 0.0035 22.2 3.9 38 62-99 19-63 (116)
34 d2r7ka1 c.30.1.8 (A:1-123) 5-f 20.1 48 0.0035 23.1 3.7 65 58-123 27-93 (123)
No 1
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.2e-39 Score=262.65 Aligned_cols=143 Identities=27% Similarity=0.368 Sum_probs=132.0
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCC--CCc---cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEE
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD--FNA---FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICG 76 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~--~~~---~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~ 76 (217)
.+++||||+|+||+|+|+|+|+|++||++.|+++++.+ +++ ++++|+.+++|+..+.++.++++.+++.++.+++
T Consensus 17 ~~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~~~~~~~~~~~r~s~g~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 96 (166)
T d1gz0a1 17 QPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVG 96 (166)
T ss_dssp SCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEeCCCCcchHHHHHHHHHhcCCceeeeecccccccchhhheeccCcceEeceeecCCHHHHHHHhccccccccc
Confidence 35899999999999999999999999999999987542 344 6899999999999999999999999999999999
Q ss_pred EEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 77 VEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
++. ....++.++++++|++||||+|+.|||+++++.||..|+|||.|. ++|||||+|++|+|||+.|+
T Consensus 97 ~~~-~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~~~-~~SLNvs~A~~I~lye~~rq 164 (166)
T d1gz0a1 97 TAG-EADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGS-VSSLNVSVATGICLFEAVRQ 164 (166)
T ss_dssp ECT-TCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSS-SCCCCHHHHHHHHHHHHHHH
T ss_pred ccc-cccccHHHhhccCCeEEEeccCcCCCCHHHHHhCCEEEEEcCcCC-CCceeHHHHHHHHHHHHHHc
Confidence 884 567789999999999999999999999999999999999999996 99999999999999999664
No 2
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.3e-38 Score=262.48 Aligned_cols=144 Identities=30% Similarity=0.377 Sum_probs=134.0
Q ss_pred CceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCc---cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEE
Q 040494 2 IESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNA---FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVE 78 (217)
Q Consensus 2 ~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~---~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~ 78 (217)
++++||||+|+||+|+|+|+|||++||++.++++++....+ ++++|+..++++..+.++.++++.+++.|+.+++++
T Consensus 21 ~~~~vvLd~i~~p~NiG~IiRta~afG~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~i~~~~ 100 (191)
T d1v2xa_ 21 PDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTVYATA 100 (191)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCCSSCSSGGGTSEEEEESSHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHhhccccccccCCccccceeeecchhhheeecccccchhhhHHHHHhhcCCcccccc
Confidence 57899999999999999999999999999999997653222 678899999999999999999999999999999999
Q ss_pred ecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 79 ITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 79 ~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
.+.++.++.+++++++++||||||+.|||+++++.||..|+|||.|. ++|||||+|+||+|||+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~lV~G~E~~Gls~~~l~~~d~~v~IPm~~~-~~SLNvsvAa~I~lyE~~rq 167 (191)
T d1v2xa_ 101 LREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGM-VQSLNVSVAAAVILFEAQRQ 167 (191)
T ss_dssp CCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSS-CSCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCeEEEEccccccccHHHHHhCCcEEEeCCCCC-cccccHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999995 99999999999999999664
No 3
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=5.1e-38 Score=250.95 Aligned_cols=141 Identities=24% Similarity=0.262 Sum_probs=126.5
Q ss_pred ceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCC-CCc---cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEE
Q 040494 3 ESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD-FNA---FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVE 78 (217)
Q Consensus 3 ~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~-~~~---~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~ 78 (217)
.++||||+++||+|+|+|+|||++||++.|++.++.. +++ ++++|+.+++++.. .+..++++.+++.|+.+++++
T Consensus 11 ~~~lvld~i~dP~NlGai~Rta~~fG~~~v~~~~~~~~~~~~~~r~s~g~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 89 (158)
T d1ipaa1 11 ALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQVIRNSTGVVFSLRTLA-ASESEVLDWIKQHNLPLVATT 89 (158)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESCCCTTCHHHHHHTTTGGGTSCEEE-ECHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEeCCCCCchHHHHHHHHHhhccchhhhcccccccchhhheecccceeeecccc-cchHHHHHHHHhhcccccccc
Confidence 4899999999999999999999999999999886543 444 68999999999875 556889999999999999998
Q ss_pred ecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 79 ITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 79 ~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
. .....+++.++++|++||||+|+.|||+++++.||.+|+|||.|. ++|||||+|++|+|||+.|+
T Consensus 90 ~-~~~~~~~~~~~~~~~~lvfG~E~~Gls~~~l~~~d~~v~IP~~g~-~~SLNvs~A~aI~lyE~~RQ 155 (158)
T d1ipaa1 90 P-HAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQ-ADSLNVSVSAALLLYEALRQ 155 (158)
T ss_dssp T-TCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSS-CCCCCHHHHHHHHHHHHHHH
T ss_pred c-cccccchhcccCcceEEEEcccccccCHHHHHhCCEEEEEcCCCC-CCeEeHHHHHHHHHHHHHHh
Confidence 6 444567788999999999999999999999999999999999996 99999999999999999654
No 4
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=100.00 E-value=1.6e-33 Score=223.42 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=114.9
Q ss_pred eEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCc------cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEE
Q 040494 4 SYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNA------FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGV 77 (217)
Q Consensus 4 ~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~------~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~ 77 (217)
+.|||++|++|+|+|+|+|||++||++.+++.. +..++ +.+.+..+..+.....+........+ ...+..
T Consensus 2 ~~ivL~~p~~P~NlGai~Rta~afGv~~v~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 77 (156)
T d1mxia_ 2 LDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEP-LGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEK---PKRLFA 77 (156)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHTCEEEEESS-CSSCTTCHHHHTTSCCGGGSSSCEEESSHHHHHHHHC---CSEEEE
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHcCCcEEEEec-CCCcccchhhhhcccccceeeeeeeechhhhhhhhhh---ccceee
Confidence 468999999999999999999999997666554 33322 34566677788887777776665543 233344
Q ss_pred EecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhh--CCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhccCc
Q 040494 78 EITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEI--CDFFVYIPQYGGGTASLNVTVAASIVLHHFGVWAGF 149 (217)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~--cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~~~~ 149 (217)
..+.++.++.+.+++.+++||||||++|||+++++. ||.+|+|||.|. ++|||||+|++|+|||+.|+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~-~~SLNvs~A~aI~lyE~~RQ~~~ 150 (156)
T d1mxia_ 78 LTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGY 150 (156)
T ss_dssp ECTTCSSBGGGSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTT-CCCCCHHHHHHHHHHHHHHHTTT
T ss_pred eecccccchhccccccceEEEEccCCCcCCHHHHhhccCCeEEEcCCCCC-CCeeEHHHHHHHHHHHHHHhcCC
Confidence 446788899999999999999999999999999974 999999999996 99999999999999999776554
No 5
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=95.36 E-value=0.03 Score=42.73 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=78.0
Q ss_pred HHHHhHHHCCCcEEEeCCCCCCc---------cccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEEecCCccc----c
Q 040494 20 LARSATAFGVSEMILVGRRDFNA---------FGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVEITDNAVD----V 86 (217)
Q Consensus 20 I~Rsa~afGv~~v~lv~~~~~~~---------~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~~~~~~~~----l 86 (217)
+.-+|-|||++++++.+ . |+ -..-|..+.+. ..+|...+ ++.+..++-++.- ..+ +
T Consensus 22 vaLtARAfGA~~i~l~~-~--D~~~~etv~~V~~r~GG~f~~~---~~~~~~~~---~~~~G~vVHLTMY--G~~~~~~~ 90 (167)
T d2o3aa1 22 VALTARAFGAKGIYFDT-E--DKSVFESVRDVVERWGGDFFIK---AVSWKKLL---REFDGLKVHLTMY--GIPLPQKL 90 (167)
T ss_dssp HHHHHHHTTCSEEEESS-C--CHHHHHHHHHHHHHHCSCCEEE---ECCHHHHH---HHCCSEEEEEEEE--EEEHHHHH
T ss_pred HHHHHHHhcCCeEEEcC-C--chhHHHHHHHHHHhhCCceEEE---ecCHHHHh---hhcCCEEEEeecC--CCchHHHh
Confidence 45688899999988843 2 33 12446666554 24665555 4556666666642 223 3
Q ss_pred cccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhccCchhhhhcCCccee
Q 040494 87 TQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVWAGFSERTRDGNKYVV 161 (217)
Q Consensus 87 ~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~~~~~~R~r~g~kf~~ 161 (217)
.+++-..+.++|+|.|. +|.++.++||+-|.|-..+. | -| .|.||+|-.+. ..--+|...+.|..+
T Consensus 91 ~~Ir~~~~ilvVVGaeK--VP~evyelADyNVaVgNQPH---S-EV-AALAiFLDrl~--G~~l~~~F~~akl~V 156 (167)
T d2o3aa1 91 EEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPH---S-EV-AALAVFLDRVL--GKVFDISFDDAKIKV 156 (167)
T ss_dssp HHHHTCSEEEEEEC------CTTHHHHSSEEEESSSSCC---C-HH-HHHHHHHHHHT--CCTTTCCCTTCSSEE
T ss_pred hhcccCCCEEEEECCcc--CCHHHHhhcccceecCCCCc---H-HH-HHHHHHHHHhh--ChHhhccCCCCeEEE
Confidence 34566789999999985 99999999999999966653 2 23 68899999884 333355566665544
No 6
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]}
Probab=94.56 E-value=0.12 Score=40.62 Aligned_cols=78 Identities=9% Similarity=0.090 Sum_probs=55.5
Q ss_pred eCCHHHHHHHhhhCCCcEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhC----CcEEEEcCCCCCCCcccH
Q 040494 57 FHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEIC----DFFVYIPQYGGGTASLNV 132 (217)
Q Consensus 57 ~~s~~~~l~~l~~~g~~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~c----D~~v~IP~~g~~~~SLNV 132 (217)
-.+++++++.+. +++++|.++. ...++.+.+++.+.+||+|- ..|++++..+.- +..|++ | ..+|=-
T Consensus 113 ~~~~e~~l~e~~-e~~~~~~Lde--~G~~i~~~~~~~~~~FILsD-h~~~~~~e~~~L~~~g~~~iSL---G--p~~L~a 183 (201)
T d2qwva1 113 TISFEALLGELA-EHHSLYMMDK--KGDSIRDIKIGPNPCFILTD-HIPMPKKSGNSMKRLGVEKISL---G--PKMLFA 183 (201)
T ss_dssp CCCHHHHHHHHH-TTSEEEEEEE--EEEETTTSCCCSSEEEEECC-----------CTTTTTCEEEEC---C--SSCCCH
T ss_pred CCCHHHHHHHHh-cCCcEEEECC--CCCchhhccCCCCCEEEEeC-CCCCCHHHHHHHHhcCCeeEee---c--cHHHHH
Confidence 368999999984 6789998884 56789999999999999996 899999987653 345665 3 468999
Q ss_pred HHHHHHHHHHH
Q 040494 133 TVAASIVLHHF 143 (217)
Q Consensus 133 svAaaIvL~e~ 143 (217)
+++.+|+-|+|
T Consensus 184 shcI~ivH~~L 194 (201)
T d2qwva1 184 SQCVTLIHNEI 194 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 99999999998
No 7
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=89.12 E-value=1.3 Score=34.09 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=61.5
Q ss_pred eCCHHHHHHHhhhCCCcEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhh----CCcEEEEcCCCCCCCcccH
Q 040494 57 FHSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEI----CDFFVYIPQYGGGTASLNV 132 (217)
Q Consensus 57 ~~s~~~~l~~l~~~g~~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~----cD~~v~IP~~g~~~~SLNV 132 (217)
-.+++++++.+.+ +++++.++ +...++.+..++++.+||+|- ..|++++..+. ....+++ | ..+|=-
T Consensus 108 ~~~~e~~l~e~~~-~~~~~~Ld--~~G~~i~~~~~~~~~~FILsD-h~~l~~~e~~~L~~~~~~~iSL---G--p~~L~a 178 (194)
T d2qmma1 108 RKGLEELIEELSE-KYSIIYLK--EDGVDISNAQLPPNPLFVIGD-HEGLTEEQEKVVERYAALKLSL---S--PLSLLA 178 (194)
T ss_dssp CCCHHHHHHHHHH-HSEEEEEE--EEEEEGGGSCCCSSEEEEEEC-TTCCCHHHHHHHHTTCSEEEEC---C--SSCCCH
T ss_pred CCCHHHHHHHHhc-cCcEEEEC--CCCCcccccccCCCCeEEEeC-CCCCChHHHHHHhhcCCeeEec---c--ccccch
Confidence 3689999998854 56777666 366889999999999999996 89999987654 2334554 3 468999
Q ss_pred HHHHHHHHHHH
Q 040494 133 TVAASIVLHHF 143 (217)
Q Consensus 133 svAaaIvL~e~ 143 (217)
+++.+|+-|++
T Consensus 179 ~hcI~ivh~~L 189 (194)
T d2qmma1 179 EQCVVIAHHHL 189 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHhHHHHHH
Confidence 99999999988
No 8
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=87.38 E-value=3.5 Score=30.75 Aligned_cols=138 Identities=16% Similarity=0.107 Sum_probs=81.2
Q ss_pred eEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCC----CCc--------c-------c-cCCCcccee-eEEeCCHHH
Q 040494 4 SYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRD----FNA--------F-------G-SHGSTSHVN-FRHFHSLSD 62 (217)
Q Consensus 4 ~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~----~~~--------~-------~-s~Ga~~~~~-i~~~~s~~~ 62 (217)
+.|+. .+-++.++-.+++-|.=+||+.++.+.... ++. | + -.....++| +....++.+
T Consensus 8 i~L~~-~l~K~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~~~~r~~~i~~eA~eQsgr~~lP~i~~~~~l~~ 86 (180)
T d1vhka2 8 VYIAS-GLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQ 86 (180)
T ss_dssp EEEEE-ECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHH
T ss_pred EEEEE-eecCcchHHHHHHHHHhhCcceEEeeecccccccccchhhhhhHHHHHHHHHHHHHhhccccccccccCCCHHH
Confidence 34444 566789999999999999999999985331 110 0 1 122344555 555689999
Q ss_pred HHHHhhhCCCcEEEEEecCCccc-------ccccCCCCCEEEEEcCCCCCCCHHHHhhCC--cEEEEcCCCCCCCccc-H
Q 040494 63 ARVFLKSKDCDICGVEITDNAVD-------VTQHPFKKSTAFLLGNEGMGLSAKECEICD--FFVYIPQYGGGTASLN-V 132 (217)
Q Consensus 63 ~l~~l~~~g~~v~~~~~~~~~~~-------l~~~~~~~~~alV~GnE~~GLs~~~l~~cD--~~v~IP~~g~~~~SLN-V 132 (217)
+++.+...+..++.......... ..+.+-.+++++++|.| -|.|++.++... .+..|-....-..+=. +
T Consensus 87 ~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~~g~~~v~LG~~ILR~ETA~ 165 (180)
T d1vhka2 87 LLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPE-GGLTEAEVERLTEQDGVTCGLGPRILRTETAP 165 (180)
T ss_dssp HHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCT-TCCCHHHHHHHHHTTCEEECCCSSCCCTTTHH
T ss_pred HHHhccccccEEEEecccccccchhHHHHHHhccCCCCeEEEEecCC-CCCCHHHHHHHHHCCCEEEECCCCcchHHhHH
Confidence 99998876555554432111111 12344567889999999 699999887642 2333433222122222 2
Q ss_pred HHHHHHHHHHH
Q 040494 133 TVAASIVLHHF 143 (217)
Q Consensus 133 svAaaIvL~e~ 143 (217)
.+|++++.|++
T Consensus 166 i~als~l~~~~ 176 (180)
T d1vhka2 166 LYALSAISYQT 176 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 24566666665
No 9
>d1k3ra2 c.116.1.2 (A:1-92,A:164-262) Hypothetical protein MTH1 (MT0001), dimerisation domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=84.07 E-value=2.2 Score=32.74 Aligned_cols=117 Identities=22% Similarity=0.280 Sum_probs=66.1
Q ss_pred cHHHHHHHhHHHCCCcEEEeCCCCCCc-----------------c----------ccCCC------ccceeeEEeCCHHH
Q 040494 16 NVGTLARSATAFGVSEMILVGRRDFNA-----------------F----------GSHGS------TSHVNFRHFHSLSD 62 (217)
Q Consensus 16 NlG~I~Rsa~afGv~~v~lv~~~~~~~-----------------~----------~s~Ga------~~~~~i~~~~s~~~ 62 (217)
-+|.|+|+|.-|+++.|++.++..-++ | .-.|. ..|+.... ..+.+
T Consensus 27 ~~g~iARa~~if~Vdeivv~dd~~~~~~~~l~~iL~YletP~YLRK~lfp~~~~Lk~aGlLpPL~~p~hv~~~~-~~~~~ 105 (191)
T d1k3ra2 27 KVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILPPLRTGYEVLDTR-RNLAE 105 (191)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSCCCHHHHHHHHHHHHSCHHHHHHHCCCCGGGGGGGGCCCCCCCCEEEEEE-EEHHH
T ss_pred HHHHHHHHHHhccccEEEEEcCCCccHhHHHHHHHHHHcCCcccccccCCCCcccccccCCCCccCCccccccc-ccccc
Confidence 369999999999999999986432111 0 11222 12221111 23444
Q ss_pred HHHHhhhCCCc-EEEEEecCCcccccc--------cCCCCCEEEEEcCCCCCCCHHHHhhCCcEEE-EcCCCCCCCcccH
Q 040494 63 ARVFLKSKDCD-ICGVEITDNAVDVTQ--------HPFKKSTAFLLGNEGMGLSAKECEICDFFVY-IPQYGGGTASLNV 132 (217)
Q Consensus 63 ~l~~l~~~g~~-v~~~~~~~~~~~l~~--------~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~-IP~~g~~~~SLNV 132 (217)
+ +.+.||. +++++ ..+ .++.+ .+-.+...+|||+-..||.+- ..|..+- +|..| .+..=.
T Consensus 106 ~---l~~~g~d~~I~TS-r~G-~~i~~~~~~~~~~~~~~~~~lvVFGgP~~Gl~~i---~~D~~vNt~P~QG--srtIRT 175 (191)
T d1k3ra2 106 S---LKTVGADVVVATS-RNA-SPITSILDEVKTRMRGAREAAILFGGPYKGLPEI---DADIWVNTLPGQC--TETVRT 175 (191)
T ss_dssp H---HHHHCCSEEEEEC-TTS-CBTTTSHHHHHHHHTTCSEEEEECCCSSSCCCSC---CCSEEEBSSTTCS--SSCCCH
T ss_pred c---cccCCCCeEEEeC-CCC-cChhhhhhhccccccCCCeEEEEECCcccCchhh---hCCeEEEcCCCCC--CcceeH
Confidence 3 4556786 45555 333 34432 223468899999977999753 2455443 56665 455555
Q ss_pred HHHHHHHHHHH
Q 040494 133 TVAASIVLHHF 143 (217)
Q Consensus 133 svAaaIvL~e~ 143 (217)
==|.-|.|.-+
T Consensus 176 EEAv~itLa~L 186 (191)
T d1k3ra2 176 EEAVLATLSVF 186 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 10
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=65.64 E-value=2.4 Score=30.96 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=45.0
Q ss_pred CCCcEEEEEecCCcccccccCC-----------CCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHH
Q 040494 70 KDCDICGVEITDNAVDVTQHPF-----------KKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASI 138 (217)
Q Consensus 70 ~g~~v~~~~~~~~~~~l~~~~~-----------~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaI 138 (217)
.+-.+|+++.. ...+....| .++++||+|. ..|+++++++.||..+++--- .+.=-.|--|
T Consensus 69 ~~~~~I~LDe~--Gk~~sS~~fA~~l~~~~~~g~~~i~FiIGG-a~G~~~~~~~~a~~~~Sls~m-----T~pH~l~r~~ 140 (157)
T d1to0a_ 69 PDAHVIALAIE--GKMKTSEELADTIDKLATYGKSKVTFVIGG-SLGLSDTVMKRADEKLSFSKM-----TFPHQLMRLI 140 (157)
T ss_dssp TTSEEEEEEEE--EEECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCCCHHHHHHCSEEEESCSS-----CCCHHHHHHH
T ss_pred CCCeEEEeccc--hhhhhHHHHHHHHHHHHhcCCcceEEEECC-CCCCCHHHHhhcCcEEecccC-----CchHHHHHHH
Confidence 45567777742 334433221 3569999999 899999999999988876322 2444566666
Q ss_pred HHHHHHh
Q 040494 139 VLHHFGV 145 (217)
Q Consensus 139 vL~e~~~ 145 (217)
++-+++|
T Consensus 141 l~EQiYR 147 (157)
T d1to0a_ 141 LVEQIYR 147 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
No 11
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=65.30 E-value=2.1 Score=31.06 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=44.7
Q ss_pred CCCcEEEEEecCCcccccccCC----------CCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHH
Q 040494 70 KDCDICGVEITDNAVDVTQHPF----------KKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIV 139 (217)
Q Consensus 70 ~g~~v~~~~~~~~~~~l~~~~~----------~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIv 139 (217)
.+-.+++++. ..+.+....| .++++||+|. ..|+++++++.||..++.-- + .+.=-.|--|+
T Consensus 62 ~~~~~I~LDe--~Gk~~sS~~fA~~l~~~~~~g~~i~FiIGG-a~Gl~~~~~~~a~~~lSls~--m---T~pH~l~rv~l 133 (147)
T d1o6da_ 62 PGSFVMVMDK--RGEEVSSEEFADFLKDLEMKGKDITILIGG-PYGLNEEIFAKAHRVFSLSK--M---TFTHGMTVLIV 133 (147)
T ss_dssp TTCEEEEEEE--EEEECCHHHHHHHHHHHHHHTCCEEEEECC-TTCCCGGGGGGCSEEEECCS--S---CCCHHHHHHHH
T ss_pred CCCEEEEEec--ccCCcCCHHHHHHHHHHHhcCCCCEEEEEC-CCCCCHHHHHhcCcEEeCCc--C---cchHHHHHHHH
Confidence 3456677764 2333433222 3679999998 89999999999998877532 1 24445666666
Q ss_pred HHHHHh
Q 040494 140 LHHFGV 145 (217)
Q Consensus 140 L~e~~~ 145 (217)
+-+++|
T Consensus 134 ~EQlYR 139 (147)
T d1o6da_ 134 LEQIFR 139 (147)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 12
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=63.98 E-value=23 Score=25.68 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=63.8
Q ss_pred EeCCCCcccHHHHHHHhHHHCCCcEEEeCCC-C---CCc--------c-------c-cCCCccceeeE-EeCCHHHHHHH
Q 040494 8 VHNIAKRHNVGTLARSATAFGVSEMILVGRR-D---FNA--------F-------G-SHGSTSHVNFR-HFHSLSDARVF 66 (217)
Q Consensus 8 Ld~v~~p~NlG~I~Rsa~afGv~~v~lv~~~-~---~~~--------~-------~-s~Ga~~~~~i~-~~~s~~~~l~~ 66 (217)
+-.+-++.++=.|++-|.=+||+.++.+-.. + ++. | + -.....++|-. ...+++++++.
T Consensus 10 ~~al~k~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~k~~r~~~i~~~A~eQsgr~~lP~i~~~~~l~~~l~~ 89 (174)
T d1nxza2 10 GQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAE 89 (174)
T ss_dssp EEECCSSSCHHHHHHHHHHTTCCEEEEEECTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHHHHC
T ss_pred EEeecCcchHHHHHHHHHhhCcceEEechHhhcccccchhHHHhhHHHHHHHHHHHHHhcCccccccccchhhHHHHHhh
Confidence 3445578999999999999999999987432 1 221 0 0 11224556544 35678887753
Q ss_pred hhhCCCcEEEEEecCCcccccccC--CCCCEEEEEcCCCCCCCHHHHhhC
Q 040494 67 LKSKDCDICGVEITDNAVDVTQHP--FKKSTAFLLGNEGMGLSAKECEIC 114 (217)
Q Consensus 67 l~~~g~~v~~~~~~~~~~~l~~~~--~~~~~alV~GnE~~GLs~~~l~~c 114 (217)
. ...++..........+..++ ..+++++++|.| -|.|++.++..
T Consensus 90 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~iiIGPE-GGfs~~E~~~~ 135 (174)
T d1nxza2 90 N---DGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSE-GGLSAQEIAQT 135 (174)
T ss_dssp C---SSCEEEEECTTCSCBGGGCCCCCTTCEEEEECCT-TCCCHHHHHHH
T ss_pred h---cchhhhhhhhhhhhhhhhhccCCCCcEEEEEcCC-cCcCHHHHHHH
Confidence 2 22333222223334444433 357899999999 69999988764
No 13
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=60.93 E-value=7.6 Score=27.91 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=46.4
Q ss_pred hCCCcEEEEEecCCcccccccCC----------CCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHH
Q 040494 69 SKDCDICGVEITDNAVDVTQHPF----------KKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASI 138 (217)
Q Consensus 69 ~~g~~v~~~~~~~~~~~l~~~~~----------~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaI 138 (217)
..+ .+|+++. ..+.++...| ..+++||+|. ..|+++++++.||..+++-- + .+.=-.|--|
T Consensus 65 ~~~-~~I~LDe--~Gk~~sS~~fA~~l~~~~~~g~~i~fiIGG-a~G~~~~~~~~a~~~lsls~--m---T~pH~lar~~ 135 (153)
T d1ns5a_ 65 GKN-RIVTLDI--PGKPWDTPQLAAELERWKLDGRDVSLLIGG-PEGLSPACKAAAEQSWSLSA--L---TLPHPLVRVL 135 (153)
T ss_dssp TTS-EEEEEEE--EEECCCHHHHHHHHHHHHHHCSCEEEEECB-TTBCCHHHHHHCSEEECCCS--S---CCCHHHHHHH
T ss_pred cCC-eEEEeec--cccccChHHHHHHHHHHhhccCcEEEEEEc-CCCCCHHHHHhhCcEEeccc--C---CchHHHHHHH
Confidence 344 4677774 3334443322 3679999999 89999999999998877522 2 3455667777
Q ss_pred HHHHHHhc
Q 040494 139 VLHHFGVW 146 (217)
Q Consensus 139 vL~e~~~~ 146 (217)
++-+++|.
T Consensus 136 l~EQlYRa 143 (153)
T d1ns5a_ 136 VAESLYRA 143 (153)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777553
No 14
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=58.33 E-value=2.5 Score=30.92 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCcccHHHHHHHHHHHHHhc
Q 040494 92 KKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVW 146 (217)
Q Consensus 92 ~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~SLNVsvAaaIvL~e~~~~ 146 (217)
.++++||+|. ..|+++++++.||..++.-- + .+.=-.|--|++-+++|.
T Consensus 100 ~~~i~FiIGG-a~G~~~~~~~~a~~~lSls~--m---T~pH~larv~l~EQlYRa 148 (157)
T d1vh0a_ 100 QSDFVFVIGG-SNGLHKDVLQRSNYALSFSK--M---TFPHQMMRVVLIEQVYRA 148 (157)
T ss_dssp CCEEEEEECB-TTBCCHHHHHHCSEEECSCS--S---CCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEEcC-CCccCHHHHhhcCCEEECcc--C---CchhHHHHHHHHHHHHHH
Confidence 3578999999 79999999999998886522 1 344466777777777553
No 15
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Probab=56.41 E-value=2.7 Score=32.33 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=45.1
Q ss_pred CCceEEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCcccc-------CCC-ccceeeEEeCCHHHHHHHhhhCCC
Q 040494 1 MIESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGS-------HGS-TSHVNFRHFHSLSDARVFLKSKDC 72 (217)
Q Consensus 1 ~~~~~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~~~s-------~Ga-~~~~~i~~~~s~~~~l~~l~~~g~ 72 (217)
+|+.++|+| ...+|+.++.|+...+|++..++..+...+.... .|+ ..-+....-..+.+.+....+.|.
T Consensus 3 ~m~~I~IiD--yg~gN~~Sv~~al~~lG~~~~ii~~~~~~~l~~~d~IILPGvG~f~~~m~~L~~~~l~~~i~~~~~~~~ 80 (232)
T d1jvna2 3 HMPVVHVID--VESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGK 80 (232)
T ss_dssp SSCEEEEEC--CSCSCCHHHHHHHHHTTCEEEEESSGGGCCSTTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCEEEEEE--CCCcHHHHHHHHHHHcCCCeEEEECccHhhhhcCCeEEEccCCCccchhhhhcccchhhhhhhhhcCCc
Confidence 367788888 7789999999999999997655543322221110 111 000000011234455555556788
Q ss_pred cEEEEEe
Q 040494 73 DICGVEI 79 (217)
Q Consensus 73 ~v~~~~~ 79 (217)
+|+|+-.
T Consensus 81 pilGICl 87 (232)
T d1jvna2 81 PIMGICV 87 (232)
T ss_dssp CEEEEEH
T ss_pred EEEeccc
Confidence 9999874
No 16
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=54.73 E-value=12 Score=26.13 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=38.5
Q ss_pred eeEEeCCH-HHHHHHhhhCCCcEEEEEecCCccccccc--CCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCCCCCCc
Q 040494 53 NFRHFHSL-SDARVFLKSKDCDICGVEITDNAVDVTQH--PFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYGGGTAS 129 (217)
Q Consensus 53 ~i~~~~s~-~~~l~~l~~~g~~v~~~~~~~~~~~l~~~--~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g~~~~S 129 (217)
.+...+.+ +++++.|++.|+.++-... ...+-.++ ....--++++.+ ...++.++++.|...-.|-..|.|++.
T Consensus 6 KILv~d~i~~~a~~~L~~~g~~~v~~~~--~~~~~~~l~~~~~~~d~ii~~~-~~~i~~~~i~~~p~Lk~I~~~gvG~D~ 82 (132)
T d1sc6a2 6 KFLLVEGVHQKALESLRAAGYTNIEFHK--GALDDEQLKESIRDAHFIGLRS-RTHLTEDVINAAEKLVAIGAFAIGTNQ 82 (132)
T ss_dssp CEEECSCCCHHHHHHHHHTTCCCEEECS--SCCCHHHHHHHTTSCSEEEECS-SCCBCHHHHHHCSSCCEEEECSSCCTT
T ss_pred EEEEECCCCHHHHHHHHhCCCEEEEeCC--CCCCHHHHHHhhcCCcEEEEec-ccccChhhhhccccceeEEEecccccc
Confidence 34444443 5667778888876553321 11111110 012222444433 456888888887755445544444554
Q ss_pred ccHH
Q 040494 130 LNVT 133 (217)
Q Consensus 130 LNVs 133 (217)
.++.
T Consensus 83 IDl~ 86 (132)
T d1sc6a2 83 VDLD 86 (132)
T ss_dssp BCHH
T ss_pred cCHH
Confidence 4443
No 17
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=53.72 E-value=17 Score=26.25 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=55.6
Q ss_pred EEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCC-CCCc--------c--------ccCCCccceeeEE-eCCHHHHHHHh
Q 040494 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRR-DFNA--------F--------GSHGSTSHVNFRH-FHSLSDARVFL 67 (217)
Q Consensus 6 vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~-~~~~--------~--------~s~Ga~~~~~i~~-~~s~~~~l~~l 67 (217)
.++-.+-++.++-.|++-|.=+||+.++.+-.. +... | .-.....++|-.. ..++.++++
T Consensus 8 ~L~~~l~K~~~~~~il~k~tELGV~~i~p~~sers~~k~~~~~k~~r~~~i~~~A~~Qs~r~~lP~i~~~~~l~~~~~-- 85 (162)
T d1v6za2 8 VLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQ-- 85 (162)
T ss_dssp EEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCC--
T ss_pred EEEEeccCchHHHHHHHHHHhhCcCEEEEEEecccchhhhchhhhhHHHHHHHHHHHhccccCCCccccccCHHHHhh--
Confidence 344455678999999999999999999876322 2110 0 0111223333221 122222211
Q ss_pred hhCCCcEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCC
Q 040494 68 KSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICD 115 (217)
Q Consensus 68 ~~~g~~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD 115 (217)
.. ..+..............+..+++++++|.| -|.|++.++...
T Consensus 86 --~~-~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~Ei~~l~ 129 (162)
T d1v6za2 86 --VA-QGLVAHVGATARVREVLDPEKPLALAVGPE-GGFAEEEVALLE 129 (162)
T ss_dssp --CS-SEEEECTTCCCCHHHHCCTTSCEEEEECCT-TCCCHHHHHHHH
T ss_pred --hc-chhhccccccccchhhhcccCcceEEEecc-CCCCHHHHHHHH
Confidence 11 111122111111112233457899999999 799999888754
No 18
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=43.38 E-value=32 Score=21.16 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=42.9
Q ss_pred EEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCccccCCCccceeeEEeCCHHHHHHHhhhCCCcEEE
Q 040494 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICG 76 (217)
Q Consensus 6 vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~ 76 (217)
+.+.=+..||-+..+++.-.-.|+.=..+- . +. +. ..-+=+.++++.+.+.+.|+++||+++.
T Consensus 2 iaV~v~d~pG~L~~v~~~L~~~~InI~~~y-~--~~---~~--~~~~~vl~vdd~~~a~~~L~~~G~~vl~ 64 (71)
T d2f06a1 2 VGISCPNVPGALAKVLGFLSAEGVFIEYMY-S--FA---NN--NVANVVIRPSNMDKCIEVLKEKKVDLLA 64 (71)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEE-E--EE---ET--TEEEEEEEESCHHHHHHHHHHTTCEEEC
T ss_pred EEEEecCCccHHHHHHHHHHHCCCCEEEEE-E--Ec---CC--CcEEEEEEECCHHHHHHHHHHCCCEEEc
Confidence 344456778999999999999888632322 1 11 11 2223334468999999999999999874
No 19
>d1jx7a_ c.114.1.1 (A:) Hypothetical protein YchN {Escherichia coli [TaxId: 562]}
Probab=43.36 E-value=40 Score=22.22 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=51.2
Q ss_pred CCceEEEEe-CCCCcccHHHHHHHhHHH---CC--C-cEEEeCCCCCCccccCCCccceeeEEeCCHHHHHHHhhhCCCc
Q 040494 1 MIESYVVVH-NIAKRHNVGTLARSATAF---GV--S-EMILVGRRDFNAFGSHGSTSHVNFRHFHSLSDARVFLKSKDCD 73 (217)
Q Consensus 1 ~~~~~vvLd-~v~~p~NlG~I~Rsa~af---Gv--~-~v~lv~~~~~~~~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~ 73 (217)
|-++.+++. .|.++...=+.+|.|.++ |- + .|++.++.-+.... +. .|- ...++.+.++.|.+.|.+
T Consensus 1 M~k~~ii~~~~P~~~~~~~~al~~A~a~~~~~~~~eV~vff~~dgV~~~~~--~~---~~~-~~~~~~~~l~~l~~~gv~ 74 (117)
T d1jx7a_ 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLR--GQ---KPG-EGYNIQQMLEILTAQNVP 74 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGGBS--CC---CCS-SSCCHHHHHHHHHHTTCC
T ss_pred CcEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEecchHHHhhc--cC---Ccc-ccccHHHHHHHHHHCCCE
Confidence 445555554 676777788888888654 54 3 56766544222111 10 011 136899999999999999
Q ss_pred EEEEEecCCcccccccCCCCC
Q 040494 74 ICGVEITDNAVDVTQHPFKKS 94 (217)
Q Consensus 74 v~~~~~~~~~~~l~~~~~~~~ 94 (217)
++.....-...-+.+-++...
T Consensus 75 v~vC~~~~~~rGi~~~~l~~g 95 (117)
T d1jx7a_ 75 VKLCKTCTDGRGISTLPLIDG 95 (117)
T ss_dssp EEEEHHHHHHTTCTTSCBCTT
T ss_pred EEEEHHHHHHhCCChhhhccc
Confidence 888764323333444444333
No 20
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=33.71 E-value=17 Score=22.68 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=18.9
Q ss_pred EeCCHHHHHHHhhhCCCcEEEE
Q 040494 56 HFHSLSDARVFLKSKDCDICGV 77 (217)
Q Consensus 56 ~~~s~~~~l~~l~~~g~~v~~~ 77 (217)
..++.+++.+.|+++||.+..+
T Consensus 48 iv~~~e~a~~~L~~~g~~v~~~ 69 (70)
T d2f06a2 48 IVSDPDKAYKALKDNHFAVNIT 69 (70)
T ss_dssp EESCHHHHHHHHHHTTCCEEEE
T ss_pred EECChHHHHHHHHHCCCEEecC
Confidence 4689999999999999987654
No 21
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=31.17 E-value=54 Score=20.11 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=35.3
Q ss_pred EEeCCCCcccHHHHHHHh---HHHCCCcEEEeCCCCCCccccCCCccceeeEEeCCHHHHHHHhhhCCCcEE
Q 040494 7 VVHNIAKRHNVGTLARSA---TAFGVSEMILVGRRDFNAFGSHGSTSHVNFRHFHSLSDARVFLKSKDCDIC 75 (217)
Q Consensus 7 vLd~v~~p~NlG~I~Rsa---~afGv~~v~lv~~~~~~~~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~ 75 (217)
-++.+.+-..+|-+.+.+ +..|+.-..+.. |+ ..|+ ++...+++++++.|++.||+|+
T Consensus 6 ~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSt---y~-------~D~i-lVp~~~~~~A~~~L~~~g~~v~ 66 (66)
T d1zhva2 6 KFQGPFAFDETGIVLSVISPLSTNGIGIFVVST---FD-------GDHL-LVRSNDLEKTADLLANAGHSLL 66 (66)
T ss_dssp EECSCCCCSSCCHHHHHHHHHHTTTCCCEEEEC---SS-------CEEE-EEEGGGHHHHHHHHHHTTCEEE
T ss_pred EEccCCCchhHhHHHHHHHHHHHCCCCeEEEEe---ee-------ccEE-EEEHHHHHHHHHHHHHccCEeC
Confidence 345555555555444444 444565333332 22 4444 3456899999999999999985
No 22
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=30.88 E-value=30 Score=24.79 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=10.4
Q ss_pred HHhhCCcEEEEcCCC
Q 040494 110 ECEICDFFVYIPQYG 124 (217)
Q Consensus 110 ~l~~cD~~v~IP~~g 124 (217)
+.+.||.++.+|...
T Consensus 119 l~~~aD~~l~~~~~~ 133 (177)
T d1jeoa_ 119 VVEFADLTIPLEVKK 133 (177)
T ss_dssp GGGGCSEEEECCCCC
T ss_pred HHHhcCceEEEeecc
Confidence 446788888777654
No 23
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=29.75 E-value=54 Score=24.37 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=39.2
Q ss_pred EEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCccccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEEE
Q 040494 6 VVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGVE 78 (217)
Q Consensus 6 vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~~~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~~ 78 (217)
+++.+..|+.+-=..++.+-+.|+++|++.... .....+.++.+++.|.+|+.+.
T Consensus 34 ~i~~~~~d~~~q~~~i~~li~~~vDgiIi~~~~------------------~~~~~~~~~~a~~~giPVV~~d 88 (305)
T d8abpa_ 34 VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPD------------------PKLGSAIVAKARGYDMKVIAVD 88 (305)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTTCCEEEEECSC------------------GGGHHHHHHHHHHTTCEEEEES
T ss_pred EEEEcCCCHHHHHHHHHHHHHcCCCEEEEcccc------------------ccccHHHHHHHHhcCCCEEEEc
Confidence 344555666666777777777777777776321 1346788899999999999885
No 24
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=28.52 E-value=31 Score=25.01 Aligned_cols=40 Identities=8% Similarity=0.048 Sum_probs=27.1
Q ss_pred HHHHHHHhhhCCCcEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCC
Q 040494 60 LSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYG 124 (217)
Q Consensus 60 ~~~~l~~l~~~g~~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g 124 (217)
+.++++.++++|.++++++...++. +.+.||.++.||...
T Consensus 98 ~i~~~~~ak~~g~~vI~IT~~~~s~-------------------------l~~~ad~~l~i~~~~ 137 (192)
T d1vima_ 98 VVNISKKAKDIGSKLVAVTGKRDSS-------------------------LAKMADVVMVVKGKM 137 (192)
T ss_dssp HHHHHHHHHHHTCEEEEEESCTTSH-------------------------HHHHCSEEEECCSSC
T ss_pred hHHHHHHHHhhcccceeeeeccccc-------------------------cccccceEEEecCCc
Confidence 4555666667777777776432221 577899999999764
No 25
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}
Probab=25.05 E-value=32 Score=24.16 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=41.8
Q ss_pred EEEEeCCCCcccHHHHHHHhHHHCCCcEEEeCCCCCCc---c--ccCCCc-cceeeEEeCCHHHHHHHhhhCCCcEEEEE
Q 040494 5 YVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNA---F--GSHGST-SHVNFRHFHSLSDARVFLKSKDCDICGVE 78 (217)
Q Consensus 5 ~vvLd~v~~p~NlG~I~Rsa~afGv~~v~lv~~~~~~~---~--~s~Ga~-~~~~i~~~~s~~~~l~~l~~~g~~v~~~~ 78 (217)
++++| ...+|+.+|.|...-+|++..++..+..... - ..-|+. .-+....-..+...+......|..++++-
T Consensus 3 i~IiD--~G~gN~~si~~~l~~lg~~~~i~~~~~~i~~~d~lIlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~pilGiC 80 (195)
T d1ka9h_ 3 ALLID--YGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGIC 80 (195)
T ss_dssp EEEEC--SSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECT
T ss_pred EEEEe--CCCcHHHHHHHHHHHCCCeEEEECCHHHHHHHhhhhcCCCccccchhhhccccCCcccccccccccchhhhhh
Confidence 45665 4568999999999999998766544433322 0 011110 00011111234556666667888888886
Q ss_pred e
Q 040494 79 I 79 (217)
Q Consensus 79 ~ 79 (217)
.
T Consensus 81 l 81 (195)
T d1ka9h_ 81 V 81 (195)
T ss_dssp H
T ss_pred h
Confidence 4
No 26
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=24.81 E-value=75 Score=24.00 Aligned_cols=89 Identities=13% Similarity=0.237 Sum_probs=51.9
Q ss_pred ceEEEEeCCCC-cccHHHHHHH---hHHHCCCcEEEeCCCCC-CccccCCCccceeeEEeCCHHHHHHHhh--hCCCcEE
Q 040494 3 ESYVVVHNIAK-RHNVGTLARS---ATAFGVSEMILVGRRDF-NAFGSHGSTSHVNFRHFHSLSDARVFLK--SKDCDIC 75 (217)
Q Consensus 3 ~~~vvLd~v~~-p~NlG~I~Rs---a~afGv~~v~lv~~~~~-~~~~s~Ga~~~~~i~~~~s~~~~l~~l~--~~g~~v~ 75 (217)
+.++++..+.. ..|..-|=|. |...|+.-+++....+. ++ ..+..+.+.+. ..+|.++
T Consensus 12 D~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~---------------~~~~~~~~~~~~~~~~~~v~ 76 (225)
T d1u0la2 12 DQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE---------------DDLRKVRELEEIYSGLYPIV 76 (225)
T ss_dssp CEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH---------------HHHHHHHHHHHHHTTTSCEE
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCH---------------HHHHHHHHhhcccccceeEE
Confidence 55666666665 4787777665 67889988888754321 11 11222222222 4568888
Q ss_pred EEEecCCcccccccC--CCCCEEEEEcCCCCCCC
Q 040494 76 GVEITDNAVDVTQHP--FKKSTAFLLGNEGMGLS 107 (217)
Q Consensus 76 ~~~~~~~~~~l~~~~--~~~~~alV~GnE~~GLs 107 (217)
.++. .....+.++. +.+++.+++|.=+-|=|
T Consensus 77 ~vSa-~~~~g~~~L~~~l~~kt~~~~G~SGVGKS 109 (225)
T d1u0la2 77 KTSA-KTGMGIEELKEYLKGKISTMAGLSGVGKS 109 (225)
T ss_dssp ECCT-TTCTTHHHHHHHHSSSEEEEECSTTSSHH
T ss_pred Eecc-ccchhHhhHHHHhcCCeEEEECCCCCCHH
Confidence 7764 2333333332 46888888998665544
No 27
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=24.45 E-value=22 Score=23.23 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=25.3
Q ss_pred eEEEEeCCCCcccHHHHHHHhHHHCCCc
Q 040494 4 SYVVVHNIAKRHNVGTLARSATAFGVSE 31 (217)
Q Consensus 4 ~~vvLd~v~~p~NlG~I~Rsa~afGv~~ 31 (217)
+++|..+|.++....-+.+.+..+|+..
T Consensus 3 ~~lV~YDI~d~krr~kv~k~l~~yGl~r 30 (88)
T d2ivya1 3 LYLIFYDITDDNLRNRVAEFLKKKGLDR 30 (88)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCcc
Confidence 5789999999999999999999999743
No 28
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=23.03 E-value=19 Score=26.34 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=40.1
Q ss_pred cccHHHHHHHhHHHCCCcEEEeCCCCC---CccccCCCccc--eeeEEeCCHHHHHHHhhhCCCcEEEEEe
Q 040494 14 RHNVGTLARSATAFGVSEMILVGRRDF---NAFGSHGSTSH--VNFRHFHSLSDARVFLKSKDCDICGVEI 79 (217)
Q Consensus 14 p~NlG~I~Rsa~afGv~~v~lv~~~~~---~~~~s~Ga~~~--~~i~~~~s~~~~l~~l~~~g~~v~~~~~ 79 (217)
++|+-++.|....+|++.+++..+..+ +--.--|..+. +.......+.++++.+.+.|.+++|+-.
T Consensus 15 ~Gn~~s~~~al~~~G~~~~~v~~~~~l~~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGICl 85 (202)
T d1q7ra_ 15 QGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCA 85 (202)
T ss_dssp GGGCHHHHHHHHHTTCEEEEECSGGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETT
T ss_pred CCCHHHHHHHHHHCCCcEEEECCHHHHhcCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeeh
Confidence 599999999999999986666544332 21111111111 1111114556777777788999999853
No 29
>d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=22.01 E-value=19 Score=23.23 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=17.5
Q ss_pred CCHHHHHHHhhhCCCcEEEE
Q 040494 58 HSLSDARVFLKSKDCDICGV 77 (217)
Q Consensus 58 ~s~~~~l~~l~~~g~~v~~~ 77 (217)
-+++.+++.|.+.||.|++.
T Consensus 59 idl~~~~~~L~~aG~~v~g~ 78 (79)
T d2fi0a1 59 TPMDKIVRTLEANGYEVIGL 78 (79)
T ss_dssp CCHHHHHHHHHHTTCEEECC
T ss_pred CCHHHHHHHHHHCCCeeeCC
Confidence 47889999999999999874
No 30
>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}
Probab=21.73 E-value=18 Score=29.48 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=47.2
Q ss_pred HHHCCCcEEEeCCCCCCc--c-ccCCCccceeeEEeCCHHHHHHHhhhCCCcEEEE-EecCCcccccccCC--CCCEEEE
Q 040494 25 TAFGVSEMILVGRRDFNA--F-GSHGSTSHVNFRHFHSLSDARVFLKSKDCDICGV-EITDNAVDVTQHPF--KKSTAFL 98 (217)
Q Consensus 25 ~afGv~~v~lv~~~~~~~--~-~s~Ga~~~~~i~~~~s~~~~l~~l~~~g~~v~~~-~~~~~~~~l~~~~~--~~~~alV 98 (217)
..|+++.|++.++..-.. + ........+++....+++++++.. .|+.+ +.+....|+-+..+ ++-.+..
T Consensus 149 ~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~A-----DIi~t~Tas~s~~Pv~~~~~l~pG~hI~a 223 (340)
T d1x7da_ 149 KHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGV-----DIITTVTADKAYATIITPDMLEPGMHLNA 223 (340)
T ss_dssp HHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTC-----SEEEECCCCSSEEEEECGGGCCTTCEEEE
T ss_pred hhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcC-----CceeeccccCCCCcccchhhcCCCCEEee
Confidence 445666666654321100 0 112234456777778888876432 34433 33334456655444 4556667
Q ss_pred EcCCC---CCCCHHHHhhCCc
Q 040494 99 LGNEG---MGLSAKECEICDF 116 (217)
Q Consensus 99 ~GnE~---~GLs~~~l~~cD~ 116 (217)
+|.-. .-|+++++..++.
T Consensus 224 iGs~~p~~~Eld~~~l~~a~v 244 (340)
T d1x7da_ 224 VGGDCPGKTELHADVLRNARV 244 (340)
T ss_dssp CSCCBTTBEEECHHHHHTSEE
T ss_pred cccchhhhhccCHHHHhcCcE
Confidence 88633 3478899999863
No 31
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}
Probab=21.60 E-value=54 Score=23.38 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=27.8
Q ss_pred CHHHHHHHhhhCCCcEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEcCCC
Q 040494 59 SLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEICDFFVYIPQYG 124 (217)
Q Consensus 59 s~~~~l~~l~~~g~~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~cD~~v~IP~~g 124 (217)
.+-++++.++++|.++++++...++ .+.+.||..+.||...
T Consensus 94 ~~i~~~~~ak~~g~~iI~IT~~~~s-------------------------~La~~ad~~i~i~~~~ 134 (186)
T d1m3sa_ 94 SLIHTAAKAKSLHGIVAALTINPES-------------------------SIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTS-------------------------HHHHHCSEEEECSCCS
T ss_pred hhHHHHHHHHHCCCCEEEEecCCCc-------------------------hhhHhCCEEEEeCCCc
Confidence 3456667777888888888743222 1566889888888754
No 32
>d1zpwx1 d.58.58.1 (X:2-83) Hypothetical protein TTP0101 (TT1823) {Thermus thermophilus [TaxId: 274]}
Probab=20.80 E-value=22 Score=22.93 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=25.2
Q ss_pred ceEEEEeCCCCcccHHHHHHHhHHHCC
Q 040494 3 ESYVVVHNIAKRHNVGTLARSATAFGV 29 (217)
Q Consensus 3 ~~~vvLd~v~~p~NlG~I~Rsa~afGv 29 (217)
++|||..+|.|+.-..-+++.+..+|.
T Consensus 3 ~~ylV~YDI~d~krr~kv~k~l~~yg~ 29 (82)
T d1zpwx1 3 RLYAVAYDIPDDTRRVKLANLLKSYGE 29 (82)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHTTEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHHhCc
Confidence 589999999999999999999999994
No 33
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}
Probab=20.59 E-value=48 Score=22.15 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=24.0
Q ss_pred HHHHHhhhCCCcEEEEEecCCc-------ccccccCCCCCEEEEE
Q 040494 62 DARVFLKSKDCDICGVEITDNA-------VDVTQHPFKKSTAFLL 99 (217)
Q Consensus 62 ~~l~~l~~~g~~v~~~~~~~~~-------~~l~~~~~~~~~alV~ 99 (217)
.++..|++.||+|+.+.+..+. .++.++|-+-.+++|+
T Consensus 19 ~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~ 63 (116)
T d1y81a1 19 IILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFV 63 (116)
T ss_dssp HHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEEC
T ss_pred HHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEE
Confidence 5778889999999988753221 2344555554555544
No 34
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=20.09 E-value=48 Score=23.07 Aligned_cols=65 Identities=9% Similarity=-0.062 Sum_probs=41.9
Q ss_pred CCHHHHHHHhhhCCCcEEEEEecCCcccccccCCCCCEEEEEcCCCCCCCHHHHhh--CCcEEEEcCC
Q 040494 58 HSLSDARVFLKSKDCDICGVEITDNAVDVTQHPFKKSTAFLLGNEGMGLSAKECEI--CDFFVYIPQY 123 (217)
Q Consensus 58 ~s~~~~l~~l~~~g~~v~~~~~~~~~~~l~~~~~~~~~alV~GnE~~GLs~~~l~~--cD~~v~IP~~ 123 (217)
+|--+.+.-.|++||+-+++.......++..+++-.. ++++-+=..=+++++.+. -...|.||..
T Consensus 27 HSALqIl~GAk~EGF~Tv~ic~kgR~~~Y~~f~~~De-~i~~d~f~di~~~~~qe~L~~~N~I~IPhg 93 (123)
T d2r7ka1 27 HTSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADK-FIYVDNFSDIKNEEIQEKLRELNSIVVPHG 93 (123)
T ss_dssp TTHHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSE-EEECSSGGGGGSHHHHHHHHHTTEEECCBH
T ss_pred chHHHHhhhHHHcCCcEEEEecCCCcchhhhccccce-EEEeccHHHHhhHHHHHHHHHCCEEEecCC
Confidence 6778888999999999888886666677888887644 455544322233322221 1246888873
Done!