BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040495
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 181/378 (47%), Gaps = 58/378 (15%)
Query: 65 TGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNML 124
TG+ + LD+ + G S + + L+ +N+++N F+G IPP L L
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 271
Query: 125 EGLVLSNNSFSGTIPTNLSRRSN-LIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
+ L L+ N F+G IP LS + L L + N+ G +P GS LE L + N+ +
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNIS-S 242
G+LP +D+L+++R L++LD++FN FSG +P + N+S S
Sbjct: 332 GELP----------------------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 243 LEVISLSENRFTGSLPVDAGVNLPN-LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
L + LS N F+G + + N N L++L N FTG IP +LSN S L + S N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP 361
SG + L SKL L N +G +P
Sbjct: 430 LSGTIPSSLGSL------------------------------SKLRDLKLWLNMLEGEIP 459
Query: 362 QSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQL 421
Q + + T++ + + N ++G IP G+ + NLNW+++ +N TG IP IG L+NL +
Sbjct: 460 QELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 422 LDLGGNFLQGSIPSSLGN 439
L L N G+IP+ LG+
Sbjct: 519 LKLSNNSFSGNIPAELGD 536
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 188/393 (47%), Gaps = 48/393 (12%)
Query: 72 RHQRVTRLDLRNQSIGGPLSPYVGNLSF-LRYINLANNGFLGEIPPQIGR--LNMLEGLV 128
+ + + LDL G L + NLS L ++L++N F G I P + + N L+ L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 129 LSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA 188
L NN F+G IP LS S L+ L + NYL G IPS++GSL KL L ++ N + G++P
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISL 248
L+ ++ L L + FN +G IP + N ++L ISL
Sbjct: 461 E-----------------------LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 249 SENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF------ 302
S NR TG +P G L NL L + N+F+G+IP L + L ++ + N F
Sbjct: 498 SNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 303 -----SGRVSVDFSRLKNLSFL-NMGINNLGTRTANELDFINLLANCSKLERLYFNRN-- 354
SG+++ +F K ++ N G+ N L+F + + +L RL RN
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS--EQLNRLS-TRNPC 613
Query: 355 ----RFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410
R G + + ++ + M N +SG IP I S L L + N +G+IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+G+L+ L +LDL N L G IP ++ LT+L
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 170/362 (46%), Gaps = 19/362 (5%)
Query: 79 LDLRNQSIGGPLSPYVGN--LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
LDL + + GP+ P + + L+ + L NNGF G+IPP + + L L LS N SG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
TIP++L S L +L + N L GEIP + + LE L + N +TG++P+ + N ++L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 197 LAFDVRENILWGRIDSLV-QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255
+ N L G I + +L NL +L ++ N FSG IP + + SL + L+ N F G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 256 SLPVDAGVNLPNLRQLSPNGNNF-TGSIPVSLSNASRLEMIEFSRN--QFSGRVSVDFSR 312
++P +Q NF G V + N + + N +F G S +R
Sbjct: 553 TIPAAM------FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK 372
L + N+ G T+ D N + L + N G +P+ + + +
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFD------NNGSMMFLDMSYNMLSGYIPKEIGSM-PYLF 659
Query: 373 QIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGS 432
+ +G N ISG+IP + LN L + SN G IP + L L +DL N L G
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719
Query: 433 IP 434
IP
Sbjct: 720 IP 721
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 125/270 (46%), Gaps = 44/270 (16%)
Query: 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQL---RNLRLLDIAFN--HFS 230
F+ ++HI G + + +SL + D+ N L G + +L L L+ L+++ N F
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 231 GMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSN-A 289
G + + ++SLEV+ LS N +G+ N G + LS+
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGA--------------------NVVGWV---LSDGC 177
Query: 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERL 349
L+ + S N+ SG VD SR NL FL++ NN T I L +CS L+ L
Sbjct: 178 GELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTG-------IPFLGDCSALQHL 228
Query: 350 YFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTI 409
+ N+ G ++++ + +K + + N+ G IPP +L +L++ N FTG I
Sbjct: 229 DISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI 285
Query: 410 PPVI-GELKNLQLLDLGGNFLQGSIPSSLG 438
P + G L LDL GN G++P G
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 289 ASRLEMIEFSRNQFSGRVSV--DFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKL 346
++ L ++ SRN SG V+ L FLN+ ++N LDF ++ KL
Sbjct: 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV--------SSNTLDFPGKVSGGLKL 150
Query: 347 ---ERLYFNRNRFQG--VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMD 401
E L + N G V+ +++ +K +A+ N+ISG + + NL +L +
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVS 208
Query: 402 SNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
SN F+ IP +G+ LQ LD+ GN L G ++ T L
Sbjct: 209 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 181/378 (47%), Gaps = 58/378 (15%)
Query: 65 TGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNML 124
TG+ + LD+ + G S + + L+ +N+++N F+G IPP L L
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 268
Query: 125 EGLVLSNNSFSGTIPTNLSRRSN-LIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
+ L L+ N F+G IP LS + L L + N+ G +P GS LE L + N+ +
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNIS-S 242
G+LP +D+L+++R L++LD++FN FSG +P + N+S S
Sbjct: 329 GELP----------------------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 243 LEVISLSENRFTGSLPVDAGVNLPN-LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
L + LS N F+G + + N N L++L N FTG IP +LSN S L + S N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP 361
SG + L SKL L N +G +P
Sbjct: 427 LSGTIPSSLGSL------------------------------SKLRDLKLWLNMLEGEIP 456
Query: 362 QSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQL 421
Q + + T++ + + N ++G IP G+ + NLNW+++ +N TG IP IG L+NL +
Sbjct: 457 QELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 422 LDLGGNFLQGSIPSSLGN 439
L L N G+IP+ LG+
Sbjct: 516 LKLSNNSFSGNIPAELGD 533
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 185/386 (47%), Gaps = 48/386 (12%)
Query: 79 LDLRNQSIGGPLSPYVGNLSF-LRYINLANNGFLGEIPPQIGR--LNMLEGLVLSNNSFS 135
LDL G L + NLS L ++L++N F G I P + + N L+ L L NN F+
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSS 195
G IP LS S L+ L + NYL G IPS++GSL KL L ++ N + G++P
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-------- 456
Query: 196 LLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255
L+ ++ L L + FN +G IP + N ++L ISLS NR TG
Sbjct: 457 ---------------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF-----------SG 304
+P G L NL L + N+F+G+IP L + L ++ + N F SG
Sbjct: 502 EIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 305 RVSVDFSRLKNLSFL-NMGINNLGTRTANELDFINLLANCSKLERLYFNRN------RFQ 357
+++ +F K ++ N G+ N L+F + + +L RL RN R
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS--EQLNRLS-TRNPCNITSRVY 617
Query: 358 GVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELK 417
G + + ++ + M N +SG IP I S L L + N +G+IP +G+L+
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 418 NLQLLDLGGNFLQGSIPSSLGNLTLL 443
L +LDL N L G IP ++ LT+L
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTML 703
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 170/362 (46%), Gaps = 19/362 (5%)
Query: 79 LDLRNQSIGGPLSPYVGN--LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
LDL + + GP+ P + + L+ + L NNGF G+IPP + + L L LS N SG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
TIP++L S L +L + N L GEIP + + LE L + N +TG++P+ + N ++L
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 197 LAFDVRENILWGRIDSLV-QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255
+ N L G I + +L NL +L ++ N FSG IP + + SL + L+ N F G
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 256 SLPVDAGVNLPNLRQLSPNGNNF-TGSIPVSLSNASRLEMIEFSRN--QFSGRVSVDFSR 312
++P +Q NF G V + N + + N +F G S +R
Sbjct: 550 TIPAAM------FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK 372
L + N+ G T+ D N + L + N G +P+ + + +
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFD------NNGSMMFLDMSYNMLSGYIPKEIGSM-PYLF 656
Query: 373 QIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGS 432
+ +G N ISG+IP + LN L + SN G IP + L L +DL N L G
Sbjct: 657 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 716
Query: 433 IP 434
IP
Sbjct: 717 IP 718
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 125/270 (46%), Gaps = 44/270 (16%)
Query: 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQL---RNLRLLDIAFN--HFS 230
F+ ++HI G + + +SL + D+ N L G + +L L L+ L+++ N F
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 231 GMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNA- 289
G + + ++SLEV+ LS N +G+ N G + LS+
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGA--------------------NVVGWV---LSDGC 174
Query: 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERL 349
L+ + S N+ SG VD SR NL FL++ NN T I L +CS L+ L
Sbjct: 175 GELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTG-------IPFLGDCSALQHL 225
Query: 350 YFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTI 409
+ N+ G ++++ + +K + + N+ G IPP +L +L++ N FTG I
Sbjct: 226 DISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI 282
Query: 410 PPVI-GELKNLQLLDLGGNFLQGSIPSSLG 438
P + G L LDL GN G++P G
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 289 ASRLEMIEFSRNQFSGRVSV--DFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKL 346
++ L ++ SRN SG V+ L FLN+ ++N LDF ++ KL
Sbjct: 96 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV--------SSNTLDFPGKVSGGLKL 147
Query: 347 ---ERLYFNRNRFQG--VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMD 401
E L + N G V+ +++ +K +A+ N+ISG + + NL +L +
Sbjct: 148 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVS 205
Query: 402 SNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
SN F+ IP +G+ LQ LD+ GN L G ++ T L
Sbjct: 206 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTEL 246
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 130/286 (45%), Gaps = 15/286 (5%)
Query: 31 NETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQ--WTGVTCGRRHQ--RVTRLDLR--NQ 84
N D+ ALL IK L +P + SSW + C W GV C Q RV LDL N
Sbjct: 4 NPQDKQALLQIKKDLGNPTTL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 85 SIGGPLSPYVGNLSFLRYINLAN-NGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLS 143
P+ + NL +L ++ + N +G IPP I +L L L +++ + SG IP LS
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 144 RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLL-AFDVR 202
+ L+ L N L G +P +I SL L + N I+G +P S G+ S L + +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 203 ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG 262
N L G+I NL +D++ N G + + + I L++N SL D G
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN----SLAFDLG 238
Query: 263 -VNL-PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306
V L NL L N G++P L+ L + S N G +
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 263 VNLPNLRQLSPNG-NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNM 321
NLP L L G NN G IP +++ ++L + + SG + S++K L L+
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 322 GINNL-GTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR 380
N L GT + NL+ + F+ NR G +P S +FS + + RNR
Sbjct: 133 SYNALSGTLPPSISSLPNLVG-------ITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 381 ISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFL 429
++G IPP ++ NL ++ + N+ G + G KN Q + L N L
Sbjct: 186 LTGKIPPTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 340 LANCSKLERLYFNR-NRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWL 398
LAN L LY N G +P ++A + + + + +SG IP + L L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVTL 130
Query: 399 TMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
N +GT+PP I L NL + GN + G+IP S G+ + L
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNL 419
+P S+AN G N + G IPP I L++L + +G IP + ++K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 420 QLLDLGGNFLQGSIPSSLGNL 440
LD N L G++P S+ +L
Sbjct: 128 VTLDFSYNALSGTLPPSISSL 148
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTI 138
+DL + G S G+ + I+LA N ++ ++G L GL L NN GT+
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260
Query: 139 PTNLSRRSNLIELSVDTNYLVGEIPSA 165
P L++ L L+V N L GEIP
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG 287
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 142/308 (46%), Gaps = 58/308 (18%)
Query: 105 LANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP----TNLSRRSNLIELSVDTNYLVG 160
L NN + +I P + L L GL L NN + P TNL+R +ELS +T +
Sbjct: 91 LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNR----LELSSNT---IS 142
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLR 220
+I SA+ L L++L N +T P + NL++L D+ N + I L +L NL
Sbjct: 143 DI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV-SDISVLAKLTNLE 198
Query: 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGV--NLPNLRQLSPNGNNF 278
L N S + P I +++L+ +SL+ N+ D G +L NL L N
Sbjct: 199 SLIATNNQISDITPLGI--LTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQI 251
Query: 279 TGSIPVS--------------------LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSF 318
+ P+S L+ + L +E + NQ + S LKNL++
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI--SNLKNLTY 309
Query: 319 LNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGR 378
L + NN+ I+ +++ +KL+RL+F+ N+ V S+AN ++ I ++ G
Sbjct: 310 LTLYFNNISD--------ISPVSSLTKLQRLFFSNNKVSDV--SSLANLTN-INWLSAGH 358
Query: 379 NRISGTIP 386
N+IS P
Sbjct: 359 NQISDLTP 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 140/306 (45%), Gaps = 54/306 (17%)
Query: 105 LANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP----TNLSRRSNLIELSVDTNYLVG 160
L NN + +I P + L L GL L NN + P TNL+R +ELS +T +
Sbjct: 91 LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNR----LELSSNT---IS 142
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLR 220
+I SA+ L L++L N +T P + NL++L D+ N + I L +L NL
Sbjct: 143 DI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV-SDISVLAKLTNLE 198
Query: 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG 280
L N S + P I +++L+ +SL+ N+ + +L NL L N +
Sbjct: 199 SLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 253
Query: 281 SIPVS--------------------LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLN 320
P+S L+ + L +E + NQ + S LKNL++L
Sbjct: 254 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI--SNLKNLTYLT 311
Query: 321 MGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR 380
+ NN+ I+ +++ +KL+RL+F N+ V S+AN ++ I ++ G N+
Sbjct: 312 LYFNNISD--------ISPVSSLTKLQRLFFYNNKVSDV--SSLANLTN-INWLSAGHNQ 360
Query: 381 ISGTIP 386
IS P
Sbjct: 361 ISDLTP 366
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 55/287 (19%)
Query: 37 ALLAIKLQLHD--PLGVTSSWNN-SMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPY 93
+L+A Q+ D PLG+ ++ + S++ Q + +T LDL N I L+P
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAPL 257
Query: 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153
G L+ L + L N + I P G L L L L+ N ++S SNL L+
Sbjct: 258 SG-LTKLTELKLGANQ-ISNISPLAG-LTALTNLELNENQLE-----DISPISNLKNLTY 309
Query: 154 DTNYL--VGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRID 211
T Y + +I S + SL KL+RLF ++N ++ +
Sbjct: 310 LTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSD-------------------------VS 343
Query: 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVD--AGVNLPNLR 269
SL L N+ L N S + P+ N++ + + L++ +T + PV+ A V++PN
Sbjct: 344 SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNA-PVNYKANVSIPNTV 400
Query: 270 QLSPNGNNFTGSI--PVSLSNASRLEMIEFSRN--QFSGRVSVDFSR 312
+ N TG++ P ++S+ + + N ++ VS FS+
Sbjct: 401 K------NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 441
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 140/306 (45%), Gaps = 54/306 (17%)
Query: 105 LANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP----TNLSRRSNLIELSVDTNYLVG 160
L NN + +I P + L L GL L NN + P TNL+R +ELS +T +
Sbjct: 91 LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNR----LELSSNT---IS 142
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLR 220
+I SA+ L L++L N +T P + NL++L D+ N + I L +L NL
Sbjct: 143 DI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV-SDISVLAKLTNLE 198
Query: 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG 280
L N S + P I +++L+ +SL+ N+ + +L NL L N +
Sbjct: 199 SLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 253
Query: 281 SIPVS--------------------LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLN 320
P+S L+ + L +E + NQ + S LKNL++L
Sbjct: 254 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI--SNLKNLTYLT 311
Query: 321 MGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR 380
+ NN+ I+ +++ +KL+RL+F N+ V S+AN ++ I ++ G N+
Sbjct: 312 LYFNNISD--------ISPVSSLTKLQRLFFYNNKVSDV--SSLANLTN-INWLSAGHNQ 360
Query: 381 ISGTIP 386
IS P
Sbjct: 361 ISDLTP 366
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 55/287 (19%)
Query: 37 ALLAIKLQLHD--PLGVTSSWNN-SMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPY 93
+L+A Q+ D PLG+ ++ + S++ Q + +T LDL N I L+P
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAPL 257
Query: 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153
G L+ L + L N + I P G L L L L+ N ++S SNL L+
Sbjct: 258 SG-LTKLTELKLGANQ-ISNISPLAG-LTALTNLELNENQLE-----DISPISNLKNLTY 309
Query: 154 DTNYL--VGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRID 211
T Y + +I S + SL KL+RLF ++N ++ +
Sbjct: 310 LTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSD-------------------------VS 343
Query: 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVD--AGVNLPNLR 269
SL L N+ L N S + P+ N++ + + L++ +T + PV+ A V++PN
Sbjct: 344 SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNA-PVNYKANVSIPNTV 400
Query: 270 QLSPNGNNFTGSI--PVSLSNASRLEMIEFSRN--QFSGRVSVDFSR 312
+ N TG++ P ++S+ + + N ++ VS FS+
Sbjct: 401 K------NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 441
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 332 NELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRS 391
N+L I L N +KL + N N+ + P +AN ++ + + + N+I+ P +++
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTN-LTGLTLFNNQITDIDP--LKN 127
Query: 392 HANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
NLN L + SN + I + G L +LQ L+ N + P L NLT L
Sbjct: 128 LTNLNRLELSSNTISD-ISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTL 175
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 142/306 (46%), Gaps = 55/306 (17%)
Query: 105 LANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP----TNLSRRSNLIELSVDTNYLVG 160
L NN + +I P + L L GL L NN + P TNL+R +ELS +T +
Sbjct: 91 LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNR----LELSSNT---IS 142
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLR 220
+I SA+ L L++L F N +T P + NL++L D+ N + I L +L NL
Sbjct: 143 DI-SALSGLTSLQQLN-FGNQVTDLKP--LANLTTLERLDISSNKV-SDISVLAKLTNLE 197
Query: 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG 280
L N S + P I +++L+ +SL+ N+ + +L NL L N +
Sbjct: 198 SLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 252
Query: 281 SIPVS--------------------LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLN 320
P+S L+ + L +E + NQ + S LKNL++L
Sbjct: 253 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI--SNLKNLTYLT 310
Query: 321 MGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR 380
+ NN+ I+ +++ +KL+RL+F+ N+ V S+AN ++ I ++ G N+
Sbjct: 311 LYFNNISD--------ISPVSSLTKLQRLFFSNNKVSDV--SSLANLTN-INWLSAGHNQ 359
Query: 381 ISGTIP 386
IS P
Sbjct: 360 ISDLTP 365
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 142/308 (46%), Gaps = 59/308 (19%)
Query: 105 LANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP----TNLSRRSNLIELSVDTNYLVG 160
L NN + +I P + L L GL L NN + P TNL+R +ELS +T +
Sbjct: 95 LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNR----LELSSNT---IS 146
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLR 220
+I SA+ L L++L F N +T P + NL++L D+ N + I L +L NL
Sbjct: 147 DI-SALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSNKV-SDISVLAKLTNLE 201
Query: 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG--VNLPNLRQLSPNGNNF 278
L N S + P I +++L+ +SL+ N+ D G +L NL L N
Sbjct: 202 SLIATNNQISDITPLGI--LTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQI 254
Query: 279 TGSIPVS--------------------LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSF 318
+ P+S L+ + L +E + NQ + S LKNL++
Sbjct: 255 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI--SNLKNLTY 312
Query: 319 LNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGR 378
L + NN+ I+ +++ +KL+RL+F N+ V S+AN ++ I ++ G
Sbjct: 313 LTLYFNNISD--------ISPVSSLTKLQRLFFANNKVSDV--SSLANLTN-INWLSAGH 361
Query: 379 NRISGTIP 386
N+IS P
Sbjct: 362 NQISDLTP 369
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 142/308 (46%), Gaps = 59/308 (19%)
Query: 105 LANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP----TNLSRRSNLIELSVDTNYLVG 160
L NN + +I P + L L GL L NN + P TNL+R +ELS +T +
Sbjct: 96 LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNR----LELSSNT---IS 147
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLR 220
+I SA+ L L++L F N +T P + NL++L D+ N + I L +L NL
Sbjct: 148 DI-SALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSNKV-SDISVLAKLTNLE 202
Query: 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG--VNLPNLRQLSPNGNNF 278
L N S + P I +++L+ +SL+ N+ D G +L NL L N
Sbjct: 203 SLIATNNQISDITPLGI--LTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQI 255
Query: 279 TGSIPVS--------------------LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSF 318
+ P+S L+ + L +E + NQ + S LKNL++
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI--SNLKNLTY 313
Query: 319 LNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGR 378
L + NN+ I+ +++ +KL+RL+F N+ V S+AN ++ I ++ G
Sbjct: 314 LTLYFNNISD--------ISPVSSLTKLQRLFFYNNKVSDV--SSLANLTN-INWLSAGH 362
Query: 379 NRISGTIP 386
N+IS P
Sbjct: 363 NQISDLTP 370
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 55/287 (19%)
Query: 37 ALLAIKLQLHD--PLGVTSSWNN-SMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPY 93
+L+A Q+ D PLG+ ++ + S++ Q + +T LDL N I L+P
Sbjct: 203 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAPL 261
Query: 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153
G L+ L + L N + I P G L L L L+ N ++S SNL L+
Sbjct: 262 SG-LTKLTELKLGANQ-ISNISPLAG-LTALTNLELNENQLE-----DISPISNLKNLTY 313
Query: 154 DTNYL--VGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRID 211
T Y + +I S + SL KL+RLF ++N ++ +
Sbjct: 314 LTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSD-------------------------VS 347
Query: 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVD--AGVNLPNLR 269
SL L N+ L N S + P+ N++ + + L++ +T + PV+ A V++PN
Sbjct: 348 SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNA-PVNYKANVSIPNTV 404
Query: 270 QLSPNGNNFTGSI--PVSLSNASRLEMIEFSRN--QFSGRVSVDFSR 312
+ N TG++ P ++S+ + + N ++ VS FS+
Sbjct: 405 K------NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 141/306 (46%), Gaps = 55/306 (17%)
Query: 105 LANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP----TNLSRRSNLIELSVDTNYLVG 160
L NN + +I P + L L GL L NN + P TNL+R +ELS +T +
Sbjct: 91 LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNR----LELSSNT---IS 142
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLR 220
+I SA+ L L++L F N +T P + NL++L D+ N + I L +L NL
Sbjct: 143 DI-SALSGLTSLQQLN-FGNQVTDLKP--LANLTTLERLDISSNKV-SDISVLAKLTNLE 197
Query: 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG 280
L N S + P I +++L+ +SL+ N+ + +L NL L N +
Sbjct: 198 SLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 252
Query: 281 SIPVS--------------------LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLN 320
P+S L+ + L +E + NQ + S LKNL++L
Sbjct: 253 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI--SNLKNLTYLT 310
Query: 321 MGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR 380
+ NN+ I+ +++ +KL+RL+F N+ V S+AN ++ I ++ G N+
Sbjct: 311 LYFNNISD--------ISPVSSLTKLQRLFFYNNKVSDV--SSLANLTN-INWLSAGHNQ 359
Query: 381 ISGTIP 386
IS P
Sbjct: 360 ISDLTP 365
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 55/287 (19%)
Query: 37 ALLAIKLQLHD--PLGVTSSWNN-SMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPY 93
+L+A Q+ D PLG+ ++ + S++ Q + +T LDL N I L+P
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAPL 256
Query: 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153
G L+ L + L N + I P G L L L L+ N ++S SNL L+
Sbjct: 257 SG-LTKLTELKLGANQ-ISNISPLAG-LTALTNLELNENQLE-----DISPISNLKNLTY 308
Query: 154 DTNYL--VGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRID 211
T Y + +I S + SL KL+RLF ++N ++ +
Sbjct: 309 LTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSD-------------------------VS 342
Query: 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVD--AGVNLPNLR 269
SL L N+ L N S + P+ N++ + + L++ +T + PV+ A V++PN
Sbjct: 343 SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNA-PVNYKANVSIPNTV 399
Query: 270 QLSPNGNNFTGSI--PVSLSNASRLEMIEFSRN--QFSGRVSVDFSR 312
+ N TG++ P ++S+ + + N ++ VS FS+
Sbjct: 400 K------NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 440
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 128/286 (44%), Gaps = 27/286 (9%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
V L+L+ S + L+ ++L G +P + LN+L+ LVLS N F
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD 311
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFK---LERLFIFHNHITGQLPAS--I 190
+ + +L L + N V ++ +G L K L+ L + HN I S +
Sbjct: 312 QLCQISAANFPSLTHLYIRGN--VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQL 369
Query: 191 GNLSSLLAFDVRENILWG-RIDSLVQLRNLRLLDIAFNHFSGMIPP-PIFNISSLEVISL 248
NLS L ++ N G + + + L LLD+AF P P N+ L+V++L
Sbjct: 370 KNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Query: 249 SENRF-TGSLPVDAGVNLPNLRQLSPNGNNFT-GSIPVS--LSNASRLEMIEFSRNQFSG 304
+ T + + AG LP LR L+ GN+F G+I + L LE++ S G
Sbjct: 430 TYCFLDTSNQHLLAG--LPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSS---CG 484
Query: 305 RVSVD---FSRLKNLSFLNMGINNLGTRTANELD-----FINLLAN 342
+S+D F L +S +++ N+L + + L ++NL AN
Sbjct: 485 LLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAAN 530
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 20/253 (7%)
Query: 109 GFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPS-AIG 167
L +P I +N L+ LVL+ NSF N + +L +L + N ++ + +
Sbjct: 287 AHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLE 346
Query: 168 SLFKLERLFIFHNHITGQLPA--SIGNLSSLLAFDVRENILWGRID-SLVQLRNLRLLDI 224
L L++L + H+ I + NL L ++ N G D + + L LLD+
Sbjct: 347 KLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDV 406
Query: 225 AFNHFSGMIP-PPIFNISSLEVISLSENRF-TGSLPVDAGVNLPNLRQLSPNGNNFT-GS 281
AF H P P N+ L V++LS T + + AG L +LR L+ GN+F GS
Sbjct: 407 AFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAG--LQDLRHLNLQGNSFQDGS 464
Query: 282 IPVS--LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINL 339
I + L LE++ S F L+N++ L++ N+L T + +D +
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL---TGDSMDAL-- 519
Query: 340 LANCSKLERLYFN 352
S L+ LY N
Sbjct: 520 ----SHLKGLYLN 528
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 116/269 (43%), Gaps = 36/269 (13%)
Query: 111 LGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPS-AIGSL 169
L E+P + L+ L+ LVLS N F + S +L LS+ N E+ + + +L
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 170 FKLERLFIFHNHITGQLPASIG--NLSSLLAFDVRENI-LWGRIDSLVQLRNLRLLDIAF 226
L L + H+ I ++ NLS L + ++ N L + ++ + L LLD+AF
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 227 NHFS-GMIPPPIFNISSLEVISL--------SENRFTGSLPVDAGVNLPNLRQLSPNGNN 277
P N+ L+V++L SE F G LP L+ L+ GN+
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG---------LPALQHLNLQGNH 460
Query: 278 F-TGSIPV--SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334
F G+I SL RLE++ S S F+ LK ++ +++ N L + + L
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520
Query: 335 DFINLLANCSKLERLYFN--RNRFQGVLP 361
S L+ +Y N N +LP
Sbjct: 521 ---------SHLKGIYLNLASNHISIILP 540
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG------INNLGTRTANEL 334
IP +L N++ E +EFS N + FSRL NL+FL++ I+ ++ + L
Sbjct: 26 EIPGTLPNST--ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83
Query: 335 DFINLLAN------------CSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRIS 382
D + L AN L+ L+F + + + N T++ + +G N IS
Sbjct: 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKTLESLYLGSNHIS 142
Query: 383 G-TIPPG 388
+P G
Sbjct: 143 SIKLPKG 149
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 213 LVQLRNLRLLDIAFNH----FSGMIPPPIFN-ISSLEVISLSENRFTGSLPVDAGVNLPN 267
+ LRNL LDI+ H F+G IFN +SSLEV+ ++ N F + D L N
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327
L L + P + ++ S L+++ S N F + + L +L L+ +N++
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 328 TRTANELD-------FINLLAN 342
T EL F+NL N
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQN 258
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 16/180 (8%)
Query: 213 LVQLRNLRLLDIAFNH----FSGMIPPPIFN-ISSLEVISLSENRFTGSLPVDAGVNLPN 267
+ LRNL LDI+ H F+G IFN +SSLEV+ ++ N F + D L N
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327
L L + P + ++ S L+++ S N F + + L +L L+ +N++
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLP-QSMANFSSTIKQIAMGRNRISGTIP 386
T EL S L L +N F QS + +Q+ + R+ P
Sbjct: 556 TSKKQELQHFP-----SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 610
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 47/244 (19%)
Query: 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQL 271
SLV + R+ D ++N F LE++ N G P + L +L++L
Sbjct: 312 SLVSVTIERVKDFSYN----------FGWQHLELV----NCKFGQFPT---LKLKSLKRL 354
Query: 272 SPNGNNFTGSIPVSLSNASRLEMIEFSRN--QFSGRVS-VDFSRLKNLSFLNMGINNLGT 328
+ N G S + LE ++ SRN F G S DF + +L +L++ N + T
Sbjct: 355 TFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLDLSFNGVIT 411
Query: 329 RTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK-------QIAMGRNRI 381
++N F+ L +LE L F + + M+ FS + I+ R+
Sbjct: 412 MSSN---FLGL----EQLEHLDFQHSNLK-----QMSEFSVFLSLRNLIYLDISHTHTRV 459
Query: 382 S-GTIPPGIRSHANLNWLTMDSNLFTGT-IPPVIGELKNLQLLDLGGNFLQGSIPSSLGN 439
+ I G+ S L L M N F +P + EL+NL LDL L+ P++ +
Sbjct: 460 AFNGIFNGLSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 440 LTLL 443
L+ L
Sbjct: 517 LSSL 520
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 213 LVQLRNLRLLDIAFNH----FSGMIPPPIFN-ISSLEVISLSENRFTGSLPVDAGVNLPN 267
+ LRNL LDI+ H F+G IFN +SSLEV+ ++ N F + D L N
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327
L L + P + ++ S L+++ S N F + + L +L L+ +N++
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 328 TRTANELD-------FINLLAN 342
T EL F+NL N
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQN 553
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 45/243 (18%)
Query: 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQL 271
SLV + R+ D ++N F LE+++ +F G P + L +L++L
Sbjct: 288 SLVSVTIERVKDFSYN----------FGWQHLELVNC---KF-GQFPT---LKLKSLKRL 330
Query: 272 SPNGNNFTGSIPVSLSNASRLEMIEFSRN--QFSGRVSVDFSRLKNLSFLNMGINNLGTR 329
+ N G S + LE ++ SRN F G S +L +L++ N + T
Sbjct: 331 TFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388
Query: 330 TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK-------QIAMGRNRIS 382
++N F+ L +LE L F + + M+ FS + I+ R++
Sbjct: 389 SSN---FLGL----EQLEHLDFQHSNLK-----QMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 383 -GTIPPGIRSHANLNWLTMDSNLFTGT-IPPVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440
I G+ S L L M N F +P + EL+NL LDL L+ P++ +L
Sbjct: 437 FNGIFNGLSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 441 TLL 443
+ L
Sbjct: 494 SSL 496
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 87/412 (21%), Positives = 163/412 (39%), Gaps = 64/412 (15%)
Query: 71 RRHQRVTRLDL-RNQSIGGPLSPYVGNLSFLRYINLANNGFL----GEIPPQIGRLNMLE 125
R + +TRLDL +NQ L P G L+ L+ I+ ++N E+ P G+ L
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK--TLS 177
Query: 126 GLVLSNNSFSGTIPTNLSR-----RSNLIE-LSVDTNYLVGEIPSAIGSLFKLERLF--I 177
L+ NS + + + R+ ++E L V N +I + + F I
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 178 FHNHITGQLPASIG---------------NLSSLLAFDVRENILWGRIDSLVQ-LRNLRL 221
+HI G A G SS+ D+ ++ + + L++L++
Sbjct: 238 LAHHIMG---AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294
Query: 222 LDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGS 281
L++A+N + + + + +L+V++LS N G L LP + + N+
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 282 IPVSLSNASRLEMIEFSRNQFSG--------RVSVDFSRLKNLSFLNMGIN--NLGTRTA 331
+ +L+ ++ N + + + ++L L +N+ N +L
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 332 NELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRS 391
LD + L L+ L N+NRF + + +++Q+ +G N + +
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ------LAW 467
Query: 392 HANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
L W ++F G L +LQ+L L N+L P +LT L
Sbjct: 468 ETELCW-----DVFEG--------LSHLQVLYLNHNYLNSLPPGVFSHLTAL 506
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 114 IPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLE 173
I I + + L L L+ NS + +P + SNL L + N L +P+ +GS F+L+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENIL 206
+ F N +T LP GNL +L V N L
Sbjct: 297 YFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPL 328
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 334 LDFINLLANCSK---LERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIR 390
L N+ AN K L RLY N N LP + N S+ ++ + + NR++ ++P +
Sbjct: 234 LQIFNISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSN-LRVLDLSHNRLT-SLPAELG 290
Query: 391 SHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQ 430
S L + N+ T T+P G L NLQ L + GN L+
Sbjct: 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 203 ENILWGRIDSLVQLRNLRLLDIAFNHFS--------------GMIPPPIFNISSLEVISL 248
++ LW +D L NL++ +I+ N F +P I N+S+L V+ L
Sbjct: 222 DDQLWHALD----LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL 277
Query: 249 SENRFTGSLPVDAG 262
S NR T SLP + G
Sbjct: 278 SHNRLT-SLPAELG 290
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 209 RIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNL 268
+++S LR+L +L ++ NH + +++L + L +NR T ++P A V L L
Sbjct: 80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKL 138
Query: 269 RQLSPNGNNFTGSIPVSLSNA----SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324
++L NN SIP N RL++ E R + + F L NL +LN+ +
Sbjct: 139 KELWLR-NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA--FEGLSNLRYLNLAMC 195
Query: 325 NL 326
NL
Sbjct: 196 NL 197
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 285 SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344
S + LE+++ SRN F+ L NL+ L + N L T ++ S
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL------S 136
Query: 345 KLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGR-NRISGTIPPGIRSHANLNWLTMD-S 402
KL+ L+ N + + P N +++++ +G R+S +NL +L +
Sbjct: 137 KLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195
Query: 403 NLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
NL P + L L LDL GN L P S L L
Sbjct: 196 NLRE---IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 100 LRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLV 159
+RY+ L N L +I + L L L+L+ N + +NL EL + N L
Sbjct: 65 VRYLALGGNK-LHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 160 GEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW----GRIDSLVQ 215
L L L + HN + L++L D+ N L G D L Q
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 216 LRNLRLLDIAFNHFSGMIPPPIFN-ISSLEVISLSENRFTGSLP 258
L++LRL + + +P +F+ ++SL+ I L +N + + P
Sbjct: 183 LKDLRL----YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 285 SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344
L+N L ++E NQ F +L NL++LN+ N L + D L N +
Sbjct: 107 KLTNLKELVLVE---NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD---KLTNLT 160
Query: 345 KLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSN 403
+L+ Y N+ Q LP+ + + + +K + + +N++ ++P G+ +L ++ + N
Sbjct: 161 ELDLSY---NQLQS-LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215
Query: 404 LFTGTIP 410
+ T P
Sbjct: 216 PWDCTCP 222
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 213 LVQLRNLRLLDIAFNH----FSGMIPPPIFN-ISSLEVISLSENRFTGSLPVDAGVNLPN 267
+ LRNL LDI+ H F+G IFN +SSLEV+ ++ N F + D L N
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
L L + P + ++ S L+++ + NQ F RL +L
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 45/243 (18%)
Query: 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQL 271
SLV + R+ D ++N F LE++ N G P + L +L++L
Sbjct: 288 SLVSVTIERVKDFSYN----------FGWQHLELV----NCKFGQFPT---LKLKSLKRL 330
Query: 272 SPNGNNFTGSIPVSLSNASRLEMIEFSRN--QFSGRVSVDFSRLKNLSFLNMGINNLGTR 329
+ N G S + LE ++ SRN F G S +L +L++ N + T
Sbjct: 331 TFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388
Query: 330 TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK-------QIAMGRNRIS 382
++N F+ L +LE L F + + M+ FS + I+ R++
Sbjct: 389 SSN---FLGL----EQLEHLDFQHSNLK-----QMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 383 -GTIPPGIRSHANLNWLTMDSNLFTGT-IPPVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440
I G+ S L L M N F +P + EL+NL LDL L+ P++ +L
Sbjct: 437 FNGIFNGLSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 441 TLL 443
+ L
Sbjct: 494 SSL 496
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 147 NLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL 206
+L EL ++ N + P A +LF L L + N + LS+L D+ EN +
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 207 WGRIDSLVQ-LRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNL 265
+D + Q L NL+ L++ N + ++SLE ++L + T S+P +A +L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175
Query: 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299
L L N S RL+++E S
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 97 LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156
LS L++ + G L E+P + LE L L+ N +P +++ + L ELS+
Sbjct: 103 LSHLQHXTIDAAG-LXELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRAC 160
Query: 157 YLVGEIPSAIGS---------LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207
+ E+P + S L L+ L + I LPASI NL +L + +R + L
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS 219
Query: 208 GRIDSLVQLRNLRLLDI----AFNHFSGMIPPPIF 238
++ L L LD+ A ++ PPIF
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNY-----PPIF 249
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 12/137 (8%)
Query: 44 QLHDPLGVTSSWNNSMSLC-------QWTGVTCGRRH----QRVTRLDLRNQSIGGPLSP 92
+L +PL T + L +WTG+ Q + L +RN + L P
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGP 223
Query: 93 YVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELS 152
+ +L L ++L L PP G L+ L+L + S T+P ++ R + L +L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 153 VDTNYLVGEIPSAIGSL 169
+ + +PS I L
Sbjct: 284 LRGCVNLSRLPSLIAQL 300
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 138 IPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLL 197
+P +LS+++ + L++ NY+ S I SL KL L I HN I L S+ + L
Sbjct: 15 VPKDLSQKTTI--LNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQEL 71
Query: 198 AF-DVRENILWGRIDSLVQLRNLRLLDIAFNHFSGM-IPPPIFNISSLEVISLSENRFTG 255
+ D+ N L +I S NL+ LD++FN F + I N+S L+ + LS
Sbjct: 72 EYLDLSHNKL-VKI-SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129
Query: 256 S--LPV 259
S LP+
Sbjct: 130 SSVLPI 135
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 216 LRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275
L L L++ +N + +++ L + L+ N+ SLP+ +L L +L G
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 276 NNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334
N S+P + ++L+ + + NQ + F +L NL L++ N L +
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 335 DFINLLA---------NCSKLERLYFNR 353
D + L +CS+ E LY ++
Sbjct: 176 DRLGKLQTITLFGNQFDCSRCETLYLSQ 203
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 222 LDIAFNHFSGMIPPPIF--NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
LD++ N + P+ + +L V+ +S NR T SLP+ A L L++L GN
Sbjct: 82 LDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL-----GTRTANEL 334
P L+ +LE + + NQ + + + L+NL L + N+L G ++ L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 335 DFINL-----LANCSKLERLYFNR 353
F L L NC E LYF R
Sbjct: 198 PFAFLHGNPWLCNC---EILYFRR 218
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 222 LDIAFNHFSGMIPPPIF--NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
LD++ N + P+ + +L V+ +S NR T SLP+ A L L++L GN
Sbjct: 82 LDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL-----GTRTANEL 334
P L+ +LE + + NQ + + + L+NL L + N+L G ++ L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 335 DFINL-----LANCSKLERLYFNR 353
F L L NC E LYF R
Sbjct: 198 PFAFLHGNPWLCNC---EILYFRR 218
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 162 IPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDS--LVQLRNL 219
+ S LE+L + N I + L+ LL ++ +N L G IDS L L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKL 349
Query: 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
+LD+++NH + + +L+ ++L N+ S+P L +L+++ + N +
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408
Query: 280 GSIP 283
S P
Sbjct: 409 CSCP 412
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 216 LRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275
L L L++ +N + +++ L + L+ N+ SLP+ +L L +L G
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 276 NNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334
N S+P + ++L+ + + NQ + F +L NL L++ N L +
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 335 DFINLLA---------NCSKLERLYFNR 353
D + L +CS+ E LY ++
Sbjct: 176 DRLGKLQTITLFGNQFDCSRCEILYLSQ 203
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 222 LDIAFNHFSGMIPPPIF--NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
LD++ N + P+ + +L V+ +S NR T SLP+ A L L++L GN
Sbjct: 82 LDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL-----GTRTANEL 334
P L+ +LE + + NQ + + + L+NL L + N+L G ++ L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 335 DFINL-----LANCSKLERLYFNR 353
F L L NC E LYF R
Sbjct: 198 PFAFLHGNPWLCNC---EILYFRR 218
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 24/199 (12%)
Query: 188 ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVIS 247
A + +++L AF N I+ + L NL L++ N + + P + N++ + +
Sbjct: 44 ADLDGIATLSAF----NTGVTTIEGIQYLNNLIGLELKDNQITDLTP--LKNLTKITELE 97
Query: 248 LSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS 307
LS N V A L +++ L T P L+ S L+++ NQ +
Sbjct: 98 LSGNPLKN---VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 152
Query: 308 VDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANF 367
+ L NL +L++G N+++ + LAN SKL L + N+ + P +A+
Sbjct: 153 --LAGLTNLQYLSIG--------NNQVNDLTPLANLSKLTTLRADDNKISDISP--LASL 200
Query: 368 SSTIKQIAMGRNRISGTIP 386
+ I ++ + N+IS P
Sbjct: 201 PNLI-EVHLKDNQISDVSP 218
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 222 LDIAFNHFSGMIPPPIF--NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
LD++ N + P+ + +L V+ +S NR T SLP+ A L L++L GN
Sbjct: 82 LDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL-----GTRTANEL 334
P L+ +LE + + NQ + + + L+NL L + N+L G ++ L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 335 DFINL-----LANCSKLERLYFNR 353
F L L NC E LYF R
Sbjct: 198 PFAFLHGNPWLCNC---EILYFRR 218
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 100 LRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLV 159
+RY+ L N L +I + L L L+L+ N + +NL EL + N L
Sbjct: 65 VRYLALGGNK-LHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 160 GEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW----GRIDSLVQ 215
L L L+++HN + L++L D+ N L G D L Q
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 216 LRNLRLLD 223
L+ L L D
Sbjct: 183 LKQLSLND 190
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 285 SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344
L+N L ++E NQ F +L NL++L + N L + D + +
Sbjct: 107 KLTNLKELVLVE---NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKL------T 157
Query: 345 KLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI 389
L RL + N+ Q LP+ + + + +KQ+++ N++ ++P G+
Sbjct: 158 NLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLK-SVPDGV 200
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 222 LDIAFNHFSGMIPPPIF--NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
LD++ N + P+ + +L V+ +S NR T SLP+ A L L++L GN
Sbjct: 83 LDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 138
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL-----GTRTANEL 334
P L+ +LE + + N + + + L+NL L + N+L G ++ L
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 198
Query: 335 DFINL-----LANCSKLERLYFNR 353
F L L NC E LYF R
Sbjct: 199 PFAFLHGNPWLCNC---EILYFRR 219
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 7/151 (4%)
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
+ ++ N+ S S F RL L L + N L T A + LE L+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG------IFKELKNLETLWVT 93
Query: 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPV 412
N+ Q LP + + + ++ + RN++ P S L +L++ N V
Sbjct: 94 DNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152
Query: 413 IGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+L +L+ L L N L+ + LT L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 10/183 (5%)
Query: 246 ISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSG 304
+ L N+ + SLP A L LR L N N ++P + LE + + N+
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 305 RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSM 364
F +L NL+ L + N L + D + +KL L N Q LP+ +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL------TKLTYLSLGYNELQS-LPKGV 152
Query: 365 ANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDL 424
+ +++K++ + N++ L L +D+N L+ L++L L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 425 GGN 427
N
Sbjct: 213 QEN 215
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 222 LDIAFNHFSGMIPPPIF--NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
LD++ N + P+ + +L V+ +S NR T SLP+ A L L++L GN
Sbjct: 82 LDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL-----GTRTANEL 334
P L+ +LE + + N + + + L+NL L + N+L G ++ L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 335 DFINL-----LANCSKLERLYFNR 353
F L L NC E LYF R
Sbjct: 198 PFAFLHGNPWLCNC---EILYFRR 218
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 63 QWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLN 122
Q T +T R+ L + N I LSP + NLS L ++ + N + +I + L
Sbjct: 210 QITDITPVANXTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQ-ISDINA-VKDLT 265
Query: 123 MLEGLVLSNNSFSG-TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH 181
L+ L + +N S ++ NLS+ ++L ++ N L E IG L L LF+ NH
Sbjct: 266 KLKXLNVGSNQISDISVLNNLSQLNSLF---LNNNQLGNEDXEVIGGLTNLTTLFLSQNH 322
Query: 182 ITGQLP 187
IT P
Sbjct: 323 ITDIRP 328
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 62/233 (26%)
Query: 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV---------------- 308
L NL L+ NGN T P LSN +L + N+ + ++
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNI 122
Query: 309 -DFSRLKNLS---FLNMGIN---------------NLGTRTANELDFINLLANCSKLERL 349
D S L NL+ LN+G N N T T +++ + +AN + L L
Sbjct: 123 SDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSL 182
Query: 350 YFNRNRFQGVLP----QSMANFSSTIKQIA---------------MGRNRISGTIPPGIR 390
N N+ + + P S+ F++ + QI +G N+I+ P +
Sbjct: 183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSP--LA 240
Query: 391 SHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ + L WL + +N + + +L L+ L++G N Q S S L NL+ L
Sbjct: 241 NLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSN--QISDISVLNNLSQL 289
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 222 LDIAFNHFSGMIPPPIF--NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
LD++ N + P+ + +L V+ +S NR T SLP+ A L L++L GN
Sbjct: 82 LDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL-----GTRTANEL 334
P L+ +LE + + N + + + L+NL L + N+L G ++ L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 335 DFINL-----LANCSKLERLYFNR 353
F L L NC E LYF R
Sbjct: 198 PFAFLHGNPWLCNC---EILYFRR 218
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 222 LDIAFNHFSGMIPPPIF--NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
LD++ N + P+ + +L V+ +S NR T SLP+ A L L++L GN
Sbjct: 82 LDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL-----GTRTANEL 334
P L+ +LE + + N + + + L+NL L + N+L G ++ L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 335 DFINL-----LANCSKLERLYFNR 353
F L L NC E LYF R
Sbjct: 198 PFAFLHGNPWLCNC---EILYFRR 218
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 222 LDIAFNHFSGMIPPPIF--NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
LD++ N + P+ + +L V+ +S NR T SLP+ A L L++L GN
Sbjct: 82 LDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL-----GTRTANEL 334
P L+ +LE + + N + + + L+NL L + N+L G ++ L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 335 DFINL-----LANCSKLERLYFNR 353
F L L NC E LYF R
Sbjct: 198 PFAFLHGNPWLCNC---EILYFRR 218
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 222 LDIAFNHFSGMIPPPIF--NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
LD++ N + P+ + +L V+ +S NR T SLP+ A L L++L GN
Sbjct: 82 LDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL-----GTRTANEL 334
P L+ +LE + + N + + + L+NL L + N+L G ++ L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 335 DFINL-----LANCSKLERLYFNR 353
F L L NC E LYF R
Sbjct: 198 PFAFLHGNPWLCNC---EILYFRR 218
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 97/273 (35%), Gaps = 61/273 (22%)
Query: 88 GPLSPYVGNLSFLRYINLANNGFLG---EIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSR 144
GP+ P+ LR + ++ G ++PP L+ L NN + +
Sbjct: 22 GPVCPFRCQ-CHLRVVQCSDLGLEKVPKDLPPDTALLD------LQNNKITEIKDGDFKN 74
Query: 145 RSNLIELSVDTNYLVGEIPSAIGSLFKLERLF---------------------IFHNHIT 183
NL L + N + P A L KLERL+ + N IT
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 134
Query: 184 GQLPASIGNLSSLLAFDVRENILW------GRIDSLVQLRNLRLLDIAFNHFSGMIPPPI 237
+ L+ ++ ++ N L G + +L +R+ D +PP +
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL 194
Query: 238 FN------------------ISSLEVISLSENRFTGSLPVDAG--VNLPNLRQLSPNGNN 277
+++L + LS N + VD G N P+LR+L N N
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA---VDNGSLANTPHLRELHLNNNK 251
Query: 278 FTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDF 310
+P L++ ++++ N S S DF
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 294 MIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNR 353
+++ N+ + DF LKNL L + INN ++ + A KLERLY ++
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISP-----GAFAPLVKLERLYLSK 109
Query: 354 NRFQGVLPQSMANFSSTIKQIAMGRNRIS 382
N+ + LP+ M T++++ + N I+
Sbjct: 110 NQLKE-LPEKMP---KTLQELRVHENEIT 134
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 97/273 (35%), Gaps = 61/273 (22%)
Query: 88 GPLSPYVGNLSFLRYINLANNGFLG---EIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSR 144
GP+ P+ LR + ++ G ++PP L+ L NN + +
Sbjct: 22 GPVCPFRCQ-CHLRVVQCSDLGLEKVPKDLPPDTALLD------LQNNKITEIKDGDFKN 74
Query: 145 RSNLIELSVDTNYLVGEIPSAIGSLFKLERLF---------------------IFHNHIT 183
NL L + N + P A L KLERL+ + N IT
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 134
Query: 184 GQLPASIGNLSSLLAFDVRENILW------GRIDSLVQLRNLRLLDIAFNHFSGMIPPPI 237
+ L+ ++ ++ N L G + +L +R+ D +PP +
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL 194
Query: 238 FN------------------ISSLEVISLSENRFTGSLPVDAG--VNLPNLRQLSPNGNN 277
+++L + LS N + VD G N P+LR+L N N
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA---VDNGSLANTPHLRELHLNNNK 251
Query: 278 FTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDF 310
+P L++ ++++ N S S DF
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 294 MIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNR 353
+++ N+ + DF LKNL L + INN ++ + A KLERLY ++
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISP-----GAFAPLVKLERLYLSK 109
Query: 354 NRFQGVLPQSMANFSSTIKQIAMGRNRIS 382
N+ + LP+ M T++++ + N I+
Sbjct: 110 NQLKE-LPEKMP---KTLQELRVHENEIT 134
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154
G LR + ++ G L +P +I L L L NN S + +L L +
Sbjct: 30 GCHCHLRVVQCSDLG-LKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLV 86
Query: 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLV 214
N + A L KL++L+I NH+ ++P ++ SSL+ + +N RI +
Sbjct: 87 NNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDN----RIRKVP 139
Query: 215 Q-----LRNLRLLDIAFNHFSGM-IPPPIFNISSLEVISLSENRFTGSLPVD 260
+ LRN+ +++ N P F+ L + +SE + TG +P D
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKD 190
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 36/152 (23%)
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL 340
++P +S + L ++ N S DF L++L L + +NN ++ +E F L
Sbjct: 47 AVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVL-VNNKISKI-HEKAFSPL- 101
Query: 341 ANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTM 400
KL++LY ++N + P N S++ ++ + NRI +P G+
Sbjct: 102 ---RKLQKLYISKNHLVEIPP----NLPSSLVELRIHDNRIR-KVPKGV----------- 142
Query: 401 DSNLFTGTIPPVIGELKNLQLLDLGGNFLQGS 432
F+G L+N+ +++GGN L+ S
Sbjct: 143 ----FSG--------LRNMNCIEMGGNPLENS 162
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 97 LSFLRYINLANNGFLGEIPPQIGR-LNMLEGLVLSNNSFSGTIPTNLSRR-SNLIELSVD 154
L L ++L G L E+ P + R L L+ L L +N+ +P N R NL L +
Sbjct: 103 LGHLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLH 160
Query: 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLA-FDVRENILWGRIDSL 213
N + A L L+RL + NH+ P + +L L+ + N+ + L
Sbjct: 161 GNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVL 220
Query: 214 VQLRNLRLLDI 224
V LR+L+ L +
Sbjct: 221 VPLRSLQYLRL 231
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 244 EVISLSENRFTGSLPVDAGV--NLPNLRQLSPNGNNFTGSIPVSLSNA-SRLEMIEFSRN 300
+++ L +N+ T P GV +L NL++L G+N G++PV + ++ ++L +++ N
Sbjct: 43 QILYLHDNQITKLEP---GVFDSLINLKELY-LGSNQLGALPVGVFDSLTQLTVLDLGTN 98
Query: 301 QFSGRVSVDFSRLKNLSFLNMGINNL 326
Q + S F RL +L L M N L
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKL 124
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 378 RNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP--- 434
R++ ++P GI ++A + L + N T P V L NL+ L LG N L G++P
Sbjct: 27 RSKRHASVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV 83
Query: 435 -SSLGNLTLL 443
SL LT+L
Sbjct: 84 FDSLTQLTVL 93
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 36/135 (26%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYL--VGEIPSAIGSLFKLERLFIFHNH 181
L+ L LS+N S P L + L ELSV+ N L + IPSA L RLF+ +N
Sbjct: 65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC-----LSRLFLDNNE 117
Query: 182 ITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNIS 241
+ DSL+ L+NL +L I N ++ + +S
Sbjct: 118 LRD-------------------------TDSLIHLKNLEILSIRNNKLKSIV--MLGFLS 150
Query: 242 SLEVISLSENRFTGS 256
LEV+ L N T +
Sbjct: 151 KLEVLDLHGNEITNT 165
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 233 IPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
+PP +F N+ L V+ L N + SLP N P L LS + NN + +
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328
L+ ++ S N+ + VD S + +L N+ N L T
Sbjct: 167 LQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLST 200
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 233 IPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
+PP +F N+ L V+ L N + SLP N P L LS + NN + +
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328
L+ ++ S N+ + VD S + +L N+ N L T
Sbjct: 173 LQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLLST 206
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 25/310 (8%)
Query: 124 LEGLVLSNNSFSGTIPTNLS--RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH 181
++ L L+NN T + S + +NL +L + N L + L L L + +N+
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 182 ITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNIS 241
I P S LS+L ++ + SL N+ D +F + N+
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLKRAFTKQSV-SLASHPNID--DFSFQWLKYL---EYLNMD 337
Query: 242 SLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
+ S N FTG + + +L + + T VSL++ S L + ++N
Sbjct: 338 DNNIPSTKSNTFTGLV----SLKYLSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTKNH 392
Query: 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP 361
S + FS L L L++G+N + + + + + +Y + N++ +
Sbjct: 393 ISKIANGTFSWLGQLRILDLGLNEIEQKLSGQE-----WRGLRNIFEIYLSYNKYLQLST 447
Query: 362 QSMANFSS----TIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELK 417
S A S ++++A+ IS P R NL L + +N ++ L+
Sbjct: 448 SSFALVPSLQRLMLRRVALKNVDIS---PSPFRPLRNLTILDLSNNNIANINEDLLEGLE 504
Query: 418 NLQLLDLGGN 427
NL++LD N
Sbjct: 505 NLEILDFQHN 514
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 72 RHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGR 120
+H + RL ++ + GGP+ ++ LS L +NL +NGF EIP ++ +
Sbjct: 522 QHNNLARL-WKHANPGGPIY-FLKGLSHLHILNLESNGF-DEIPVEVFK 567
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 72 RHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGR 120
+H + RL ++ + GGP+ ++ LS L +NL +NGF EIP ++ +
Sbjct: 517 QHNNLARL-WKHANPGGPIY-FLKGLSHLHILNLESNGF-DEIPVEVFK 562
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 72 RHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGR 120
+H + RL ++ + GGP+ ++ LS L +NL +NGF EIP ++ +
Sbjct: 512 QHNNLARL-WKHANPGGPIY-FLKGLSHLHILNLESNGF-DEIPVEVFK 557
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,128,080
Number of Sequences: 62578
Number of extensions: 484563
Number of successful extensions: 1337
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 227
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)