Query 040495
Match_columns 443
No_of_seqs 356 out of 4373
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.6E-52 7.8E-57 448.1 35.3 407 31-442 27-453 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.7E-44 5.9E-49 387.1 26.6 368 74-443 164-573 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.4E-37 5.1E-42 288.8 9.1 357 74-440 78-439 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.6E-35 1.4E-39 272.5 8.1 358 76-443 54-418 (873)
5 KOG0444 Cytoskeletal regulator 100.0 5.9E-35 1.3E-39 274.9 -4.8 351 74-441 7-362 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 1.6E-34 3.4E-39 259.0 -8.2 341 75-430 69-541 (565)
7 KOG0472 Leucine-rich repeat pr 100.0 2.8E-33 6.1E-38 251.0 -4.4 310 77-406 94-541 (565)
8 KOG0444 Cytoskeletal regulator 100.0 2.9E-32 6.4E-37 256.8 -2.6 331 96-442 5-340 (1255)
9 KOG0618 Serine/threonine phosp 99.9 1.1E-28 2.3E-33 242.5 -0.1 335 75-428 46-487 (1081)
10 PLN03210 Resistant to P. syrin 99.9 5.9E-24 1.3E-28 230.3 25.7 287 122-428 611-904 (1153)
11 PLN03210 Resistant to P. syrin 99.9 7.4E-24 1.6E-28 229.5 25.9 346 74-442 532-894 (1153)
12 KOG0618 Serine/threonine phosp 99.9 4.2E-27 9.1E-32 231.4 -2.9 347 75-435 22-471 (1081)
13 PRK15387 E3 ubiquitin-protein 99.9 3.8E-23 8.3E-28 209.2 16.7 264 123-437 202-465 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 1E-22 2.2E-27 206.0 18.1 264 99-413 202-465 (788)
15 PRK15370 E3 ubiquitin-protein 99.9 1.8E-21 3.9E-26 198.2 19.1 339 26-406 56-428 (754)
16 KOG4237 Extracellular matrix p 99.9 8.9E-24 1.9E-28 189.8 -2.8 252 74-327 67-359 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 2.5E-20 5.3E-25 190.0 13.3 246 147-430 179-428 (754)
18 KOG4237 Extracellular matrix p 99.8 5.4E-23 1.2E-27 184.9 -6.2 333 99-441 68-488 (498)
19 cd00116 LRR_RI Leucine-rich re 99.8 3.6E-21 7.8E-26 181.8 4.7 284 126-429 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 8.8E-21 1.9E-25 179.2 2.7 57 79-135 3-64 (319)
21 KOG0617 Ras suppressor protein 99.7 1.8E-19 3.8E-24 144.5 -4.3 159 123-288 34-194 (264)
22 KOG0617 Ras suppressor protein 99.7 3.4E-19 7.4E-24 142.9 -4.5 164 264-440 31-195 (264)
23 PLN03150 hypothetical protein; 99.6 3.7E-15 8E-20 151.5 14.4 152 28-183 367-528 (623)
24 COG4886 Leucine-rich repeat (L 99.3 5.9E-12 1.3E-16 122.4 8.8 196 126-330 97-293 (394)
25 COG4886 Leucine-rich repeat (L 99.3 6.8E-12 1.5E-16 122.0 8.6 178 241-434 116-294 (394)
26 KOG1909 Ran GTPase-activating 99.3 1.9E-12 4.1E-17 115.9 3.3 251 165-429 25-310 (382)
27 KOG0532 Leucine-rich repeat (L 99.3 1.7E-13 3.7E-18 129.6 -3.6 192 218-427 76-270 (722)
28 KOG1909 Ran GTPase-activating 99.3 7.9E-13 1.7E-17 118.2 0.1 251 141-405 25-310 (382)
29 KOG0532 Leucine-rich repeat (L 99.2 4.8E-13 1.1E-17 126.6 -2.3 170 77-254 78-247 (722)
30 PF14580 LRR_9: Leucine-rich r 99.2 2.2E-11 4.7E-16 102.2 6.9 123 290-424 19-147 (175)
31 KOG3207 Beta-tubulin folding c 99.2 3.8E-12 8.3E-17 117.0 1.2 167 191-357 143-314 (505)
32 KOG1259 Nischarin, modulator o 99.2 1.4E-11 3E-16 108.1 2.7 132 287-431 281-413 (490)
33 KOG3207 Beta-tubulin folding c 99.1 5.1E-12 1.1E-16 116.2 -1.0 208 193-406 120-339 (505)
34 PLN03150 hypothetical protein; 99.1 1.9E-10 4.1E-15 117.4 9.9 113 291-410 419-532 (623)
35 KOG1259 Nischarin, modulator o 99.1 3.2E-11 7E-16 105.9 1.7 130 216-357 283-412 (490)
36 PF14580 LRR_9: Leucine-rich r 99.1 3.6E-10 7.8E-15 94.9 7.1 110 239-357 17-126 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.0 5.8E-10 1.3E-14 116.4 6.7 251 74-329 545-809 (889)
38 KOG4658 Apoptotic ATPase [Sign 99.0 8.6E-10 1.9E-14 115.2 7.8 105 99-204 546-652 (889)
39 KOG0531 Protein phosphatase 1, 98.9 2.4E-10 5.3E-15 111.5 -1.6 106 144-254 70-175 (414)
40 KOG2120 SCF ubiquitin ligase, 98.8 7.1E-11 1.5E-15 103.6 -6.1 230 63-300 127-373 (419)
41 PF13855 LRR_8: Leucine rich r 98.8 5.2E-09 1.1E-13 72.2 3.2 61 369-429 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.7 8.4E-10 1.8E-14 107.7 -1.8 250 96-361 70-322 (414)
43 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.9E-13 70.1 3.5 57 268-324 3-59 (61)
44 KOG1859 Leucine-rich repeat pr 98.6 2.2E-09 4.7E-14 105.0 -4.3 128 266-406 164-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.6 2.7E-09 5.8E-14 93.9 -3.7 86 243-328 187-274 (419)
46 PF08263 LRRNT_2: Leucine rich 98.6 1.1E-07 2.3E-12 60.1 4.5 39 32-70 2-43 (43)
47 KOG4579 Leucine-rich repeat (L 98.5 1.1E-08 2.4E-13 79.8 -0.6 87 340-429 49-135 (177)
48 KOG2982 Uncharacterized conser 98.5 3.1E-08 6.7E-13 87.3 1.1 86 265-350 198-285 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.5 8.1E-08 1.8E-12 83.7 2.6 88 167-254 27-133 (388)
50 COG5238 RNA1 Ran GTPase-activa 98.5 4.7E-08 1E-12 85.1 1.0 206 74-280 30-286 (388)
51 KOG1859 Leucine-rich repeat pr 98.4 6.9E-09 1.5E-13 101.6 -6.2 126 218-356 165-291 (1096)
52 KOG4579 Leucine-rich repeat (L 98.3 6.2E-08 1.3E-12 75.7 -1.2 136 292-438 29-167 (177)
53 KOG2982 Uncharacterized conser 98.3 3.5E-07 7.6E-12 80.8 2.5 213 144-361 43-266 (418)
54 PF12799 LRR_4: Leucine Rich r 98.1 3.8E-06 8.3E-11 53.0 3.1 36 394-430 2-37 (44)
55 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.3E-10 67.7 5.9 104 315-427 43-150 (233)
56 PF12799 LRR_4: Leucine Rich r 97.9 9E-06 1.9E-10 51.3 3.2 36 370-406 2-37 (44)
57 PRK15386 type III secretion pr 97.9 5.5E-05 1.2E-09 71.8 9.6 137 237-404 48-188 (426)
58 PRK15386 type III secretion pr 97.9 2.7E-05 5.8E-10 73.8 7.5 138 213-380 48-188 (426)
59 KOG3665 ZYG-1-like serine/thre 97.9 6.2E-06 1.3E-10 84.5 2.1 94 264-359 171-265 (699)
60 KOG4341 F-box protein containi 97.7 1.9E-06 4.1E-11 79.8 -4.6 300 99-400 139-459 (483)
61 KOG3665 ZYG-1-like serine/thre 97.7 2.9E-05 6.3E-10 79.7 3.4 136 242-385 123-266 (699)
62 KOG4341 F-box protein containi 97.6 2.7E-06 5.9E-11 78.7 -4.2 82 123-204 139-226 (483)
63 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.6E-09 61.5 5.7 82 169-250 63-149 (233)
64 PF13306 LRR_5: Leucine rich r 97.2 0.0012 2.7E-08 52.8 6.9 60 286-353 8-67 (129)
65 PF13306 LRR_5: Leucine rich r 97.2 0.00094 2E-08 53.5 5.8 59 237-298 8-66 (129)
66 KOG2123 Uncharacterized conser 97.0 4.8E-05 1E-09 67.0 -3.7 89 265-362 18-106 (388)
67 PF00560 LRR_1: Leucine Rich R 96.9 0.00032 6.9E-09 36.9 0.6 22 418-440 1-22 (22)
68 KOG2739 Leucine-rich acidic nu 96.9 0.00046 1E-08 60.5 1.8 65 92-158 37-103 (260)
69 KOG2739 Leucine-rich acidic nu 96.9 0.00069 1.5E-08 59.4 2.5 86 264-352 63-151 (260)
70 KOG2123 Uncharacterized conser 96.5 0.00031 6.6E-09 62.1 -2.3 98 290-399 19-123 (388)
71 KOG1947 Leucine rich repeat pr 96.3 0.00043 9.2E-09 69.2 -2.9 60 217-276 243-305 (482)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0059 1.3E-07 31.9 0.7 18 395-413 2-19 (22)
73 KOG4308 LRR-containing protein 95.2 0.00027 5.9E-09 69.5 -8.9 84 219-302 89-184 (478)
74 PF13504 LRR_7: Leucine rich r 94.6 0.021 4.5E-07 27.7 1.2 13 418-430 2-14 (17)
75 KOG1947 Leucine rich repeat pr 94.5 0.02 4.3E-07 57.2 2.1 134 264-402 186-330 (482)
76 KOG4308 LRR-containing protein 94.4 0.00055 1.2E-08 67.4 -9.0 207 194-403 87-328 (478)
77 KOG0473 Leucine-rich repeat pr 91.9 0.0047 1E-07 53.3 -5.9 88 339-430 37-124 (326)
78 KOG3864 Uncharacterized conser 91.8 0.029 6.4E-07 47.6 -1.3 36 368-403 150-186 (221)
79 KOG0473 Leucine-rich repeat pr 91.4 0.0054 1.2E-07 53.0 -6.1 85 94-181 38-122 (326)
80 smart00370 LRR Leucine-rich re 91.1 0.19 4.2E-06 27.3 2.0 19 417-436 2-20 (26)
81 smart00369 LRR_TYP Leucine-ric 91.1 0.19 4.2E-06 27.3 2.0 19 417-436 2-20 (26)
82 smart00370 LRR Leucine-rich re 90.8 0.26 5.6E-06 26.7 2.3 20 344-364 2-21 (26)
83 smart00369 LRR_TYP Leucine-ric 90.8 0.26 5.6E-06 26.7 2.3 20 344-364 2-21 (26)
84 PF13516 LRR_6: Leucine Rich r 90.7 0.036 7.8E-07 29.6 -1.2 16 417-432 2-17 (24)
85 PF13516 LRR_6: Leucine Rich r 90.3 0.1 2.2E-06 27.8 0.4 13 370-382 3-15 (24)
86 KOG3864 Uncharacterized conser 86.2 0.22 4.7E-06 42.5 -0.1 80 75-154 102-184 (221)
87 KOG4242 Predicted myosin-I-bin 82.9 8.7 0.00019 37.4 8.9 235 171-406 215-481 (553)
88 smart00364 LRR_BAC Leucine-ric 82.6 0.89 1.9E-05 24.7 1.4 18 417-435 2-19 (26)
89 smart00368 LRR_RI Leucine rich 74.2 2.7 5.8E-05 23.2 1.7 14 417-430 2-15 (28)
90 smart00365 LRR_SD22 Leucine-ri 74.1 3 6.4E-05 22.7 1.8 15 416-430 1-15 (26)
91 KOG3763 mRNA export factor TAP 62.8 5.3 0.00011 39.6 2.2 39 312-354 216-254 (585)
92 KOG3763 mRNA export factor TAP 56.1 9.1 0.0002 38.0 2.6 67 263-329 215-285 (585)
93 smart00367 LRR_CC Leucine-rich 41.4 19 0.00042 19.2 1.4 15 416-430 1-16 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-52 Score=448.12 Aligned_cols=407 Identities=32% Similarity=0.521 Sum_probs=266.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcC
Q 040495 31 NETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGF 110 (443)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~ 110 (443)
++.|+.+|++||.++.+|.+...+|....+||.|.|++|+.. .+|+.|+++++.+.|.++..+..+++|++|++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 458999999999999888878899988889999999999864 6899999999999999999999999999999999999
Q ss_pred CCCCchhhc-CCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCcc
Q 040495 111 LGEIPPQIG-RLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPAS 189 (443)
Q Consensus 111 ~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 189 (443)
.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 988887765 788888888888877766664 34566666666666666666666666666666666666666666666
Q ss_pred ccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCC
Q 040495 190 IGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNL 268 (443)
Q Consensus 190 l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L 268 (443)
+.++++|++|++++|.+.+.. ..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+. ++++|
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L 262 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNL 262 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCC
Confidence 666666666666666655444 4555566666666666666655665566666666666666665555555444 55555
Q ss_pred cEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchh-------------
Q 040495 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD------------- 335 (443)
Q Consensus 269 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------- 335 (443)
++|++++|++.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..+..+.
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 5666555555555555555555555555555555555555555555555555555555554441000
Q ss_pred -----hHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 336 -----FINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 336 -----~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
.+..+..+++|+.|++++|++++.+|..+... ++++.|++++|++.+.+|..+..+++|+.|++++|.+++.+|
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 00334444555555555555554555444442 445555555555555555555556666666666666666666
Q ss_pred hhhcCCCCCCEEEccCCcCcccCCccccCCCC
Q 040495 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 411 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 442 (443)
..+..+++|+.|++++|+++|.+|..++.+++
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 66666666666666666666666655554443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-44 Score=387.10 Aligned_cols=368 Identities=34% Similarity=0.588 Sum_probs=271.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 57889999999988888888899999999999999988888888888999999999988888888888888888888888
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.. ..+..+++|+.|++++|.+.+.
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 888888888888888888888888888888778877888888888888887776555 4556667777777777776666
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccC------------------------CccCcC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSI------------------------PVSLSN 288 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------------------------~~~l~~ 288 (443)
+|..+..+++|+.|++++|.+++.+|..+. .+++|+.|++++|++++.+ |..+..
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 666666666666666666666666665544 4555555555555554444 444445
Q ss_pred CCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhh-----------------HhhhcCCCCCCEEEc
Q 040495 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF-----------------INLLANCSKLERLYF 351 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~~~~~~~L~~L~l 351 (443)
+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..... .......++|+.|++
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l 482 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence 555555555555555555555555556666666665555544321000 000112345677777
Q ss_pred cCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 352 NRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 352 ~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++|++++.+|..+..+ ++|+.|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|+.||+++|+++|
T Consensus 483 s~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 483 SRNQFSGAVPRKLGSL-SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred cCCccCCccChhhhhh-hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 7777777777777664 678888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCccccCCCCC
Q 040495 432 SIPSSLGNLTLL 443 (443)
Q Consensus 432 ~~p~~~~~l~~L 443 (443)
.+|..+.+++.|
T Consensus 562 ~~p~~l~~l~~L 573 (968)
T PLN00113 562 EIPKNLGNVESL 573 (968)
T ss_pred cCChhHhcCccc
Confidence 888887776543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-37 Score=288.84 Aligned_cols=357 Identities=22% Similarity=0.244 Sum_probs=316.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++.||+++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|++.+|.|+..-.+.+..++.|+.||+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 45788999999999888888999999999999999998 89987777788999999999999777888999999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
+.|.++..--..|..-.++++|+++.|.++..-...|..+.+|..|.++.|.++..+ ..|.++++|+.|++..|.+.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 999998544456666789999999999999877788999999999999999999988 7788899999999999998744
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
--..|..+++|+.|.+..|.+. .+.+..|..+.++++|+|..|+++..--.++-++++|+.|+++.|.|....+....-
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 4556889999999999999998 777788889999999999999999777778889999999999999999988888889
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCc---hhh
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP---PGI 389 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p---~~l 389 (443)
+++|++|++++|+++...+ ..|..+..|++|+|++|+++ .+.+..+...++|+.|||++|.++..|. ..+
T Consensus 316 tqkL~~LdLs~N~i~~l~~------~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDE------GSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred cccceeEeccccccccCCh------hHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 9999999999999999888 67888999999999999998 6666666667899999999999998764 456
Q ss_pred hcCCCCCeEeCcCCcCcccCch-hhcCCCCCCEEEccCCcCcccCCccccCC
Q 040495 390 RSHANLNWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 390 ~~~~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
..+++|++|.|.||++. .+|. +|.++..|++|||.+|.+...-|..|..+
T Consensus 389 ~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc
Confidence 77999999999999998 5554 89999999999999999987777777654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-35 Score=272.54 Aligned_cols=358 Identities=19% Similarity=0.199 Sum_probs=301.7
Q ss_pred EEEEEcCCCCCcccccccccC--CCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 76 VTRLDLRNQSIGGPLSPYVGN--LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 76 v~~L~l~~~~~~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+.+|.++..+...--..+.. .+.-+.|++++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|++
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 345555555544321111111 134577999999999888999999999999999999998 88987777788999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
.+|.++....+.+..++.|+.|+++.|.++..--..+..-.++++|++++|.++... ..|..+.+|..|.+++|.++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 999999777788999999999999999998554456777789999999999999877 8889999999999999999966
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
.+..|.++++|+.|++..|++. .+....|..+++|+.|.+..|++...-...|..+.++++|++..|+++..-..++.+
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred CHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 6667778999999999999987 555556678999999999999998777888999999999999999999888889999
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcC
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH 392 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~ 392 (443)
++.|+.|++++|.+....+ ....-+++|++|+|+.|+++..-+..+.. ...|+.|+|++|.++-.....|..+
T Consensus 292 Lt~L~~L~lS~NaI~rih~------d~WsftqkL~~LdLs~N~i~~l~~~sf~~-L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHI------DSWSFTQKLKELDLSSNRITRLDEGSFRV-LSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred cchhhhhccchhhhheeec------chhhhcccceeEeccccccccCChhHHHH-HHHhhhhcccccchHHHHhhHHHHh
Confidence 9999999999999998888 45667899999999999999444455555 4899999999999996666778899
Q ss_pred CCCCeEeCcCCcCcccCch---hhcCCCCCCEEEccCCcCcccCC-ccccCCCCC
Q 040495 393 ANLNWLTMDSNLFTGTIPP---VIGELKNLQLLDLGGNFLQGSIP-SSLGNLTLL 443 (443)
Q Consensus 393 ~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L 443 (443)
++|++|||+.|.+++.+.+ .|..+++|+.|++.+|++. .|| ..|.++..|
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~L 418 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEAL 418 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCccc
Confidence 9999999999999977765 5778999999999999997 666 466666543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=5.9e-35 Score=274.94 Aligned_cols=351 Identities=23% Similarity=0.361 Sum_probs=281.3
Q ss_pred CcEEEEEcCCCCCc-ccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceee
Q 040495 74 QRVTRLDLRNQSIG-GPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELS 152 (443)
Q Consensus 74 ~~v~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 152 (443)
.-|+.+|+++|.++ +..|.....++.++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 45888999999998 468888889999999999888876 78999999999999999999887 6666788889999999
Q ss_pred ccCCccc-ccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCC
Q 040495 153 VDTNYLV-GEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFS 230 (443)
Q Consensus 153 l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~ 230 (443)
+..|++. .-+|..+-.+..|..|++++|++. ..|..+..-+++-.|++++|.+...+ +.+.++..|-.||+++|.+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 9888875 347888888999999999999998 78888888889999999999888887 67778888899999999887
Q ss_pred CCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCC-ccCCccCcCCCCCCEEecccCcCccccchh
Q 040495 231 GMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT-GSIPVSLSNASRLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 231 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 309 (443)
.+|+.+..+..|++|.+++|.+...--..+. .+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 6788888888999999998876521111111 4567777888776433 357888888888999999998887 67888
Q ss_pred hhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeec-Cchh
Q 040495 310 FSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT-IPPG 388 (443)
Q Consensus 310 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~-~p~~ 388 (443)
+..+++|+.|++++|.++..... .....+|+.|++++|+++ .+|..+..+ +.|+.|.+.+|+++=+ ||..
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~-------~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMT-------EGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred HhhhhhhheeccCcCceeeeecc-------HHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcccccCCccc
Confidence 88889999999999988765542 333467888888888888 788888875 7788888888876533 7888
Q ss_pred hhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCC
Q 040495 389 IRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 389 l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 441 (443)
++.+.+|+.+...+|.+. .+|+.++.+.+|+.|.|++|++- ++|+.+.-|+
T Consensus 312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~ 362 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP 362 (1255)
T ss_pred hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence 888888888888888776 78888888888888888888876 6777665443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.6e-34 Score=259.01 Aligned_cols=341 Identities=27% Similarity=0.414 Sum_probs=252.3
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 154 (443)
.++.+++++|.+.. .|++++.+..++.++.++|.+. .+|..++.+.+++.++++.|.+. ..|+.++.+..|+.++..
T Consensus 69 ~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 46777777777653 5667777888888888888776 77888888888888888888887 777778888888888888
Q ss_pred CCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCC
Q 040495 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP 234 (443)
Q Consensus 155 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
+|+++ ..|+++.++.++..+++.+|++.. .|+..-+++.|+++|...|.+...++.++.+.+|..|++..|++. .+|
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP 222 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP 222 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC
Confidence 88887 778888888888888888888874 444444488888888888888888888888888888888888886 445
Q ss_pred ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCC
Q 040495 235 PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
.|..++.|+++++..|.+. .+|.+...+++++..|+++.|++. ++|..+..+.+|+.||+++|.+++ .|..++++
T Consensus 223 -ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl- 297 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL- 297 (565)
T ss_pred -CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-
Confidence 6777888888888888776 778777777888888888888887 777777778888888888888874 45557777
Q ss_pred CCCEEEccCCCCcccCC---------------------------------------------------------------
Q 040495 315 NLSFLNMGINNLGTRTA--------------------------------------------------------------- 331 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~--------------------------------------------------------------- 331 (443)
+|+.|-+.+|.+...-.
T Consensus 298 hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V 377 (565)
T KOG0472|consen 298 HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV 377 (565)
T ss_pred eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC
Confidence 77777777776521000
Q ss_pred --Cch------------------------------------------h-hHhhhcCCCCCCEEEccCCcCcccCChhHhh
Q 040495 332 --NEL------------------------------------------D-FINLLANCSKLERLYFNRNRFQGVLPQSMAN 366 (443)
Q Consensus 332 --~~~------------------------------------------~-~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (443)
..| + .+..++.+++|+.|++++|.+- .+|..++.
T Consensus 378 PdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~ 456 (565)
T KOG0472|consen 378 PDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS 456 (565)
T ss_pred CHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhh
Confidence 000 0 0113455677777777777666 67777776
Q ss_pred hccCCCEEeccCCcCeecCch------------------------hhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEE
Q 040495 367 FSSTIKQIAMGRNRISGTIPP------------------------GIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLL 422 (443)
Q Consensus 367 ~~~~L~~L~L~~n~l~~~~p~------------------------~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 422 (443)
+ ..|+.|+++.|+|. .+|. .+.++.+|..|||.+|.+. .+|..++++++|++|
T Consensus 457 l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hL 533 (565)
T KOG0472|consen 457 L-VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHL 533 (565)
T ss_pred h-hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEE
Confidence 5 45777777777555 3332 3556777778888777777 777778888888888
Q ss_pred EccCCcCc
Q 040495 423 DLGGNFLQ 430 (443)
Q Consensus 423 ~l~~n~l~ 430 (443)
++++|+|.
T Consensus 534 eL~gNpfr 541 (565)
T KOG0472|consen 534 ELDGNPFR 541 (565)
T ss_pred EecCCccC
Confidence 88888776
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2.8e-33 Score=250.99 Aligned_cols=310 Identities=30% Similarity=0.482 Sum_probs=199.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhc------------
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSR------------ 144 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~------------ 144 (443)
+.++.++|.+. .+|+.+..+..++.+++++|.+. .+|+.++.+..++.++..+|+++ ..|+.+.+
T Consensus 94 ~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n 170 (565)
T KOG0472|consen 94 KSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGN 170 (565)
T ss_pred HHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcccc
Confidence 34444555443 24445555555555555555544 44444444444444444444444 33433333
Q ss_pred -----------CCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-cc
Q 040495 145 -----------RSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DS 212 (443)
Q Consensus 145 -----------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~ 212 (443)
++.|++++...|-++ .+|+.++.+.+|+.|++.+|++. ..| .|.++..|+++.++.|.+...+ ..
T Consensus 171 ~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~ 247 (565)
T KOG0472|consen 171 KLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEH 247 (565)
T ss_pred chhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHH
Confidence 555666666555554 66666666667777777777666 445 5666677777777777666655 44
Q ss_pred ccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCc------------
Q 040495 213 LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG------------ 280 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~------------ 280 (443)
..+++++..||+.+|++. ..|..+.-+.+|+.||+++|.++ .+|..++ ++ +|+.|.+.+|.+..
T Consensus 248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg-nl-hL~~L~leGNPlrTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG-NL-HLKFLALEGNPLRTIRREIISKGTQE 323 (565)
T ss_pred hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc-cc-eeeehhhcCCchHHHHHHHHcccHHH
Confidence 457777888888888876 56777777778888888888887 6776666 55 77777777776420
Q ss_pred ----------------------------------------------------cCCccCcCC---CCCCEEecccCcCc--
Q 040495 281 ----------------------------------------------------SIPVSLSNA---SRLEMIEFSRNQFS-- 303 (443)
Q Consensus 281 ----------------------------------------------------~~~~~l~~~---~~L~~L~l~~n~l~-- 303 (443)
.+|...... .-...++++.|++.
T Consensus 324 vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el 403 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL 403 (565)
T ss_pred HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh
Confidence 000000000 01334555555542
Q ss_pred ---------------------cccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh
Q 040495 304 ---------------------GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 304 ---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (443)
+.+|..+..+++|..|++++|-+.+.+. .++.+..|+.|+++.|+|. .+|.
T Consensus 404 Pk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~-------e~~~lv~Lq~LnlS~NrFr-~lP~ 475 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE-------EMGSLVRLQTLNLSFNRFR-MLPE 475 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch-------hhhhhhhhheecccccccc-cchH
Confidence 2455566788999999999887776543 4666777888888888776 4444
Q ss_pred h------------------------HhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc
Q 040495 363 S------------------------MANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 363 ~------------------------~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
. +.. +.+|+.|||.+|.+. .+|..++++++|+.|+++||+|.
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~n-m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKN-MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhh-hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 3 333 378999999999999 89999999999999999999997
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.9e-32 Score=256.83 Aligned_cols=331 Identities=24% Similarity=0.397 Sum_probs=287.0
Q ss_pred CCCCCCEEeCCCCcCCC-CCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccE
Q 040495 96 NLSFLRYINLANNGFLG-EIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLER 174 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 174 (443)
-++..+-.|+++|.|.| ..|.....+++++.|.+....+. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 46778889999999994 68999999999999999999998 89999999999999999999988 55566788999999
Q ss_pred eeeeccccC-ccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCc-cccCCCCCcEEEcccCc
Q 040495 175 LFIFHNHIT-GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP-PIFNISSLEVISLSENR 252 (443)
Q Consensus 175 L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~ 252 (443)
+.+.+|++. ..+|..+..+..|+.||+++|.+...+..+..-+++..|++++|++. .+|. -+.+++.|-.|++++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 999999884 46888899999999999999999998888888899999999999998 4554 45688999999999999
Q ss_pred CcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCc-cccchhhhCCCCCCEEEccCCCCcccCC
Q 040495 253 FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS-GRVSVDFSRLKNLSFLNMGINNLGTRTA 331 (443)
Q Consensus 253 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 331 (443)
+. .+|..+. .+..|++|.|++|.+...-...+..+++|++|.+++.+-+ ..+|.++..+.+|+.+|++.|++...+
T Consensus 162 Le-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP- 238 (1255)
T KOG0444|consen 162 LE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP- 238 (1255)
T ss_pred hh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-
Confidence 98 8888887 7899999999999875333334455778889999887543 467888999999999999999887644
Q ss_pred CchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc-ccCc
Q 040495 332 NELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT-GTIP 410 (443)
Q Consensus 332 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~-~~~p 410 (443)
..+-++++|+.|+|++|+++ ++......+ .++++|++|.|+++ .+|..++.++.|+.|++.+|+++ ..+|
T Consensus 239 ------ecly~l~~LrrLNLS~N~it-eL~~~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 239 ------ECLYKLRNLRRLNLSGNKIT-ELNMTEGEW-ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred ------HHHhhhhhhheeccCcCcee-eeeccHHHH-hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc
Confidence 45778899999999999999 666666664 78999999999999 89999999999999999999876 4699
Q ss_pred hhhcCCCCCCEEEccCCcCcccCCccccCCCC
Q 040495 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 411 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 442 (443)
..++.+..|+.+...+|.+. .+|+.++.|..
T Consensus 310 SGIGKL~~Levf~aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred cchhhhhhhHHHHhhccccc-cCchhhhhhHH
Confidence 99999999999999999886 89999987754
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-28 Score=242.53 Aligned_cols=335 Identities=26% Similarity=0.367 Sum_probs=230.0
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 154 (443)
++++||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+.+++.+|+++.|.+|.+. ..|..+..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4778888887764 45666677777777777777665 55566666666666666666555 566666666666666666
Q ss_pred CCcccccCCccccCC----------------------------------------cCcc-EeeeeccccCccC-------
Q 040495 155 TNYLVGEIPSAIGSL----------------------------------------FKLE-RLFIFHNHITGQL------- 186 (443)
Q Consensus 155 ~n~l~~~~p~~l~~l----------------------------------------~~L~-~L~l~~n~l~~~~------- 186 (443)
.|.+. .+|..+..+ ..++ .+++++|.+....
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l 201 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANL 201 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccch
Confidence 66553 222111100 0111 1333333222000
Q ss_pred -----------------C---------------ccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCC
Q 040495 187 -----------------P---------------ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP 234 (443)
Q Consensus 187 -----------------~---------------~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
| ..-..-.+|++++++.|.+++.+..+..+.+|+.++..+|.++ .+|
T Consensus 202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp 280 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALP 280 (1081)
T ss_pred hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhH
Confidence 0 0001123577777888877777777788888888888888884 556
Q ss_pred ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccC--------------------------cC
Q 040495 235 PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL--------------------------SN 288 (443)
Q Consensus 235 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l--------------------------~~ 288 (443)
..+....+|+.|.+..|.+. .+|.... ....|++|+|..|++. ..|..+ ..
T Consensus 281 ~ri~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 66666666666666666665 5555443 4666666666666664 222111 12
Q ss_pred CCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc
Q 040495 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (443)
.+.|+.|.+.+|.+++...+.+.+.++|+.|+|++|.+...+. ..+.+++.|++|++++|+++ .+|..+..+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa------s~~~kle~LeeL~LSGNkL~-~Lp~tva~~- 429 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA------SKLRKLEELEELNLSGNKLT-TLPDTVANL- 429 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH------HHHhchHHhHHHhcccchhh-hhhHHHHhh-
Confidence 3467788899999998888888999999999999999987776 67889999999999999999 899888885
Q ss_pred cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc-ccCchhhcCCCCCCEEEccCCc
Q 040495 369 STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT-GTIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
+.|+.|...+|++. .+| .+..+++|+.+|++.|+++ +.+|... ..++|++||+++|.
T Consensus 430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 78999999999998 788 7899999999999999987 3344433 33899999999996
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=5.9e-24 Score=230.26 Aligned_cols=287 Identities=18% Similarity=0.187 Sum_probs=168.2
Q ss_pred CccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEc
Q 040495 122 NMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDV 201 (443)
Q Consensus 122 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 201 (443)
.+|++|++.+|.+. .+|..+..+++|++++++++.....+|. +..+++|++|++++|.....+|..+.++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 44444455444444 3444444445555555544433223332 444445555555544433344444445555555555
Q ss_pred cCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcC---
Q 040495 202 RENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNF--- 278 (443)
Q Consensus 202 ~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l--- 278 (443)
++|......+.-..+++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|++|.+.++..
T Consensus 689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 689 SRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhc
Confidence 44422221211113444555555544333333321 234455555555543 444332 244555555544221
Q ss_pred ----CccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCC
Q 040495 279 ----TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354 (443)
Q Consensus 279 ----~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 354 (443)
....+.....+++|+.|++++|...+.+|..++++++|+.|++++|......|. .. ++++|+.|++++|
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------GI-NLESLESLDLSGC 835 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------CC-CccccCEEECCCC
Confidence 101111122346788889988888778888899999999999988754444442 12 6788999999988
Q ss_pred cCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCc
Q 040495 355 RFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 355 ~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
.....+|.. .++++.|+|++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 836 ~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 836 SRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred Ccccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 655455542 367899999999998 789999999999999999965555788888888999999998884
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=7.4e-24 Score=229.52 Aligned_cols=346 Identities=18% Similarity=0.192 Sum_probs=268.5
Q ss_pred CcEEEEEcCCCCCcc--cccccccCCCCCCEEeCCCCcC------CCCCchhhcCCC-ccCeEEccCCCCCCCCChhhhc
Q 040495 74 QRVTRLDLRNQSIGG--PLSPYVGNLSFLRYINLANNGF------LGEIPPQIGRLN-MLEGLVLSNNSFSGTIPTNLSR 144 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~l~~ 144 (443)
.+|+.+.+.-..+.. ..+..|.++++|+.|.++.+.. ...+|..+..++ +|+.|++.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456655554433322 2345688999999999976542 335677777764 6999999999887 778877 5
Q ss_pred CCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcC-CcccccccCCCCCCEEE
Q 040495 145 RSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL-WGRIDSLVQLRNLRLLD 223 (443)
Q Consensus 145 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~l~~l~~L~~L~ 223 (443)
..+|++|++.++.+. .+|..+..+++|+.++++++.....+| .+..+++|+.|++.+|.. ...+..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 689999999999987 788888899999999999886555666 478899999999999854 44447788999999999
Q ss_pred cccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcC-
Q 040495 224 IAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF- 302 (443)
Q Consensus 224 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l- 302 (443)
+++|..-..+|..+ ++++|+.|++++|...+.+|. ...+|+.|++++|.+. .+|..+ .+++|++|.+.++..
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 99987666777765 789999999999976666664 3568999999999987 677655 578889888877432
Q ss_pred ------ccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEec
Q 040495 303 ------SGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAM 376 (443)
Q Consensus 303 ------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L 376 (443)
....+......++|+.|++++|......| ..+.++++|+.|++++|...+.+|..+ . .++|+.|++
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-L~sL~~L~L 832 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------SSIQNLHKLEHLEIENCINLETLPTGI-N-LESLESLDL 832 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccC------hhhhCCCCCCEEECCCCCCcCeeCCCC-C-ccccCEEEC
Confidence 11122223445789999999998777777 668899999999999986555888766 3 489999999
Q ss_pred cCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCC
Q 040495 377 GRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 377 ~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 442 (443)
++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++|+--..+|..+.+++.
T Consensus 833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 833 SGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred CCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 998765566643 368999999999998 79999999999999999996544467776655543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=4.2e-27 Score=231.40 Aligned_cols=347 Identities=25% Similarity=0.345 Sum_probs=229.5
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 154 (443)
.++.|+++.|.+-...-+.+.+.-+|+.|++++|.+. ..|..+..+.+|+.|.++.|.+. ..|.....+.+|+++.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 4778888887765433344555556999999999876 88888999999999999999998 788889999999999999
Q ss_pred CCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCC-------------------cCCccc-cccc
Q 040495 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-------------------ILWGRI-DSLV 214 (443)
Q Consensus 155 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-------------------~l~~~~-~~l~ 214 (443)
+|.+. ..|..+..+.+|++|+++.|.+. .+|..+..++.+..+..++| .+.+.+ ..+.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~ 177 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY 177 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh
Confidence 99988 89999999999999999999998 66765555555444444444 222222 1112
Q ss_pred CCCCCCEEEcccccCCCCCCcccc-----------------CCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCc
Q 040495 215 QLRNLRLLDIAFNHFSGMIPPPIF-----------------NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 277 (443)
.+.. .+++++|.+....-..+. .-++|+.|+.+.|.++...+.. -..+|+.+++++|+
T Consensus 178 ~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 178 NLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNN 252 (1081)
T ss_pred hhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccc---ccccceeeecchhh
Confidence 2222 255555544311000000 0122333333333332111100 12344444444444
Q ss_pred CCccCCccCcCCCCCCEEecccCcCcc----------------------ccchhhhCCCCCCEEEccCCCCcccCCCch-
Q 040495 278 FTGSIPVSLSNASRLEMIEFSRNQFSG----------------------RVSVDFSRLKNLSFLNMGINNLGTRTANEL- 334 (443)
Q Consensus 278 l~~~~~~~l~~~~~L~~L~l~~n~l~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 334 (443)
++ .+|.+++.+.+|+.++..+|.+.. -+|....++++|+.|++..|++....+..+
T Consensus 253 l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 253 LS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred hh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh
Confidence 44 333444444444444444444321 233334445666666666666544333110
Q ss_pred ------------------------------------------hhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCC
Q 040495 335 ------------------------------------------DFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK 372 (443)
Q Consensus 335 ------------------------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~ 372 (443)
.....+.+.++|+.|+|++|++. .+|+....-.+.|+
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELE 410 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhH
Confidence 01145778899999999999998 78876655558899
Q ss_pred EEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc-cCCc
Q 040495 373 QIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG-SIPS 435 (443)
Q Consensus 373 ~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~ 435 (443)
.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.+++.|+.+|+|.|.++. .+|.
T Consensus 411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred HHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence 9999999999 89999999999999999999998 888 68889999999999999873 4443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=3.8e-23 Score=209.16 Aligned_cols=264 Identities=26% Similarity=0.289 Sum_probs=158.5
Q ss_pred ccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc
Q 040495 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 202 (443)
.-..|+++++.++ .+|+.+. ++|+.|++.+|+++ .+|.. .++|++|++++|+++ .+|.. .++|+.|++.
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 3556677777666 5666554 36677777777666 45532 356777777777666 34432 3466667777
Q ss_pred CCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccC
Q 040495 203 ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSI 282 (443)
Q Consensus 203 ~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 282 (443)
+|.+...+.. ..+|+.|++++|++. .+|. ..++|+.|++++|.++ .+|. ....|+.|++++|+++ .+
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT-SL 337 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCC----CcccccccccccCccc-cc
Confidence 6666543321 245666777777665 2333 2356777777777766 4443 1235666777777766 34
Q ss_pred CccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh
Q 040495 283 PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 283 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (443)
|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.++.... ...+|+.|++++|+++ .+|.
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~----------l~~~L~~LdLs~N~Lt-~LP~ 399 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLT-SLPV 399 (788)
T ss_pred ccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc----------cccccceEEecCCccc-CCCC
Confidence 431 2466777777777764 3331 2456666777776664321 1245677777777776 4553
Q ss_pred hHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccc
Q 040495 363 SMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSL 437 (443)
Q Consensus 363 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 437 (443)
. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|+.+.++++|+.|++++|+++|.+|..+
T Consensus 400 l----~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 400 L----PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred c----ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2 246777777777776 355432 34666777777776 677777777777777777777777666655
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=1e-22 Score=206.04 Aligned_cols=264 Identities=23% Similarity=0.286 Sum_probs=212.7
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIF 178 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 178 (443)
.-..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|. .+++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 4678999999998 7888775 47999999999998 5665 3588999999999998 56643 4689999999
Q ss_pred ccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCC
Q 040495 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLP 258 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 258 (443)
+|.++ .+|.. ..+|+.|++++|.+...+. ..++|+.|++++|++.+ +|.. ..+|+.|++++|.++ .+|
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccc
Confidence 99987 45543 3578899999998886553 24789999999999985 4442 246888999999998 677
Q ss_pred hhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHh
Q 040495 259 VDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFIN 338 (443)
Q Consensus 259 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 338 (443)
. ...+|++|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.++..+.
T Consensus 339 ~----lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~------- 399 (788)
T PRK15387 339 T----LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPV------- 399 (788)
T ss_pred c----cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCC-------
Confidence 4 2358999999999998 45653 3578899999999985 5542 3579999999999986443
Q ss_pred hhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhh
Q 040495 339 LLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVI 413 (443)
Q Consensus 339 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~ 413 (443)
..++|+.|++++|+++ .+|.. +.+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..|..+
T Consensus 400 ---l~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 400 ---LPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ---cccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 1368999999999998 57753 256889999999999 799999999999999999999999988876
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.88 E-value=1.8e-21 Score=198.21 Aligned_cols=339 Identities=18% Similarity=0.281 Sum_probs=204.4
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCCCCC----CCCCCCCCCCCccc----------------eeeCCCCCcEEEEEcCCCC
Q 040495 26 ICANSNETDRLALLAIKLQLHDPLGVT----SSWNNSMSLCQWTG----------------VTCGRRHQRVTRLDLRNQS 85 (443)
Q Consensus 26 ~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~w~~~~~~c~w~g----------------v~c~~~~~~v~~L~l~~~~ 85 (443)
.+....+.+...+.+....+..|. +. ..|+...+.|.-.. |.|.. +.|+.+..-+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~ 132 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESE 132 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccc
Confidence 345677888999999999998774 33 34888888886433 44543 455555554422
Q ss_pred Cccccc--ccccCCCCCCEEeCCCCcCCCCC---chhh-----cCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccC
Q 040495 86 IGGPLS--PYVGNLSFLRYINLANNGFLGEI---PPQI-----GRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155 (443)
Q Consensus 86 ~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~---~~~l-----~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 155 (443)
...... ....+..... =+-..+...+.- ..++ +-..+...|+++++.++ .+|..+. +.|+.|++++
T Consensus 133 ~~~~~~~~~~~~~~~~~w-~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~ 208 (754)
T PRK15370 133 QASSASGSKDAVNYELIW-SEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDN 208 (754)
T ss_pred ccccCCCCCChhhHHHHH-HHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecC
Confidence 111100 0000000000 000000000000 0001 11134566777777766 4565443 4677777777
Q ss_pred CcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCc
Q 040495 156 NYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 156 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
|.++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++++|.+...+..+. .+|+.|++++|.+. .+|.
T Consensus 209 N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~ 279 (754)
T PRK15370 209 NELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPE 279 (754)
T ss_pred CCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-cccc
Confidence 7776 5565443 46777777777776 4555443 367777777777665443332 46778888887777 4565
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.+++ +|..+. ++
T Consensus 280 ~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~s 347 (754)
T PRK15370 280 NLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PE 347 (754)
T ss_pred ccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--Cc
Confidence 443 47888888888877 5664432 46778888888877 345433 2578888888888775 454442 67
Q ss_pred CCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhh----hc
Q 040495 316 LSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI----RS 391 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l----~~ 391 (443)
|+.|++++|+++..+. .+ .++|++|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+ ..
T Consensus 348 L~~L~Ls~N~L~~LP~-------~l--p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~ 413 (754)
T PRK15370 348 LQVLDVSKNQITVLPE-------TL--PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGE 413 (754)
T ss_pred ccEEECCCCCCCcCCh-------hh--cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhc
Confidence 8888888888774322 12 257888888888888 6776653 35888888888887 555443 34
Q ss_pred CCCCCeEeCcCCcCc
Q 040495 392 HANLNWLTMDSNLFT 406 (443)
Q Consensus 392 ~~~L~~L~L~~n~~~ 406 (443)
.+++..+++.+|+++
T Consensus 414 ~~~l~~L~L~~Npls 428 (754)
T PRK15370 414 GPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCccEEEeeCCCcc
Confidence 577788888888886
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=8.9e-24 Score=189.84 Aligned_cols=252 Identities=19% Similarity=0.195 Sum_probs=165.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccC-CCCCCCCChhhhcCCCCceee
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSN-NSFSGTIPTNLSRRSNLIELS 152 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~l~~l~~L~~L~ 152 (443)
...+.|+|..|+++...+.+|..++.||.|||++|.|+..-|++|..+++|..|-+.+ |+|+...-..|.+|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4678899999999887788899999999999999999888899999998887776554 888855556788899999999
Q ss_pred ccCCcccccCCccccCCcCccEeeeeccccCccCCc-cccCCCCCCEEEccCCcCCccc-------------ccccCCCC
Q 040495 153 VDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA-SIGNLSSLLAFDVRENILWGRI-------------DSLVQLRN 218 (443)
Q Consensus 153 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~-------------~~l~~l~~ 218 (443)
+.-|++.-...+.|..++++..|.+.+|.+. .++. .+..+..++.+.+..|.+...- ..++....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 8888888666777888899999999998887 3443 6777777887777666421100 01111111
Q ss_pred CCEEEcccccC-------------------------CCCCC-ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEe
Q 040495 219 LRLLDIAFNHF-------------------------SGMIP-PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLS 272 (443)
Q Consensus 219 L~~L~l~~n~~-------------------------~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 272 (443)
..-..+.+..+ .+.-| ..|..+++|++|++++|.++ .+....|.....+++|.
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELY 304 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhh
Confidence 11111111111 11111 23455666666666666665 44444555566666666
Q ss_pred CCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCc
Q 040495 273 PNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327 (443)
Q Consensus 273 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
|..|++...-...|.++..|+.|++.+|+|+...|..|..+..|.+|++-.|.+.
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 6666665444445566666666666666666666666666666666666655543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2.5e-20 Score=189.98 Aligned_cols=246 Identities=23% Similarity=0.364 Sum_probs=147.9
Q ss_pred CCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEccc
Q 040495 147 NLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAF 226 (443)
Q Consensus 147 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~ 226 (443)
+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..+. ++|+.|++++|.+...+..+. ++|+.|++++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 4566777766666 4555442 45777777777776 4555443 467777777776665443222 3577777777
Q ss_pred ccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcccc
Q 040495 227 NHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306 (443)
Q Consensus 227 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 306 (443)
|.+. .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence 7766 4555443 36777777777776 5665432 46777777777766 3444332 356677777777664 3
Q ss_pred chhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCc
Q 040495 307 SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP 386 (443)
Q Consensus 307 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p 386 (443)
|..+ .++|+.|++++|.++.... .+ .++|+.|++++|+++ .+|..+ +++|+.|++++|+++ .+|
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~LP~-------~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP 383 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSLPA-------SL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLP 383 (754)
T ss_pred Cccc--cccceeccccCCccccCCh-------hh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCC
Confidence 3322 2567777777777665322 12 256777777777776 566544 256777777777776 456
Q ss_pred hhhhcCCCCCeEeCcCCcCcccCchhh----cCCCCCCEEEccCCcCc
Q 040495 387 PGIRSHANLNWLTMDSNLFTGTIPPVI----GELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 387 ~~l~~~~~L~~L~L~~n~~~~~~p~~~----~~l~~L~~L~l~~n~l~ 430 (443)
..+. ..|+.|++++|++. .+|+.+ ..++.+..|++.+|+++
T Consensus 384 ~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5544 25667777777766 444433 33466677777777664
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=5.4e-23 Score=184.86 Aligned_cols=333 Identities=24% Similarity=0.265 Sum_probs=247.9
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccC-CcccccCCccccCCcCccEeee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT-NYLVGEIPSAIGSLFKLERLFI 177 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~l 177 (443)
.-..++|..|.|+...+.+|+.+++|+.|||++|.|+.+-|+.|.++++|.+|-+.+ |+++......|+++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567889999999977788899999999999999999999999999999998887766 8888555567899999999999
Q ss_pred eccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCC------------CCCccccCCC---
Q 040495 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSG------------MIPPPIFNIS--- 241 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~------------~~~~~l~~l~--- 241 (443)
.-|++.-...+.+..++++..|.+..|.+.... ..+..+..++.+++..|.+.. ..|..++...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999998777788999999999999999888777 688888899999998887321 1111111111
Q ss_pred -------------------CCcEE---EcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 242 -------------------SLEVI---SLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 242 -------------------~L~~L---~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
.++.+ ..+.+...+..|..-+..+++|+.+++++|++++.-+.+|....++++|.+..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 11111 11222233456666677899999999999999988899999999999999999
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcc-cCChhHhhh-----------
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG-VLPQSMANF----------- 367 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~----------- 367 (443)
|++.......|.++..|+.|++.+|+|+...| .+|....+|.+|.+-.|++-= ---.|+..+
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~------~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP------GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR 381 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEec------ccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence 99997777889999999999999999999888 678889999999998886531 001111111
Q ss_pred ---ccCCCEEeccCCcCeec---Cchhh------------------hcC-------------CCCCeEeCcCCcCcccCc
Q 040495 368 ---SSTIKQIAMGRNRISGT---IPPGI------------------RSH-------------ANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 368 ---~~~L~~L~L~~n~l~~~---~p~~l------------------~~~-------------~~L~~L~L~~n~~~~~~p 410 (443)
+..++.+++++..+... .|+.. ..+ ..-..+++.+|.++ .+|
T Consensus 382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp 460 (498)
T KOG4237|consen 382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVP 460 (498)
T ss_pred CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccC
Confidence 23455555555433211 11111 011 12357888999998 788
Q ss_pred hhhcCCCCCCEEEccCCcCcccCCccccCCC
Q 040495 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 411 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 441 (443)
.. .+.+| .+|+++|+++-.--..|.+++
T Consensus 461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~t 488 (498)
T KOG4237|consen 461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMT 488 (498)
T ss_pred HH--HHhhh-hcccccCceehhhcccccchh
Confidence 76 55677 899999998743333444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=3.6e-21 Score=181.80 Aligned_cols=284 Identities=19% Similarity=0.229 Sum_probs=175.9
Q ss_pred eEEccCCCCC-CCCChhhhcCCCCceeeccCCccccc----CCccccCCcCccEeeeeccccCccCCccccCCCCCCEEE
Q 040495 126 GLVLSNNSFS-GTIPTNLSRRSNLIELSVDTNYLVGE----IPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFD 200 (443)
Q Consensus 126 ~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 200 (443)
.|+|.++.++ ...+..+..+.+|++++++++.++.. ++..+...+.+++++++++.+.+ .+..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~--------- 71 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQ--------- 71 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHH---------
Confidence 4667777776 33455566677788888888777432 34445556667777777665542 111000
Q ss_pred ccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCC---CCcEEEcccCcCccc----CChhhhcCC-CCCcEEe
Q 040495 201 VRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNIS---SLEVISLSENRFTGS----LPVDAGVNL-PNLRQLS 272 (443)
Q Consensus 201 l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~---~L~~L~l~~n~l~~~----~~~~~~~~~-~~L~~L~ 272 (443)
.....+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+++. +...+. .+ ++|++|+
T Consensus 72 -------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~ 143 (319)
T cd00116 72 -------SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLV 143 (319)
T ss_pred -------HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEE
Confidence 0002233345555555555555433333333333 366666666665521 111222 34 6777777
Q ss_pred CCCCcCCcc----CCccCcCCCCCCEEecccCcCccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCC
Q 040495 273 PNGNNFTGS----IPVSLSNASRLEMIEFSRNQFSGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344 (443)
Q Consensus 273 L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 344 (443)
+++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.... .+...+..++
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~~~~~~ 221 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS--ALAETLASLK 221 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH--HHHHHhcccC
Confidence 777777632 334456667788888888887743 233455667888888888887654332 1224567788
Q ss_pred CCCEEEccCCcCcccCChhHhhhc----cCCCEEeccCCcCee----cCchhhhcCCCCCeEeCcCCcCccc----Cchh
Q 040495 345 KLERLYFNRNRFQGVLPQSMANFS----STIKQIAMGRNRISG----TIPPGIRSHANLNWLTMDSNLFTGT----IPPV 412 (443)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~~~~~~~----~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~L~~n~~~~~----~p~~ 412 (443)
+|++|++++|++++.....+.... +.|+.|++++|.+++ .+...+..+++|+++++++|.++.. +...
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 899999999988864444443322 689999999998873 2445666778899999999999844 4444
Q ss_pred hcCC-CCCCEEEccCCcC
Q 040495 413 IGEL-KNLQLLDLGGNFL 429 (443)
Q Consensus 413 ~~~l-~~L~~L~l~~n~l 429 (443)
+... +.|+++++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4444 7889999988864
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=8.8e-21 Score=179.17 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=31.7
Q ss_pred EEcCCCCCc-ccccccccCCCCCCEEeCCCCcCCCC----CchhhcCCCccCeEEccCCCCC
Q 040495 79 LDLRNQSIG-GPLSPYVGNLSFLRYINLANNGFLGE----IPPQIGRLNMLEGLVLSNNSFS 135 (443)
Q Consensus 79 L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 135 (443)
|+|..+.+. +.+...+..++.|++|+++++.++.. ++..+...+.+++++++++.+.
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 555555555 23444455556677777776666432 3444455555666666665554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.8e-19 Score=144.50 Aligned_cols=159 Identities=32% Similarity=0.532 Sum_probs=84.1
Q ss_pred ccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc
Q 040495 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 202 (443)
.++.|.+++|.++ .+|+.+..+.+|+.|++.+|+++ .+|.+++.+++|+.|+++-|++. ..|+.|+.++.|+.||+.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 3334444444444 33444444444444444444444 44444444555555555544444 445555554444444444
Q ss_pred CCcCCccc--ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCc
Q 040495 203 ENILWGRI--DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 203 ~n~l~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 280 (443)
+|.+.... ..|..+..|+.|++++|+|. .+|..++++++|+.|.+.+|.+. ++|.+++ .+..|++|.+.+|+++
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQGNRLT- 186 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhcccceee-
Confidence 44443322 33444556666666666665 55666666666666666666665 6666666 5666666666666665
Q ss_pred cCCccCcC
Q 040495 281 SIPVSLSN 288 (443)
Q Consensus 281 ~~~~~l~~ 288 (443)
.+|..+++
T Consensus 187 vlppel~~ 194 (264)
T KOG0617|consen 187 VLPPELAN 194 (264)
T ss_pred ecChhhhh
Confidence 45544443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3.4e-19 Score=142.88 Aligned_cols=164 Identities=29% Similarity=0.516 Sum_probs=106.9
Q ss_pred CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCC
Q 040495 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANC 343 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 343 (443)
++.+++.|.+++|+++ .+|..++.+.+|+.|++++|++. ..|.+++.+++|+.|+++-|.+...+ ..|+.+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lp-------rgfgs~ 101 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILP-------RGFGSF 101 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCc-------cccCCC
Confidence 3455556666666665 55555666666666666666665 45555666666666666666554432 346666
Q ss_pred CCCCEEEccCCcCcc-cCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEE
Q 040495 344 SKLERLYFNRNRFQG-VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLL 422 (443)
Q Consensus 344 ~~L~~L~l~~n~l~~-~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 422 (443)
+-|+.||+.+|++.. .+|..++.+ ..|+.|.|++|.|. .+|..++++++|+.|.+++|.+. ++|..++.++.|++|
T Consensus 102 p~levldltynnl~e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred chhhhhhccccccccccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 666666666666643 345555553 56777777777776 67777777777777777777776 677777777777777
Q ss_pred EccCCcCcccCCccccCC
Q 040495 423 DLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 423 ~l~~n~l~~~~p~~~~~l 440 (443)
.+.+|+++ .+|..++++
T Consensus 179 hiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELANL 195 (264)
T ss_pred hcccceee-ecChhhhhh
Confidence 77777776 666666554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=3.7e-15 Score=151.53 Aligned_cols=152 Identities=32% Similarity=0.522 Sum_probs=127.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC-----CccceeeCCC--C--CcEEEEEcCCCCCcccccccccCCC
Q 040495 28 ANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLC-----QWTGVTCGRR--H--QRVTRLDLRNQSIGGPLSPYVGNLS 98 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~--~--~~v~~L~l~~~~~~~~~~~~~~~l~ 98 (443)
..+.+.|..||.++|..+.++.. .+|.. ++| .|.|+.|... . .+|+.|+|+++.+.|.+|..+..++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 34567889999999999876532 47964 344 6999999532 1 2589999999999999999999999
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCC-cCccEeee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSL-FKLERLFI 177 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l 177 (443)
+|+.|+|++|.+.|.+|..++.+++|+.|++++|.+++.+|..++++++|++|++++|.+++.+|..++.. .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999887653 45677777
Q ss_pred eccccC
Q 040495 178 FHNHIT 183 (443)
Q Consensus 178 ~~n~l~ 183 (443)
.+|...
T Consensus 523 ~~N~~l 528 (623)
T PLN03150 523 TDNAGL 528 (623)
T ss_pred cCCccc
Confidence 777543
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=5.9e-12 Score=122.44 Aligned_cols=196 Identities=34% Similarity=0.430 Sum_probs=102.2
Q ss_pred eEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCc-CccEeeeeccccCccCCccccCCCCCCEEEccCC
Q 040495 126 GLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLF-KLERLFIFHNHITGQLPASIGNLSSLLAFDVREN 204 (443)
Q Consensus 126 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 204 (443)
.++...+.+. ..+..+..++.++.|++.+|.++ .+|....... +|+.|++++|.+. .+|..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666654 22333445566777777777776 5555555553 6777777777766 44445566666666666666
Q ss_pred cCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCc
Q 040495 205 ILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPV 284 (443)
Q Consensus 205 ~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 284 (443)
.+.......+..++|+.|++++|++. .+|........|+++.+++|.+. ..+..+. ++.++..+.+.+|++. ..+.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceee-eccc
Confidence 65554444334555555555555554 33333333344555555555322 2332232 4444555555555443 2234
Q ss_pred cCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccC
Q 040495 285 SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT 330 (443)
Q Consensus 285 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
.++.++.++.|++++|.++.... ++...+++.|++++|.+....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 44444455555555555543222 444445555555554444433
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=6.8e-12 Score=122.02 Aligned_cols=178 Identities=29% Similarity=0.477 Sum_probs=88.0
Q ss_pred CCCcEEEcccCcCcccCChhhhcCCC-CCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEE
Q 040495 241 SSLEVISLSENRFTGSLPVDAGVNLP-NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFL 319 (443)
Q Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
+.++.+++.+|.++ .++.... ... +|+.|++++|.+. .+|..+..++.|+.|++++|++.. ++...+..+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence 44555555555554 4444333 232 5555555555554 333444555555555555555552 23223345555555
Q ss_pred EccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEe
Q 040495 320 NMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLT 399 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 399 (443)
++++|.+....+. ......|+++.+++|++. ..+..+... .++..+.+.+|++. .++..++.++++++|+
T Consensus 192 ~ls~N~i~~l~~~-------~~~~~~L~~l~~~~N~~~-~~~~~~~~~-~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 192 DLSGNKISDLPPE-------IELLSALEELDLSNNSII-ELLSSLSNL-KNLSGLELSNNKLE-DLPESIGNLSNLETLD 261 (394)
T ss_pred eccCCccccCchh-------hhhhhhhhhhhhcCCcce-ecchhhhhc-ccccccccCCceee-eccchhccccccceec
Confidence 5555555544331 122333555555555433 333334332 44555555555555 2244555555566666
Q ss_pred CcCCcCcccCchhhcCCCCCCEEEccCCcCcccCC
Q 040495 400 MDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 400 L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
+++|.++ .++. +....+++.|++++|.++...|
T Consensus 262 ~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 262 LSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 6666665 3333 5555666666666665554433
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=1.9e-12 Score=115.87 Aligned_cols=251 Identities=17% Similarity=0.212 Sum_probs=120.0
Q ss_pred cccCCcCccEeeeeccccCcc----CCccccCCCCCCEEEccCCcCCccc-----------ccccCCCCCCEEEcccccC
Q 040495 165 AIGSLFKLERLFIFHNHITGQ----LPASIGNLSSLLAFDVRENILWGRI-----------DSLVQLRNLRLLDIAFNHF 229 (443)
Q Consensus 165 ~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----------~~l~~l~~L~~L~l~~n~~ 229 (443)
.+..+..++++++++|.+... +...+.+.+.|+..+++.-...... +.+...++|++++||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345567788888888887633 2334556677777777654221110 2344556788888888877
Q ss_pred CCCCCcc----ccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccc
Q 040495 230 SGMIPPP----IFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 230 ~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
....++. +.++..|++|.|.+|.+.-.-...++. .|.++. .-.-.+.-+.|+++...+|.+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA---------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence 6554433 335667777777777664111111110 000000 001112233445555555544321
Q ss_pred c----chhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhh---hccCCCEEeccC
Q 040495 306 V----SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN---FSSTIKQIAMGR 378 (443)
Q Consensus 306 ~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~---~~~~L~~L~L~~ 378 (443)
. ...|...+.|+.+.++.|.+..... ......+..|++|+.|||.+|.|+-.....+.. .++.|+.|++++
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 1 1123344555555555554433222 112234555555555555555554322222111 123455555555
Q ss_pred CcCeecCchhh-----hcCCCCCeEeCcCCcCccc----CchhhcCCCCCCEEEccCCcC
Q 040495 379 NRISGTIPPGI-----RSHANLNWLTMDSNLFTGT----IPPVIGELKNLQLLDLGGNFL 429 (443)
Q Consensus 379 n~l~~~~p~~l-----~~~~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l 429 (443)
|.+...-...+ ...++|+.+.+.+|.++.. +-.++...+.|..|+|++|++
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 55544322221 2245566666666655511 222334455666666666665
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.7e-13 Score=129.58 Aligned_cols=192 Identities=23% Similarity=0.375 Sum_probs=132.7
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEec
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
.-...|++.|.+. .+|..+..+..|+.+.++.|.+. .+|..+. ++..|+.++++.|+++ ..|..+..++ |+.|.+
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 3444566666665 56666666666777777777666 6666666 6777777777777776 5566666553 677777
Q ss_pred ccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEecc
Q 040495 298 SRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMG 377 (443)
Q Consensus 298 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~ 377 (443)
++|+++ .+|..++..+.|..||.+.|.+....+ .++++.+|+.|.+..|++. .+|+.+..+ .|..||++
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slps-------ql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi~lDfS 219 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPS-------QLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLIRLDFS 219 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhhhchH-------HhhhHHHHHHHHHhhhhhh-hCCHHHhCC--ceeeeecc
Confidence 777776 455566677777777777777665543 3667777888888888877 677777754 47888888
Q ss_pred CCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCC---CCCCEEEccCC
Q 040495 378 RNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL---KNLQLLDLGGN 427 (443)
Q Consensus 378 ~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l---~~L~~L~l~~n 427 (443)
+|+++ .+|.+|..++.|++|-|.+|.+. +-|..++.. .-.++|+..-+
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88888 78888888888888888888887 555555432 33456666665
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=7.9e-13 Score=118.23 Aligned_cols=251 Identities=14% Similarity=0.202 Sum_probs=156.1
Q ss_pred hhhcCCCCceeeccCCccccc----CCccccCCcCccEeeeeccccC---ccCCc-------cccCCCCCCEEEccCCcC
Q 040495 141 NLSRRSNLIELSVDTNYLVGE----IPSAIGSLFKLERLFIFHNHIT---GQLPA-------SIGNLSSLLAFDVRENIL 206 (443)
Q Consensus 141 ~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~---~~~~~-------~l~~l~~L~~L~l~~n~l 206 (443)
.+.....++.+++++|.+... +...+.+.++|+..++++-... ..+|. .+..+++|++++|+.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345678899999999998643 3345667788999988764221 23333 345678999999999976
Q ss_pred Cccc-----ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCcc
Q 040495 207 WGRI-----DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGS 281 (443)
Q Consensus 207 ~~~~-----~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 281 (443)
.... .-+.++..|++|++.+|.+...-...++. .|.+|. .+. .++ ..+.|+++....|++...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k---k~~-----~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK---KAA-----SKPKLRVFICGRNRLENG 172 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh---ccC-----CCcceEEEEeeccccccc
Confidence 5332 45567899999999999886322222111 111111 010 111 334556666655555321
Q ss_pred ----CCccCcCCCCCCEEecccCcCccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccC
Q 040495 282 ----IPVSLSNASRLEMIEFSRNQFSGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNR 353 (443)
Q Consensus 282 ----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 353 (443)
+...+...+.|+.+.+..|.+... ....+..+++|+.|||.+|.++..... .+...++.+++|++|++++
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--ALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH--HHHHHhcccchheeecccc
Confidence 122344456666666666665421 223456777777777777776654332 2225677777888888888
Q ss_pred CcCcccCChhHhh----hccCCCEEeccCCcCeec----CchhhhcCCCCCeEeCcCCcC
Q 040495 354 NRFQGVLPQSMAN----FSSTIKQIAMGRNRISGT----IPPGIRSHANLNWLTMDSNLF 405 (443)
Q Consensus 354 n~l~~~~p~~~~~----~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~n~~ 405 (443)
|.+.......+.. ..|.|+.+.+.+|.++-. +..++...+.|+.|+|++|.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8877555444332 246788888888877643 334456677888888888888
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=4.8e-13 Score=126.58 Aligned_cols=170 Identities=31% Similarity=0.386 Sum_probs=98.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCC
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 156 (443)
+..|++.|++. ++|..+..|..|+.+.++.|.+. .+|..++++..|++++++.|+++ .+|..++.|+ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34455555543 34555555556666666666555 55556666666666666666665 5555555543 556666666
Q ss_pred cccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCcc
Q 040495 157 YLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPP 236 (443)
Q Consensus 157 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.+.+..|.+...+..+..+ .|..||+++|++. .+|-.
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 655 55555665566666666666655 45555666666666666666555555444433 3555666666655 45666
Q ss_pred ccCCCCCcEEEcccCcCc
Q 040495 237 IFNISSLEVISLSENRFT 254 (443)
Q Consensus 237 l~~l~~L~~L~l~~n~l~ 254 (443)
|.+++.|++|.|.+|.++
T Consensus 230 fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhheeeeeccCCCC
Confidence 666666666666666655
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=2.2e-11 Score=102.21 Aligned_cols=123 Identities=21% Similarity=0.320 Sum_probs=37.5
Q ss_pred CCCCEEecccCcCccccchhhh-CCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc
Q 040495 290 SRLEMIEFSRNQFSGRVSVDFS-RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (443)
.++++|++.+|.++.. +.++ .+.+|+.|++++|.++.... +..++.|++|++++|+++ .+...+...+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~~--------l~~L~~L~~L~L~~N~I~-~i~~~l~~~l 87 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLEG--------LPGLPRLKTLDLSNNRIS-SISEGLDKNL 87 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------------TT--EEE--SS----S-CHHHHHH-
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccccC--------ccChhhhhhcccCCCCCC-ccccchHHhC
Confidence 3445555555555422 1233 34555555555555554432 455566666666666666 4444333223
Q ss_pred cCCCEEeccCCcCeec-CchhhhcCCCCCeEeCcCCcCcccCch----hhcCCCCCCEEEc
Q 040495 369 STIKQIAMGRNRISGT-IPPGIRSHANLNWLTMDSNLFTGTIPP----VIGELKNLQLLDL 424 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~L~~n~~~~~~p~----~~~~l~~L~~L~l 424 (443)
++|+.|++++|++... --..++.+++|+.|+|.+|+++.. +. .+..+|+|+.||-
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 5666666666666532 113456666777777777766622 22 4455677777664
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.8e-12 Score=117.01 Aligned_cols=167 Identities=18% Similarity=0.207 Sum_probs=73.1
Q ss_pred cCCCCCCEEEccCCcCCccc---ccccCCCCCCEEEcccccCCCCCCccc-cCCCCCcEEEcccCcCcccCChhhhcCCC
Q 040495 191 GNLSSLLAFDVRENILWGRI---DSLVQLRNLRLLDIAFNHFSGMIPPPI-FNISSLEVISLSENRFTGSLPVDAGVNLP 266 (443)
Q Consensus 191 ~~l~~L~~L~l~~n~l~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 266 (443)
..|++++.|+++.|-+.... .....+|+|+.|+++.|.+........ ..++.|+.|.++.|+++-.--..+...+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34445555555554443322 333445555555555555432211111 13445555555555554211112222455
Q ss_pred CCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcccc-chhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCC
Q 040495 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSK 345 (443)
Q Consensus 267 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 345 (443)
+|+.|++..|.....-......+..|++|+|++|++-... ....+.++.|..|+++.+.+......+.+.......+++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 5555555555311122222333445555555555544321 122345555555555555554433322222222344455
Q ss_pred CCEEEccCCcCc
Q 040495 346 LERLYFNRNRFQ 357 (443)
Q Consensus 346 L~~L~l~~n~l~ 357 (443)
|++|++.+|++.
T Consensus 303 L~~L~i~~N~I~ 314 (505)
T KOG3207|consen 303 LEYLNISENNIR 314 (505)
T ss_pred ceeeecccCccc
Confidence 555555555554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=1.4e-11 Score=108.12 Aligned_cols=132 Identities=24% Similarity=0.287 Sum_probs=89.6
Q ss_pred cCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhh
Q 040495 287 SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN 366 (443)
Q Consensus 287 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (443)
.....|+++|+++|.++ .+.+++.-.|.++.|++++|.+..... +..+++|+.||+++|.++ .+-.|-..
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--------La~L~~L~~LDLS~N~Ls-~~~Gwh~K 350 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--------LAELPQLQLLDLSGNLLA-ECVGWHLK 350 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--------hhhcccceEeecccchhH-hhhhhHhh
Confidence 33456777777777776 344556667777888888777765432 666777888888888776 44444444
Q ss_pred hccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCccc-CchhhcCCCCCCEEEccCCcCcc
Q 040495 367 FSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGT-IPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 367 ~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
+ -+++.|.|++|.+.. + ..++.+-+|+.||+++|+|... -...++++|-|+.+.+.+|++.+
T Consensus 351 L-GNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 351 L-GNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred h-cCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 3 567788888887652 2 4567777788888888877621 12357778888888888888763
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.1e-12 Score=116.21 Aligned_cols=208 Identities=20% Similarity=0.231 Sum_probs=144.5
Q ss_pred CCCCCEEEccCCcCCccc--ccccCCCCCCEEEcccccCCCCCC--ccccCCCCCcEEEcccCcCcccCChhhhcCCCCC
Q 040495 193 LSSLLAFDVRENILWGRI--DSLVQLRNLRLLDIAFNHFSGMIP--PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNL 268 (443)
Q Consensus 193 l~~L~~L~l~~n~l~~~~--~~l~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L 268 (443)
+.+|+.+.+.++...... .....+++++.||++.|-+....+ .....+++|+.|+++.|.+.-.........++++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 334444444443333222 345568999999999998764322 3345789999999999988755554444467899
Q ss_pred cEEeCCCCcCCcc-CCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCC
Q 040495 269 RQLSPNGNNFTGS-IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLE 347 (443)
Q Consensus 269 ~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~ 347 (443)
+.|.++.|+++.. +......+|+|+.|++..|...........-+..|+.|||++|++-..... .....++.|+
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----~~~~~l~~L~ 274 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----YKVGTLPGLN 274 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----cccccccchh
Confidence 9999999998742 334456789999999999964434444456678899999999987665421 4577888999
Q ss_pred EEEccCCcCccc-CChh----HhhhccCCCEEeccCCcCeecCc--hhhhcCCCCCeEeCcCCcCc
Q 040495 348 RLYFNRNRFQGV-LPQS----MANFSSTIKQIAMGRNRISGTIP--PGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 348 ~L~l~~n~l~~~-~p~~----~~~~~~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~L~~n~~~ 406 (443)
.|+++.+.+... +|+. .....++|++|++..|++. .++ ..+..+.+|+.|.+..|.++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 999999988732 2322 1123578999999999986 333 34666778888888888876
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=1.9e-10 Score=117.37 Aligned_cols=113 Identities=20% Similarity=0.392 Sum_probs=92.3
Q ss_pred CCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccC
Q 040495 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSST 370 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 370 (443)
.++.|+|++|.+.|.+|..+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|+++|.+|..+..+ ++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP------~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L-~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP------PSLGSITSLEVLDLSYNSFNGSIPESLGQL-TS 491 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC------hHHhCCCCCCEEECCCCCCCCCCchHHhcC-CC
Confidence 36788888888888888888888899999999988888877 567888889999999999988888888875 78
Q ss_pred CCEEeccCCcCeecCchhhhcC-CCCCeEeCcCCcCcccCc
Q 040495 371 IKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 371 L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~L~~n~~~~~~p 410 (443)
|+.|+|++|+++|.+|..+... .++..+++.+|......|
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 8999999999988888887653 456788888886553343
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=3.2e-11 Score=105.87 Aligned_cols=130 Identities=21% Similarity=0.280 Sum_probs=59.5
Q ss_pred CCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEE
Q 040495 216 LRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMI 295 (443)
Q Consensus 216 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 295 (443)
+..|+++|+++|.++ .+.+++.-.+.++.|+++.|.+. .+.. +. .+++|+.|++++|.++ .+..+-.++-++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 344455555555444 22333334444555555555444 2222 11 3455555555555544 233333344455555
Q ss_pred ecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 296 EFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 296 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
.+++|.+... ..+.++-+|..||+++|++..... ...+++++-|+.+.+.+|++.
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde-----V~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE-----VNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHH-----hcccccccHHHHHhhcCCCcc
Confidence 5555544321 123444455555555555433221 134555555555555555555
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=3.6e-10 Score=94.86 Aligned_cols=110 Identities=24% Similarity=0.287 Sum_probs=30.2
Q ss_pred CCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCE
Q 040495 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSF 318 (443)
Q Consensus 239 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 318 (443)
+..++++|++.+|.++ .+. .+...+.+|+.|++++|.++. ++ .+..+++|++|++++|.++...+.....+++|+.
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3345566666666665 332 222235566666666666652 22 3455666666666666666432221234666666
Q ss_pred EEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 319 LNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 319 L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
|++++|++.....- ..+..+++|++|++.+|+++
T Consensus 93 L~L~~N~I~~l~~l-----~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNEL-----EPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCC-----GGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHh-----HHHHcCCCcceeeccCCccc
Confidence 66666666543221 33555666666666666665
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=5.8e-10 Score=116.38 Aligned_cols=251 Identities=21% Similarity=0.255 Sum_probs=137.9
Q ss_pred CcEEEEEcCCCC--CcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCcee
Q 040495 74 QRVTRLDLRNQS--IGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIEL 151 (443)
Q Consensus 74 ~~v~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 151 (443)
..+++|-+..+. +.....+.|..++.|++|||++|.--+.+|..++++-+|++|+++++.++ .+|..+.++.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 346677777665 33333445777888888888887666678888888888888888888887 788888888888888
Q ss_pred eccCCcccccCCccccCCcCccEeeeeccccC--ccCCccccCCCCCCEEEccCCcCCcccccccCCCCCC----EEEcc
Q 040495 152 SVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT--GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLR----LLDIA 225 (443)
Q Consensus 152 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~----~L~l~ 225 (443)
++..+.....+|.....+++|++|.+...... ...-..+.++.+|+.+....... .....+..+..|. .+.+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhc
Confidence 88877655455665666888888887765422 11112233344444443322211 0001111122221 22222
Q ss_pred cccCCCCCCccccCCCCCcEEEcccCcCcccCChhhh-----cC-CCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 226 FNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG-----VN-LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 226 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
++.. ...+..+..+.+|+.|.+.++.+.. +..... .. ++++..+...++... ..+.+.-..++|+.|.+..
T Consensus 703 ~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 703 GCSK-RTLISSLGSLGNLEELSILDCGISE-IVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred cccc-ceeecccccccCcceEEEEcCCCch-hhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEec
Confidence 2221 1344556677788888888777652 111100 00 122222222222211 1222223456777777777
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCccc
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 329 (443)
+.....+......+..+..+.+..+.+.+.
T Consensus 780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred ccccccCCCHHHHhhhcccEEecccccccc
Confidence 665544444445555555555555554443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=8.6e-10 Score=115.15 Aligned_cols=105 Identities=25% Similarity=0.263 Sum_probs=59.1
Q ss_pred CCCEEeCCCCc--CCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEee
Q 040495 99 FLRYINLANNG--FLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLF 176 (443)
Q Consensus 99 ~L~~L~L~~n~--~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 176 (443)
.|++|-+.+|. +.....+.|..++.|++||+++|.--+.+|..++++-+|++|++++..+. .+|..++++.+|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 46666555554 33223333555666666666655444466666666666666666666655 5666666666666666
Q ss_pred eeccccCccCCccccCCCCCCEEEccCC
Q 040495 177 IFHNHITGQLPASIGNLSSLLAFDVREN 204 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n 204 (443)
+..+.-...+|.....+++|++|.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 6655443334444444566666655443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2.4e-10 Score=111.45 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=50.9
Q ss_pred cCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEE
Q 040495 144 RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLD 223 (443)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 223 (443)
.+..++.+.+..|.+. .+-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.++.. ..+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc-cchhhccchhhhe
Confidence 3445555556555554 222335556666666666666652 222244455555555555554432 2222333355555
Q ss_pred cccccCCCCCCccccCCCCCcEEEcccCcCc
Q 040495 224 IAFNHFSGMIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 224 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 254 (443)
+++|.+... ..+..++.|+.+++++|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhh
Confidence 555554421 22333444455555555444
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.1e-11 Score=103.64 Aligned_cols=230 Identities=18% Similarity=0.143 Sum_probs=129.4
Q ss_pred CccceeeCCCCCcEEEEEcCCCCCcccccccccCCC--CCCEEeCCCCcCCCC-CchhhcCC-CccCeEEccCCCCCCC-
Q 040495 63 QWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLS--FLRYINLANNGFLGE-IPPQIGRL-NMLEGLVLSNNSFSGT- 137 (443)
Q Consensus 63 ~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~-~~~~l~~l-~~L~~L~l~~n~~~~~- 137 (443)
.|++..-++ .--+.+|+.+..+. |+.+..+. ....+.+....+... +.+.+.-. ++|++||+++..++..
T Consensus 127 Rfyr~~~de--~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~st 201 (419)
T KOG2120|consen 127 RFYRLASDE--SLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVST 201 (419)
T ss_pred HHhhccccc--cceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHH
Confidence 355555444 45678888887664 33333332 233444443322221 11212111 3588888888877632
Q ss_pred CChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccc-cCccCC-ccccCCCCCCEEEccCCcCCccc--ccc
Q 040495 138 IPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH-ITGQLP-ASIGNLSSLLAFDVRENILWGRI--DSL 213 (443)
Q Consensus 138 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~--~~l 213 (443)
+...++.+.+|+.|.+.++++...+...+++-.+|+.++++.+. ++..-. --+.+++.|..|+++.|.+.... ..+
T Consensus 202 l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V 281 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV 281 (419)
T ss_pred HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH
Confidence 34445678888888888888887777777777888888887753 331111 12457778888888887665444 122
Q ss_pred cC-CCCCCEEEcccccCC---CCCCccccCCCCCcEEEcccCc-CcccCChhhhcCCCCCcEEeCCCCcCCccCCc---c
Q 040495 214 VQ-LRNLRLLDIAFNHFS---GMIPPPIFNISSLEVISLSENR-FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPV---S 285 (443)
Q Consensus 214 ~~-l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~ 285 (443)
.+ -++|+.|+++++.-. ..+..-...+++|.+||++++. ++......++ +++.|+++.++.|.. .+|. .
T Consensus 282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~--i~p~~~~~ 358 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYD--IIPETLLE 358 (419)
T ss_pred hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcC--CChHHeee
Confidence 22 256777777765321 1111222356677777777663 3322222333 667777777766642 2232 2
Q ss_pred CcCCCCCCEEecccC
Q 040495 286 LSNASRLEMIEFSRN 300 (443)
Q Consensus 286 l~~~~~L~~L~l~~n 300 (443)
+...+.|.+|++.++
T Consensus 359 l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGC 373 (419)
T ss_pred eccCcceEEEEeccc
Confidence 445566666666554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=5.2e-09 Score=72.17 Aligned_cols=61 Identities=26% Similarity=0.446 Sum_probs=41.0
Q ss_pred cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcC
Q 040495 369 STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFL 429 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
|+|++|++++|+++..-+..+..+++|++|++++|.+...-|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777644445666777777777777777655555677777777777777764
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=8.4e-10 Score=107.68 Aligned_cols=250 Identities=25% Similarity=0.281 Sum_probs=142.2
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
.+..++.+++..|.+. .+-..+..+++|+.+++.+|.+. .+...+..+++|++|++++|.++... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 4556666666666665 33334666777777777777776 33333566777777777777776332 24556667777
Q ss_pred eeeccccCccCCccccCCCCCCEEEccCCcCCccccc-ccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCc
Q 040495 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDS-LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 254 (443)
++.+|.++.. ..+..++.|+.+++++|.+...... ...+.+++.+++..|.+.. ...+.....+..+++.+|.++
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence 7777777622 2344466777777777766554432 4566677777777776642 223333444444566666665
Q ss_pred ccCChhhhcCCC--CCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCC
Q 040495 255 GSLPVDAGVNLP--NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTAN 332 (443)
Q Consensus 255 ~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 332 (443)
..-+.. ... +|+.+++.+|++. ..+..+..+..+..+++..|++...-. +...+.+..+....|.+......
T Consensus 222 ~~~~l~---~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 222 KLEGLN---ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eccCcc---cchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhh
Confidence 221111 112 2677777777776 333455666677777777776664322 33445555555555554422110
Q ss_pred chhhHhhhcCCCCCCEEEccCCcCcccCC
Q 040495 333 ELDFINLLANCSKLERLYFNRNRFQGVLP 361 (443)
Q Consensus 333 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 361 (443)
. ........+.++...+..|......+
T Consensus 296 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 296 S--QEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred h--ccccccccccccccccccCccccccc
Confidence 0 00114455666777777776664443
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.3e-08 Score=70.08 Aligned_cols=57 Identities=33% Similarity=0.473 Sum_probs=23.3
Q ss_pred CcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCC
Q 040495 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324 (443)
Q Consensus 268 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 324 (443)
|++|++++|+++...+..|..+++|++|++++|+++...+..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444332333444444444444444444333333444444444444433
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=2.2e-09 Score=105.01 Aligned_cols=128 Identities=22% Similarity=0.283 Sum_probs=86.0
Q ss_pred CCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCC
Q 040495 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSK 345 (443)
Q Consensus 266 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 345 (443)
..|...+.++|.+. .+..++.-++.++.|+|++|+++..- .+..+++|+.||+++|.+....- -...+|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~------l~~~gc~- 233 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQ------LSMVGCK- 233 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccc------cchhhhh-
Confidence 45677777788777 66677777788888888888887433 57778888888888888776544 2233444
Q ss_pred CCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecC-chhhhcCCCCCeEeCcCCcCc
Q 040495 346 LERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI-PPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 346 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~L~~n~~~ 406 (443)
|..|.+++|.++ .+ .++.++ .+|+.||+++|-+.+.- -..+..+..|+.|+|.||++-
T Consensus 234 L~~L~lrnN~l~-tL-~gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALT-TL-RGIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHH-hh-hhHHhh-hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 777788887766 22 234554 67777788877766531 122445566777777777765
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.7e-09 Score=93.90 Aligned_cols=86 Identities=23% Similarity=0.201 Sum_probs=38.4
Q ss_pred CcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCc-Ccccc-chhhhCCCCCCEEE
Q 040495 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ-FSGRV-SVDFSRLKNLSFLN 320 (443)
Q Consensus 243 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~ 320 (443)
|+++|+++..++..--..+..++.+|+.|.+.++++.+.+...+++..+|+.|+++.+. ++..- ...+..++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44455544444422222223344555555555555554444455555555555555432 22111 11234455555555
Q ss_pred ccCCCCcc
Q 040495 321 MGINNLGT 328 (443)
Q Consensus 321 l~~n~l~~ 328 (443)
++.+.+..
T Consensus 267 lsWc~l~~ 274 (419)
T KOG2120|consen 267 LSWCFLFT 274 (419)
T ss_pred chHhhccc
Confidence 55554443
No 46
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.57 E-value=1.1e-07 Score=60.09 Aligned_cols=39 Identities=59% Similarity=1.024 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCC-CCCCCCCCCCCC--CCCCCccceeeC
Q 040495 32 ETDRLALLAIKLQLH-DPLGVTSSWNNS--MSLCQWTGVTCG 70 (443)
Q Consensus 32 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~c~w~gv~c~ 70 (443)
++|++||++||.++. +|.+.+.+|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999999 577889999987 799999999995
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.54 E-value=1.1e-08 Score=79.81 Aligned_cols=87 Identities=24% Similarity=0.356 Sum_probs=46.3
Q ss_pred hcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCC
Q 040495 340 LANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNL 419 (443)
Q Consensus 340 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L 419 (443)
+.....|+..++++|.|. ..|..+...++..+.|++++|+++ .+|..++.++.|+.++++.|.+. ..|+.+..+.+|
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 334444555555555555 445444444445555555555555 45555555555555555555555 455555555555
Q ss_pred CEEEccCCcC
Q 040495 420 QLLDLGGNFL 429 (443)
Q Consensus 420 ~~L~l~~n~l 429 (443)
..||..+|..
T Consensus 126 ~~Lds~~na~ 135 (177)
T KOG4579|consen 126 DMLDSPENAR 135 (177)
T ss_pred HHhcCCCCcc
Confidence 5555555544
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=3.1e-08 Score=87.30 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=38.5
Q ss_pred CCCCcEEeCCCCcCCcc-CCccCcCCCCCCEEecccCcCcccc-chhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcC
Q 040495 265 LPNLRQLSPNGNNFTGS-IPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLAN 342 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 342 (443)
+|++..+.+..|.+... -...+...+.+..|+++.+++...- -.++.+++.|+.|.++++.+.......-...-.++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 45555555555544321 1223334445555555555554321 123455555555555555554433321111122344
Q ss_pred CCCCCEEE
Q 040495 343 CSKLERLY 350 (443)
Q Consensus 343 ~~~L~~L~ 350 (443)
+++++.|+
T Consensus 278 L~~v~vLN 285 (418)
T KOG2982|consen 278 LTKVQVLN 285 (418)
T ss_pred ccceEEec
Confidence 45555544
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.46 E-value=8.1e-08 Score=83.66 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=56.5
Q ss_pred cCCcCccEeeeeccccCccCCcc----ccCCCCCCEEEccCCcCCcc-----------cccccCCCCCCEEEcccccCCC
Q 040495 167 GSLFKLERLFIFHNHITGQLPAS----IGNLSSLLAFDVRENILWGR-----------IDSLVQLRNLRLLDIAFNHFSG 231 (443)
Q Consensus 167 ~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~-----------~~~l~~l~~L~~L~l~~n~~~~ 231 (443)
..+..+..+++++|.+...-..+ +.+-.+|+..+++.-..... .+.+.++|+++..++|.|.|..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34678889999999887443333 34456777777765422111 1455677888888888888776
Q ss_pred CCCcc----ccCCCCCcEEEcccCcCc
Q 040495 232 MIPPP----IFNISSLEVISLSENRFT 254 (443)
Q Consensus 232 ~~~~~----l~~l~~L~~L~l~~n~l~ 254 (443)
..|+. +.+-+.|++|.+++|.+-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 66654 345567777777777653
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.45 E-value=4.7e-08 Score=85.09 Aligned_cols=206 Identities=20% Similarity=0.245 Sum_probs=127.5
Q ss_pred CcEEEEEcCCCCCcccc----cccccCCCCCCEEeCCCCcCCCC-----------CchhhcCCCccCeEEccCCCCCCCC
Q 040495 74 QRVTRLDLRNQSIGGPL----SPYVGNLSFLRYINLANNGFLGE-----------IPPQIGRLNMLEGLVLSNNSFSGTI 138 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~n~~~~~-----------~~~~l~~l~~L~~L~l~~n~~~~~~ 138 (443)
..++.++||+|.+...- ...+++-.+|+..+++.- ++|. +..++.+|++|+..++++|.|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 46889999999886543 334566778888888764 3432 2345678899999999999998777
Q ss_pred Chhh----hcCCCCceeeccCCcccccCCc-------------cccCCcCccEeeeeccccCccCCc----cccCCCCCC
Q 040495 139 PTNL----SRRSNLIELSVDTNYLVGEIPS-------------AIGSLFKLERLFIFHNHITGQLPA----SIGNLSSLL 197 (443)
Q Consensus 139 p~~l----~~l~~L~~L~l~~n~l~~~~p~-------------~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~ 197 (443)
|+.+ +.-+.|++|.+++|.+....-. ...+-|.|+.+..+.|++-..... .+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 7654 4567899999988876421111 123456788888888776522111 122234677
Q ss_pred EEEccCCcCCccc------ccccCCCCCCEEEcccccCCCCC----CccccCCCCCcEEEcccCcCcccCChhhh-----
Q 040495 198 AFDVRENILWGRI------DSLVQLRNLRLLDIAFNHFSGMI----PPPIFNISSLEVISLSENRFTGSLPVDAG----- 262 (443)
Q Consensus 198 ~L~l~~n~l~~~~------~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----- 262 (443)
.+.+..|.+.... ..+..+.+|+.||+..|.++-.- ...+..|+.|++|.+.+|-++..-...++
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 7777777665331 33455677777777777765322 22344566677777777766533322221
Q ss_pred cCCCCCcEEeCCCCcCCc
Q 040495 263 VNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 263 ~~~~~L~~L~L~~n~l~~ 280 (443)
...|+|..|...+|-..+
T Consensus 269 ~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 269 KFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hcCCCccccccchhhhcC
Confidence 124666666666665443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=6.9e-09 Score=101.59 Aligned_cols=126 Identities=22% Similarity=0.390 Sum_probs=56.1
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCcc-CcCCCCCCEEe
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRLEMIE 296 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~~~~L~~L~ 296 (443)
.|...+.++|.+. .+..++.-++.|+.|+|+.|+++ ... .+. .++.|++|++++|.+. .+|.. ...| +|+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr-~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLR-RLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHH-hcccccccccccchhc-cccccchhhh-hheeee
Confidence 3444444555443 22233444455555555555554 221 222 3555555555555554 22321 1222 255555
Q ss_pred cccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcC
Q 040495 297 FSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRF 356 (443)
Q Consensus 297 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 356 (443)
+++|.++.. ..+.++.+|+-||+++|-+.+... ...+..+..|+.|+|.+|++
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hse-----L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-----LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchh-----hhHHHHHHHHHHHhhcCCcc
Confidence 555555421 123455555555555554443221 01233344455555555544
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.33 E-value=6.2e-08 Score=75.67 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=89.0
Q ss_pred CCEEecccCcCccccch---hhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc
Q 040495 292 LEMIEFSRNQFSGRVSV---DFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (443)
+..++++.|++.. ++. .+.....|...++++|.+....+ +.....+.++.|++++|.++ .+|..+..+
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~------kft~kf~t~t~lNl~~neis-dvPeE~Aam- 99 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPK------KFTIKFPTATTLNLANNEIS-DVPEELAAM- 99 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCH------HHhhccchhhhhhcchhhhh-hchHHHhhh-
Confidence 4445555555431 222 23444556666777777666554 44455567888888888888 778877764
Q ss_pred cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCcccc
Q 040495 369 STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLG 438 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 438 (443)
+.|+.|+++.|++. ..|+.+..+.++..|+..+|.+. .+|-.+-.-...-..++.++.+.+.-|..+.
T Consensus 100 ~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 100 PALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred HHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 78888888888888 66777777888888888888776 4554444334444556677777776665443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=3.5e-07 Score=80.80 Aligned_cols=213 Identities=17% Similarity=0.129 Sum_probs=128.2
Q ss_pred cCCCCceeeccCCcccccC-Cccc-cCCcCccEeeeeccccCc--cCCccccCCCCCCEEEccCCcCCcccccc-cCCCC
Q 040495 144 RRSNLIELSVDTNYLVGEI-PSAI-GSLFKLERLFIFHNHITG--QLPASIGNLSSLLAFDVRENILWGRIDSL-VQLRN 218 (443)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~-p~~l-~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~l-~~l~~ 218 (443)
....++.+.+.++.+...- ...+ ..++.++++++.+|.++. .+...+.+++.|+.|+++.|.+...+..+ ....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 3344555555555543111 1112 235678888888888763 23344567888888888888887777554 46778
Q ss_pred CCEEEcccccCCCC-CCccccCCCCCcEEEcccCcCcccCCh--hhhcCCCCCcEEeCCCCcCCc--cCCccCcCCCCCC
Q 040495 219 LRLLDIAFNHFSGM-IPPPIFNISSLEVISLSENRFTGSLPV--DAGVNLPNLRQLSPNGNNFTG--SIPVSLSNASRLE 293 (443)
Q Consensus 219 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~ 293 (443)
|+.+-+.+..+.-. ....+..++.+++|+++.|++.....+ .+-.-.+.++++.+..|.... .+...-.-++++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 88888877766532 223455677778888877754311110 000012345555555543320 1111123356778
Q ss_pred EEecccCcCccccc-hhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCC
Q 040495 294 MIEFSRNQFSGRVS-VDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP 361 (443)
Q Consensus 294 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 361 (443)
.+.+..|.+..... ..+..++.+..|+++.|++.... ....+.++++|..|.++++++.+.+.
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa-----svD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA-----SVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHH-----HHHHHcCCchhheeeccCCccccccc
Confidence 88888887764332 23556777778888888876543 34678888999999999998875544
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=3.8e-06 Score=53.02 Aligned_cols=36 Identities=36% Similarity=0.594 Sum_probs=19.1
Q ss_pred CCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCc
Q 040495 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 45545555555555555555555
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.03 E-value=1.1e-05 Score=67.72 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=63.5
Q ss_pred CCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecC-chhhhcCC
Q 040495 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI-PPGIRSHA 393 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~~~ 393 (443)
....+|+++|.+..... |..++.|..|.+.+|+|+ .|.+.+..+.++|+.|.|.+|.+.... -..+..++
T Consensus 43 ~~d~iDLtdNdl~~l~~--------lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--------LPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred ccceecccccchhhccc--------CCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCC
Confidence 34556666666555433 566677777777777777 444455555567777777777665221 12356677
Q ss_pred CCCeEeCcCCcCcccCc---hhhcCCCCCCEEEccCC
Q 040495 394 NLNWLTMDSNLFTGTIP---PVIGELKNLQLLDLGGN 427 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~l~~n 427 (443)
+|++|.+-+|+.+..-- -.+..+++|+.||.++=
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77777777777762211 13556777777777653
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=9e-06 Score=51.34 Aligned_cols=36 Identities=22% Similarity=0.556 Sum_probs=22.9
Q ss_pred CCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc
Q 040495 370 TIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 370 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666667777666 45555677777777777777666
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=5.5e-05 Score=71.76 Aligned_cols=137 Identities=16% Similarity=0.204 Sum_probs=89.6
Q ss_pred ccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccC-cCccccchhhhCCCC
Q 040495 237 IFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN-QFSGRVSVDFSRLKN 315 (443)
Q Consensus 237 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~ 315 (443)
+..+.+++.|++++|.++ .+|. -.++|++|.++++.--..+|..+ .++|+.|++++| .+. .+| +.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cc
Confidence 344688999999999887 7772 35679999998864333666554 368999999998 443 344 35
Q ss_pred CCEEEccCCCCcccCCCchhhHhhhcCC-CCCCEEEccCCcCc--ccCChhHhhhccCCCEEeccCCcCeecCchhhhcC
Q 040495 316 LSFLNMGINNLGTRTANELDFINLLANC-SKLERLYFNRNRFQ--GVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH 392 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~--~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~ 392 (443)
|+.|++..+..... ..+ ++|+.|.+.+++.. ..+|. .++++|+.|++++|... ..|..+-
T Consensus 114 Le~L~L~~n~~~~L-----------~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP-- 176 (426)
T PRK15386 114 VRSLEIKGSATDSI-----------KNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP-- 176 (426)
T ss_pred cceEEeCCCCCccc-----------ccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--
Confidence 77788776554321 111 46778887543311 11221 24578999999998865 3454333
Q ss_pred CCCCeEeCcCCc
Q 040495 393 ANLNWLTMDSNL 404 (443)
Q Consensus 393 ~~L~~L~L~~n~ 404 (443)
.+|+.|+++.+.
T Consensus 177 ~SLk~L~ls~n~ 188 (426)
T PRK15386 177 ESLQSITLHIEQ 188 (426)
T ss_pred ccCcEEEecccc
Confidence 578899988763
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=2.7e-05 Score=73.81 Aligned_cols=138 Identities=16% Similarity=0.222 Sum_probs=89.4
Q ss_pred ccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCC-cCCccCCccCcCCCC
Q 040495 213 LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN-NFTGSIPVSLSNASR 291 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~ 291 (443)
+..+.+++.|++++|.+. .+|. -..+|++|.++++.--..+|..+ .++|++|++++| .+. .+|. .
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence 445689999999999776 4452 23469999999864434677543 468999999998 554 4553 5
Q ss_pred CCEEecccCcCccccchhhhCC-CCCCEEEccCCC-CcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhcc
Q 040495 292 LEMIEFSRNQFSGRVSVDFSRL-KNLSFLNMGINN-LGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSS 369 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 369 (443)
|+.|++..+.... +..+ ++|+.|.+..++ ....... .. -.++|++|++++|... ..|..+ +.
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp-----~~--LPsSLk~L~Is~c~~i-~LP~~L---P~ 177 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARID-----NL--ISPSLKTLSLTGCSNI-ILPEKL---PE 177 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheeccccccccccccc-----cc--cCCcccEEEecCCCcc-cCcccc---cc
Confidence 7788887665431 2233 246777775432 1111000 00 1268999999999866 455433 46
Q ss_pred CCCEEeccCCc
Q 040495 370 TIKQIAMGRNR 380 (443)
Q Consensus 370 ~L~~L~L~~n~ 380 (443)
+|+.|+++.+.
T Consensus 178 SLk~L~ls~n~ 188 (426)
T PRK15386 178 SLQSITLHIEQ 188 (426)
T ss_pred cCcEEEecccc
Confidence 89999998774
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=6.2e-06 Score=84.48 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=39.6
Q ss_pred CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcc-ccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcC
Q 040495 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLAN 342 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 342 (443)
++|+|..||+++.+++.. ..++.+++|++|.+.+=.+.. ..-..+-.+++|+.||+|.............+...-..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 444555555555444421 334444455555444433332 11112344555555555544333322111112222233
Q ss_pred CCCCCEEEccCCcCccc
Q 040495 343 CSKLERLYFNRNRFQGV 359 (443)
Q Consensus 343 ~~~L~~L~l~~n~l~~~ 359 (443)
+|+|+.||.+++.+.+.
T Consensus 249 LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEE 265 (699)
T ss_pred CccccEEecCCcchhHH
Confidence 45555555555554433
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.67 E-value=1.9e-06 Score=79.76 Aligned_cols=300 Identities=14% Similarity=0.095 Sum_probs=148.1
Q ss_pred CCCEEeCCCCcCCCC--CchhhcCCCccCeEEccCCC-CCCCCChhh-hcCCCCceeeccCCc-ccccCCc-cccCCcCc
Q 040495 99 FLRYINLANNGFLGE--IPPQIGRLNMLEGLVLSNNS-FSGTIPTNL-SRRSNLIELSVDTNY-LVGEIPS-AIGSLFKL 172 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~-~~~~~p~~l-~~l~~L~~L~l~~n~-l~~~~p~-~l~~l~~L 172 (443)
.|+.|.++++.-.+. +-....+++++++|.+.++. +++..-..+ ..+++|+++++..|. ++...-. -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466666666643322 22223456677777666653 222222222 245667777766633 2211111 22356777
Q ss_pred cEeeeeccc-cCcc-CCccccCCCCCCEEEccCCcCCccc---ccccCCCCCCEEEcccc-cCCCCCCcc-ccCCCCCcE
Q 040495 173 ERLFIFHNH-ITGQ-LPASIGNLSSLLAFDVRENILWGRI---DSLVQLRNLRLLDIAFN-HFSGMIPPP-IFNISSLEV 245 (443)
Q Consensus 173 ~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~---~~l~~l~~L~~L~l~~n-~~~~~~~~~-l~~l~~L~~ 245 (443)
++++++.+. +++. +-....++..++.+.+.||.-.+.. ..-+....+.++++..+ ++++...-. -..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 777777663 2321 1112334555555555554222111 11123344555554443 222221101 113456777
Q ss_pred EEcccCcC-cccCChhhhcCCCCCcEEeCCCCc-CCccCCccC-cCCCCCCEEecccCcCccc--cchhhhCCCCCCEEE
Q 040495 246 ISLSENRF-TGSLPVDAGVNLPNLRQLSPNGNN-FTGSIPVSL-SNASRLEMIEFSRNQFSGR--VSVDFSRLKNLSFLN 320 (443)
Q Consensus 246 L~l~~n~l-~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l-~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ 320 (443)
+..+++.. +...-..++.+..+|+.+.+..++ |+..--..+ .+++.|+.+++.++..... +-..-.+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 77766633 323334455567788888887774 332211122 3567788888777654321 111224577788888
Q ss_pred ccCCCCcccC-CCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCc-Ceec-CchhhhcCCCCCe
Q 040495 321 MGINNLGTRT-ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR-ISGT-IPPGIRSHANLNW 397 (443)
Q Consensus 321 l~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~-l~~~-~p~~l~~~~~L~~ 397 (443)
++.+..-.+. ... +...-.....|+.+.+++++..-.-.-.....+++|+.+++.+++ ++.+ +...-..+++++.
T Consensus 379 lshce~itD~gi~~--l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 379 LSHCELITDEGIRH--LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred hhhhhhhhhhhhhh--hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 8766433222 100 002234567788888888875422111222235788888888876 3222 3333456666665
Q ss_pred EeC
Q 040495 398 LTM 400 (443)
Q Consensus 398 L~L 400 (443)
.-+
T Consensus 457 ~a~ 459 (483)
T KOG4341|consen 457 HAY 459 (483)
T ss_pred hhh
Confidence 443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=2.9e-05 Score=79.66 Aligned_cols=136 Identities=23% Similarity=0.314 Sum_probs=87.3
Q ss_pred CCcEEEcccCc-CcccCChhhhcCCCCCcEEeCCCCcCCc-cCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEE
Q 040495 242 SLEVISLSENR-FTGSLPVDAGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFL 319 (443)
Q Consensus 242 ~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
+|++|++++.. +...-|..++..+|+|++|.+.+-.+.. .+-....++++|..||+++.+++.. ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 45555555542 2234456667778999999988876642 2344556788999999999888854 557888888888
Q ss_pred EccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhh------hccCCCEEeccCCcCeecC
Q 040495 320 NMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN------FSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~------~~~~L~~L~L~~n~l~~~~ 385 (443)
.+.+-.+.... -...+..+++|+.||+|..+... .+..+.. ..|.|+.||.|+..+.+.+
T Consensus 201 ~mrnLe~e~~~-----~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 201 SMRNLEFESYQ-----DLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred hccCCCCCchh-----hHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 88766554321 11456778888888888776552 2221111 1356777777766666543
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.62 E-value=2.7e-06 Score=78.73 Aligned_cols=82 Identities=17% Similarity=0.050 Sum_probs=37.3
Q ss_pred ccCeEEccCCCCCCC--CChhhhcCCCCceeeccCCcc-cccCCccc-cCCcCccEeeeecc-ccCccCCcc-ccCCCCC
Q 040495 123 MLEGLVLSNNSFSGT--IPTNLSRRSNLIELSVDTNYL-VGEIPSAI-GSLFKLERLFIFHN-HITGQLPAS-IGNLSSL 196 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~--~p~~l~~l~~L~~L~l~~n~l-~~~~p~~l-~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L 196 (443)
.|+.|.+.++.-.+. +-..-.+++++++|.+.++.. +...-..+ ..+++|+++++..+ .++...-.. -..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466667766643322 122234566666666665542 11111111 34556666666552 233222221 1245555
Q ss_pred CEEEccCC
Q 040495 197 LAFDVREN 204 (443)
Q Consensus 197 ~~L~l~~n 204 (443)
++++++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 56655555
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=0.00012 Score=61.52 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=34.2
Q ss_pred CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc--ccccCCCCCCEEEcccccCCCCC---CccccCCCCC
Q 040495 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLRLLDIAFNHFSGMI---PPPIFNISSL 243 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~l~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L 243 (443)
++.|.+|.+++|.++..-|.--.-+++|..|.+.+|.+.... ..+..+|+|++|.+-+|+.+..- -..+..+++|
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence 344444444444444222222222333444444444433222 44455555555555555544221 1123344555
Q ss_pred cEEEccc
Q 040495 244 EVISLSE 250 (443)
Q Consensus 244 ~~L~l~~ 250 (443)
+.||+++
T Consensus 143 ~~LDF~k 149 (233)
T KOG1644|consen 143 RTLDFQK 149 (233)
T ss_pred eEeehhh
Confidence 5555443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.19 E-value=0.0012 Score=52.82 Aligned_cols=60 Identities=30% Similarity=0.396 Sum_probs=20.9
Q ss_pred CcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccC
Q 040495 286 LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNR 353 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 353 (443)
|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +..... ..+.++++++.+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~------~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD------NAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T------TTTTT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce------eeeecccccccccccc
Confidence 44444455555442 233333334444444555554432 222222 3344454555555543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.15 E-value=0.00094 Score=53.53 Aligned_cols=59 Identities=27% Similarity=0.352 Sum_probs=21.2
Q ss_pred ccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecc
Q 040495 237 IFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 237 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
|.++++|+.+.+.+ .+. .++...+.++++++.+.+..+ +...-...+.++++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44445555555543 233 344444444445555555443 332223334444445555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=4.8e-05 Score=66.97 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=51.2
Q ss_pred CCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCC
Q 040495 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 344 (443)
+.+.+.|++.++++.+. .....++.|++|.|+-|+|+..-| +..|++|++|+|..|.|.+... ..-+.+++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-----L~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-----LEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-----HHHHhcCc
Confidence 34556666666666532 233456667777777776664433 4566666666666666544321 23455666
Q ss_pred CCCEEEccCCcCcccCCh
Q 040495 345 KLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~ 362 (443)
+|+.|.|..|+-.|..+.
T Consensus 89 sLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred hhhhHhhccCCcccccch
Confidence 666666666665554443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.92 E-value=0.00032 Score=36.86 Aligned_cols=22 Identities=68% Similarity=0.943 Sum_probs=15.4
Q ss_pred CCCEEEccCCcCcccCCccccCC
Q 040495 418 NLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 418 ~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
+|++||+++|+++ .||++|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4677888888777 777776654
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00046 Score=60.53 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=29.8
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCC--CCCCCCChhhhcCCCCceeeccCCcc
Q 040495 92 PYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNN--SFSGTIPTNLSRRSNLIELSVDTNYL 158 (443)
Q Consensus 92 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n--~~~~~~p~~l~~l~~L~~L~l~~n~l 158 (443)
.....+..|+.|++.+..++. -..+..+++|++|.++.| .+++.++.-...+++|+++++++|++
T Consensus 37 gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 333344455555554444431 112334455555555555 33333333333445555555555554
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00069 Score=59.44 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=45.2
Q ss_pred CCCCCcEEeCCCC--cCCccCCccCcCCCCCCEEecccCcCccc-cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhh
Q 040495 264 NLPNLRQLSPNGN--NFTGSIPVSLSNASRLEMIEFSRNQFSGR-VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL 340 (443)
Q Consensus 264 ~~~~L~~L~L~~n--~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 340 (443)
.+++|+.|.++.| +..+.++.....+++|+++++++|++... .-..+..+.+|..|++.+|..+..... ....|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dy---re~vf 139 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDY---REKVF 139 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccH---HHHHH
Confidence 3556666666666 44555555555556666666666665521 011134555666666666655442211 11334
Q ss_pred cCCCCCCEEEcc
Q 040495 341 ANCSKLERLYFN 352 (443)
Q Consensus 341 ~~~~~L~~L~l~ 352 (443)
.-+++|++|+-.
T Consensus 140 ~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 140 LLLPSLKYLDGC 151 (260)
T ss_pred HHhhhhcccccc
Confidence 555666666543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00031 Score=62.07 Aligned_cols=98 Identities=17% Similarity=0.344 Sum_probs=64.1
Q ss_pred CCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh-h-Hhhh
Q 040495 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ-S-MANF 367 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~-~~~~ 367 (443)
.+.++|++.++.++++ ....+++.|+.|.|+-|+++...+ +..|.+|++|+|..|.|.+ +.+ . +.+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--------l~rCtrLkElYLRkN~I~s-ldEL~YLkn- 86 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--------LQRCTRLKELYLRKNCIES-LDELEYLKN- 86 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--------HHHHHHHHHHHHHhccccc-HHHHHHHhc-
Confidence 4566778888887743 224577888888888888877765 7778888888888887762 222 1 222
Q ss_pred ccCCCEEeccCCcCeecCch-----hhhcCCCCCeEe
Q 040495 368 SSTIKQIAMGRNRISGTIPP-----GIRSHANLNWLT 399 (443)
Q Consensus 368 ~~~L~~L~L~~n~l~~~~p~-----~l~~~~~L~~L~ 399 (443)
.|+|+.|-|..|+..|..+. .+..+++|++||
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 36667777777776665443 245566666653
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.27 E-value=0.00043 Score=69.22 Aligned_cols=60 Identities=27% Similarity=0.319 Sum_probs=24.7
Q ss_pred CCCCEEEccccc-CCCCCCccccC-CCCCcEEEcccCc-CcccCChhhhcCCCCCcEEeCCCC
Q 040495 217 RNLRLLDIAFNH-FSGMIPPPIFN-ISSLEVISLSENR-FTGSLPVDAGVNLPNLRQLSPNGN 276 (443)
Q Consensus 217 ~~L~~L~l~~n~-~~~~~~~~l~~-l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n 276 (443)
++|+.++++++. +++..-..++. +++|++|.+.++. ++..--..+...+++|++|+++++
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 444555554444 32222222221 4445555544443 332222333334445555555544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.44 E-value=0.0059 Score=31.95 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=8.6
Q ss_pred CCeEeCcCCcCcccCchhh
Q 040495 395 LNWLTMDSNLFTGTIPPVI 413 (443)
Q Consensus 395 L~~L~L~~n~~~~~~p~~~ 413 (443)
|++|++++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555544 444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.21 E-value=0.00027 Score=69.49 Aligned_cols=84 Identities=18% Similarity=0.136 Sum_probs=42.4
Q ss_pred CCEEEcccccCCCCCC----ccccCCCCCcEEEcccCcCcccCChhhhc---C-CCCCcEEeCCCCcCCcc----CCccC
Q 040495 219 LRLLDIAFNHFSGMIP----PPIFNISSLEVISLSENRFTGSLPVDAGV---N-LPNLRQLSPNGNNFTGS----IPVSL 286 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~-~~~L~~L~L~~n~l~~~----~~~~l 286 (443)
+..+.+.+|.+..... ..+.....|..|++++|.+.+.--..+.. . -..++.|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6667777777664422 23344566777777777665221111111 1 13345555555555432 22334
Q ss_pred cCCCCCCEEecccCcC
Q 040495 287 SNASRLEMIEFSRNQF 302 (443)
Q Consensus 287 ~~~~~L~~L~l~~n~l 302 (443)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455555666665554
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.60 E-value=0.021 Score=27.68 Aligned_cols=13 Identities=54% Similarity=0.669 Sum_probs=6.5
Q ss_pred CCCEEEccCCcCc
Q 040495 418 NLQLLDLGGNFLQ 430 (443)
Q Consensus 418 ~L~~L~l~~n~l~ 430 (443)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666666666665
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.50 E-value=0.02 Score=57.19 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=78.4
Q ss_pred CCCCCcEEeCCCCc-CCcc-CCccCcCCCCCCEEecccC-cCccccc----hhhhCCCCCCEEEccCCC-CcccCCCchh
Q 040495 264 NLPNLRQLSPNGNN-FTGS-IPVSLSNASRLEMIEFSRN-QFSGRVS----VDFSRLKNLSFLNMGINN-LGTRTANELD 335 (443)
Q Consensus 264 ~~~~L~~L~L~~n~-l~~~-~~~~l~~~~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 335 (443)
..+.|+.+.+..+. ++.. .-.....++.|+.|+++++ ......+ .....+++|+.++++... +++...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l---- 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL---- 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH----
Confidence 46788888888773 3321 3344566788888888873 2211111 223456778888888766 333222
Q ss_pred hHhhhcCCCCCCEEEccCCc-CcccCChhHhhhccCCCEEeccCCcCe-ec-CchhhhcCCCCCeEeCcC
Q 040495 336 FINLLANCSKLERLYFNRNR-FQGVLPQSMANFSSTIKQIAMGRNRIS-GT-IPPGIRSHANLNWLTMDS 402 (443)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~L~~n~l~-~~-~p~~l~~~~~L~~L~L~~ 402 (443)
......|++|++|.+.++. +++..-..+...++.|+.|+++.+... +. +.....++++++.+.+..
T Consensus 262 -~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 262 -SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred -HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 1222337788888877776 565544555555677888888877643 21 333345566666655433
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.43 E-value=0.00055 Score=67.38 Aligned_cols=207 Identities=19% Similarity=0.214 Sum_probs=120.6
Q ss_pred CCCCEEEccCCcCCccc-----ccccCCCCCCEEEcccccCCCCCCcc----ccCC-CCCcEEEcccCcCccc----CCh
Q 040495 194 SSLLAFDVRENILWGRI-----DSLVQLRNLRLLDIAFNHFSGMIPPP----IFNI-SSLEVISLSENRFTGS----LPV 259 (443)
Q Consensus 194 ~~L~~L~l~~n~l~~~~-----~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~ 259 (443)
..+..+.+.+|.+.... ..+...+.|+.|++++|.+.+.-... +... ..++.|++..|.+++. +..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34777888888776443 45566789999999999887432221 2222 4567788887877643 334
Q ss_pred hhhcCCCCCcEEeCCCCcCCc----cCCccCc----CCCCCCEEecccCcCccccch----hhhCCCC-CCEEEccCCCC
Q 040495 260 DAGVNLPNLRQLSPNGNNFTG----SIPVSLS----NASRLEMIEFSRNQFSGRVSV----DFSRLKN-LSFLNMGINNL 326 (443)
Q Consensus 260 ~~~~~~~~L~~L~L~~n~l~~----~~~~~l~----~~~~L~~L~l~~n~l~~~~~~----~~~~l~~-L~~L~l~~n~l 326 (443)
.+. ....++.++++.|.+.. .++..+. ...++++|++.+|.++..... .+...+. +..+++..|.+
T Consensus 167 ~L~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 167 VLE-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHh-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 444 47788889999887731 1222233 356778888888877632211 2334444 66677777777
Q ss_pred cccCCCchhhHhhhcCC-CCCCEEEccCCcCcccCChhHhhh---ccCCCEEeccCCcCeecCc----hhhhcCCCCCeE
Q 040495 327 GTRTANELDFINLLANC-SKLERLYFNRNRFQGVLPQSMANF---SSTIKQIAMGRNRISGTIP----PGIRSHANLNWL 398 (443)
Q Consensus 327 ~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~---~~~L~~L~L~~n~l~~~~p----~~l~~~~~L~~L 398 (443)
.+..... ....+..+ ..++.++++.|.+++.....+... ++.++.+.+++|.+.+..- ..+.....+..+
T Consensus 246 ~d~g~~~--L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~ 323 (478)
T KOG4308|consen 246 GDVGVEK--LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHL 323 (478)
T ss_pred chHHHHH--HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhh
Confidence 6552211 11334444 566777777777775555443321 3466777777777665422 122333444455
Q ss_pred eCcCC
Q 040495 399 TMDSN 403 (443)
Q Consensus 399 ~L~~n 403 (443)
.+.++
T Consensus 324 ~l~~~ 328 (478)
T KOG4308|consen 324 VLGGT 328 (478)
T ss_pred hcccc
Confidence 55543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.91 E-value=0.0047 Score=53.34 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=62.1
Q ss_pred hhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCC
Q 040495 339 LLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKN 418 (443)
Q Consensus 339 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~ 418 (443)
.+......+.||++.|++. ..-..+.. .+.+..+|++.|++. ..|..++....++.+++.+|..+ ..|.++...+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~-~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSI-LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHH-HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 3445566777777777665 22222333 256777888888777 67777777777788888877777 77888888888
Q ss_pred CCEEEccCCcCc
Q 040495 419 LQLLDLGGNFLQ 430 (443)
Q Consensus 419 L~~L~l~~n~l~ 430 (443)
++++++.+|.|.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888888766
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.76 E-value=0.029 Score=47.55 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=23.6
Q ss_pred ccCCCEEeccCCc-CeecCchhhhcCCCCCeEeCcCC
Q 040495 368 SSTIKQIAMGRNR-ISGTIPPGIRSHANLNWLTMDSN 403 (443)
Q Consensus 368 ~~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~L~~n 403 (443)
.++|+.|+|++|. ||+..-.++..+++|+.|.+.+=
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 4667777777664 66555566677777777777653
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.40 E-value=0.0054 Score=52.99 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=40.8
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCcc
Q 040495 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 173 (443)
+..+...+.||++.|.+. .+...++-++.+..|+++.|.+. ..|.++++...++.++...|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 334444444444444433 23333444445555555555544 44555555555555555444444 4455555555555
Q ss_pred Eeeeeccc
Q 040495 174 RLFIFHNH 181 (443)
Q Consensus 174 ~L~l~~n~ 181 (443)
+++.-.|.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55554444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.09 E-value=0.19 Score=27.26 Aligned_cols=19 Identities=47% Similarity=0.670 Sum_probs=11.8
Q ss_pred CCCCEEEccCCcCcccCCcc
Q 040495 417 KNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 417 ~~L~~L~l~~n~l~~~~p~~ 436 (443)
++|++|++++|++. .+|+.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666777777666 55543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.09 E-value=0.19 Score=27.26 Aligned_cols=19 Identities=47% Similarity=0.670 Sum_probs=11.8
Q ss_pred CCCCEEEccCCcCcccCCcc
Q 040495 417 KNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 417 ~~L~~L~l~~n~l~~~~p~~ 436 (443)
++|++|++++|++. .+|+.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666777777666 55543
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.82 E-value=0.26 Score=26.73 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=11.3
Q ss_pred CCCCEEEccCCcCcccCChhH
Q 040495 344 SKLERLYFNRNRFQGVLPQSM 364 (443)
Q Consensus 344 ~~L~~L~l~~n~l~~~~p~~~ 364 (443)
++|++|++++|+++ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45566666666665 455443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.82 E-value=0.26 Score=26.73 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=11.3
Q ss_pred CCCCEEEccCCcCcccCChhH
Q 040495 344 SKLERLYFNRNRFQGVLPQSM 364 (443)
Q Consensus 344 ~~L~~L~l~~n~l~~~~p~~~ 364 (443)
++|++|++++|+++ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45566666666665 455443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.70 E-value=0.036 Score=29.59 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=6.7
Q ss_pred CCCCEEEccCCcCccc
Q 040495 417 KNLQLLDLGGNFLQGS 432 (443)
Q Consensus 417 ~~L~~L~l~~n~l~~~ 432 (443)
++|++|+|++|+++++
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3445555555554433
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.26 E-value=0.1 Score=27.75 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=4.6
Q ss_pred CCCEEeccCCcCe
Q 040495 370 TIKQIAMGRNRIS 382 (443)
Q Consensus 370 ~L~~L~L~~n~l~ 382 (443)
+|+.|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.20 E-value=0.22 Score=42.46 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=45.5
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCC-CCchhhc-CCCccCeEEccCC-CCCCCCChhhhcCCCCcee
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLG-EIPPQIG-RLNMLEGLVLSNN-SFSGTIPTNLSRRSNLIEL 151 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~-~l~~L~~L~l~~n-~~~~~~p~~l~~l~~L~~L 151 (443)
.|+.+|-++..+.+.--+.+..++.++.|.+.++.--+ .--+.++ -.++|+.|++++| .|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 47777777777766555566677777777776664322 1111222 2356677777655 4554444445555566655
Q ss_pred ecc
Q 040495 152 SVD 154 (443)
Q Consensus 152 ~l~ 154 (443)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 554
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.94 E-value=8.7 Score=37.40 Aligned_cols=235 Identities=12% Similarity=0.054 Sum_probs=108.6
Q ss_pred CccEeeeeccccCccCCccccC---CCCCCEEEccCCcCCccc----ccccCCCCCCEEEcccccCCC----CCC----c
Q 040495 171 KLERLFIFHNHITGQLPASIGN---LSSLLAFDVRENILWGRI----DSLVQLRNLRLLDIAFNHFSG----MIP----P 235 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~~n~l~~~~----~~l~~l~~L~~L~l~~n~~~~----~~~----~ 235 (443)
.+.+++++.|.....+|..+.. -..++.++.++..+.-.. ...+.-.+++..+++.|..+. +.+ .
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 3666777777666566654332 234555555554433222 122334566666666665431 111 1
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCC-----CCCcEEeCCCCcCCc-cCCccCcCCCCCCEEecccCcCccccchh
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNL-----PNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 309 (443)
.+..-.++ +|++..+....+-+..+...+ ..=-.+++..|...+ .+-.+-.+-..++++....|.+.|..-..
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 22233445 555555443322222211000 001123333333221 11111112234777888877776654432
Q ss_pred --hhCCCCCCEEEccCCCC---cccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhh--ccCCCEEeccCCcCe
Q 040495 310 --FSRLKNLSFLNMGINNL---GTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANF--SSTIKQIAMGRNRIS 382 (443)
Q Consensus 310 --~~~l~~L~~L~l~~n~l---~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~--~~~L~~L~L~~n~l~ 382 (443)
..+-+..+.+++..-.- .+.....-.....-....-++.+.++.|++....-..+... .+.+..+++++|.-.
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 33445666666654221 11100000000111223347778888887763322222211 357788888888655
Q ss_pred ec----CchhhhcCCCCCeEeCcCCcCc
Q 040495 383 GT----IPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 383 ~~----~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
.. +|..+.....++.+..+.|...
T Consensus 454 d~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 454 DGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 32 4555555666777777666554
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.62 E-value=0.89 Score=24.69 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=13.2
Q ss_pred CCCCEEEccCCcCcccCCc
Q 040495 417 KNLQLLDLGGNFLQGSIPS 435 (443)
Q Consensus 417 ~~L~~L~l~~n~l~~~~p~ 435 (443)
++|++|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45778888888877 6665
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.22 E-value=2.7 Score=23.25 Aligned_cols=14 Identities=43% Similarity=0.477 Sum_probs=11.4
Q ss_pred CCCCEEEccCCcCc
Q 040495 417 KNLQLLDLGGNFLQ 430 (443)
Q Consensus 417 ~~L~~L~l~~n~l~ 430 (443)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 56888888888886
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.14 E-value=3 Score=22.73 Aligned_cols=15 Identities=47% Similarity=0.616 Sum_probs=11.9
Q ss_pred CCCCCEEEccCCcCc
Q 040495 416 LKNLQLLDLGGNFLQ 430 (443)
Q Consensus 416 l~~L~~L~l~~n~l~ 430 (443)
+++|+.|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357888888888886
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.77 E-value=5.3 Score=39.61 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=19.8
Q ss_pred CCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCC
Q 040495 312 RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354 (443)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 354 (443)
+.+.+..+.+++|++...... ...-...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~----sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDAL----SSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhh----hHHHHhcchhheeecccc
Confidence 445566666666665543321 012233455666666665
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.12 E-value=9.1 Score=38.03 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=32.5
Q ss_pred cCCCCCcEEeCCCCcCCcc--CCccCcCCCCCCEEecccCcCccccchhhhC--CCCCCEEEccCCCCccc
Q 040495 263 VNLPNLRQLSPNGNNFTGS--IPVSLSNASRLEMIEFSRNQFSGRVSVDFSR--LKNLSFLNMGINNLGTR 329 (443)
Q Consensus 263 ~~~~~L~~L~L~~n~l~~~--~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~ 329 (443)
.+.+.+..+.|++|++... +...-...|+|..|+|++|...-....++.+ ...|++|-+.+|.+...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 3567777777877776521 1111223456666677666211111112222 23355555555555443
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.37 E-value=19 Score=19.20 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=11.4
Q ss_pred CCCCCEEEccCCc-Cc
Q 040495 416 LKNLQLLDLGGNF-LQ 430 (443)
Q Consensus 416 l~~L~~L~l~~n~-l~ 430 (443)
+++|++|+|++|. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678899998884 55
Done!