Query 040495
Match_columns 443
No_of_seqs 356 out of 4373
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 14:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.8E-55 2E-59 457.5 32.2 403 28-443 7-468 (768)
2 4eco_A Uncharacterized protein 100.0 8.2E-53 2.8E-57 431.7 25.3 391 30-436 27-584 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 1.2E-50 4E-55 423.1 27.2 395 28-437 264-825 (876)
4 3rgz_A Protein brassinosteroid 100.0 1.8E-49 6.1E-54 415.9 30.8 360 75-436 295-723 (768)
5 4eco_A Uncharacterized protein 100.0 5.4E-44 1.8E-48 366.3 22.8 332 90-430 198-600 (636)
6 3t6q_A CD180 antigen; protein- 100.0 2.2E-42 7.7E-47 353.7 32.7 360 74-442 33-477 (606)
7 3v47_A TOLL-like receptor 5B a 100.0 9.9E-43 3.4E-47 344.0 28.7 354 74-434 30-412 (455)
8 3t6q_A CD180 antigen; protein- 100.0 3.3E-42 1.1E-46 352.4 32.1 363 74-443 57-526 (606)
9 1ogq_A PGIP-2, polygalacturona 100.0 2.1E-43 7E-48 331.0 20.4 292 29-325 2-302 (313)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-42 9.9E-47 352.9 29.2 357 74-441 32-544 (606)
11 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-42 1.8E-46 346.8 26.2 363 61-442 3-498 (549)
12 4ecn_A Leucine-rich repeat pro 100.0 1.2E-41 4.2E-46 355.2 25.6 329 90-436 440-846 (876)
13 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-40 1.2E-44 341.8 35.3 367 74-441 25-504 (680)
14 2z63_A TOLL-like receptor 4, v 100.0 3.6E-41 1.2E-45 342.3 27.0 359 74-442 28-519 (570)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-40 5.4E-45 333.8 29.2 343 74-434 21-485 (520)
16 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-40 1.1E-44 337.8 28.2 351 74-434 56-562 (606)
17 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-40 6.1E-45 351.2 26.5 288 62-357 14-375 (844)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.6E-40 3.3E-44 330.9 28.5 342 74-434 52-514 (562)
19 2z63_A TOLL-like receptor 4, v 100.0 2.1E-39 7.2E-44 329.3 26.7 351 74-435 52-536 (570)
20 1ziw_A TOLL-like receptor 3; i 100.0 7.2E-39 2.5E-43 332.1 30.6 350 74-431 222-598 (680)
21 3v47_A TOLL-like receptor 5B a 100.0 5.1E-39 1.7E-43 317.4 27.3 339 98-443 30-397 (455)
22 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-38 4.6E-43 321.9 25.4 343 74-434 50-514 (549)
23 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-38 4.2E-43 337.1 26.0 364 74-440 48-549 (844)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-37 4.6E-42 312.5 26.2 349 77-443 3-470 (520)
25 3o6n_A APL1; leucine-rich repe 100.0 4.3E-37 1.5E-41 297.5 26.9 310 96-431 43-353 (390)
26 2id5_A Lingo-1, leucine rich r 100.0 5E-37 1.7E-41 305.0 28.0 319 78-407 15-334 (477)
27 1o6v_A Internalin A; bacterial 100.0 2.1E-36 7.1E-41 299.4 32.2 322 74-431 68-389 (466)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.1E-37 1.7E-41 311.0 26.7 350 76-443 33-499 (562)
29 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-36 1.2E-40 309.4 33.2 359 74-440 52-565 (635)
30 1o6v_A Internalin A; bacterial 100.0 9.2E-36 3.2E-40 294.7 34.5 332 74-443 46-377 (466)
31 2id5_A Lingo-1, leucine rich r 100.0 1.2E-36 4.1E-41 302.2 27.5 303 74-384 32-335 (477)
32 3oja_B Anopheles plasmodium-re 100.0 3.2E-36 1.1E-40 306.9 28.4 309 97-431 50-359 (597)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1E-35 3.6E-40 292.5 27.4 333 74-439 42-396 (457)
34 4fmz_A Internalin; leucine ric 100.0 5.4E-35 1.8E-39 278.2 30.1 306 95-430 41-346 (347)
35 3o6n_A APL1; leucine-rich repe 100.0 8.4E-35 2.9E-39 281.4 27.3 311 74-410 45-356 (390)
36 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-34 7.8E-39 283.0 28.4 305 90-431 34-353 (457)
37 1jl5_A Outer protein YOPM; leu 100.0 1.2E-34 4.1E-39 284.7 23.6 338 74-441 11-422 (454)
38 3oja_B Anopheles plasmodium-re 100.0 3.4E-34 1.2E-38 291.9 27.8 335 51-410 8-362 (597)
39 4fcg_A Uncharacterized protein 100.0 2.2E-35 7.4E-40 278.1 17.6 268 28-300 22-311 (328)
40 4fmz_A Internalin; leucine ric 100.0 1.8E-33 6.2E-38 267.6 30.6 303 74-406 44-346 (347)
41 1jl5_A Outer protein YOPM; leu 100.0 2.1E-33 7.1E-38 275.9 30.1 315 74-439 91-438 (454)
42 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-33 5.6E-38 289.4 27.0 351 74-431 76-581 (635)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-36 6.3E-41 299.6 3.9 355 74-432 3-413 (461)
44 1ogq_A PGIP-2, polygalacturona 100.0 7E-34 2.4E-38 266.2 17.0 252 146-431 50-306 (313)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-32 5.2E-37 259.6 24.1 266 123-428 55-331 (332)
46 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-32 7.4E-37 258.5 24.8 279 123-443 34-322 (332)
47 1xku_A Decorin; proteoglycan, 100.0 5E-32 1.7E-36 255.9 27.0 288 99-428 32-330 (330)
48 1xku_A Decorin; proteoglycan, 100.0 5.9E-32 2E-36 255.4 26.9 271 76-357 33-306 (330)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-34 5.8E-39 285.5 2.3 360 74-435 28-445 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 1E-30 3.5E-35 249.2 16.1 285 55-360 23-317 (353)
51 2z66_A Variable lymphocyte rec 100.0 1E-29 3.5E-34 237.4 19.3 249 101-383 10-262 (306)
52 2z66_A Variable lymphocyte rec 100.0 2.7E-29 9.1E-34 234.6 20.1 285 61-391 6-296 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 5.6E-30 1.9E-34 244.1 15.6 288 119-434 28-318 (353)
54 4fcg_A Uncharacterized protein 100.0 6.1E-29 2.1E-33 234.0 20.7 236 96-357 79-314 (328)
55 1ozn_A Reticulon 4 receptor; N 100.0 3E-28 1E-32 225.0 21.9 255 101-390 14-269 (285)
56 3g06_A SSPH2 (leucine-rich rep 100.0 1.3E-27 4.3E-32 241.9 26.5 297 51-416 11-307 (622)
57 3g06_A SSPH2 (leucine-rich rep 100.0 1.7E-28 5.7E-33 248.3 20.0 269 74-393 40-308 (622)
58 1wwl_A Monocyte differentiatio 100.0 6.2E-30 2.1E-34 239.4 6.1 255 94-383 39-310 (312)
59 3zyi_A Leucine-rich repeat-con 100.0 2.7E-27 9.3E-32 233.1 24.3 248 78-331 58-307 (452)
60 3zyi_A Leucine-rich repeat-con 100.0 3.3E-27 1.1E-31 232.5 24.9 245 148-405 56-302 (452)
61 1wwl_A Monocyte differentiatio 100.0 2.3E-30 7.9E-35 242.3 1.9 268 52-357 21-309 (312)
62 3zyj_A Leucine-rich repeat-con 100.0 3E-27 1E-31 232.0 24.1 247 78-330 47-295 (440)
63 3o53_A Protein LRIM1, AGAP0063 100.0 1.6E-29 5.6E-34 237.1 7.3 246 169-435 33-281 (317)
64 1ozn_A Reticulon 4 receptor; N 100.0 8.1E-28 2.8E-32 222.1 18.5 255 77-365 14-269 (285)
65 3ogk_B Coronatine-insensitive 100.0 1.4E-29 4.7E-34 258.2 6.9 356 74-432 112-528 (592)
66 3zyj_A Leucine-rich repeat-con 100.0 4E-27 1.4E-31 231.1 24.0 247 147-406 44-292 (440)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-28 9.9E-33 228.6 9.9 258 76-377 12-270 (317)
68 3ogk_B Coronatine-insensitive 99.9 1.3E-29 4.4E-34 258.4 0.7 350 74-432 73-503 (592)
69 3oja_A Leucine-rich immune mol 99.9 1.3E-27 4.5E-32 236.8 11.4 234 171-425 35-270 (487)
70 2o6q_A Variable lymphocyte rec 99.9 1.4E-25 4.9E-30 205.3 20.9 215 59-278 2-217 (270)
71 3oja_A Leucine-rich immune mol 99.9 2.5E-26 8.5E-31 227.7 14.3 235 123-377 35-270 (487)
72 2p1m_B Transport inhibitor res 99.9 2.9E-28 1E-32 248.5 0.4 355 74-432 105-521 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 1.9E-24 6.6E-29 198.5 21.3 207 219-434 30-241 (276)
74 3rfs_A Internalin B, repeat mo 99.9 7.9E-25 2.7E-29 200.5 15.4 226 171-440 20-245 (272)
75 2z62_A TOLL-like receptor 4, v 99.9 3.9E-24 1.3E-28 196.4 19.8 206 98-328 28-238 (276)
76 2p1m_B Transport inhibitor res 99.9 5.6E-27 1.9E-31 239.0 0.2 352 74-434 66-498 (594)
77 3goz_A Leucine-rich repeat-con 99.9 6.6E-26 2.3E-30 216.5 5.6 268 79-366 3-306 (362)
78 3rfs_A Internalin B, repeat mo 99.9 2E-24 6.8E-29 197.8 13.6 229 146-394 19-247 (272)
79 3goz_A Leucine-rich repeat-con 99.9 1.6E-25 5.4E-30 213.9 6.0 258 150-409 2-300 (362)
80 2o6q_A Variable lymphocyte rec 99.9 8.2E-23 2.8E-27 186.9 23.6 202 100-328 18-219 (270)
81 2ca6_A RAN GTPase-activating p 99.9 3E-25 1E-29 214.0 6.6 249 161-433 23-319 (386)
82 4glp_A Monocyte differentiatio 99.9 2.4E-24 8.4E-29 201.2 12.3 207 216-431 90-308 (310)
83 2ast_B S-phase kinase-associat 99.9 6.1E-25 2.1E-29 207.7 7.9 254 148-438 49-314 (336)
84 2ast_B S-phase kinase-associat 99.9 1.1E-25 3.9E-30 212.8 2.4 268 61-366 36-315 (336)
85 1p9a_G Platelet glycoprotein I 99.9 8E-23 2.7E-27 188.7 21.0 201 94-302 6-207 (290)
86 2ca6_A RAN GTPase-activating p 99.9 1.5E-25 5.3E-30 216.0 2.6 119 265-385 186-319 (386)
87 1p9a_G Platelet glycoprotein I 99.9 1.4E-22 4.7E-27 187.1 20.6 203 118-327 6-208 (290)
88 3m19_A Variable lymphocyte rec 99.9 8.3E-23 2.8E-27 184.8 17.4 191 60-256 3-194 (251)
89 4glp_A Monocyte differentiatio 99.9 2.6E-23 8.9E-28 194.2 11.9 225 98-329 64-309 (310)
90 3m19_A Variable lymphocyte rec 99.9 7.8E-22 2.7E-26 178.4 18.7 180 218-408 15-194 (251)
91 2xwt_C Thyrotropin receptor; s 99.9 2E-22 6.8E-27 180.9 13.9 197 218-428 32-237 (239)
92 2xwt_C Thyrotropin receptor; s 99.9 5.1E-22 1.7E-26 178.2 16.1 199 99-324 32-236 (239)
93 1h6u_A Internalin H; cell adhe 99.9 1.8E-21 6.3E-26 181.3 18.4 209 174-407 23-231 (308)
94 1h6u_A Internalin H; cell adhe 99.9 2.8E-21 9.7E-26 180.0 17.5 82 96-183 39-120 (308)
95 2o6s_A Variable lymphocyte rec 99.9 2.7E-21 9.3E-26 169.6 13.6 195 220-436 10-204 (208)
96 3cvr_A Invasion plasmid antige 99.9 3.8E-21 1.3E-25 192.2 15.8 187 195-416 60-253 (571)
97 3cvr_A Invasion plasmid antige 99.9 2.6E-21 8.8E-26 193.5 13.9 211 54-311 35-251 (571)
98 2o6s_A Variable lymphocyte rec 99.9 4E-21 1.4E-25 168.5 13.0 181 60-262 5-186 (208)
99 4ay9_X Follicle-stimulating ho 99.8 2.6E-20 8.7E-25 176.9 15.5 228 90-324 24-256 (350)
100 4ay9_X Follicle-stimulating ho 99.8 1.9E-20 6.5E-25 177.8 14.2 239 101-354 12-256 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 7.5E-19 2.6E-23 155.2 15.5 154 244-408 14-168 (220)
102 1h6t_A Internalin B; cell adhe 99.8 9.1E-19 3.1E-23 161.6 15.8 173 213-407 42-214 (291)
103 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.3E-23 153.8 15.7 152 244-406 14-165 (220)
104 3e6j_A Variable lymphocyte rec 99.8 1.2E-18 4.2E-23 154.9 14.6 163 54-232 11-174 (229)
105 2xot_A Amphoterin-induced prot 99.8 8.9E-19 3E-23 166.9 14.2 176 220-406 21-202 (361)
106 3e6j_A Variable lymphocyte rec 99.8 3.1E-18 1.1E-22 152.3 16.6 155 243-409 21-175 (229)
107 1h6t_A Internalin B; cell adhe 99.8 1E-18 3.5E-23 161.2 13.4 171 96-304 44-214 (291)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-18 8.5E-23 151.9 15.0 157 220-386 14-170 (220)
109 1m9s_A Internalin B; cell inva 99.8 3E-18 1E-22 173.2 17.5 167 75-254 44-210 (605)
110 2v9t_B SLIT homolog 2 protein 99.8 3.2E-18 1.1E-22 151.2 15.3 154 220-384 14-167 (220)
111 1m9s_A Internalin B; cell inva 99.8 2.5E-18 8.6E-23 173.7 15.9 190 171-383 22-211 (605)
112 1dce_A Protein (RAB geranylger 99.8 7.4E-21 2.5E-25 191.1 -2.9 220 95-351 346-567 (567)
113 4b8c_D Glucose-repressible alc 99.8 6.6E-20 2.2E-24 189.8 2.4 260 30-303 129-404 (727)
114 2xot_A Amphoterin-induced prot 99.8 6E-18 2E-22 161.2 15.7 177 197-384 21-204 (361)
115 4ezg_A Putative uncharacterize 99.8 3.3E-18 1.1E-22 148.4 12.3 152 265-431 43-195 (197)
116 4ezg_A Putative uncharacterize 99.8 4.2E-18 1.4E-22 147.8 12.0 152 95-253 41-193 (197)
117 1dce_A Protein (RAB geranylger 99.7 2.3E-20 7.8E-25 187.5 -5.1 204 144-376 347-567 (567)
118 1xeu_A Internalin C; cellular 99.7 6.5E-18 2.2E-22 153.4 10.9 170 216-408 18-187 (263)
119 4b8c_D Glucose-repressible alc 99.7 1.9E-18 6.6E-23 178.8 7.0 194 222-433 206-407 (727)
120 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.4E-22 150.0 10.7 149 94-254 37-185 (263)
121 3sb4_A Hypothetical leucine ri 99.7 7.5E-18 2.6E-22 158.5 5.9 102 313-423 225-327 (329)
122 2ell_A Acidic leucine-rich nuc 99.7 2.3E-16 7.8E-21 133.1 12.9 137 290-436 24-165 (168)
123 1w8a_A SLIT protein; signaling 99.7 2.8E-16 9.5E-21 135.6 12.5 132 269-410 11-143 (192)
124 1w8a_A SLIT protein; signaling 99.7 4.1E-16 1.4E-20 134.5 12.6 132 220-360 11-142 (192)
125 3sb4_A Hypothetical leucine ri 99.7 2.1E-16 7.2E-21 148.5 10.7 281 74-375 25-327 (329)
126 2je0_A Acidic leucine-rich nuc 99.7 4.3E-16 1.5E-20 128.6 11.0 128 290-426 17-149 (149)
127 2ell_A Acidic leucine-rich nuc 99.7 5.8E-16 2E-20 130.6 11.4 136 265-411 23-164 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 3.6E-16 1.2E-20 129.1 8.6 127 74-202 17-148 (149)
129 2o6r_A Variable lymphocyte rec 99.6 9.9E-15 3.4E-19 124.1 12.6 133 268-410 9-141 (177)
130 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 122.6 13.4 133 243-386 9-141 (177)
131 1a9n_A U2A', U2A'; complex (nu 99.6 8.1E-15 2.8E-19 124.5 10.6 130 264-429 17-152 (176)
132 2wfh_A SLIT homolog 2 protein 99.6 2.3E-14 7.8E-19 123.6 13.5 126 78-207 14-139 (193)
133 2wfh_A SLIT homolog 2 protein 99.6 3.3E-14 1.1E-18 122.5 14.5 126 221-357 14-139 (193)
134 4fdw_A Leucine rich hypothetic 99.6 1.4E-13 4.8E-18 132.3 20.0 264 98-405 113-382 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 2.1E-14 7.3E-19 121.9 10.8 136 236-382 14-153 (176)
136 4fdw_A Leucine rich hypothetic 99.5 4.4E-13 1.5E-17 128.8 20.6 225 92-328 130-359 (401)
137 4fs7_A Uncharacterized protein 99.5 5.6E-13 1.9E-17 128.3 20.6 326 92-443 65-390 (394)
138 1ds9_A Outer arm dynein; leuci 99.5 3E-16 1E-20 136.2 -2.7 152 265-430 17-185 (198)
139 1ds9_A Outer arm dynein; leuci 99.5 4.9E-16 1.7E-20 134.8 -3.3 137 286-435 14-158 (198)
140 4fs7_A Uncharacterized protein 99.5 3.2E-12 1.1E-16 123.0 21.5 323 74-422 71-393 (394)
141 3un9_A NLR family member X1; l 99.4 2E-14 6.8E-19 136.8 -0.1 115 241-357 101-224 (372)
142 3un9_A NLR family member X1; l 99.4 2.3E-14 8E-19 136.3 0.3 189 240-431 71-284 (372)
143 3g39_A Variable lymphocyte rec 99.4 2E-12 7E-17 108.8 11.5 106 243-358 11-116 (170)
144 2r9u_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 107.9 12.4 104 244-357 15-118 (174)
145 3g39_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 108.6 11.1 106 77-185 12-117 (170)
146 2r9u_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 107.2 11.2 104 77-183 15-118 (174)
147 4gt6_A Cell surface protein; l 99.3 3.2E-10 1.1E-14 109.0 23.8 315 93-429 58-390 (394)
148 4gt6_A Cell surface protein; l 99.2 9.4E-10 3.2E-14 105.7 22.4 309 76-405 66-390 (394)
149 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.4E-15 109.1 10.5 102 80-184 14-117 (347)
150 2ra8_A Uncharacterized protein 99.1 1.2E-10 4E-15 109.9 9.1 158 264-428 170-341 (362)
151 2ifg_A High affinity nerve gro 99.1 2.5E-10 8.6E-15 107.7 11.4 105 221-329 12-118 (347)
152 4h09_A Hypothetical leucine ri 99.0 1.1E-07 3.8E-12 90.7 24.2 301 96-417 44-356 (379)
153 2ra8_A Uncharacterized protein 99.0 3.2E-10 1.1E-14 106.9 6.0 142 282-432 164-322 (362)
154 4h09_A Hypothetical leucine ri 99.0 2E-07 7E-12 88.8 24.5 291 118-427 42-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.9 2E-09 6.8E-14 91.7 5.6 119 310-430 32-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 1.1E-08 3.6E-13 87.2 5.0 119 286-406 32-164 (185)
157 3rw6_A Nuclear RNA export fact 98.6 2.3E-09 7.9E-14 96.0 -1.0 21 61-81 77-97 (267)
158 3rw6_A Nuclear RNA export fact 98.3 7.9E-07 2.7E-11 79.5 7.3 79 342-423 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.8E-11 72.9 3.6 84 315-404 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 1.7E-06 5.7E-11 71.8 3.1 84 74-157 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 98.0 5.7E-06 1.9E-10 70.0 5.6 91 339-429 65-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 2E-05 6.9E-10 66.6 5.8 117 288-406 39-170 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0043 1.5E-07 48.7 5.7 57 317-382 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0039 1.3E-07 49.0 5.3 57 347-406 11-68 (130)
165 2lz0_A Uncharacterized protein 44.6 64 0.0022 23.2 6.3 38 116-154 14-51 (100)
166 2lz0_A Uncharacterized protein 38.5 42 0.0014 24.1 4.4 12 340-351 39-50 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-55 Score=457.47 Aligned_cols=403 Identities=29% Similarity=0.392 Sum_probs=284.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEEcCCCCCccc---cc-------------
Q 040495 28 ANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGP---LS------------- 91 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~---~~------------- 91 (443)
..+.++|++||++||+++.||. .+++|..+.+||.|.||+|+ .++|+.|+++++.+.|. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 3446789999999999999988 88999988899999999998 38999999999998886 44
Q ss_pred ----------ccccCCCCCCEEeCCCCcCCCCCch--hhcCCCccCeEEccCCCCCCCCChhh-hcCCCCceeeccCCcc
Q 040495 92 ----------PYVGNLSFLRYINLANNGFLGEIPP--QIGRLNMLEGLVLSNNSFSGTIPTNL-SRRSNLIELSVDTNYL 158 (443)
Q Consensus 92 ----------~~~~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~~n~l 158 (443)
..+..+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 3566777788888888887777777 77788888888888887777776655 6777777777777777
Q ss_pred cccCCcc---ccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCc
Q 040495 159 VGEIPSA---IGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 159 ~~~~p~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
++..|.. +.++++|++|++++|.+++..|. ..+++|++|++++|.+.+..+.++.+++|++|++++|.+++.+|.
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence 7666655 56667777777777766654443 567777777777777766665577777777777777777777777
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCC-CCCCEEecccCcCccccchhhhCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNA-SRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
.+..+++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|++++..|..++.++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 7777777777777777776655543 45666666666666666666665553 6677777777766666666666666
Q ss_pred CCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc--------------------------
Q 040495 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS-------------------------- 368 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~-------------------------- 368 (443)
+|++|++++|.+++..+. ..+..+++|++|++++|++++.+|..+..+.
T Consensus 319 ~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp TCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred CccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 677777766666655551 2255666666666666666666665555432
Q ss_pred cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 369 STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
++|+.|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|..+.++++|
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 345555555555665666666666667777777777666666666667777777777777776777666655543
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.2e-53 Score=431.70 Aligned_cols=391 Identities=22% Similarity=0.290 Sum_probs=281.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC--------CCCCCCCCCCCCc---cceeeCCCCCcEEEEEcCCCCCcccccccccCCC
Q 040495 30 SNETDRLALLAIKLQLHDPLGV--------TSSWNNSMSLCQW---TGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLS 98 (443)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~ 98 (443)
....|+.||.+++.++.++... ..+|+...++|.| .||+|+.. ++|+.|+|+++++.|.+|+.+++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 3457999999999998755322 2379988899999 99999876 8999999999999999999999999
Q ss_pred CCCEEeCCCCcC--------------------------------------------------------------------
Q 040495 99 FLRYINLANNGF-------------------------------------------------------------------- 110 (443)
Q Consensus 99 ~L~~L~L~~n~~-------------------------------------------------------------------- 110 (443)
+|++|+|++|.+
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 999999998843
Q ss_pred ----------CCCCchhhcCCCccCeEEccCCCCCCC-----------------CChhhh--cCCCCceeeccCCccccc
Q 040495 111 ----------LGEIPPQIGRLNMLEGLVLSNNSFSGT-----------------IPTNLS--RRSNLIELSVDTNYLVGE 161 (443)
Q Consensus 111 ----------~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~p~~l~--~l~~L~~L~l~~n~l~~~ 161 (443)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 34 788899999999999999999985 899988 999999999999999999
Q ss_pred CCccccCCcCccEeeeeccc-cCc-cCCccccCC------CCCCEEEccCCcCCcccc--cccCCCCCCEEEcccccCCC
Q 040495 162 IPSAIGSLFKLERLFIFHNH-ITG-QLPASIGNL------SSLLAFDVRENILWGRID--SLVQLRNLRLLDIAFNHFSG 231 (443)
Q Consensus 162 ~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n~~~~ 231 (443)
+|..++++++|++|++++|. +++ .+|..++++ ++|++|++++|.++..+. .++.+++|++|++++|.+.|
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc
Confidence 99999999999999999998 888 788887776 899999999998885555 78888889999998888887
Q ss_pred CCCccccCCCCCcEEEcccCcCcccCChhhhcCCCC-CcEEeCCCCcCCccCCccCcCCC--CCCEEecccCcCccccch
Q 040495 232 MIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPN-LRQLSPNGNNFTGSIPVSLSNAS--RLEMIEFSRNQFSGRVSV 308 (443)
Q Consensus 232 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~ 308 (443)
.+| .+..+++|++|++++|.++ .+|..+. .+++ |++|++++|.++ .+|..+...+ +|++|++++|++++..|.
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred chh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 777 6666666777777776666 6665544 4555 666666666665 5555554433 555555555555555554
Q ss_pred hhh-------CCCCCCEEEccCCCCcccCCCchhhHhhhcCCC-------------------------------CCCEEE
Q 040495 309 DFS-------RLKNLSFLNMGINNLGTRTANELDFINLLANCS-------------------------------KLERLY 350 (443)
Q Consensus 309 ~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-------------------------------~L~~L~ 350 (443)
.+. .+++|++|++++|.++...+ ..+..++ +|++|+
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPK------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCT------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCH------HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEE
Confidence 444 44455555555555553322 2233334 555555
Q ss_pred ccCCcCcccCChhHh--hhccCCCEEeccCCcCeecCchhhhcCCCCCeEeC------cCCcCcccCchhhcCCCCCCEE
Q 040495 351 FNRNRFQGVLPQSMA--NFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTM------DSNLFTGTIPPVIGELKNLQLL 422 (443)
Q Consensus 351 l~~n~l~~~~p~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L------~~n~~~~~~p~~~~~l~~L~~L 422 (443)
+++|+++ .+|..+. . .++|+.|++++|++++ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|++|
T Consensus 495 Ls~N~l~-~lp~~~~~~~-l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATT-LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp CCSSCCC-BCCGGGSTTT-CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred CcCCcCC-ccChhhhhcc-CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 5555555 4554443 3 2455555555555554 5555555555555555 3344555555555555555555
Q ss_pred EccCCcCcccCCcc
Q 040495 423 DLGGNFLQGSIPSS 436 (443)
Q Consensus 423 ~l~~n~l~~~~p~~ 436 (443)
++++|++ +.+|..
T Consensus 572 ~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 572 QIGSNDI-RKVNEK 584 (636)
T ss_dssp ECCSSCC-CBCCSC
T ss_pred ECCCCcC-CccCHh
Confidence 5555555 455544
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-50 Score=423.11 Aligned_cols=395 Identities=21% Similarity=0.259 Sum_probs=294.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC-----CC--CCc------------cceeeCCCCCcEEEEEcCCCCCcc
Q 040495 28 ANSNETDRLALLAIKLQLHDPLGVTSSWNNSM-----SL--CQW------------TGVTCGRRHQRVTRLDLRNQSIGG 88 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~l~~~~~~~ 88 (443)
+.+..+|+.||++||.++.+| +|+.+. ++ |.| .||.|+.. ++|+.|+|+++++.|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKG 337 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEE
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCC
Confidence 345668999999999999877 575443 55 999 99999874 899999999999999
Q ss_pred cccccccCCCCCCEEeC-CCCcCCCC------------------------------------------------------
Q 040495 89 PLSPYVGNLSFLRYINL-ANNGFLGE------------------------------------------------------ 113 (443)
Q Consensus 89 ~~~~~~~~l~~L~~L~L-~~n~~~~~------------------------------------------------------ 113 (443)
.+|+.++++++|++|+| ++|.+.|.
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 99999999999999999 77754333
Q ss_pred ----------------------CchhhcCCCccCeEEccCCCCCC-----------------CCChhhh--cCCCCceee
Q 040495 114 ----------------------IPPQIGRLNMLEGLVLSNNSFSG-----------------TIPTNLS--RRSNLIELS 152 (443)
Q Consensus 114 ----------------------~~~~l~~l~~L~~L~l~~n~~~~-----------------~~p~~l~--~l~~L~~L~ 152 (443)
+|..++++++|++|++++|.+++ .+|..++ ++++|++|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 78889999999999999999998 3888877 999999999
Q ss_pred ccCCcccccCCccccCCcCccEeeeeccc-cCc-cCCccccCCC-------CCCEEEccCCcCCcccc--cccCCCCCCE
Q 040495 153 VDTNYLVGEIPSAIGSLFKLERLFIFHNH-ITG-QLPASIGNLS-------SLLAFDVRENILWGRID--SLVQLRNLRL 221 (443)
Q Consensus 153 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~--~l~~l~~L~~ 221 (443)
+++|.+.+.+|..++++++|++|++++|+ +++ .+|..+++++ +|++|++++|.+...+. .+..+++|+.
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCE
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCE
Confidence 99999999999999999999999999998 887 7777666554 88888888888885445 6888888888
Q ss_pred EEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCC-CcEEeCCCCcCCccCCccCcCCCC--CCEEecc
Q 040495 222 LDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPN-LRQLSPNGNNFTGSIPVSLSNASR--LEMIEFS 298 (443)
Q Consensus 222 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~~~--L~~L~l~ 298 (443)
|++++|.+. .+| .+..+++|++|++++|.++ .+|..+. .+++ |++|++++|.++ .+|..+...+. |+.|+++
T Consensus 578 L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 578 LDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp EECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred EECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 888888887 666 7778888888888888887 7776655 5666 777777777776 56655554432 5555555
Q ss_pred cCcCccccc----------------------------hh-hhCCCCCCEEEccCCCCcccCCCchhhH-hhhcCCCCCCE
Q 040495 299 RNQFSGRVS----------------------------VD-FSRLKNLSFLNMGINNLGTRTANELDFI-NLLANCSKLER 348 (443)
Q Consensus 299 ~n~l~~~~~----------------------------~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~~~~L~~ 348 (443)
+|++.+.+| .. +..+++|+.|++++|.++.......... ..+.++++|++
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCE
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccE
Confidence 555544332 22 2355666666666666663322110000 00122336777
Q ss_pred EEccCCcCcccCChhHh--hhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcC------CcCcccCchhhcCCCCCC
Q 040495 349 LYFNRNRFQGVLPQSMA--NFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDS------NLFTGTIPPVIGELKNLQ 420 (443)
Q Consensus 349 L~l~~n~l~~~~p~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~------n~~~~~~p~~~~~l~~L~ 420 (443)
|++++|+++ .+|..+. . .++|+.|+|++|++++ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+
T Consensus 733 L~Ls~N~L~-~lp~~l~~~~-l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 733 IDLRFNKLT-SLSDDFRATT-LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp EECCSSCCC-CCCGGGSTTT-CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EECCCCCCc-cchHHhhhcc-CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 777777777 6666665 4 3677777777777775 677777777777777755 666677777777777777
Q ss_pred EEEccCCcCcccCCccc
Q 040495 421 LLDLGGNFLQGSIPSSL 437 (443)
Q Consensus 421 ~L~l~~n~l~~~~p~~~ 437 (443)
+|+|++|++ +.+|..+
T Consensus 810 ~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 810 QLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp EEECCSSCC-CBCCSCC
T ss_pred EEECCCCCC-CccCHhh
Confidence 777777777 5777654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-49 Score=415.89 Aligned_cols=360 Identities=30% Similarity=0.498 Sum_probs=280.5
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchh-hcCCCccCeEEccCCCCCCCCChhhhcCC-CCceee
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQ-IGRLNMLEGLVLSNNSFSGTIPTNLSRRS-NLIELS 152 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~ 152 (443)
.++.|++++|.+.+.+|..+..+++|++|++++|.+++.+|.. +.++++|++|++++|.+++.+|..+.+++ +|++|+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 4555555555555555555555555555555555555555544 55555666666666655555555555554 566666
Q ss_pred ccCCcccccCCccccC--CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccC
Q 040495 153 VDTNYLVGEIPSAIGS--LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHF 229 (443)
Q Consensus 153 l~~n~l~~~~p~~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~ 229 (443)
+++|.+++.+|..+.. +++|++|++++|.+++.+|..+.++++|++|++++|.+.+.. ..+..+++|++|++++|.+
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence 6666666555655554 667888888888887778888888888888888888887665 6778888888888888888
Q ss_pred CCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchh
Q 040495 230 SGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 230 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 309 (443)
.+.+|..+..+++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 888888888888899999999988888887766 7889999999999998888888888999999999999999888888
Q ss_pred hhCCCCCCEEEccCCCCcccCCCchhh-----------------------------------------------------
Q 040495 310 FSRLKNLSFLNMGINNLGTRTANELDF----------------------------------------------------- 336 (443)
Q Consensus 310 ~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------- 336 (443)
+..+++|+.|++++|.+++..|..+..
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 889999999999999888777643210
Q ss_pred -----------HhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcC
Q 040495 337 -----------INLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLF 405 (443)
Q Consensus 337 -----------~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~ 405 (443)
+..+..+++|++|++++|+++|.+|..+..+ +.|+.|+|++|+++|.+|..++.+++|+.|+|++|++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc-ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 0124456788999999999999999988885 7899999999999999999999999999999999999
Q ss_pred cccCchhhcCCCCCCEEEccCCcCcccCCcc
Q 040495 406 TGTIPPVIGELKNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 406 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
+|.+|+.+..+++|++||+++|+++|.||+.
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999999999963
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.4e-44 Score=366.33 Aligned_cols=332 Identities=22% Similarity=0.259 Sum_probs=255.8
Q ss_pred ccccccCCCCCCEEeCCCCcCCCC-----------------Cchhhc--CCCccCeEEccCCCCCCCCChhhhcCCCCce
Q 040495 90 LSPYVGNLSFLRYINLANNGFLGE-----------------IPPQIG--RLNMLEGLVLSNNSFSGTIPTNLSRRSNLIE 150 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~l~--~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 150 (443)
+|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 677788889999999999988875 888888 8999999999999888888988888999999
Q ss_pred eeccCCc-ccc-cCCccccCC------cCccEeeeeccccCccCCc--cccCCCCCCEEEccCCcCCcccccccCCCCCC
Q 040495 151 LSVDTNY-LVG-EIPSAIGSL------FKLERLFIFHNHITGQLPA--SIGNLSSLLAFDVRENILWGRIDSLVQLRNLR 220 (443)
Q Consensus 151 L~l~~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~ 220 (443)
|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.+.+..+.+..+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 9999988 887 788877765 88888888888888 7787 78888888888888888875555667777777
Q ss_pred EEEcccccCCCCCCccccCCCC-CcEEEcccCcCcccCChhhhcCC--CCCcEEeCCCCcCCccCCccCc-------CCC
Q 040495 221 LLDIAFNHFSGMIPPPIFNISS-LEVISLSENRFTGSLPVDAGVNL--PNLRQLSPNGNNFTGSIPVSLS-------NAS 290 (443)
Q Consensus 221 ~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~-------~~~ 290 (443)
+|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+. .. ++|++|++++|.+++..|..+. .++
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh-hcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 7777777777 66667777777 777777777776 6665443 22 3677777777777666666665 555
Q ss_pred CCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCch------------------------hhHhhhc--CCC
Q 040495 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL------------------------DFINLLA--NCS 344 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------~~~~~~~--~~~ 344 (443)
+|++|++++|++++..+..+..+++|++|++++|.++......+ .++..+. .++
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCC
Confidence 66666666666664333334445555555555555552222110 0113454 899
Q ss_pred CCCEEEccCCcCcccCChhHhhhccCCCEEec------cCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCC
Q 040495 345 KLERLYFNRNRFQGVLPQSMANFSSTIKQIAM------GRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKN 418 (443)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L------~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~ 418 (443)
+|++|++++|++++ +|..+..+ ++|+.|++ ++|++.+.+|..+..+++|++|++++|.+ +.+|..+. ++
T Consensus 514 ~L~~L~Ls~N~l~~-ip~~~~~l-~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~ 588 (636)
T 4eco_A 514 YLVGIDLSYNSFSK-FPTQPLNS-STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PN 588 (636)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGC-SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TT
T ss_pred CcCEEECCCCCCCC-cChhhhcC-CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--Cc
Confidence 99999999999996 89988884 89999999 56888999999999999999999999999 58998766 79
Q ss_pred CCEEEccCCcCc
Q 040495 419 LQLLDLGGNFLQ 430 (443)
Q Consensus 419 L~~L~l~~n~l~ 430 (443)
|++||+++|++.
T Consensus 589 L~~L~Ls~N~l~ 600 (636)
T 4eco_A 589 ISVLDIKDNPNI 600 (636)
T ss_dssp CCEEECCSCTTC
T ss_pred CCEEECcCCCCc
Confidence 999999999776
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-42 Score=353.70 Aligned_cols=360 Identities=19% Similarity=0.204 Sum_probs=252.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..+.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57899999999999888888999999999999999998888889999999999999999999888888999999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCC--EEEcccccCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLR--LLDIAFNHFS 230 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~--~L~l~~n~~~ 230 (443)
++|.+++..|..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+.. ..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 999998666777888999999999999988644344555888888888888877665 5566666666 6666666655
Q ss_pred CCCC---------------------------------------------------------------------------c
Q 040495 231 GMIP---------------------------------------------------------------------------P 235 (443)
Q Consensus 231 ~~~~---------------------------------------------------------------------------~ 235 (443)
+..| .
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 4333 3
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccch-hhhCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV-DFSRLK 314 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~ 314 (443)
.+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 3444555555555555555 4554443 455555555555555544455555555555555555555544433 255555
Q ss_pred CCCEEEccCCCCcccC--CCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCch-hhhc
Q 040495 315 NLSFLNMGINNLGTRT--ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP-GIRS 391 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~ 391 (443)
+|++|++++|.+++.. + ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..|. .+..
T Consensus 351 ~L~~L~l~~n~l~~~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCN------LQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TCCEEECCSSCCCEEEEST------TTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTTCCTTTT
T ss_pred cCCEEECCCCccccccCcc------hhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCcccchhhhC
Confidence 6666666666555443 2 346667777777777777776656655553 6777777777777765543 3677
Q ss_pred CCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCccc-C--CccccCCCC
Q 040495 392 HANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGS-I--PSSLGNLTL 442 (443)
Q Consensus 392 ~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~--p~~~~~l~~ 442 (443)
+++|++|++++|.+.+..|..+..+++|++|++++|++++. + +..+.++++
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 77777777777777766777777777777777777777652 2 234555544
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.9e-43 Score=344.00 Aligned_cols=354 Identities=21% Similarity=0.214 Sum_probs=307.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCC-chhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceee
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEI-PPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELS 152 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 152 (443)
.+++.|++++|.+.+..+..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57999999999999988899999999999999999987655 56799999999999999999988899999999999999
Q ss_pred ccCCcccccCCcc--ccCCcCccEeeeeccccCccCCcc-ccCCCCCCEEEccCCcCCccc-ccccCC--CCCCEEEccc
Q 040495 153 VDTNYLVGEIPSA--IGSLFKLERLFIFHNHITGQLPAS-IGNLSSLLAFDVRENILWGRI-DSLVQL--RNLRLLDIAF 226 (443)
Q Consensus 153 l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~-~~l~~l--~~L~~L~l~~ 226 (443)
+++|.+++..|.. ++.+++|++|++++|.+++..|.. +.++++|++|++++|.+.+.. ..+..+ .+++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 899999999999999999887776 889999999999999988776 555554 7899999999
Q ss_pred ccCCCCCCcc--------ccCCCCCcEEEcccCcCcccCChhhhc--CCCCCcEEeCCCCcCCccC----------CccC
Q 040495 227 NHFSGMIPPP--------IFNISSLEVISLSENRFTGSLPVDAGV--NLPNLRQLSPNGNNFTGSI----------PVSL 286 (443)
Q Consensus 227 n~~~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~----------~~~l 286 (443)
|.+.+..+.. +..+++|++|++++|.+++..|..+.. ..++++.|++++|...+.. +..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 9998654433 346689999999999999877766542 2389999999988654321 1122
Q ss_pred c--CCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhH
Q 040495 287 S--NASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSM 364 (443)
Q Consensus 287 ~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 364 (443)
. ..++|++|++++|++.+..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..+
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD------NAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh------hHhcCcccCCEEECCCCccCCcChhHh
Confidence 2 23689999999999999999999999999999999999999877 568899999999999999997777777
Q ss_pred hhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCC
Q 040495 365 ANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 365 ~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
..+ ++|+.|++++|++++..|..+..+++|++|++++|++++..++.+..+++|++|++++|++++.+|
T Consensus 344 ~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 344 ENL-DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCc-ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 764 899999999999998889999999999999999999996555677899999999999999999988
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-42 Score=352.44 Aligned_cols=363 Identities=19% Similarity=0.189 Sum_probs=218.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..|..|.++++|++|++++|.+++..|..++++++|++|++++|.+++..|..+.++++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 46777777777777766777777777777777777777666777777777777777777777555566667777777777
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCC--EEEccCCcCCcc----------------------
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLL--AFDVRENILWGR---------------------- 209 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~l~~n~l~~~---------------------- 209 (443)
++|.+.+..++.+..+++|++|++++|.+++..|..+..+++|+ .+++++|.+.+.
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 77776643223333366666666666666554444455555444 444444432211
Q ss_pred -----------------------------------------------------c-ccccCCCCCCEEEcccccCCCCCCc
Q 040495 210 -----------------------------------------------------I-DSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 210 -----------------------------------------------------~-~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
. ..+..+++|++|++++|.++ .+|.
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh
Confidence 1 11344455666666666555 4455
Q ss_pred cccCCCCCcEEEcccCcCc------------------------ccCChhhhcCCCCCcEEeCCCCcCCccC--CccCcCC
Q 040495 236 PIFNISSLEVISLSENRFT------------------------GSLPVDAGVNLPNLRQLSPNGNNFTGSI--PVSLSNA 289 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~------------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~ 289 (443)
.+..+++|++|++++|.++ +.+|...+..+++|++|++++|.+++.. +..+..+
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 5555555555555555554 3333332334445555555555554333 4445555
Q ss_pred CCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhcc
Q 040495 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSS 369 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 369 (443)
++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+. ..+..+++|++|++++|.+++..|..+..+ +
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~ 449 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ-----SPFQNLHLLKVLNLSHSLLDISSEQLFDGL-P 449 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC-----CTTTTCTTCCEEECTTCCCBTTCTTTTTTC-T
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc-----hhhhCcccCCEEECCCCccCCcCHHHHhCC-C
Confidence 5555555555555555555555556666666666655544331 235566677777777777765555555553 6
Q ss_pred CCCEEeccCCcCeec---CchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 370 TIKQIAMGRNRISGT---IPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 370 ~L~~L~L~~n~l~~~---~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
+|+.|++++|++++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|+.+.+++.|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 677777777776652 22456667777777777777776666677777777777777777777777666666543
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.1e-43 Score=331.00 Aligned_cols=292 Identities=29% Similarity=0.478 Sum_probs=223.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC--ccceeeCCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCE
Q 040495 29 NSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQ--WTGVTCGRRH--QRVTRLDLRNQSIGG--PLSPYVGNLSFLRY 102 (443)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~~~~--~~~~~~~~l~~L~~ 102 (443)
.|.++|++||++||.++.+|. .+.+|..+.+||. |.||.|+... ++|+.|+++++.+.+ .+|..+.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 588999999999999998886 7889988888998 9999998654 789999999999999 89999999999999
Q ss_pred EeCCC-CcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccc
Q 040495 103 INLAN-NGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH 181 (443)
Q Consensus 103 L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 181 (443)
|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 99999999999999999999999999998999999999999999999999998899999999999999999999
Q ss_pred cCccCCccccCCC-CCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCCh
Q 040495 182 ITGQLPASIGNLS-SLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 182 l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 259 (443)
+++.+|..+..++ +|++|++++|.+.+.. ..+..++ |++|++++|.+.+..|..+..+++|++|++++|.+++.+|.
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 9988888888876 7777777777666444 4455544 66666666666665566666666666666666666544433
Q ss_pred hhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCC
Q 040495 260 DAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINN 325 (443)
Q Consensus 260 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
+. .+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.. ..+++|+.+++++|.
T Consensus 240 -~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 -VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp -CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred -cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 22 4455555555555555555555555555555555555555555443 444445555554443
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.9e-42 Score=352.88 Aligned_cols=357 Identities=20% Similarity=0.228 Sum_probs=251.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 57889999999988877778888999999999999888777888888999999999999888777888888999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCc-cCCccccCCCCCCEEEccCCcCCccc-cccc-----------------
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLV----------------- 214 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~----------------- 214 (443)
++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.+.. ..++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9998886666778888899999999988875 56888888888888888888665432 1111
Q ss_pred --------------------------------------------------------------------------------
Q 040495 215 -------------------------------------------------------------------------------- 214 (443)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (443)
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence
Q ss_pred ---------------------------------CCCCCCEEEcccccCCCCCCc--------------------cccCCC
Q 040495 215 ---------------------------------QLRNLRLLDIAFNHFSGMIPP--------------------PIFNIS 241 (443)
Q Consensus 215 ---------------------------------~l~~L~~L~l~~n~~~~~~~~--------------------~l~~l~ 241 (443)
.+++|++|++++|.+ +.+|. .+..++
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred ccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCC
Confidence 111233333333333 22221 112233
Q ss_pred CCcEEEcccCcCccc--CChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccc-hhhhCCCCCCE
Q 040495 242 SLEVISLSENRFTGS--LPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLSF 318 (443)
Q Consensus 242 ~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 318 (443)
+|++|++++|.+++. +|..+. .+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|++
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 344444444444322 133333 4555666666666555 344566666777777777777766655 45667777777
Q ss_pred EEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCccc-CChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCe
Q 040495 319 LNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV-LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNW 397 (443)
Q Consensus 319 L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 397 (443)
|++++|.+++..+ ..+..+++|++|++++|++++. +|..+..+ ++|+.|++++|++++..|..+..+++|++
T Consensus 429 L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 429 LDISYTNTKIDFD------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp EECTTSCCEECCT------TTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred EECcCCCCCccch------hhhcCCCCCCEEECCCCcCCCcchHHhhccC-CCCCEEECCCCcCCccChhhhcccccCCE
Confidence 7777777776665 4567777888888888887763 56555553 77888888888888777777888888888
Q ss_pred EeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCC
Q 040495 398 LTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 398 L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 441 (443)
|++++|++++..|..+.++++|++|++++|+++ .+|..+.+++
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 888888888777778888888888888888887 6776666553
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-42 Score=346.80 Aligned_cols=363 Identities=19% Similarity=0.197 Sum_probs=255.7
Q ss_pred CCCccceeeCCC-----------CCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEc
Q 040495 61 LCQWTGVTCGRR-----------HQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVL 129 (443)
Q Consensus 61 ~c~w~gv~c~~~-----------~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 129 (443)
.|.|.|+ |+.. ..++++|++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 3777776 6432 147899999999998888888999999999999999999888888999999999999
Q ss_pred cCCCCCCCCChhhhcCCCCceeeccCCcccc-cCCccccCCcCccEeeeeccccCccCC-ccccCCCCCCEEEccCCcCC
Q 040495 130 SNNSFSGTIPTNLSRRSNLIELSVDTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 130 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~ 207 (443)
++|.+++..|..+.++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999997777779999999999999999885 456778888999999999988443444 57888888888888888776
Q ss_pred ccc-ccc------------------------cCCCCCCEEEcccccCCCCC--Cccc-cC--------------------
Q 040495 208 GRI-DSL------------------------VQLRNLRLLDIAFNHFSGMI--PPPI-FN-------------------- 239 (443)
Q Consensus 208 ~~~-~~l------------------------~~l~~L~~L~l~~n~~~~~~--~~~l-~~-------------------- 239 (443)
+.. ..+ ..+++|++|++++|.+.+.. +..+ ..
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 543 333 23677888888888776531 1000 00
Q ss_pred -------------------------------------------------------------------CCCCcEEEcccCc
Q 040495 240 -------------------------------------------------------------------ISSLEVISLSENR 252 (443)
Q Consensus 240 -------------------------------------------------------------------l~~L~~L~l~~n~ 252 (443)
.++|++|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 1245555555555
Q ss_pred CcccCChhhhcCCCCCcEEeCCCCcCCccCCc---cCcCCCCCCEEecccCcCccccc--hhhhCCCCCCEEEccCCCCc
Q 040495 253 FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPV---SLSNASRLEMIEFSRNQFSGRVS--VDFSRLKNLSFLNMGINNLG 327 (443)
Q Consensus 253 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~l~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~ 327 (443)
+. .+|..++..+++|++|++++|++++.+|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|.++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 54 56666654678888888888888876543 36777888888888888876543 45778888888888888887
Q ss_pred ccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcc
Q 040495 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG 407 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~ 407 (443)
.. | ..+..+++|++|++++|+++ .+|..+ +++|+.|++++|++++.+ ..+++|++|++++|+++
T Consensus 401 ~l-p------~~~~~~~~L~~L~Ls~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 401 PM-P------DSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK- 464 (549)
T ss_dssp CC-C------SCCCCCTTCCEEECTTSCCS-CCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-
T ss_pred cC-C------hhhcccccccEEECCCCCcc-cccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-
Confidence 43 3 23556677777777777776 444332 235666666666655432 34556666666666665
Q ss_pred cCchhhcCCCCCCEEEccCCcCcccCCccccCCCC
Q 040495 408 TIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 408 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 442 (443)
.+|. ...+++|++|++++|++++..|+.+.++++
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTT
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcc
Confidence 5554 344566666666666666555555555443
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-41 Score=355.19 Aligned_cols=329 Identities=20% Similarity=0.259 Sum_probs=256.9
Q ss_pred ccccccCCCCCCEEeCCCCcCCC-----------------CCchhhc--CCCccCeEEccCCCCCCCCChhhhcCCCCce
Q 040495 90 LSPYVGNLSFLRYINLANNGFLG-----------------EIPPQIG--RLNMLEGLVLSNNSFSGTIPTNLSRRSNLIE 150 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 150 (443)
+|..+.++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66778888888888888888887 3788877 8888888888888888888888888888888
Q ss_pred eeccCCc-ccc-cCCccccCCc-------CccEeeeeccccCccCCc--cccCCCCCCEEEccCCcCCcccccccCCCCC
Q 040495 151 LSVDTNY-LVG-EIPSAIGSLF-------KLERLFIFHNHITGQLPA--SIGNLSSLLAFDVRENILWGRIDSLVQLRNL 219 (443)
Q Consensus 151 L~l~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L 219 (443)
|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .+.++++|++|++++|.+... +.+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l-p~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHL-EAFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBC-CCCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccc-hhhcCCCcc
Confidence 8888887 777 6777665554 8888888888888 7777 788888888888888877733 467777777
Q ss_pred CEEEcccccCCCCCCccccCCCC-CcEEEcccCcCcccCChhhhc------------------------------CCCCC
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISS-LEVISLSENRFTGSLPVDAGV------------------------------NLPNL 268 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~------------------------------~~~~L 268 (443)
+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+.. ..++|
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 77777777777 66766777776 777777777766 55543220 11245
Q ss_pred cEEeCCCCcCCccCCccC-cCCCCCCEEecccCcCccccchhhhC--------CCCCCEEEccCCCCcccCCCchhhHhh
Q 040495 269 RQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSR--------LKNLSFLNMGINNLGTRTANELDFINL 339 (443)
Q Consensus 269 ~~L~L~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~~ 339 (443)
+.|++++|.++ .+|..+ ..+++|+.|++++|+++ .+|..+.. +++|+.|++++|.++. .| ..
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp------~~ 746 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LS------DD 746 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CC------GG
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-ch------HH
Confidence 55555555555 344433 47889999999999998 55554332 2399999999999994 44 34
Q ss_pred hc--CCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccC------CcCeecCchhhhcCCCCCeEeCcCCcCcccCch
Q 040495 340 LA--NCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGR------NRISGTIPPGIRSHANLNWLTMDSNLFTGTIPP 411 (443)
Q Consensus 340 ~~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~------n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~ 411 (443)
+. .+++|+.|++++|++++ +|..+..+ ++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|.
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L-~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNS-SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGC-TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcC-CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 55 89999999999999996 89888875 8999999976 888999999999999999999999999 69999
Q ss_pred hhcCCCCCCEEEccCCcCcccCCcc
Q 040495 412 VIGELKNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
.+. ++|+.|||++|++...-+..
T Consensus 824 ~l~--~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp CCC--SSSCEEECCSCTTCEEECGG
T ss_pred hhc--CCCCEEECCCCCCCccChHH
Confidence 866 69999999999987544443
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-40 Score=341.81 Aligned_cols=367 Identities=20% Similarity=0.177 Sum_probs=216.7
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.++++|++++|.+.+..+..+.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57888999988888877777888888999999888888878888888888888888888888555556888888888888
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccc--cCCCCCCEEEcccccCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSL--VQLRNLRLLDIAFNHFS 230 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l--~~l~~L~~L~l~~n~~~ 230 (443)
++|.+++..|..++++++|++|++++|.+++..|..+.++++|++|++++|.+++.. ..+ ..+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 888888666677888888888888888888777777788888888888888776554 222 23355566666555554
Q ss_pred CCCCcc---------------------------------------------------ccCCC--CCcEEEcccCcCcccC
Q 040495 231 GMIPPP---------------------------------------------------IFNIS--SLEVISLSENRFTGSL 257 (443)
Q Consensus 231 ~~~~~~---------------------------------------------------l~~l~--~L~~L~l~~n~l~~~~ 257 (443)
+..|.. +..++ +|++|++++|.+++..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 433332 22222 2555555555555333
Q ss_pred ChhhhcCCCCCcEEeCCCCcCCccCCcc---------------------------------CcCCCCCCEEecccCcCcc
Q 040495 258 PVDAGVNLPNLRQLSPNGNNFTGSIPVS---------------------------------LSNASRLEMIEFSRNQFSG 304 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------------------------------l~~~~~L~~L~l~~n~l~~ 304 (443)
|..+. .+++|++|++++|++++..|.. +..+++|++|++++|++++
T Consensus 265 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 265 NDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred ccccc-CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 33222 4555555555555554443332 3334444455555555555
Q ss_pred ccchhhhCCCCCCEEEccCCCCcccCCCc--h--------------------hhHhhhcCCCCCCEEEccCCcCcccCCh
Q 040495 305 RVSVDFSRLKNLSFLNMGINNLGTRTANE--L--------------------DFINLLANCSKLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 305 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~--------------------~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (443)
..+..+..+++|++|++++|.+....... + ..+..+..+++|++|++++|++++.+|.
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 44444555555555555544322110000 0 0012345555666666666666555543
Q ss_pred hHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc--ccCchhhcCCCCCCEEEccCCcCcccCCccccCC
Q 040495 363 SMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT--GTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 363 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~--~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
..+...++|+.|++++|++++..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..|.++
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 22222355555555555555433333333333444444333332 3344445555555555555555554433444443
Q ss_pred C
Q 040495 441 T 441 (443)
Q Consensus 441 ~ 441 (443)
+
T Consensus 504 ~ 504 (680)
T 1ziw_A 504 E 504 (680)
T ss_dssp T
T ss_pred c
Confidence 3
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-41 Score=342.25 Aligned_cols=359 Identities=20% Similarity=0.218 Sum_probs=204.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45677777777777666666777777777777777777666666777777777777777777666667777777777777
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCc-cCCccccCCCCCCEEEccCCcCCccc-cccc-----------------
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLV----------------- 214 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~----------------- 214 (443)
++|.+++..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+.+.. ..++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7777764434456677777777777777665 35666777777777777766554332 1122
Q ss_pred --------------------------------------------------------------------------------
Q 040495 215 -------------------------------------------------------------------------------- 214 (443)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (443)
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence
Q ss_pred ------------CCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhh-------------------c
Q 040495 215 ------------QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG-------------------V 263 (443)
Q Consensus 215 ------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-------------------~ 263 (443)
.+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.... .
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccc
Confidence 2344555555555554 344444443 4444444444443 3332100 1
Q ss_pred CCCCCcEEeCCCCcCCccC--CccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhc
Q 040495 264 NLPNLRQLSPNGNNFTGSI--PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLA 341 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 341 (443)
.+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+. ..+.
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-----~~~~ 418 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-----SVFL 418 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS-----CTTT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch-----hhhh
Confidence 3445555555555554322 34444555555555555555543333 45555555555555555444321 2344
Q ss_pred CCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCe-ecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCC
Q 040495 342 NCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRIS-GTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQ 420 (443)
Q Consensus 342 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 420 (443)
.+++|++|++++|.+++..|..+..+ ++|+.|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCEEeCcCCcccccchhhhhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 55555555665555554444444442 55555555555554 34555555555555555555555555555555555555
Q ss_pred EEEccCCcCcccCCccccCCCC
Q 040495 421 LLDLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 421 ~L~l~~n~l~~~~p~~~~~l~~ 442 (443)
+|++++|++++..|..|.++++
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTT
T ss_pred EEeCCCCcCCCCCHHHhhcccC
Confidence 5555555555554444544443
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=333.76 Aligned_cols=343 Identities=19% Similarity=0.197 Sum_probs=276.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57899999999999888888999999999999999999878889999999999999999998 66766 8899999999
Q ss_pred cCCcccc-cCCccccCCcCccEeeeeccccCccCCccccCCCCC--CEEEccCCcC--Cccc-ccccC------------
Q 040495 154 DTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL--LAFDVRENIL--WGRI-DSLVQ------------ 215 (443)
Q Consensus 154 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~-~~l~~------------ 215 (443)
++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+.. ..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999986 578899999999999999999885 456777788 9999999877 2222 22221
Q ss_pred -----------------------------------------------------------------------CCCCCEEEc
Q 040495 216 -----------------------------------------------------------------------LRNLRLLDI 224 (443)
Q Consensus 216 -----------------------------------------------------------------------l~~L~~L~l 224 (443)
.++|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 126777888
Q ss_pred ccccCCCCCCccc-----cCCCCCcEEEcccCcCcccCCh-hh------------------------hcCCCCCcEEeCC
Q 040495 225 AFNHFSGMIPPPI-----FNISSLEVISLSENRFTGSLPV-DA------------------------GVNLPNLRQLSPN 274 (443)
Q Consensus 225 ~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~-~~------------------------~~~~~~L~~L~L~ 274 (443)
++|.+.+.+|..+ ..+++|+.+++++|.+ .+|. .+ ...+++|++|+++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 8888888888877 6677777777766665 3441 11 0367888889999
Q ss_pred CCcCCccCCccCcCCCCCCEEecccCcCcc--ccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEcc
Q 040495 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSG--RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352 (443)
Q Consensus 275 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 352 (443)
+|++++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++..+. ..+..+++|++|+++
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-----~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-----GDCSWTKSLLSLNMS 407 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-----CSCCCCTTCCEEECC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc-----chhccCccCCEEECc
Confidence 988888788888888899999999998886 5566788888999999999888874431 346777889999999
Q ss_pred CCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchh-hcCCCCCCEEEccCCcCcc
Q 040495 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPV-IGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 353 ~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~ 431 (443)
+|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++
T Consensus 408 ~N~l~~~~~~~l~---~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 408 SNILTDTIFRCLP---PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SSCCCGGGGGSCC---TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcchhhhhc---ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 9988877766542 57899999999888 78888888889999999999888 67765 8888889999999998887
Q ss_pred cCC
Q 040495 432 SIP 434 (443)
Q Consensus 432 ~~p 434 (443)
..+
T Consensus 483 ~c~ 485 (520)
T 2z7x_B 483 SCP 485 (520)
T ss_dssp CHH
T ss_pred cCC
Confidence 554
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-40 Score=337.81 Aligned_cols=351 Identities=17% Similarity=0.146 Sum_probs=270.2
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 45677777777776666666677777777777777776666666777777777777777666555556666666666666
Q ss_pred cCCcccc-cCCccccCCcCccEeeeeccccCccCCcc-------------------------------------------
Q 040495 154 DTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLPAS------------------------------------------- 189 (443)
Q Consensus 154 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~------------------------------------------- 189 (443)
++|.+.+ .+|..++++++|++|++++|.+++..+..
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 6666654 45666666666666666666555433221
Q ss_pred --------------------------------------------------------------------------------
Q 040495 190 -------------------------------------------------------------------------------- 189 (443)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (443)
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc
Confidence
Q ss_pred -------ccCCCCCCEEEccCCcCCccc--------------------ccccCCCCCCEEEcccccCCCC--CCccccCC
Q 040495 190 -------IGNLSSLLAFDVRENILWGRI--------------------DSLVQLRNLRLLDIAFNHFSGM--IPPPIFNI 240 (443)
Q Consensus 190 -------l~~l~~L~~L~l~~n~l~~~~--------------------~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l 240 (443)
+..+++|++|++++|.+...+ ..+..+++|++|++++|.+++. .+..+..+
T Consensus 296 ~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred cchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 112223444444444331111 1344567788888888877754 47788899
Q ss_pred CCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCC-ccCcCCCCCCEEecccCcCccccchhhhCCCCCCEE
Q 040495 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFL 319 (443)
Q Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
++|++|++++|.++ .+|..+. .+++|++|++++|++.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 376 ~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp SCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 99999999999988 5665554 79999999999999998777 688999999999999999999999999999999999
Q ss_pred EccCCCCccc-CCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeE
Q 040495 320 NMGINNLGTR-TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWL 398 (443)
Q Consensus 320 ~l~~n~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 398 (443)
++++|.+++. .+ ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..|..+..+++|++|
T Consensus 454 ~l~~n~l~~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 454 KMAGNSFKDNTLS------NVFANTTNLTFLDLSKCQLEQISWGVFDTL-HRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp ECTTCEEGGGEEC------SCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred ECCCCcCCCcchH------HhhccCCCCCEEECCCCcCCccChhhhccc-ccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 9999999884 45 568899999999999999998888878774 899999999999999889999999999999
Q ss_pred eCcCCcCcccCchhhcCCC-CCCEEEccCCcCcccCC
Q 040495 399 TMDSNLFTGTIPPVIGELK-NLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 399 ~L~~n~~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p 434 (443)
++++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999 8898888887 59999999999987655
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=351.16 Aligned_cols=288 Identities=20% Similarity=0.197 Sum_probs=197.9
Q ss_pred CCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCC-chhhcCCCccCeEEccCCCCCCCCCh
Q 040495 62 CQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEI-PPQIGRLNMLEGLVLSNNSFSGTIPT 140 (443)
Q Consensus 62 c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~ 140 (443)
|.|..|.+ ...+++.|++++|.+++..+..+.++++|++|++++|...+.+ |..|+++++|++|++++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666665 3368999999999999988899999999999999999766665 78899999999999999999988899
Q ss_pred hhhcCCCCceeeccCCcccccCCcc--ccCCcCccEeeeeccccCccCC-ccccCCCCCCEEEccCCcCCccc-ccccCC
Q 040495 141 NLSRRSNLIELSVDTNYLVGEIPSA--IGSLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENILWGRI-DSLVQL 216 (443)
Q Consensus 141 ~l~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l 216 (443)
.|.++++|++|++++|.+++..|.. ++++++|++|++++|.+++..+ ..++++++|++|++++|.+.+.. ..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999998766665 8899999999999999987655 57899999999999999887654 444444
Q ss_pred --CCCCEEEcccccCCCCCCccccCCCC------CcEEEcccCcCcccCChhh---------------------------
Q 040495 217 --RNLRLLDIAFNHFSGMIPPPIFNISS------LEVISLSENRFTGSLPVDA--------------------------- 261 (443)
Q Consensus 217 --~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~--------------------------- 261 (443)
++|+.|+++.|.+.+..|..+..+++ |++|++++|.+++.++..+
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 55666666666655555444443333 5555555554443332221
Q ss_pred ----------------------------------hcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccc
Q 040495 262 ----------------------------------GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS 307 (443)
Q Consensus 262 ----------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 307 (443)
+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 2234444444444444444444444445555555555555544444
Q ss_pred hhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 308 VDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 308 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQD------QTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCS------SCSCSCCCCCEEEEETCCSC
T ss_pred HHhcCCCCCCEEECCCCCCCccCh------hhhcCCCCCCEEECCCCCCC
Confidence 445555555555555555544443 33555666666666666554
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.6e-40 Score=330.95 Aligned_cols=342 Identities=22% Similarity=0.219 Sum_probs=267.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57889999999998887788999999999999999999888888999999999999999998 66766 7899999999
Q ss_pred cCCcccc-cCCccccCCcCccEeeeeccccCccCCccccCCCCC--CEEEccCCcC--Cccc-ccccCC-----------
Q 040495 154 DTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL--LAFDVRENIL--WGRI-DSLVQL----------- 216 (443)
Q Consensus 154 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~-~~l~~l----------- 216 (443)
++|++++ ..|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ .+.. ..+..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999885 4567889999999999999998753 34455555 9999998877 3322 222111
Q ss_pred ----------------------------------------------------------------------CCCCEEEccc
Q 040495 217 ----------------------------------------------------------------------RNLRLLDIAF 226 (443)
Q Consensus 217 ----------------------------------------------------------------------~~L~~L~l~~ 226 (443)
++|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 1566667777
Q ss_pred ccCCCCCCccc-----cCCCC--------------------------CcEEEcccCcCcccCChhhhcCCCCCcEEeCCC
Q 040495 227 NHFSGMIPPPI-----FNISS--------------------------LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275 (443)
Q Consensus 227 n~~~~~~~~~l-----~~l~~--------------------------L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~ 275 (443)
|.+.+.+|..+ .+++. |++|++++|.+. ..+ ....+++|++|++++
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--CCSSCCCCCEEECCS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-ccc--CccCCCCceEEECCC
Confidence 77776666655 33332 444444444443 111 113678899999999
Q ss_pred CcCCccCCccCcCCCCCCEEecccCcCccc--cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccC
Q 040495 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGR--VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNR 353 (443)
Q Consensus 276 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 353 (443)
|++++..|..+..+++|++|++++|++++. .|..+..+++|++|++++|.+++..+. ..+..+++|++|++++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-----RTCAWAESILVLNLSS 437 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-----CCCCCCTTCCEEECCS
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-----hhhcCcccCCEEECCC
Confidence 999988888899999999999999999873 356688899999999999999884442 3477888999999999
Q ss_pred CcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchh-hcCCCCCCEEEccCCcCccc
Q 040495 354 NRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPV-IGELKNLQLLDLGGNFLQGS 432 (443)
Q Consensus 354 n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~ 432 (443)
|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+.
T Consensus 438 n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 438 NMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCcchhhhhc---CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 999877665442 57999999999998 78888888999999999999998 67776 88899999999999998876
Q ss_pred CC
Q 040495 433 IP 434 (443)
Q Consensus 433 ~p 434 (443)
.|
T Consensus 513 c~ 514 (562)
T 3a79_B 513 CP 514 (562)
T ss_dssp HH
T ss_pred cc
Confidence 55
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=329.26 Aligned_cols=351 Identities=20% Similarity=0.233 Sum_probs=258.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++..+..++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 45666666666666555555666666666666666665555555666666666666666555333334555555555555
Q ss_pred cCCcccc-cCCccccCCcCccEeeeeccccCccCC---------------------------------------------
Q 040495 154 DTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLP--------------------------------------------- 187 (443)
Q Consensus 154 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~--------------------------------------------- 187 (443)
++|.+++ .+|..++++++|++|++++|.+++..+
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccc
Confidence 5555553 245555555555555555554432222
Q ss_pred ----------------------------------------------------------------ccccCCCCCCEEEccC
Q 040495 188 ----------------------------------------------------------------ASIGNLSSLLAFDVRE 203 (443)
Q Consensus 188 ----------------------------------------------------------------~~l~~l~~L~~L~l~~ 203 (443)
..+..+++|+++++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 2233456777777777
Q ss_pred CcCCcccccccCCCCCCEEEcccccCCCCCCcc--------------------ccCCCCCcEEEcccCcCcccC--Chhh
Q 040495 204 NILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPP--------------------IFNISSLEVISLSENRFTGSL--PVDA 261 (443)
Q Consensus 204 n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--------------------l~~l~~L~~L~l~~n~l~~~~--~~~~ 261 (443)
|.+...+..+..+ +|++|++++|.+. .+|.. ...+++|++|++++|.+++.. +..+
T Consensus 292 ~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (570)
T 2z63_A 292 VTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369 (570)
T ss_dssp CEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred ccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccc
Confidence 7666544555555 6667777666655 22221 156788999999999887443 4555
Q ss_pred hcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccc-hhhhCCCCCCEEEccCCCCcccCCCchhhHhhh
Q 040495 262 GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLSFLNMGINNLGTRTANELDFINLL 340 (443)
Q Consensus 262 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 340 (443)
. .+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ ..+
T Consensus 370 ~-~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~ 441 (570)
T 2z63_A 370 F-GTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------GIF 441 (570)
T ss_dssp H-TCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT------TTT
T ss_pred c-ccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch------hhh
Confidence 5 899999999999999854 4449999999999999999998766 468899999999999999998877 668
Q ss_pred cCCCCCCEEEccCCcCc-ccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCC
Q 040495 341 ANCSKLERLYFNRNRFQ-GVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNL 419 (443)
Q Consensus 341 ~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L 419 (443)
.++++|++|++++|+++ +.+|..+..+ ++|+.|++++|++++..|..+..+++|++|++++|.+++..|+.+.++++|
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcc-cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 89999999999999998 5788877774 899999999999999889999999999999999999998878889999999
Q ss_pred CEEEccCCcCcccCCc
Q 040495 420 QLLDLGGNFLQGSIPS 435 (443)
Q Consensus 420 ~~L~l~~n~l~~~~p~ 435 (443)
++|++++|++++.+|.
T Consensus 521 ~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 521 QKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred cEEEecCCcccCCCcc
Confidence 9999999999998884
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.2e-39 Score=332.05 Aligned_cols=350 Identities=19% Similarity=0.236 Sum_probs=215.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCC--CCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCcee
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSF--LRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIEL 151 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~--L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 151 (443)
..++.|+++++.+.+..+..+..++. |++|++++|.+++..+..++.+++|++|++++|.+++..|..+.++++|++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 35778888888888877777777755 8888888888887777888888888888888888888888888888888888
Q ss_pred eccCCcccc-----cCCc----cccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc---ccccC--CC
Q 040495 152 SVDTNYLVG-----EIPS----AIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI---DSLVQ--LR 217 (443)
Q Consensus 152 ~l~~n~l~~-----~~p~----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~l~~--l~ 217 (443)
++++|...+ .+|. .+..+++|++|++++|.+++..+..+.++++|++|++++|.+.... ..+.. .+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 888765442 2332 5677888888888888888777777888888888888877643222 12221 24
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEec
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
+|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|...+..+++|++|++++|++.+..+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 67777777777776666667777777777777777766666444446667777777776665554555555555555555
Q ss_pred ccCcCc--cccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh--------hHhhh
Q 040495 298 SRNQFS--GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ--------SMANF 367 (443)
Q Consensus 298 ~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~--------~~~~~ 367 (443)
++|.+. +..|..+..+++|+.|++++|.+++..+ ..+.++++|++|++++|++++..+. .+..
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~- 534 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND------DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG- 534 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT-
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCCh------hhhccccccCEEeCCCCCccccchhhccCCcchhhcC-
Confidence 555544 3344445555555555555555554443 3344444455555555544421110 1122
Q ss_pred ccCCCEEeccCCcCeecCc-hhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 368 SSTIKQIAMGRNRISGTIP-PGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 368 ~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
.++|+.|++++|+++ .+| ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++
T Consensus 535 l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 535 LSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred CCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 244444444444444 222 234444444444444444442222233444444444444444443
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-39 Score=317.41 Aligned_cols=339 Identities=18% Similarity=0.235 Sum_probs=291.9
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCC-ChhhhcCCCCceeeccCCcccccCCccccCCcCccEee
Q 040495 98 SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTI-PTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLF 176 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 176 (443)
++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999997555 56789999999999999999988899999999999999
Q ss_pred eeccccCccCCcc--ccCCCCCCEEEccCCcCCccc-cc-ccCCCCCCEEEcccccCCCCCCccccCC--CCCcEEEccc
Q 040495 177 IFHNHITGQLPAS--IGNLSSLLAFDVRENILWGRI-DS-LVQLRNLRLLDIAFNHFSGMIPPPIFNI--SSLEVISLSE 250 (443)
Q Consensus 177 l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~-~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~ 250 (443)
+++|.+++..+.. +..+++|++|++++|.+.+.. .. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 889999999999999998876 33 8899999999999999998888888765 7899999999
Q ss_pred CcCcccCChhh-------hcCCCCCcEEeCCCCcCCccCCccCcCC---CCCCEEecccCcCcccc----------chhh
Q 040495 251 NRFTGSLPVDA-------GVNLPNLRQLSPNGNNFTGSIPVSLSNA---SRLEMIEFSRNQFSGRV----------SVDF 310 (443)
Q Consensus 251 n~l~~~~~~~~-------~~~~~~L~~L~L~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~----------~~~~ 310 (443)
|.+.+..+..+ ...+++|++|++++|++++..|..+... ++|+.|++++|...+.. +..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 99984332211 1145789999999999998887766544 89999999998655421 1222
Q ss_pred h--CCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchh
Q 040495 311 S--RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPG 388 (443)
Q Consensus 311 ~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~ 388 (443)
. ..++|+.|++++|.+++..+ ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..|..
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLK------SVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECT------TTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGGG
T ss_pred ccccccCceEEEecCccccccch------hhcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChhH
Confidence 2 23689999999999999887 668899999999999999998778777774 89999999999999888999
Q ss_pred hhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 389 IRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 389 l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+.++++|
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 9999999999999999998889999999999999999999997555566776654
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-38 Score=321.92 Aligned_cols=343 Identities=20% Similarity=0.220 Sum_probs=281.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCC-CCChhhhcCCCCceee
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG-TIPTNLSRRSNLIELS 152 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~ 152 (443)
.+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..++++++|++|++++|.+++ ..|..+.++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 679999999999999888899999999999999999998888889999999999999999986 4577889999999999
Q ss_pred ccCCcccccCC-ccccCCcCccEeeeeccccCccCCccccC------------------------CCCCCEEEccCCcCC
Q 040495 153 VDTNYLVGEIP-SAIGSLFKLERLFIFHNHITGQLPASIGN------------------------LSSLLAFDVRENILW 207 (443)
Q Consensus 153 l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------l~~L~~L~l~~n~l~ 207 (443)
+++|.+.+.+| ..+..+++|++|++++|.+++..|..+.. +++|++|++++|.+.
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 99998554555 57889999999999999998777766543 567777777777666
Q ss_pred ccc----ccc----------------------------cC----------------------------------------
Q 040495 208 GRI----DSL----------------------------VQ---------------------------------------- 215 (443)
Q Consensus 208 ~~~----~~l----------------------------~~---------------------------------------- 215 (443)
+.. ... ..
T Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289 (549)
T ss_dssp TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence 531 000 00
Q ss_pred -------------------CCCCCEEEcccccCCCCCCccc-cCCCCCcEEEcccCcCcccCChh--hhcCCCCCcEEeC
Q 040495 216 -------------------LRNLRLLDIAFNHFSGMIPPPI-FNISSLEVISLSENRFTGSLPVD--AGVNLPNLRQLSP 273 (443)
Q Consensus 216 -------------------l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~~L~~L~L 273 (443)
.++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+|.. ....+++|++|++
T Consensus 290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred ccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 134555555555554 456555 47999999999999999776543 1237899999999
Q ss_pred CCCcCCccCC--ccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEc
Q 040495 274 NGNNFTGSIP--VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYF 351 (443)
Q Consensus 274 ~~n~l~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l 351 (443)
++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++..... + .++|++|++
T Consensus 369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-------~--~~~L~~L~L 438 (549)
T 2z81_A 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC-------I--PQTLEVLDV 438 (549)
T ss_dssp TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTT-------S--CTTCSEEEC
T ss_pred cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccch-------h--cCCceEEEC
Confidence 9999985432 45889999999999999999 5777888999999999999998865431 1 268999999
Q ss_pred cCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 352 NRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 352 ~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++|++++.+ .. .++|+.|++++|+++ .+|. ...+++|++|++++|++++..|+.+..+++|++|++++|++.+
T Consensus 439 s~N~l~~~~----~~-l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 439 SNNNLDSFS----LF-LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CSSCCSCCC----CC-CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCChhhhc----cc-CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 999999643 23 478999999999999 7776 5778999999999999998888889999999999999999998
Q ss_pred cCC
Q 040495 432 SIP 434 (443)
Q Consensus 432 ~~p 434 (443)
.+|
T Consensus 512 ~~~ 514 (549)
T 2z81_A 512 SCP 514 (549)
T ss_dssp CHH
T ss_pred CCc
Confidence 877
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=337.12 Aligned_cols=364 Identities=20% Similarity=0.207 Sum_probs=213.2
Q ss_pred CcEEEEEcCCCCCcccc-cccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChh--hhcCCCCce
Q 040495 74 QRVTRLDLRNQSIGGPL-SPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTN--LSRRSNLIE 150 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~--l~~l~~L~~ 150 (443)
.+++.|++++|...+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++|++++|.+++..|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 34555555555444433 445555555555555555555555555555555555555555555444433 555555555
Q ss_pred eeccCCcccccCC-ccccCCcCccEeeeeccccCccCCcc--------------------------ccCCCC------CC
Q 040495 151 LSVDTNYLVGEIP-SAIGSLFKLERLFIFHNHITGQLPAS--------------------------IGNLSS------LL 197 (443)
Q Consensus 151 L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~--------------------------l~~l~~------L~ 197 (443)
|++++|.+++..+ ..++++++|++|++++|.+++..+.. +..+++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 5555555554332 34555555555555555554443333 333332 66
Q ss_pred EEEccCCcCCccc-cc------------------------------------ccC--CCCCCEEEcccccCCCCCCcccc
Q 040495 198 AFDVRENILWGRI-DS------------------------------------LVQ--LRNLRLLDIAFNHFSGMIPPPIF 238 (443)
Q Consensus 198 ~L~l~~n~l~~~~-~~------------------------------------l~~--l~~L~~L~l~~n~~~~~~~~~l~ 238 (443)
+|++++|.+.+.. .. +.. .++|+.|++++|.+.+..+..+.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 7777666443221 10 111 25678888888887777777778
Q ss_pred CCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCE
Q 040495 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSF 318 (443)
Q Consensus 239 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 318 (443)
.+++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred cCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 888888888888888755454443 7788888888888888777778888888888888888888777777788888888
Q ss_pred EEccCCCCcccCCC----------------------------------chhhHhhhcCCCCCCEEEccCCcCcccCChhH
Q 040495 319 LNMGINNLGTRTAN----------------------------------ELDFINLLANCSKLERLYFNRNRFQGVLPQSM 364 (443)
Q Consensus 319 L~l~~n~l~~~~~~----------------------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 364 (443)
|++++|.+++.... .+.....+..+++|++|++++|++++..+...
T Consensus 367 L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp EEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred EECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 88888877653210 00011224466777777777777764322211
Q ss_pred hhhc-----------------------------cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcC
Q 040495 365 ANFS-----------------------------STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGE 415 (443)
Q Consensus 365 ~~~~-----------------------------~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~ 415 (443)
.... ++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+.
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~- 525 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP- 525 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-
T ss_pred cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-
Confidence 1112 4445555555555544444455555555555555555533333332
Q ss_pred CCCCCEEEccCCcCcccCCccccCC
Q 040495 416 LKNLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 416 l~~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
++|+.|++++|++++..|+.|.++
T Consensus 526 -~~L~~L~Ls~N~l~~~~~~~~~~L 549 (844)
T 3j0a_A 526 -ANLEILDISRNQLLAPNPDVFVSL 549 (844)
T ss_dssp -SCCCEEEEEEECCCCCCSCCCSSC
T ss_pred -ccccEEECCCCcCCCCChhHhCCc
Confidence 455566666666665555555444
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=312.47 Aligned_cols=349 Identities=19% Similarity=0.235 Sum_probs=286.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCC
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 156 (443)
+.+++++++++. +|..+. ++|++|++++|.+++..|..+.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 479999999985 666555 89999999999999888889999999999999999999888999999999999999999
Q ss_pred cccccCCccccCCcCccEeeeeccccCc-cCCccccCCCCCCEEEccCCcCCcccccccCCCCC--CEEEcccccC--CC
Q 040495 157 YLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL--RLLDIAFNHF--SG 231 (443)
Q Consensus 157 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L--~~L~l~~n~~--~~ 231 (443)
+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccc
Confidence 998 67766 89999999999999987 578899999999999999998876 455667777 9999999999 66
Q ss_pred CCCccccCCC----------------------------------------------------------------------
Q 040495 232 MIPPPIFNIS---------------------------------------------------------------------- 241 (443)
Q Consensus 232 ~~~~~l~~l~---------------------------------------------------------------------- 241 (443)
..|..+..+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 6666655532
Q ss_pred -------------CCcEEEcccCcCcccCChhhh----cCCCCCcEEeCCCCcCCccCC---------------------
Q 040495 242 -------------SLEVISLSENRFTGSLPVDAG----VNLPNLRQLSPNGNNFTGSIP--------------------- 283 (443)
Q Consensus 242 -------------~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~--------------------- 283 (443)
+|++|++++|.++|.+|..++ ..+++|+.+++++|.+ .+|
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 566677777777767776652 2455555555544444 122
Q ss_pred ----cc-CcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcc
Q 040495 284 ----VS-LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358 (443)
Q Consensus 284 ----~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 358 (443)
.. ...+++|++|++++|++++..|..+..+++|++|++++|.+++... .+..+..+++|++|++++|++++
T Consensus 313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK----IAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH----HHHHHTTCTTCCEEECCSSCCBC
T ss_pred ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc----chHHHhhCCCCCEEECCCCcCCc
Confidence 00 1678899999999999999888889999999999999999986321 22568899999999999999997
Q ss_pred cCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCcc-c
Q 040495 359 VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSS-L 437 (443)
Q Consensus 359 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~ 437 (443)
.+|...+...++|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 464 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF 464 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHh
Confidence 68876444358999999999999988877664 78999999999999 89998889999999999999999 67876 7
Q ss_pred cCCCCC
Q 040495 438 GNLTLL 443 (443)
Q Consensus 438 ~~l~~L 443 (443)
.++++|
T Consensus 465 ~~l~~L 470 (520)
T 2z7x_B 465 DRLTSL 470 (520)
T ss_dssp TTCTTC
T ss_pred ccCCcc
Confidence 766654
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-37 Score=297.45 Aligned_cols=310 Identities=17% Similarity=0.171 Sum_probs=205.3
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
.++++++|++++|.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45677777777777664444445667777777777777775555667777777777777777776556666777777777
Q ss_pred eeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCc
Q 040495 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 254 (443)
++++|.++...+..+.++++|++|++++|.+.+.. ..+..+++|++|++++|.+++. .+..+++|+++++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 77777777333333566777777777777766655 4566677777777777776643 2445667777777777665
Q ss_pred ccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCch
Q 040495 255 GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334 (443)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
.++ ..++|++|++++|.+... |.. ..++|+.|++++|++++. ..+..+++|++|++++|.+++..+
T Consensus 200 -~~~-----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~--- 265 (390)
T 3o6n_A 200 -TLA-----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY--- 265 (390)
T ss_dssp -EEE-----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES---
T ss_pred -ccC-----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh---
Confidence 222 345677777777777633 322 245677777777777653 456677777777777777776655
Q ss_pred hhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhc
Q 040495 335 DFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIG 414 (443)
Q Consensus 335 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 414 (443)
..+..+++|++|++++|++++ +|..+.. .++|+.|++++|+++ .+|..+..+++|++|++++|.++ .++ +.
T Consensus 266 ---~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~ 336 (390)
T 3o6n_A 266 ---HPFVKMQRLERLYISNNRLVA-LNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LS 336 (390)
T ss_dssp ---GGGTTCSSCCEEECCSSCCCE-EECSSSC-CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CC
T ss_pred ---hHccccccCCEEECCCCcCcc-cCcccCC-CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--ch
Confidence 556677777777777777763 4444433 367777777777776 56666677777777777777776 333 55
Q ss_pred CCCCCCEEEccCCcCcc
Q 040495 415 ELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 415 ~l~~L~~L~l~~n~l~~ 431 (443)
.+++|++|++++|++.+
T Consensus 337 ~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TTCCCSEEECCSSCEEH
T ss_pred hhccCCEEEcCCCCccc
Confidence 66777777777777754
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=304.98 Aligned_cols=319 Identities=18% Similarity=0.178 Sum_probs=259.1
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCc
Q 040495 78 RLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 157 (443)
.++.++++++. +|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 34444555543 44433 3589999999999998888899999999999999999998889999999999999999999
Q ss_pred ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCcc
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPP 236 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.. ..+..+++|++|++++|.+++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 98555556889999999999999999888888899999999999999887766 67888889999999998888766667
Q ss_pred ccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCC
Q 040495 237 IFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316 (443)
Q Consensus 237 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 316 (443)
+..+++|+.|++++|.+.+ ++...+..+++|++|++++|...+.+|.......+|++|++++|++++..+..+..+++|
T Consensus 172 l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 8888888999988888874 444444478888888888887777777766666788888888888886655678888888
Q ss_pred CEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCC
Q 040495 317 SFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLN 396 (443)
Q Consensus 317 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 396 (443)
+.|++++|.+++..+ ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..+..+..+++|+
T Consensus 251 ~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 251 RFLNLSYNPISTIEG------SMLHELLRLQEIQLVGGQLAVVEPYAFRGL-NYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp CEEECCSSCCCEECT------TSCTTCTTCCEEECCSSCCSEECTTTBTTC-TTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred CeeECCCCcCCccCh------hhccccccCCEEECCCCccceECHHHhcCc-ccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 888888888887766 557788888888888888887767766664 7888888888888866666677788888
Q ss_pred eEeCcCCcCcc
Q 040495 397 WLTMDSNLFTG 407 (443)
Q Consensus 397 ~L~L~~n~~~~ 407 (443)
+|++++|++..
T Consensus 324 ~L~l~~N~l~c 334 (477)
T 2id5_A 324 TLILDSNPLAC 334 (477)
T ss_dssp EEECCSSCEEC
T ss_pred EEEccCCCccC
Confidence 88888888774
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.1e-36 Score=299.39 Aligned_cols=322 Identities=24% Similarity=0.376 Sum_probs=243.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|+++++.+.+..+ +..+++|++|++++|.+.+..+ ++++++|++|++++|.+++. +. +..+++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEEC
Confidence 456777777777665433 6677777777777777664333 67777777777777777643 32 667777777777
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+.+ ++ .++.+++|++|+++ +.+.+. ..+.++++|++|++++|.+... ..+..+++|++|++++|.+.+..
T Consensus 142 ~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 142 SSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccc
Confidence 7777653 33 36667777777775 334322 2377888888888888877654 45777888888999888887654
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
+ +..+++|++|++++|.++ .++ .+. .+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+
T Consensus 216 ~--~~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 216 P--LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred c--ccccCCCCEEECCCCCcc-cch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC
Confidence 4 677888999999988887 343 233 68889999999998886544 7888899999999999887544 7888
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
++|+.|++++|.+++..+ +..+++|++|++++|++++..| +.. +++|+.|++++|++++. ..+..++
T Consensus 287 ~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNNISDISP--VSS-LTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSCCSCCGG--GGG-CTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred CccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCcCCCchh--hcc-CccCCEeECCCCccCCc--hhhccCC
Confidence 999999999998887543 6788999999999999986655 444 48899999999999864 4688899
Q ss_pred CCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
+|++|++++|++++..| +..+++|++|++++|++++
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999999987776 8889999999999998886
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.1e-37 Score=310.96 Aligned_cols=350 Identities=20% Similarity=0.245 Sum_probs=284.7
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccC
Q 040495 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155 (443)
Q Consensus 76 v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 155 (443)
.+.++++++++++ +|..+. +++++|++++|.+++..+..++++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3789999999986 665443 8999999999999988888999999999999999999988899999999999999999
Q ss_pred CcccccCCccccCCcCccEeeeeccccCc-cCCccccCCCCCCEEEccCCcCCcccccccCCCCC--CEEEcccccC--C
Q 040495 156 NYLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL--RLLDIAFNHF--S 230 (443)
Q Consensus 156 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L--~~L~l~~n~~--~ 230 (443)
|.++ .+|.. .+++|++|++++|.+++ ..|..+.++++|++|++++|.+... .+..+++| ++|++++|.+ .
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccccccc
Confidence 9998 67776 89999999999999986 3568999999999999999988763 34444555 9999999998 6
Q ss_pred CCCCccccCCC---------------------------------------------------------------------
Q 040495 231 GMIPPPIFNIS--------------------------------------------------------------------- 241 (443)
Q Consensus 231 ~~~~~~l~~l~--------------------------------------------------------------------- 241 (443)
+..|..+..+.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 66666555432
Q ss_pred ------------CCcEEEcccCcCcccCChhhh----cCC--------------------------CCCcEEeCCCCcCC
Q 040495 242 ------------SLEVISLSENRFTGSLPVDAG----VNL--------------------------PNLRQLSPNGNNFT 279 (443)
Q Consensus 242 ------------~L~~L~l~~n~l~~~~~~~~~----~~~--------------------------~~L~~L~L~~n~l~ 279 (443)
+|++|++++|.++|.+|..++ ..+ .++++|++++|.+.
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 556666666666666665431 011 23555555555544
Q ss_pred ccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCccc
Q 040495 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV 359 (443)
Q Consensus 280 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 359 (443)
... ....+++|++|++++|++++..|..+..+++|++|++++|.+++... .+..+.++++|++|++++|++++.
T Consensus 345 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 345 HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK----VALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH----HHHTTTTCTTCCEEECTTSCCBSC
T ss_pred ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc----chhhhcCCCCCCEEECCCCcCCCc
Confidence 211 11678999999999999999899999999999999999999987432 125588999999999999999976
Q ss_pred CChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCcc-cc
Q 040495 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSS-LG 438 (443)
Q Consensus 360 ~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~ 438 (443)
+|...+...++|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +.
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 494 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence 8876544458999999999999987776554 78999999999999 89988889999999999999999 68876 77
Q ss_pred CCCCC
Q 040495 439 NLTLL 443 (443)
Q Consensus 439 ~l~~L 443 (443)
.++.|
T Consensus 495 ~l~~L 499 (562)
T 3a79_B 495 RLTSL 499 (562)
T ss_dssp TCTTC
T ss_pred cCCCC
Confidence 66654
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-36 Score=309.35 Aligned_cols=359 Identities=22% Similarity=0.233 Sum_probs=234.7
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..+++|||++|.+++..+.+|.++++|++|+|++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46899999999999888889999999999999999999777888999999999999999999766778999999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCc-cCCccccCCCCCCEEEccCCcCCccc-ccccCCC--------------
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLVQLR-------------- 217 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~-------------- 217 (443)
++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.. ..+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999997666679999999999999999975 46788899999999999999776543 2221111
Q ss_pred -------------CCCEEEcccccCC-------------------------------CC---------------------
Q 040495 218 -------------NLRLLDIAFNHFS-------------------------------GM--------------------- 232 (443)
Q Consensus 218 -------------~L~~L~l~~n~~~-------------------------------~~--------------------- 232 (443)
.++.+++.+|... ..
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 1111222111000 00
Q ss_pred ------C----------------------CccccCCCCCcEEEcccCcCcccCC-------------------hhhhcCC
Q 040495 233 ------I----------------------PPPIFNISSLEVISLSENRFTGSLP-------------------VDAGVNL 265 (443)
Q Consensus 233 ------~----------------------~~~l~~l~~L~~L~l~~n~l~~~~~-------------------~~~~~~~ 265 (443)
. ...+.....++.|++.+|.+.+..+ ... ..+
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~l 370 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-VDL 370 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC-CBC
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc-ccc
Confidence 0 0011112244455554444321100 000 124
Q ss_pred CCCcEEeCCCCcCCc-------------------------cCCccCcCCCCCCEEecccCcCccccc-hhhhCCCCCCEE
Q 040495 266 PNLRQLSPNGNNFTG-------------------------SIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLSFL 319 (443)
Q Consensus 266 ~~L~~L~L~~n~l~~-------------------------~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 319 (443)
++|+.+++++|.+.. ..+..+..+++|+.+++.++......+ ..+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 556666666555431 122233445555555555554443332 235556666666
Q ss_pred EccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcc-cCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeE
Q 040495 320 NMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG-VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWL 398 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 398 (443)
+++.|.+.+..+ ..+..++++++|++++|.+.+ ..|..+.. .++|+.|+|++|++++..|..|..+++|++|
T Consensus 451 ~ls~n~l~~~~~------~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~-l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 451 DISHTHTRVAFN------GIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp ECTTSCCEECCT------TTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccc------cccccchhhhhhhhhhcccccccCchhhhh-ccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 666666666555 445566667777776665433 23444444 3567777777777776666666667777777
Q ss_pred eCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCC
Q 040495 399 TMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 399 ~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
+|++|++++..|..+..+++|++||+++|++++..|+.+.++
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 777777765556666666777777777777776666666554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.2e-36 Score=294.74 Aligned_cols=332 Identities=27% Similarity=0.396 Sum_probs=282.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 478999999998865 44 478899999999999999854 44 9999999999999999985544 899999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++. +. +..+++|++|++++|.+.+ ++ .+..+++|++|++++ .+... ..+..+++|++|++++|.+.+.
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~-~~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL-KPLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC-GGGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc-hhhccCCCCCEEECcCCcCCCC-
Confidence 99999854 43 8999999999999999985 34 589999999999964 33332 4488899999999999998754
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
..+..+++|++|++++|.+++..| +. .+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred -hhhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence 458899999999999999986544 33 689999999999999853 467889999999999999997655 8899
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +.. +++|+.|++++|++++..| +..++
T Consensus 265 ~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~L~~n~l~~~~~--~~~l~ 331 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--------LAGLTALTNLELNENQLEDISP--ISN-LKNLTYLTLYFNNISDISP--VSSLT 331 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--------GTTCTTCSEEECCSSCCSCCGG--GGG-CTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred CCCCEEECCCCccCcccc--------ccCCCccCeEEcCCCcccCchh--hcC-CCCCCEEECcCCcCCCchh--hccCc
Confidence 999999999999987643 7789999999999999996444 555 4899999999999997665 78999
Q ss_pred CCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
+|++|++++|.+++. ..+..+++|++|++++|++++..| +.+++.|
T Consensus 332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 999999999999854 468899999999999999998877 6666543
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=302.24 Aligned_cols=303 Identities=17% Similarity=0.149 Sum_probs=275.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999999988889999999999999999999888999999999999999999999666667899999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
++|.+.+..|..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.... ..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 999999888889999999999999999999888889999999999999999998877 6788999999999999999988
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
.+..+..+++|++|++++|...+.+|...+ ...+|++|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 888899999999999999998888888777 5679999999999999555567899999999999999999888888999
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeec
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT 384 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~ 384 (443)
+++|+.|++++|.+++..+ ..+..+++|++|++++|++++..+..+.. +++|+.|++++|++...
T Consensus 271 l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEP------YAFRGLNYLRVLNVSGNQLTTLEESVFHS-VGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECT------TTBTTCTTCCEEECCSSCCSCCCGGGBSC-GGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECH------HHhcCcccCCEEECCCCcCceeCHhHcCC-CcccCEEEccCCCccCc
Confidence 9999999999999999887 67889999999999999999544444444 58999999999999865
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-36 Score=306.89 Aligned_cols=309 Identities=17% Similarity=0.171 Sum_probs=151.0
Q ss_pred CCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEee
Q 040495 97 LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLF 176 (443)
Q Consensus 97 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 176 (443)
+.+++.+++++|.+....+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34455555555555433333344555555555555555544444555555555555555555544444445555555555
Q ss_pred eeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcc
Q 040495 177 IFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 255 (443)
+++|.+++..+..+.++++|++|++++|.+.+.. ..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence 5555555333333445555555555555554444 3445555555555555555432 13334455555555554442
Q ss_pred cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchh
Q 040495 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
++ ..++|+.|++++|.+... +..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..+
T Consensus 207 -l~-----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~---- 271 (597)
T 3oja_B 207 -LA-----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY---- 271 (597)
T ss_dssp -EE-----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES----
T ss_pred -cc-----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH----
Confidence 11 234455555555555422 1111 2345555555555554 2334555555555555555555444
Q ss_pred hHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcC
Q 040495 336 FINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGE 415 (443)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~ 415 (443)
..+..+++|++|++++|.+++ +|..+.. .++|+.|+|++|.++ .+|..+..+++|++|++++|.+++ +| +..
T Consensus 272 --~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~-l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~ 343 (597)
T 3oja_B 272 --HPFVKMQRLERLYISNNRLVA-LNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LST 343 (597)
T ss_dssp --GGGTTCSSCCEEECTTSCCCE-EECSSSC-CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCT
T ss_pred --HHhcCccCCCEEECCCCCCCC-CCccccc-CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhh
Confidence 344555555555555555552 3333322 245555555555555 345555555555555555555542 22 344
Q ss_pred CCCCCEEEccCCcCcc
Q 040495 416 LKNLQLLDLGGNFLQG 431 (443)
Q Consensus 416 l~~L~~L~l~~n~l~~ 431 (443)
+++|+.|++++|++++
T Consensus 344 ~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDC 359 (597)
T ss_dssp TCCCSEEECCSSCEEH
T ss_pred cCCCCEEEeeCCCCCC
Confidence 4555555555555543
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1e-35 Score=292.50 Aligned_cols=333 Identities=18% Similarity=0.186 Sum_probs=265.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|+++++.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. | ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 5789999999999874 4 689999999999999999864 4 88999999999999999964 4 889999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++ +| ++.+++|++|++++|.+++. + ++.+++|++|++++|...+.. .+..+++|++|++++|.+++ +
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-e
Confidence 9999985 44 88999999999999999963 3 788999999999999655444 57788999999999999986 4
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
| +..+++|++|++++|.+++ ++ +. .+++|++|++++|++++ +| +..+++|+.|++++|++++..+. .+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~-~~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~---~l 253 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITK-LD--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS---TL 253 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT---TC
T ss_pred c--cccCCCCCEEECcCCcCCe-ec--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH---HC
Confidence 4 8889999999999999985 43 33 78999999999999996 56 88899999999999999986543 45
Q ss_pred CCCCEEEccCCCCcccCCCchhhH--hhhcCCCCCCEEEccCCcCcccCChh--------HhhhccCCCEEeccCCcCee
Q 040495 314 KNLSFLNMGINNLGTRTANELDFI--NLLANCSKLERLYFNRNRFQGVLPQS--------MANFSSTIKQIAMGRNRISG 383 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~--------~~~~~~~L~~L~L~~n~l~~ 383 (443)
++|+.|+++.|++........... -.+..+++|+.|++++|...+.+|.. +.. .++|+.|++++|++++
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~-~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ-NPKLVYLYLNNTELTE 332 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT-CTTCCEEECTTCCCSC
T ss_pred CCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhh-cccCCEEECCCCcccc
Confidence 555555555554433221100000 01467899999999999877776642 222 3689999999999997
Q ss_pred cCchhhhcCCCCCeEeCcCCcCcccCch--hh----------cCCCCCCEEEccCCcCcccCCccccC
Q 040495 384 TIPPGIRSHANLNWLTMDSNLFTGTIPP--VI----------GELKNLQLLDLGGNFLQGSIPSSLGN 439 (443)
Q Consensus 384 ~~p~~l~~~~~L~~L~L~~n~~~~~~p~--~~----------~~l~~L~~L~l~~n~l~~~~p~~~~~ 439 (443)
++ ++.+++|+.|++++|++++ ++. .+ +.+..|+.+++++|+++|.||..+..
T Consensus 333 -l~--l~~l~~L~~L~l~~N~l~~-l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 333 -LD--VSHNTKLKSLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCCB-CTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred -cc--cccCCcCcEEECCCCCCCC-ccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence 43 8899999999999999985 332 00 12356788999999999999987643
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.4e-35 Score=278.23 Aligned_cols=306 Identities=22% Similarity=0.364 Sum_probs=218.9
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccE
Q 040495 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLER 174 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 174 (443)
..+++|++|+++++.+. .++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.++. + +.+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 35566666666666655 3332 5666666666666666653 333 6666666666666666653 2 24666666777
Q ss_pred eeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCc
Q 040495 175 LFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 175 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 254 (443)
|++++|.+++ ++. +..+++|++|++++|........+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 115 L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred EECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 7777666663 232 666777777777777555445556777777777777777764432 677788888888888877
Q ss_pred ccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCch
Q 040495 255 GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334 (443)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
.++. + ..+++|+.+++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++.
T Consensus 191 -~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----- 258 (347)
T 4fmz_A 191 -DISP-L-ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI----- 258 (347)
T ss_dssp -CCGG-G-GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred -cccc-c-cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-----
Confidence 4443 3 367888888888888875443 7778888888888888886544 78888999999998888764
Q ss_pred hhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhc
Q 040495 335 DFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIG 414 (443)
Q Consensus 335 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 414 (443)
..+..+++|++|++++|++++ ++ .+.. +++|+.|++++|++++..|..+..+++|++|++++|++++..| +.
T Consensus 259 ---~~~~~l~~L~~L~l~~n~l~~-~~-~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 259 ---NAVKDLTKLKMLNVGSNQISD-IS-VLNN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp ---GGGTTCTTCCEEECCSSCCCC-CG-GGGG-CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred ---hhHhcCCCcCEEEccCCccCC-Ch-hhcC-CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 237788899999999999884 43 3444 4889999999999998888889999999999999999986555 78
Q ss_pred CCCCCCEEEccCCcCc
Q 040495 415 ELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 415 ~l~~L~~L~l~~n~l~ 430 (443)
.+++|++|++++|+++
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 8999999999999875
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.4e-35 Score=281.36 Aligned_cols=311 Identities=17% Similarity=0.176 Sum_probs=271.7
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++.++++++.+....+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 46788999999887765566889999999999999999777789999999999999999999888888999999999999
Q ss_pred cCCcccccCCc-cccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCC
Q 040495 154 DTNYLVGEIPS-AIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 154 ~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
++|.++ .+|. .++.+++|++|++++|.+++..+..+..+++|++|++++|.+... .+..+++|+.+++++|.+.+
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE-
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc-
Confidence 999998 4554 468999999999999999988788899999999999999988875 35668999999999998863
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
+...++|++|++++|.+. .+|.. ..++|++|++++|++++. ..+..+++|++|++++|.+++..|..+..
T Consensus 201 ----~~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp ----EECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ----cCCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 334568999999999998 45543 357999999999999854 57889999999999999999999999999
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcC
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH 392 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~ 392 (443)
+++|+.|++++|.+++... .+..+++|++|++++|+++ .+|..+..+ ++|+.|++++|++++ ++ +..+
T Consensus 271 l~~L~~L~L~~n~l~~~~~-------~~~~l~~L~~L~L~~n~l~-~~~~~~~~l-~~L~~L~L~~N~i~~-~~--~~~~ 338 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNL-------YGQPIPTLKVLDLSHNHLL-HVERNQPQF-DRLENLYLDHNSIVT-LK--LSTH 338 (390)
T ss_dssp CSSCCEEECCSSCCCEEEC-------SSSCCTTCCEEECCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCC-CC--CCTT
T ss_pred cccCCEEECCCCcCcccCc-------ccCCCCCCCEEECCCCcce-ecCcccccc-CcCCEEECCCCccce-eC--chhh
Confidence 9999999999999988644 3567899999999999999 778877775 899999999999984 44 7788
Q ss_pred CCCCeEeCcCCcCcccCc
Q 040495 393 ANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 393 ~~L~~L~L~~n~~~~~~p 410 (443)
++|++|++++|++...-.
T Consensus 339 ~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CCCSEEECCSSCEEHHHH
T ss_pred ccCCEEEcCCCCccchhH
Confidence 999999999999986433
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.3e-34 Score=282.97 Aligned_cols=305 Identities=20% Similarity=0.234 Sum_probs=260.6
Q ss_pred ccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCC
Q 040495 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSL 169 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 169 (443)
.+..+.++++|++|++++|.+++ +| .++.+++|++|++++|.+++. | +..+++|++|++++|.+++. + ++.+
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 34467889999999999999986 45 689999999999999999964 4 88999999999999999864 4 8899
Q ss_pred cCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcc
Q 040495 170 FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLS 249 (443)
Q Consensus 170 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 249 (443)
++|++|++++|.+++ +| +..+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|+++
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 999999999999996 44 88999999999999999885 4788999999999999766665 47889999999999
Q ss_pred cCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCccc
Q 040495 250 ENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329 (443)
Q Consensus 250 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 329 (443)
+|.+++ +| +. .+++|++|++++|++++. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+++.
T Consensus 179 ~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 179 FNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 999984 66 33 789999999999999964 38899999999999999998 45 78999999999999999987
Q ss_pred CCCchhhHhhhcCCC-------CCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCch--------hhhcCCC
Q 040495 330 TANELDFINLLANCS-------KLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP--------GIRSHAN 394 (443)
Q Consensus 330 ~~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~--------~l~~~~~ 394 (443)
.+ ..+.++. +|+.|++++|.+.+.+|. .. +++|+.|++++|...+.+|. .+..+++
T Consensus 249 ~~------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~-l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 249 DV------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EG-CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp CC------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TT-CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CH------HHCCCCCEEeccCCCCCEEECCCCccCCcccc--cc-cccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 65 2333333 567777777877777773 33 48999999999998877764 2566789
Q ss_pred CCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 395 LNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 395 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
|++|++++|++++ ++ +..+++|+.|++++|+++|
T Consensus 320 L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 320 LVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred CCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 9999999999997 44 8899999999999999996
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-34 Score=284.73 Aligned_cols=338 Identities=23% Similarity=0.283 Sum_probs=160.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCcc-------------CeEEccCCCCCCCCCh
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNML-------------EGLVLSNNSFSGTIPT 140 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------------~~L~l~~n~~~~~~p~ 140 (443)
.+++.|+++++.+ |.+|+.++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4677788888877 6777777888888888888777777777777766543 566666665553 222
Q ss_pred hhhcCCCCceeeccCCcccccCCccc----------------cCC-cCccEeeeeccccCccCCccccCCCCCCEEEccC
Q 040495 141 NLSRRSNLIELSVDTNYLVGEIPSAI----------------GSL-FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE 203 (443)
Q Consensus 141 ~l~~l~~L~~L~l~~n~l~~~~p~~l----------------~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 203 (443)
. .++|++|++++|.+++ +|..+ ... ++|++|++++|.+++ +| .++++++|++|++++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred C---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 1 1344444444444432 22211 011 466777777776664 55 466777777777777
Q ss_pred CcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCC
Q 040495 204 NILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIP 283 (443)
Q Consensus 204 n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 283 (443)
|.+.+.+.. .++|++|++++|.+.+ +| .+.++++|++|++++|.+++ +|. ..++|++|++++|.++ .+|
T Consensus 163 N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 163 NSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLESIVAGNNILE-ELP 231 (454)
T ss_dssp SCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS-SCC
T ss_pred CcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCcccEEECcCCcCC-ccc
Confidence 766653322 2366667777666664 34 46666667777776666653 432 1245666666666655 444
Q ss_pred ccCcCCCCCCEEecccCcCccccchhh-----------------hCCCCCCEEEccCCCCcccC--CCchhhH-------
Q 040495 284 VSLSNASRLEMIEFSRNQFSGRVSVDF-----------------SRLKNLSFLNMGINNLGTRT--ANELDFI------- 337 (443)
Q Consensus 284 ~~l~~~~~L~~L~l~~n~l~~~~~~~~-----------------~~l~~L~~L~l~~n~l~~~~--~~~~~~~------- 337 (443)
.+..+++|++|++++|++++ +|..+ ...++|+.|++++|.+++.. +..+...
T Consensus 232 -~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 232 -ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred -ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 25566666666666666554 22111 01234555555555554421 1100000
Q ss_pred hhhcCC-CCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcc--cCchhhc
Q 040495 338 NLLANC-SKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG--TIPPVIG 414 (443)
Q Consensus 338 ~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~--~~p~~~~ 414 (443)
..+... ++|++|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|..+.
T Consensus 310 ~~i~~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 310 RSLCDLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp SEECCCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred CcccCCcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence 001122 356666666666663 4432 256677777777766 4555 35677777777777776 6666666
Q ss_pred CC-------------CCCCEEEccCCcCcc--cCCccccCCC
Q 040495 415 EL-------------KNLQLLDLGGNFLQG--SIPSSLGNLT 441 (443)
Q Consensus 415 ~l-------------~~L~~L~l~~n~l~~--~~p~~~~~l~ 441 (443)
.+ ++|++|++++|+++| .+|.++.++.
T Consensus 381 ~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 381 DLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLR 422 (454)
T ss_dssp EEECCC------------------------------------
T ss_pred hhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhee
Confidence 65 677777777777777 6777766553
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-34 Score=291.92 Aligned_cols=335 Identities=16% Similarity=0.132 Sum_probs=285.1
Q ss_pred CCCCCCCCCCCCC----ccceeeCCC----------------CCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcC
Q 040495 51 VTSSWNNSMSLCQ----WTGVTCGRR----------------HQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGF 110 (443)
Q Consensus 51 ~~~~w~~~~~~c~----w~gv~c~~~----------------~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~ 110 (443)
.+.+|..+.+||. |.++.|+.. ...++.++++++.+.+..+..+..+++|++|++++|.+
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 4567887767664 655544310 03568899999988776666788999999999999999
Q ss_pred CCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccc
Q 040495 111 LGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASI 190 (443)
Q Consensus 111 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l 190 (443)
++..+..|+.+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++.+++|++|++++|.+++..|..+
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 98888899999999999999999998888889999999999999999995545557999999999999999998888889
Q ss_pred cCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcE
Q 040495 191 GNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQ 270 (443)
Q Consensus 191 ~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 270 (443)
..+++|++|++++|.+.+.. +..+++|+.|++++|.+.+ +...++|++|++++|.++ .++.. ..++|+.
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~ 236 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGP---VNVELTI 236 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-EEECS---CCSCCCE
T ss_pred hcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-ccccc---cCCCCCE
Confidence 99999999999999988753 5668999999999998864 345578999999999997 45543 3478999
Q ss_pred EeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEE
Q 040495 271 LSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLY 350 (443)
Q Consensus 271 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 350 (443)
|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++... .+..+++|++|+
T Consensus 237 L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------~~~~l~~L~~L~ 307 (597)
T 3oja_B 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-------YGQPIPTLKVLD 307 (597)
T ss_dssp EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-------SSSCCTTCCEEE
T ss_pred EECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-------ccccCCCCcEEE
Confidence 9999999986 4678999999999999999999999999999999999999999998644 356789999999
Q ss_pred ccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 351 FNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 351 l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
+++|.++ .+|..+..+ ++|+.|++++|.+++. | +..+++|+.|++++|++.+..+
T Consensus 308 Ls~N~l~-~i~~~~~~l-~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp CCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCCCC-ccCcccccC-CCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence 9999999 788888775 8999999999999854 3 6778999999999999986543
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.2e-35 Score=278.11 Aligned_cols=268 Identities=22% Similarity=0.286 Sum_probs=187.0
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCCCCCCCC----CCCCCCCCccceeeCC--------CCCcEEEEEcCCCCCcccccccc
Q 040495 28 ANSNETDRLALLAIKLQLH-DPLGVTSSW----NNSMSLCQWTGVTCGR--------RHQRVTRLDLRNQSIGGPLSPYV 94 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~l~~~~~~~~~~~~~ 94 (443)
..+..+++.||++||..+. ++.++...| ....++|.|.|+.|.. ...+|+.|+++++.+. .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 4456788999999999884 777777788 4566889999999942 2367889999988887 577778
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccC------
Q 040495 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGS------ 168 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~------ 168 (443)
.++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 88889999999998888 88888888889999999988888 77888888888999988888887788876654
Q ss_pred ---CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcE
Q 040495 169 ---LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEV 245 (443)
Q Consensus 169 ---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 245 (443)
+++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 667777777777766 5666666666666666666666554445555556666666655555555555555555555
Q ss_pred EEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccC
Q 040495 246 ISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300 (443)
Q Consensus 246 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 300 (443)
|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+.++++++.+++..+
T Consensus 258 L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 55555555555554443 4455555555555554455555555555555544443
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-33 Score=267.64 Aligned_cols=303 Identities=23% Similarity=0.378 Sum_probs=258.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.++++|+++++.+... + .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+++ +| .+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence 5789999999988753 3 48899999999999999984 444 8999999999999999984 44 6899999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+.+ ++. +..+++|++|++++|...... ..+..+++|++|++++|.+..... +..+++|++|++++|.+.+..
T Consensus 118 ~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 118 NEDNISD-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred cCCcccC-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc
Confidence 9999984 444 889999999999999766444 448999999999999998876554 788999999999999998543
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
. +..+++|+.+++++|.+++. +. + ..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+
T Consensus 194 -~-~~~l~~L~~L~l~~n~l~~~-~~-~-~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 194 -P-LASLTSLHYFTAYVNQITDI-TP-V-ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp -G-GGGCTTCCEEECCSSCCCCC-GG-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred -c-ccCCCccceeecccCCCCCC-ch-h-hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 3 88899999999999999844 33 3 378999999999999985443 88999999999999999864 458899
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..| +..++
T Consensus 265 ~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp TTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSSCCCCGG--GGGCT
T ss_pred CCcCEEEccCCccCCC--------hhhcCCCCCCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCccccccC--hhhhh
Confidence 9999999999999875 237889999999999999998878878774 899999999999997655 88999
Q ss_pred CCCeEeCcCCcCc
Q 040495 394 NLNWLTMDSNLFT 406 (443)
Q Consensus 394 ~L~~L~L~~n~~~ 406 (443)
+|++|++++|.++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999986
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-33 Score=275.87 Aligned_cols=315 Identities=25% Similarity=0.307 Sum_probs=164.6
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .+.++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 456677777777665 4432 3566666666666553 2211 1456666666666663 55 3666666666666
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|++++ +|..+ .+|++|++++|.+++ +| .+.++++|++|++++|.+.+.... .++|++|++++|.+. .+
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-EL 230 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SC
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-cc
Confidence 6666653 44332 366666666666664 34 456666666666666665543321 135666666666655 34
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcc--ccchh--
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG--RVSVD-- 309 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~-- 309 (443)
| .+..+++|++|++++|.++ .+|. .+++|++|++++|++++ +|.. +++|++|++++|++++ ..|..
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~ 300 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLY 300 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCC
T ss_pred c-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCC
Confidence 4 2555666666666666655 2432 23455555555555553 3322 2344555555554443 11111
Q ss_pred -----------hhCC-CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEecc
Q 040495 310 -----------FSRL-KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMG 377 (443)
Q Consensus 310 -----------~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~ 377 (443)
+..+ ++|+.|++++|.+++... .+++|++|++++|+++ .+|. .+++|+.|+++
T Consensus 301 ~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~----------~~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~ 365 (454)
T 1jl5_A 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----------LPPRLERLIASFNHLA-EVPE----LPQNLKQLHVE 365 (454)
T ss_dssp EEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECC
T ss_pred EEECcCCcCCcccCCcCcCCEEECCCCccccccc----------cCCcCCEEECCCCccc-cccc----hhhhccEEECC
Confidence 1123 478888888888876432 2589999999999999 6777 25799999999
Q ss_pred CCcCee--cCchhhhcC-------------CCCCeEeCcCCcCcc--cCchhhcCCCCCCEEEccCCcCcccCCccccC
Q 040495 378 RNRISG--TIPPGIRSH-------------ANLNWLTMDSNLFTG--TIPPVIGELKNLQLLDLGGNFLQGSIPSSLGN 439 (443)
Q Consensus 378 ~n~l~~--~~p~~l~~~-------------~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 439 (443)
+|++++ .+|.++..+ ++|++|++++|++++ .+|. +++.|.+.+|.+.+.+|.+...
T Consensus 366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCC----------------------------------------------------------
T ss_pred CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence 999998 788888877 889999999999996 6664 4677889999999888765543
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.6e-33 Score=289.40 Aligned_cols=351 Identities=18% Similarity=0.181 Sum_probs=272.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|+|++|.+++..+.+|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 57999999999999888888999999999999999999777788999999999999999999777778999999999999
Q ss_pred cCCcccc-cCCccccCCcCccEeeeeccccCccCCccccCCCCC---------------------------CEEEccCCc
Q 040495 154 DTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL---------------------------LAFDVRENI 205 (443)
Q Consensus 154 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---------------------------~~L~l~~n~ 205 (443)
++|.+++ ..|..++.+++|++|++++|.+++..+..+..+.++ +.+++.+|.
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 9999975 467888999999999999999886655544322211 112222110
Q ss_pred CCc-----------------------------------------------------------------------------
Q 040495 206 LWG----------------------------------------------------------------------------- 208 (443)
Q Consensus 206 l~~----------------------------------------------------------------------------- 208 (443)
...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 000
Q ss_pred ----ccccccCCCCCCEEEcccccCCCCCC-------------------ccccCCCCCcEEEcccCcCcc--cCChhh--
Q 040495 209 ----RIDSLVQLRNLRLLDIAFNHFSGMIP-------------------PPIFNISSLEVISLSENRFTG--SLPVDA-- 261 (443)
Q Consensus 209 ----~~~~l~~l~~L~~L~l~~n~~~~~~~-------------------~~l~~l~~L~~L~l~~n~l~~--~~~~~~-- 261 (443)
....+.....++.|++.+|.+.+..+ .....+++|+.+++++|.+.. ..+...
T Consensus 316 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 316 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp CEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred cccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhh
Confidence 00011223356666666665443211 122346778888888876642 122111
Q ss_pred --------------------hcCCCCCcEEeCCCCcCCccC-CccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEE
Q 040495 262 --------------------GVNLPNLRQLSPNGNNFTGSI-PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLN 320 (443)
Q Consensus 262 --------------------~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 320 (443)
+..+++|+.+++..++..... +..+..+++++.++++.|.+.+..+..+..++.++.|+
T Consensus 396 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 396 TISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp CSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred hhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 124567777777777655443 35578899999999999999999999999999999999
Q ss_pred ccCCCCcc-cCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEe
Q 040495 321 MGINNLGT-RTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLT 399 (443)
Q Consensus 321 l~~n~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 399 (443)
+++|.+.. ..+ ..+..+++|++|++++|++++..|..+..+ ++|+.|+|++|++++..|..+..+++|++|+
T Consensus 476 Ls~N~~~~~~~~------~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 476 MAGNSFQENFLP------DIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp CTTCEEGGGEEC------SCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhcccccccCc------hhhhhccccCEEECCCCccCCcChHHHcCC-CCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 99997544 444 568899999999999999998778877775 8999999999999988888899999999999
Q ss_pred CcCCcCcccCchhhcCC-CCCCEEEccCCcCcc
Q 040495 400 MDSNLFTGTIPPVIGEL-KNLQLLDLGGNFLQG 431 (443)
Q Consensus 400 L~~n~~~~~~p~~~~~l-~~L~~L~l~~n~l~~ 431 (443)
|++|++++..|+.+..+ ++|++|++++|++..
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999899999888 689999999999874
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.8e-36 Score=299.59 Aligned_cols=355 Identities=17% Similarity=0.182 Sum_probs=254.4
Q ss_pred CcEEEEEcCCCCCcccccc-cccCCCCCCEEeCCCCcCCC----CCchhhcCCCccCeEEccCCCCCCCCChhhh-cCC-
Q 040495 74 QRVTRLDLRNQSIGGPLSP-YVGNLSFLRYINLANNGFLG----EIPPQIGRLNMLEGLVLSNNSFSGTIPTNLS-RRS- 146 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~-~l~- 146 (443)
.++++|+++++.++..... .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4678888888887654333 36778889999999888774 3566777888899999988888755444443 355
Q ss_pred ---CCceeeccCCcccc----cCCccccCCcCccEeeeeccccCccCCcccc-----CCCCCCEEEccCCcCCccc----
Q 040495 147 ---NLIELSVDTNYLVG----EIPSAIGSLFKLERLFIFHNHITGQLPASIG-----NLSSLLAFDVRENILWGRI---- 210 (443)
Q Consensus 147 ---~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~---- 210 (443)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68899999888873 4577788888899999988887754443332 2567889999888877643
Q ss_pred -ccccCCCCCCEEEcccccCCCCCCcccc-----CCCCCcEEEcccCcCccc----CChhhhcCCCCCcEEeCCCCcCCc
Q 040495 211 -DSLVQLRNLRLLDIAFNHFSGMIPPPIF-----NISSLEVISLSENRFTGS----LPVDAGVNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 211 -~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~ 280 (443)
..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+. .+++|++|++++|.+++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCCh
Confidence 3455678888899888887654333332 256888888888888743 344444 67888888888888765
Q ss_pred cC-----CccCcCCCCCCEEecccCcCccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhh-cCCCCCCEEE
Q 040495 281 SI-----PVSLSNASRLEMIEFSRNQFSGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL-ANCSKLERLY 350 (443)
Q Consensus 281 ~~-----~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~~~~~L~~L~ 350 (443)
.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+ ...+ ...++|++|+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l--~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL--CETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH--HHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH--HHHhccCCccceeeE
Confidence 32 22334578888888888888864 45567778888888888888765443111 1222 2336888888
Q ss_pred ccCCcCccc----CChhHhhhccCCCEEeccCCcCeecCchhhhc-----CCCCCeEeCcCCcCcc----cCchhhcCCC
Q 040495 351 FNRNRFQGV----LPQSMANFSSTIKQIAMGRNRISGTIPPGIRS-----HANLNWLTMDSNLFTG----TIPPVIGELK 417 (443)
Q Consensus 351 l~~n~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-----~~~L~~L~L~~n~~~~----~~p~~~~~l~ 417 (443)
+++|.+++. ++..+.. .++|+.|++++|++++..+..+.. .++|++|++++|.+++ .+|..+..++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred cCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 888888765 3444444 378888888888888765555543 6788888888888885 6788888888
Q ss_pred CCCEEEccCCcCccc
Q 040495 418 NLQLLDLGGNFLQGS 432 (443)
Q Consensus 418 ~L~~L~l~~n~l~~~ 432 (443)
+|++|++++|++++.
T Consensus 399 ~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 399 SLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCEEECCSSSCCHH
T ss_pred CccEEECCCCCCCHH
Confidence 888888888888754
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7e-34 Score=266.19 Aligned_cols=252 Identities=27% Similarity=0.450 Sum_probs=159.9
Q ss_pred CCCceeeccCCcccc--cCCccccCCcCccEeeeec-cccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEE
Q 040495 146 SNLIELSVDTNYLVG--EIPSAIGSLFKLERLFIFH-NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLL 222 (443)
Q Consensus 146 ~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L 222 (443)
.++++|++++|.+.+ .+|..++++++|++|++++ |.+.+.+|..+.++++|++|++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~------------------- 110 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH------------------- 110 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-------------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC-------------------
Confidence 356666666666665 5666666666666666663 566555565555555555555554
Q ss_pred EcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCC-CCCEEecccCc
Q 040495 223 DIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNAS-RLEMIEFSRNQ 301 (443)
Q Consensus 223 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~l~~n~ 301 (443)
|.+.+.+|..+.++++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|+
T Consensus 111 ----n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 111 ----TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ----ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ----CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 444444455555555555555555555555554444 455555555555555555555555555 56666666666
Q ss_pred CccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcC
Q 040495 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRI 381 (443)
Q Consensus 302 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l 381 (443)
+++..|..+..++ |+.|++++|.+++..+ ..+..+++|++|++++|++++.+|. +.. .++|+.|++++|++
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~-~~~-l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDAS------VLFGSDKNTQKIHLAKNSLAFDLGK-VGL-SKNLNGLDLRNNRI 256 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCG------GGCCTTSCCSEEECCSSEECCBGGG-CCC-CTTCCEEECCSSCC
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCC------HHHhcCCCCCEEECCCCceeeecCc-ccc-cCCCCEEECcCCcc
Confidence 6666666565555 6666666666665544 4556666777777777777655544 333 36788888888888
Q ss_pred eecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCc-Ccc
Q 040495 382 SGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNF-LQG 431 (443)
Q Consensus 382 ~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~ 431 (443)
++.+|..+..+++|++|++++|+++|.+|+. ..+++|+.+++++|+ +.|
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 8788888888888888888888888888876 677888888888887 555
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.5e-32 Score=259.57 Aligned_cols=266 Identities=21% Similarity=0.266 Sum_probs=123.1
Q ss_pred ccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc
Q 040495 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 202 (443)
+|++|++++|.+++..|..+.++++|++|++++|.+++..|..++.+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 4444444444444333334444444444444444444333444444444444444444444 2332222 334444444
Q ss_pred CCcCCccc-ccccCCCCCCEEEcccccCC--CCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCC
Q 040495 203 ENILWGRI-DSLVQLRNLRLLDIAFNHFS--GMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279 (443)
Q Consensus 203 ~n~l~~~~-~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 279 (443)
+|.+.... ..+..+++|++|++++|.+. +..+..+..+ +|++|++++|.++ .+|..+. ++|++|++++|.++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQ 206 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCC
Confidence 44333333 22344444444455444443 2333444444 5555555555554 3443321 45555555555555
Q ss_pred ccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCccc
Q 040495 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV 359 (443)
Q Consensus 280 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 359 (443)
+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+ + .
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l------------------------------~-~ 255 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL------------------------------S-R 255 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC------------------------------C-B
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC------------------------------e-e
Confidence 44444555555555555555555544444444444444444444444 4 3
Q ss_pred CChhHhhhccCCCEEeccCCcCeecCchhhhc------CCCCCeEeCcCCcCc--ccCchhhcCCCCCCEEEccCCc
Q 040495 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRS------HANLNWLTMDSNLFT--GTIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 360 ~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------~~~L~~L~L~~n~~~--~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
+|..+..+ ++|+.|++++|++++..+..+.. ..+|+.+++++|++. +..|..+..+++|+.+++++|+
T Consensus 256 lp~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLPDL-KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTGGGC-TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhhhcC-ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 44443332 44444444444444332222222 245666777777665 4455566667777777777664
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.2e-32 Score=258.55 Aligned_cols=279 Identities=19% Similarity=0.239 Sum_probs=194.8
Q ss_pred ccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc
Q 040495 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 202 (443)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5777777777776 5565542 577888888888776666677777788888887777776666666666666666666
Q ss_pred CCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCC--c
Q 040495 203 ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT--G 280 (443)
Q Consensus 203 ~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~--~ 280 (443)
+|.+...+. .+. ++|++|++++|.++ .+|...+..+++|++|++++|.++ +
T Consensus 111 ~n~l~~l~~------------------------~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 111 KNHLVEIPP------------------------NLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp SSCCCSCCS------------------------SCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CCcCCccCc------------------------ccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCC
Confidence 665553332 222 44555555555554 333333335555556666555553 2
Q ss_pred cCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccC
Q 040495 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360 (443)
Q Consensus 281 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 360 (443)
..+..+..+ +|++|++++|++++ +|..+. ++|+.|++++|.+++..+ ..+..+++|++|++++|++++..
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~------~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIEL------EDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCT------TSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCH------HHhcCCCCCCEEECCCCcCCcCC
Confidence 445555555 67777777777665 333332 577788888887777665 45778888999999999998666
Q ss_pred ChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcC------CCCCCEEEccCCcCc--cc
Q 040495 361 PQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGE------LKNLQLLDLGGNFLQ--GS 432 (443)
Q Consensus 361 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~------l~~L~~L~l~~n~l~--~~ 432 (443)
+..+.. .++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..+.. .++|+.|++++|++. +.
T Consensus 234 ~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 234 NGSLSF-LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp TTGGGG-CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred hhHhhC-CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence 666666 489999999999999 88999999999999999999999665566654 367899999999987 55
Q ss_pred CCccccCCCCC
Q 040495 433 IPSSLGNLTLL 443 (443)
Q Consensus 433 ~p~~~~~l~~L 443 (443)
.|..|..++.|
T Consensus 312 ~~~~~~~l~~L 322 (332)
T 2ft3_A 312 QPATFRCVTDR 322 (332)
T ss_dssp CGGGGTTBCCS
T ss_pred Ccccccccchh
Confidence 66667766553
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5e-32 Score=255.86 Aligned_cols=288 Identities=22% Similarity=0.287 Sum_probs=174.9
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIF 178 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 178 (443)
+++.++++++.++ .+|..+. +.+++|++++|.+++..+..+.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6788888888877 5665443 578888888888887666678888888888888888887778888888888888888
Q ss_pred ccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCC--CCCccccCCCCCcEEEcccCcCcc
Q 040495 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSG--MIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~ 255 (443)
+|.++ .+|..+. ++|++|++++|.+.+.. ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 88877 4555443 56777777776666555 445666666666666666542 34445555555666666555555
Q ss_pred cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchh
Q 040495 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.+|..+ .++|++|++++|++++..|..+..+++|++|++++|.+++..+..+.
T Consensus 185 ~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------------------------ 237 (330)
T 1xku_A 185 TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA------------------------ 237 (330)
T ss_dssp SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG------------------------
T ss_pred cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc------------------------
Confidence 344332 14455555555555444444444444455555544444444443444
Q ss_pred hHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhh------cCCCCCeEeCcCCcCcc--
Q 040495 336 FINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIR------SHANLNWLTMDSNLFTG-- 407 (443)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~------~~~~L~~L~L~~n~~~~-- 407 (443)
.+++|++|++++|+++ .+|.++..+ ++|+.|++++|++++..+..+. ....++.+++++|++..
T Consensus 238 ------~l~~L~~L~L~~N~l~-~lp~~l~~l-~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 238 ------NTPHLRELHLNNNKLV-KVPGGLADH-KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ------GSTTCCEEECCSSCCS-SCCTTTTTC-SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred ------CCCCCCEEECCCCcCc-cCChhhccC-CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 4455555555555554 444444442 4555555555555533333332 23567777777777652
Q ss_pred cCchhhcCCCCCCEEEccCCc
Q 040495 408 TIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 408 ~~p~~~~~l~~L~~L~l~~n~ 428 (443)
..|..+..+.+++.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 345567777777888887774
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.9e-32 Score=255.37 Aligned_cols=271 Identities=19% Similarity=0.219 Sum_probs=221.7
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccC
Q 040495 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155 (443)
Q Consensus 76 v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 155 (443)
++.++++++.+.. +|..+ .+++++|++++|.+++..+..++++++|++|++++|.+++..|..+.++++|++|++++
T Consensus 33 l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4466777776653 45433 36899999999999987777899999999999999999988899999999999999999
Q ss_pred CcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCc--cc-ccccCCCCCCEEEcccccCCCC
Q 040495 156 NYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG--RI-DSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 156 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. .. ..+..+++|++|++++|.+..
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 9998 6776554 799999999999998777789999999999999998864 33 678889999999999999984
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
+|..+. ++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 555544 7999999999999965555555 8999999999999999887878999999999999999999 67777889
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
+++|++|++++|.+++..+..+..........+++.|++++|++.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 999999999999998876632211111112345566666666554
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.7e-34 Score=285.48 Aligned_cols=360 Identities=15% Similarity=0.103 Sum_probs=283.1
Q ss_pred CcEEEEEcCCCCCcc----cccccccCCCCCCEEeCCCCcCCCCCchhhc-CCC----ccCeEEccCCCCCC----CCCh
Q 040495 74 QRVTRLDLRNQSIGG----PLSPYVGNLSFLRYINLANNGFLGEIPPQIG-RLN----MLEGLVLSNNSFSG----TIPT 140 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~----~L~~L~l~~n~~~~----~~p~ 140 (443)
.+++.|+++++.+.+ .++..+..+++|++|++++|.+.+..+..+. .++ +|++|++++|.++. .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 468899999999875 3566788899999999999998765444443 455 79999999999984 4588
Q ss_pred hhhcCCCCceeeccCCcccccCCccc-----cCCcCccEeeeeccccCccC----CccccCCCCCCEEEccCCcCCccc-
Q 040495 141 NLSRRSNLIELSVDTNYLVGEIPSAI-----GSLFKLERLFIFHNHITGQL----PASIGNLSSLLAFDVRENILWGRI- 210 (443)
Q Consensus 141 ~l~~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~- 210 (443)
.+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++.. +..+..+++|++|++++|.+....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 88999999999999999875444333 23568999999999998643 556677899999999999886543
Q ss_pred cccc-----CCCCCCEEEcccccCCCC----CCccccCCCCCcEEEcccCcCcccC----ChhhhcCCCCCcEEeCCCCc
Q 040495 211 DSLV-----QLRNLRLLDIAFNHFSGM----IPPPIFNISSLEVISLSENRFTGSL----PVDAGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 211 ~~l~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~ 277 (443)
..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. ...+...+++|++|++++|+
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 3332 356999999999999864 4667778899999999999987432 22333357899999999999
Q ss_pred CCcc----CCccCcCCCCCCEEecccCcCccccchhhhC-----CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCE
Q 040495 278 FTGS----IPVSLSNASRLEMIEFSRNQFSGRVSVDFSR-----LKNLSFLNMGINNLGTRTANELDFINLLANCSKLER 348 (443)
Q Consensus 278 l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~ 348 (443)
+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++.... .+...+..+++|++
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS--HFSSVLAQNRFLLE 345 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--HHHHHHHHCSSCCE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH--HHHHHHhhCCCccE
Confidence 9864 6777888999999999999998765554433 37999999999998876432 23366788899999
Q ss_pred EEccCCcCcccCChhHhhh----ccCCCEEeccCCcCee----cCchhhhcCCCCCeEeCcCCcCcccCchhhc-----C
Q 040495 349 LYFNRNRFQGVLPQSMANF----SSTIKQIAMGRNRISG----TIPPGIRSHANLNWLTMDSNLFTGTIPPVIG-----E 415 (443)
Q Consensus 349 L~l~~n~l~~~~p~~~~~~----~~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~-----~ 415 (443)
|++++|++++..+..+... .++|+.|++++|++++ .+|..+..+++|++|++++|++++.-...+. .
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 425 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence 9999999987666655542 3689999999999997 6888999999999999999999855322222 2
Q ss_pred CCCCCEEEccCCcCcccCCc
Q 040495 416 LKNLQLLDLGGNFLQGSIPS 435 (443)
Q Consensus 416 l~~L~~L~l~~n~l~~~~p~ 435 (443)
..+|+.|++.++.+....++
T Consensus 426 ~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 426 GCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp TCCCCEEECTTCCCCHHHHH
T ss_pred CcchhheeecccccCHHHHH
Confidence 45799999999888755444
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=249.16 Aligned_cols=285 Identities=16% Similarity=0.178 Sum_probs=205.9
Q ss_pred CCCCCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCC
Q 040495 55 WNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSF 134 (443)
Q Consensus 55 w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 134 (443)
|......|.|.++ |+ .+++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 23 ~~~~~~~C~~~~~-c~----------~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-CK----------GSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-EE----------CCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-ee----------CCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 3333456888775 53 34555543 444333 5899999999998876666889999999999999999
Q ss_pred CCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCC-ccccCCCCCCEEEccCCc-CCccc-c
Q 040495 135 SGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENI-LWGRI-D 211 (443)
Q Consensus 135 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~-~ 211 (443)
++..|..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..+ ..+..+++|++|++++|. +.... .
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 87778888899999999999999885444448889999999999998884333 367888999999998884 55554 6
Q ss_pred cccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccC---cC
Q 040495 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL---SN 288 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~ 288 (443)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|......+++|++|++++|.+++..+..+ ..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 7788889999999999988888888888999999999999886 6676665568889999999988876544332 23
Q ss_pred CCCCCEEecccCcCcc----ccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccC
Q 040495 289 ASRLEMIEFSRNQFSG----RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 360 (443)
...++.++++++.+++ .+|..+..+++|+.|++++|.++.... ..+..+++|++|++++|++.+..
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCBCCCH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------HHHhcCCCCCEEEeeCCCccCcC
Confidence 4566677777776665 245556666666666666666664333 33456666666666666666443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1e-29 Score=237.40 Aligned_cols=249 Identities=18% Similarity=0.210 Sum_probs=130.3
Q ss_pred CEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccc--cCCccccCCcCccEeeee
Q 040495 101 RYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVG--EIPSAIGSLFKLERLFIF 178 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~ 178 (443)
+.++++++.++ .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.++. ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666665 4554332 467777777777763333345666777777777766652 224444455666666666
Q ss_pred ccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCC-ccccCCCCCcEEEcccCcCcccC
Q 040495 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP-PPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~ 257 (443)
+|.++ .+|..+..+++|++|++++|.+.+.. + ..+..+++|++|++++|.+++..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS-----------------------EFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESST-----------------------TTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccc-----------------------cchhhhhccCCCEEECCCCcCCccc
Confidence 66555 33444445555555555444443332 2 23444444555555555444333
Q ss_pred ChhhhcCCCCCcEEeCCCCcCCc-cCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhh
Q 040495 258 PVDAGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF 336 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 336 (443)
+..+. .+++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+
T Consensus 143 ~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 216 (306)
T 2z66_A 143 NGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT----- 216 (306)
T ss_dssp TTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-----
T ss_pred hhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-----
Confidence 32222 44555555555555543 344455555555555555555555555555555555555555555555443
Q ss_pred HhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCee
Q 040495 337 INLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISG 383 (443)
Q Consensus 337 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 383 (443)
..+..+++|++|++++|++++..|..+..++++|+.|++++|++++
T Consensus 217 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 217 -FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp -GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred -hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 2344555555555555555554444444432355555555555554
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.7e-29 Score=234.56 Aligned_cols=285 Identities=21% Similarity=0.253 Sum_probs=186.2
Q ss_pred CCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCC--C
Q 040495 61 LCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGT--I 138 (443)
Q Consensus 61 ~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~ 138 (443)
.|.|.++.|.. ++++. +|..+ .+++++|++++|.++...+..++++++|++|++++|.++.. .
T Consensus 6 ~C~~~~l~c~~------------~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 6 SCSGTEIRCNS------------KGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp EEETTEEECCS------------SCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred eeCCCEEEcCC------------CCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence 36777777754 33332 34322 36899999999999854455579999999999999999833 3
Q ss_pred ChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCC-ccccCCCCCCEEEccCCcCCcccccccCCC
Q 040495 139 PTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENILWGRIDSLVQLR 217 (443)
Q Consensus 139 p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~ 217 (443)
|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------- 141 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-------- 141 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC--------
T ss_pred ccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc--------
Confidence 778888999999999999998 678889999999999999999986544 4566666666666666655443
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcc-cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEe
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG-SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIE 296 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 296 (443)
.+..+..+++|++|++++|.+++ .+|..+. .+++|++|++++|++++..|..+..+++|++|+
T Consensus 142 ---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 142 ---------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp ---------------STTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ---------------chhhcccCcCCCEEECCCCccccccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 33444444555555555555443 2333322 455666666666666655555666666666666
Q ss_pred cccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCC-CCCCEEEccCCcCcccCC-hhHhhhccCCCEE
Q 040495 297 FSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANC-SKLERLYFNRNRFQGVLP-QSMANFSSTIKQI 374 (443)
Q Consensus 297 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p-~~~~~~~~~L~~L 374 (443)
+++|++++..+..+..+++|+.|++++|.+++..+ ..+..+ ++|++|++++|++++.-+ .++..+....+.+
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~ 279 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK------QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 279 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS------SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGG
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCH------HHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhh
Confidence 66666666555556666777777777777666655 335555 367777777777764322 1222222334445
Q ss_pred eccCCcCeecCchhhhc
Q 040495 375 AMGRNRISGTIPPGIRS 391 (443)
Q Consensus 375 ~L~~n~l~~~~p~~l~~ 391 (443)
.+..+.+....|..+..
T Consensus 280 ~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 280 LVEVERMECATPSDKQG 296 (306)
T ss_dssp BSCGGGCBEEESGGGTT
T ss_pred hccccccccCCchhhCC
Confidence 55556666566665544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.6e-30 Score=244.07 Aligned_cols=288 Identities=17% Similarity=0.157 Sum_probs=184.8
Q ss_pred cCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCE
Q 040495 119 GRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLA 198 (443)
Q Consensus 119 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 198 (443)
..++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34555667888888888 6776554 58999999999988665667888999999999999888777777888888888
Q ss_pred EEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCC-ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCC
Q 040495 199 FDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIP-PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN 276 (443)
Q Consensus 199 L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n 276 (443)
|++++|.+++.. ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|...+.++...+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 888888887766 447778888888888888774333 366777788888887774222444333336677777777777
Q ss_pred cCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcC
Q 040495 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRF 356 (443)
Q Consensus 277 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 356 (443)
++++..|..+..+++|++|++++|++.......+..+++|+.|++++|.+++..+..+. .......++.++++++.+
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS---TGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEEEESCBC
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc---cccccchhhccccccccc
Confidence 77766666777777777777777776543333344566666666666666654442211 122334444444444444
Q ss_pred cccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchh-hcCCCCCCEEEccCCcCcccCC
Q 040495 357 QGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPV-IGELKNLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 357 ~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p 434 (443)
++. .+. .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 262 ~~~--------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 262 TDE--------------------SLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CHH--------------------HHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCc--------------------chh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 321 000 24455555555666666666555 44443 3555556666666665555443
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.1e-29 Score=234.03 Aligned_cols=236 Identities=19% Similarity=0.238 Sum_probs=185.6
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
..+++++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 88888999999999999999999 88999999999999999999998 889999999999999
Q ss_pred eeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcc
Q 040495 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 255 (443)
++++|.+.+.+|..+... . ....+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~------~--------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST------D--------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE------C---------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred ECCCCCCccccChhHhhc------c--------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 999998888888766531 0 0123455667777777777776 66667777777777777777777
Q ss_pred cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchh
Q 040495 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.+|..+. .+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|
T Consensus 220 ~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP---- 294 (328)
T 4fcg_A 220 ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP---- 294 (328)
T ss_dssp CCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC----
T ss_pred cCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc----
Confidence 4555544 67777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHhhhcCCCCCCEEEccCCcCc
Q 040495 336 FINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
..+..+++|+.+++..+.+.
T Consensus 295 --~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 295 --SLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp --GGGGGSCTTCEEECCGGGSC
T ss_pred --HHHhhccCceEEeCCHHHHH
Confidence 56777777777777766554
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3e-28 Score=225.03 Aligned_cols=255 Identities=20% Similarity=0.222 Sum_probs=147.4
Q ss_pred CEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeecc
Q 040495 101 RYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHN 180 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 180 (443)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 55666666665 445432 346667777776666555555666666666666666666555556666666666666666
Q ss_pred c-cCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCCh
Q 040495 181 H-ITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 181 ~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 259 (443)
. ++...|..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.++ .++.
T Consensus 91 ~~l~~~~~~~~~~-----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 146 (285)
T 1ozn_A 91 AQLRSVDPATFHG-----------------------LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD 146 (285)
T ss_dssp TTCCCCCTTTTTT-----------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CCccccCHHHhcC-----------------------CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCH
Confidence 4 44333444444 445555555555555444555555666666666666655 3333
Q ss_pred hhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhh
Q 040495 260 DAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINL 339 (443)
Q Consensus 260 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 339 (443)
..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+++..+ ..
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~ 220 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------EA 220 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH------HH
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH------HH
Confidence 333356666666666666664444456666666666666666666666666666666666666666665544 44
Q ss_pred hcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhh
Q 040495 340 LANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIR 390 (443)
Q Consensus 340 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 390 (443)
+..+++|++|++++|++....+... +...++.+..+.+.+....|..+.
T Consensus 221 ~~~l~~L~~L~l~~N~~~c~~~~~~--~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVCDCRARP--LWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HTTCTTCCEEECCSSCEECSGGGHH--HHHHHHHCCSEECCCBEEESGGGT
T ss_pred cccCcccCEEeccCCCccCCCCcHH--HHHHHHhcccccCccccCCchHhC
Confidence 6666677777777776653322211 112244444555666655665543
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.3e-27 Score=241.92 Aligned_cols=297 Identities=22% Similarity=0.265 Sum_probs=233.6
Q ss_pred CCCCCCCCCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEcc
Q 040495 51 VTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLS 130 (443)
Q Consensus 51 ~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 130 (443)
++..|....++|.|.|..+... ....+....+++|++++|.++ .+|..+. ++|++|+++
T Consensus 11 ~w~~W~~~~~~~~~~~r~~~~~------------------~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~ 69 (622)
T 3g06_A 11 VWSAWRRAAPAEESRGRAAVVQ------------------KMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIP 69 (622)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHH------------------HHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEEC
T ss_pred HHHHHHhcCCcchhccccccCc------------------ccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEec
Confidence 4456777777888876433110 001122246899999999998 7787665 799999999
Q ss_pred CCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc
Q 040495 131 NNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI 210 (443)
Q Consensus 131 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 210 (443)
+|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++++|.++..+
T Consensus 70 ~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp 137 (622)
T 3g06_A 70 DNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLP 137 (622)
T ss_dssp SCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred CCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCC
Confidence 99998 5666 5789999999999998 5666 67899999999999984 454 6788999999999888755
Q ss_pred ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCC
Q 040495 211 DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNAS 290 (443)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 290 (443)
.. +++|++|++++|.+++ +|. ..++|+.|++++|.++ .+| ..+++|+.|++++|++++ +|.. .+
T Consensus 138 ~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~ 201 (622)
T 3g06_A 138 VL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PS 201 (622)
T ss_dssp CC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cc
Confidence 43 4889999999999875 443 3468899999999998 577 257899999999999984 5543 47
Q ss_pred CCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccC
Q 040495 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSST 370 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 370 (443)
+|+.|++++|.++. +|. .+++|+.|++++|.+++.. ..+++|++|++++|+++ .+|. .+++
T Consensus 202 ~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp----------~~l~~L~~L~Ls~N~L~-~lp~----~~~~ 262 (622)
T 3g06_A 202 ELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP----------VLPSELKELMVSGNRLT-SLPM----LPSG 262 (622)
T ss_dssp TCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSCCS-CCCC----CCTT
T ss_pred hhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC----------CCCCcCcEEECCCCCCC-cCCc----cccc
Confidence 89999999999884 343 3478999999999888743 24578999999999998 6776 2478
Q ss_pred CCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCC
Q 040495 371 IKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL 416 (443)
Q Consensus 371 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l 416 (443)
|+.|++++|+++ .+|..+..+++|+.|+|++|.+++..|..+..+
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 999999999998 788889999999999999999998888766543
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.7e-28 Score=248.35 Aligned_cols=269 Identities=25% Similarity=0.311 Sum_probs=225.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35789999999997 5666554 89999999999998 5665 6789999999999998 5666 6799999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.++ .+|. .+++|+.|++++|.+++ +|.. +++|++|++++|.+.+... .+++|+.|++++|.+++ +
T Consensus 109 s~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 109 FSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-C
T ss_pred cCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-C
Confidence 999998 4555 56899999999999984 5653 4899999999998887543 35789999999999985 5
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +| ..+
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred c---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 5 45789999999999998 5664 3589999999999998 55543 4789999999999996 44 467
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
++|+.|++++|.++.... .+++|+.|++++|+++ .+|..+..+ ++|+.|++++|++++..|..+..++
T Consensus 241 ~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~Ls~N~L~-~lp~~l~~l-~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM----------LPSGLLSLSVYRNQLT-RLPESLIHL-SSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCC-SCCGGGGGS-CTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCCcCCc----------ccccCcEEeCCCCCCC-cCCHHHhhc-cccCEEEecCCCCCCcCHHHHHhcc
Confidence 899999999999986433 5689999999999999 889888875 8999999999999998888776443
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=6.2e-30 Score=239.40 Aligned_cols=255 Identities=18% Similarity=0.205 Sum_probs=142.0
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCC-CCCCChhhh-------cCCCCceeeccCCcccccCCcc
Q 040495 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSF-SGTIPTNLS-------RRSNLIELSVDTNYLVGEIPSA 165 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~-~~~~p~~l~-------~l~~L~~L~l~~n~l~~~~p~~ 165 (443)
++..++|++|++++|.+ .+|..+... |++|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34455666677777666 556555443 66666666666 334555444 5666666666666666666655
Q ss_pred c--cCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCC
Q 040495 166 I--GSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSL 243 (443)
Q Consensus 166 l--~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 243 (443)
+ +.+++|++|++++|.+++. |..+..+.. ...++|++|++++|.+.+..+..+..+++|
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~------------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ------------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT------------------TCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHH------------------hhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4 5666666666666666644 544443300 001455555555555555444555555566
Q ss_pred cEEEcccCcCcccC--Chhh-hcCCCCCcEEeCCCCcCCc--cCC-ccCcCCCCCCEEecccCcCccccc-hhhhCCCCC
Q 040495 244 EVISLSENRFTGSL--PVDA-GVNLPNLRQLSPNGNNFTG--SIP-VSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNL 316 (443)
Q Consensus 244 ~~L~l~~n~l~~~~--~~~~-~~~~~~L~~L~L~~n~l~~--~~~-~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L 316 (443)
++|++++|.+.+.+ +..+ +..+++|++|++++|++++ .++ ..+..+++|++|++++|++++..| ..+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 66666665554331 2122 1245666666666666552 111 223455666666666666665543 334455666
Q ss_pred CEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCee
Q 040495 317 SFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISG 383 (443)
Q Consensus 317 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 383 (443)
++|++++|.++.. | ..+. ++|++|++++|++++. |. +.. .++|+.|++++|++++
T Consensus 256 ~~L~Ls~N~l~~i-p------~~~~--~~L~~L~Ls~N~l~~~-p~-~~~-l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 256 NSLNLSFTGLKQV-P------KGLP--AKLSVLDLSYNRLDRN-PS-PDE-LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEECTTSCCSSC-C------SSCC--SEEEEEECCSSCCCSC-CC-TTT-SCEEEEEECTTCTTTC
T ss_pred CEEECCCCccChh-h------hhcc--CCceEEECCCCCCCCC-hh-Hhh-CCCCCEEeccCCCCCC
Confidence 6666666666632 2 1122 5677777777777643 54 444 3667777777777664
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.7e-27 Score=233.06 Aligned_cols=248 Identities=21% Similarity=0.217 Sum_probs=197.1
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCc
Q 040495 78 RLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 157 (443)
.++.++.+++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 58 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34445555543 444332 689999999999998888999999999999999999998888899999999999999999
Q ss_pred ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCC-cCCccc-ccccCCCCCCEEEcccccCCCCCCc
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
+++..+..+..+++|++|++++|.++...+..+.++++|++|++++| .+.... ..+..+++|++|++++|.+.+. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 99666667889999999999999998766677889999999999885 444333 4677888888888888888743 3
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+..+++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 477778888888888888754454444 7788888888888888777777888888888888888888766667777888
Q ss_pred CCEEEccCCCCcccCC
Q 040495 316 LSFLNMGINNLGTRTA 331 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~ 331 (443)
|+.|++++|.+.....
T Consensus 292 L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCEEECCSSCEECSTT
T ss_pred CCEEEccCCCcCCCCC
Confidence 8888888887766543
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.3e-27 Score=232.46 Aligned_cols=245 Identities=16% Similarity=0.168 Sum_probs=140.8
Q ss_pred CceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEccc
Q 040495 148 LIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAF 226 (443)
Q Consensus 148 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~ 226 (443)
...++.++..++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+.. ..+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456777777776 5666543 57888888888888777777777777777777777776655 5566666777777777
Q ss_pred ccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCC-cCCccCCccCcCCCCCCEEecccCcCccc
Q 040495 227 NHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN-NFTGSIPVSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 227 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
|.+++..+..+..+++|++|++++|.++ .+|...+..+++|++|++++| .+....+..+..+++|++|++++|++++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7666555555666666666666666665 444444445666666666653 33322223455555555555555555532
Q ss_pred cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecC
Q 040495 306 VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 306 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~ 385 (443)
| .+..+++|+.|++++|.+++..+ ..+.++++|++|++++|++++..|..+..+ ++|+.|+|++|++++..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRP------GSFHGLSSLKKLWVMNSQVSLIERNAFDGL-ASLVELNLAHNNLSSLP 282 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECG------GGGTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCSCCC
T ss_pred -c-cccccccccEEECcCCcCcccCc------ccccCccCCCEEEeCCCcCceECHHHhcCC-CCCCEEECCCCcCCccC
Confidence 2 24445555555555555554444 344455555555555555554434433332 44555555555555333
Q ss_pred chhhhcCCCCCeEeCcCCcC
Q 040495 386 PPGIRSHANLNWLTMDSNLF 405 (443)
Q Consensus 386 p~~l~~~~~L~~L~L~~n~~ 405 (443)
+..+..+++|+.|+|++|++
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCE
T ss_pred hHHhccccCCCEEEccCCCc
Confidence 33344445555555555544
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.3e-30 Score=242.31 Aligned_cols=268 Identities=17% Similarity=0.198 Sum_probs=174.1
Q ss_pred CCCCCCCCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcC-CCCCchhhc-------CCCc
Q 040495 52 TSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGF-LGEIPPQIG-------RLNM 123 (443)
Q Consensus 52 ~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~l~-------~l~~ 123 (443)
..+|.....|+.+..+.......+++.++++++.+ .+|..+... |++|++++|.+ ...+|..+. ++++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 96 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG 96 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC
Confidence 34676555555565543322225678888899988 567655544 99999999998 446777766 8999
Q ss_pred cCeEEccCCCCCCCCChhh--hcCCCCceeeccCCcccccCCccccCC-----cCccEeeeeccccCccCCccccCCCCC
Q 040495 124 LEGLVLSNNSFSGTIPTNL--SRRSNLIELSVDTNYLVGEIPSAIGSL-----FKLERLFIFHNHITGQLPASIGNLSSL 196 (443)
Q Consensus 124 L~~L~l~~n~~~~~~p~~l--~~l~~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L 196 (443)
|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|.+++..|..+..+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 9999999999999999876 8999999999999999966 8777776 899999999999997777888888888
Q ss_pred CEEEccCCcCCccc---ccc--cCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEE
Q 040495 197 LAFDVRENILWGRI---DSL--VQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQL 271 (443)
Q Consensus 197 ~~L~l~~n~l~~~~---~~l--~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 271 (443)
++|++++|.+.+.. ..+ ..+++|++|++++|.+++. +.++..++..+++|++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP----------------------SGVCSALAAARVQLQGL 233 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH----------------------HHHHHHHHHTTCCCSEE
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch----------------------HHHHHHHHhcCCCCCEE
Confidence 88888888765532 222 5556666666666655421 01222222234444444
Q ss_pred eCCCCcCCccCC-ccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEE
Q 040495 272 SPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLY 350 (443)
Q Consensus 272 ~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 350 (443)
++++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. | . +..+++|++|+
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p------~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-P------S-PDELPQVGNLS 302 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-C------C-TTTSCEEEEEE
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-h------h-HhhCCCCCEEe
Confidence 444444443332 22333445555555555554 3333332 4555555555555544 2 1 44455555555
Q ss_pred ccCCcCc
Q 040495 351 FNRNRFQ 357 (443)
Q Consensus 351 l~~n~l~ 357 (443)
+++|+++
T Consensus 303 L~~N~l~ 309 (312)
T 1wwl_A 303 LKGNPFL 309 (312)
T ss_dssp CTTCTTT
T ss_pred ccCCCCC
Confidence 5555554
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3e-27 Score=231.96 Aligned_cols=247 Identities=21% Similarity=0.181 Sum_probs=197.7
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCc
Q 040495 78 RLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 157 (443)
.++.++..++. +|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 47 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 45555555543 454433 689999999999998888899999999999999999997778889999999999999999
Q ss_pred ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCc-CCccc-ccccCCCCCCEEEcccccCCCCCCc
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI-LWGRI-DSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
++...+..+..+++|++|++++|.++...+..+.++++|++|++++|. +.... ..+..+++|++|++++|.++. +|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-
Confidence 996666678999999999999999997777788899999999998854 44333 467788888888888888873 34
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+..+++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 477788888888888888754444443 7788888888888888777777888888888888888888777777778888
Q ss_pred CCEEEccCCCCcccC
Q 040495 316 LSFLNMGINNLGTRT 330 (443)
Q Consensus 316 L~~L~l~~n~l~~~~ 330 (443)
|+.|++++|.+...-
T Consensus 281 L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 281 LERIHLHHNPWNCNC 295 (440)
T ss_dssp CCEEECCSSCEECSS
T ss_pred CCEEEcCCCCccCCC
Confidence 888888888776554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-29 Score=237.08 Aligned_cols=246 Identities=17% Similarity=0.253 Sum_probs=159.5
Q ss_pred CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEc
Q 040495 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISL 248 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 248 (443)
+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ...++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE-----EECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc-----cCCCCcCEEEC
Confidence 3344444444444443333344444444444444444433222 44455555555555555421 12256777777
Q ss_pred ccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhh-hCCCCCCEEEccCCCCc
Q 040495 249 SENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDF-SRLKNLSFLNMGINNLG 327 (443)
Q Consensus 249 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~ 327 (443)
++|.+++ ++.. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.++
T Consensus 107 ~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 7776663 3322 35677788888887776666677777888888888888877666655 36788888888888877
Q ss_pred ccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc-
Q 040495 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT- 406 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~- 406 (443)
+... ...+++|++|++++|+++ .+|..+..+ ++|+.|++++|+++ .+|..+..+++|+.|++++|++.
T Consensus 183 ~~~~--------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l-~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 183 DVKG--------QVVFAKLKTLDLSSNKLA-FMGPEFQSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp EEEC--------CCCCTTCCEEECCSSCCC-EECGGGGGG-TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred cccc--------ccccccCCEEECCCCcCC-cchhhhccc-CcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 6643 334778888888888888 455556553 78888888888888 46777788888888888888887
Q ss_pred ccCchhhcCCCCCCEEEccC-CcCcccCCc
Q 040495 407 GTIPPVIGELKNLQLLDLGG-NFLQGSIPS 435 (443)
Q Consensus 407 ~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~ 435 (443)
+.+|..+..+++|+.+++++ +.+.|..|.
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cCHHHHHhccccceEEECCCchhccCCchh
Confidence 77777888888888888874 345555443
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.1e-28 Score=222.12 Aligned_cols=255 Identities=18% Similarity=0.165 Sum_probs=188.0
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCC
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 156 (443)
+.++.++++++. +|.. -.++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 577888887765 3432 3579999999999999877788999999999999999999888999999999999999999
Q ss_pred c-ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCc
Q 040495 157 Y-LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 157 ~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
. +....|..+..+++|++|++++|.+++..|..+.++++|++|++++|.+.. ..+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~ 147 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-----------------------LPDD 147 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-----------------------cCHh
Confidence 7 776668889999999999999999987666666666666666555554443 3334
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++
T Consensus 148 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred HhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 4555666666666666665 344433336777777777777777667777788888888888888888766667888888
Q ss_pred CCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHh
Q 040495 316 LSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMA 365 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 365 (443)
|+.|++++|.+....+.. .+... ++.+..+.+.+....|..+.
T Consensus 227 L~~L~l~~N~~~c~~~~~-~~~~~------l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRAR-PLWAW------LQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CCEEECCSSCEECSGGGH-HHHHH------HHHCCSEECCCBEEESGGGT
T ss_pred cCEEeccCCCccCCCCcH-HHHHH------HHhcccccCccccCCchHhC
Confidence 888888888877654421 11111 23333556677767776554
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.4e-29 Score=258.24 Aligned_cols=356 Identities=15% Similarity=0.117 Sum_probs=228.0
Q ss_pred CcEEEEEcCCCCCcccccccccC-CCC-CCEEeCCCCc-CCC-CCchhhcCCCccCeEEccCCCCCCC----CChhhhcC
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGN-LSF-LRYINLANNG-FLG-EIPPQIGRLNMLEGLVLSNNSFSGT----IPTNLSRR 145 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~L~~n~-~~~-~~~~~l~~l~~L~~L~l~~n~~~~~----~p~~l~~l 145 (443)
..+++|+++++.+.+..+..+.. ++. |++|++++|. ++. .++....++++|++|++++|.+++. ++..+..+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 45777777777666554444444 233 6666666654 111 1222233566666666666665544 22233455
Q ss_pred CCCceeeccCCccc----ccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc-------------------
Q 040495 146 SNLIELSVDTNYLV----GEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR------------------- 202 (443)
Q Consensus 146 ~~L~~L~l~~n~l~----~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~------------------- 202 (443)
++|++|++++|.++ +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 66666666666654 2233334455666666666665553 34444455555555554
Q ss_pred --------CCcCCcccccccCCCCCCEEEcccccCCCCCC-ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeC
Q 040495 203 --------ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP-PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSP 273 (443)
Q Consensus 203 --------~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 273 (443)
++........+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEe
Confidence 43222222444556777778887777553322 234667778888777 33332323333346788888888
Q ss_pred CC-----------CcCCcc-CCccCcCCCCCCEEecccCcCccccchhhhC-CCCCCEEEcc----CCCCcccCCCchhh
Q 040495 274 NG-----------NNFTGS-IPVSLSNASRLEMIEFSRNQFSGRVSVDFSR-LKNLSFLNMG----INNLGTRTANELDF 336 (443)
Q Consensus 274 ~~-----------n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~~~~~~~ 336 (443)
++ +.+++. ++.....+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++... +-.+
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~-~~~~ 428 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL-DNGV 428 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC-HHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH-HHHH
Confidence 83 455533 2233455888999999888888877777765 8899999996 566665432 1122
Q ss_pred HhhhcCCCCCCEEEccCCc--CcccCChhHhhhccCCCEEeccCCcCeec-CchhhhcCCCCCeEeCcCCcCccc-Cchh
Q 040495 337 INLLANCSKLERLYFNRNR--FQGVLPQSMANFSSTIKQIAMGRNRISGT-IPPGIRSHANLNWLTMDSNLFTGT-IPPV 412 (443)
Q Consensus 337 ~~~~~~~~~L~~L~l~~n~--l~~~~p~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~L~~n~~~~~-~p~~ 412 (443)
...+.++++|++|++++|. +++..+..+...+++|+.|++++|++++. ++..+..+++|++|++++|.+++. ++..
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 3456779999999998544 77666667766568999999999999874 566678899999999999998755 4455
Q ss_pred hcCCCCCCEEEccCCcCccc
Q 040495 413 IGELKNLQLLDLGGNFLQGS 432 (443)
Q Consensus 413 ~~~l~~L~~L~l~~n~l~~~ 432 (443)
...+++|++|++++|++++.
T Consensus 509 ~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTT
T ss_pred HHhcCccCeeECcCCcCCHH
Confidence 56789999999999999865
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=231.08 Aligned_cols=247 Identities=17% Similarity=0.221 Sum_probs=165.8
Q ss_pred CCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcc
Q 040495 147 NLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIA 225 (443)
Q Consensus 147 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~ 225 (443)
....++..+..++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+.... ..+..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456777777776 6776554 67888888888888777777888888888888888777666 667777788888888
Q ss_pred cccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCc-CCccCCccCcCCCCCCEEecccCcCcc
Q 040495 226 FNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN-FTGSIPVSLSNASRLEMIEFSRNQFSG 304 (443)
Q Consensus 226 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~l~~n~l~~ 304 (443)
+|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|+ +....+..+..+++|++|++++|+++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 88777655556777777777777777776 4555444467777777777743 333333456667777777777777663
Q ss_pred ccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeec
Q 040495 305 RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT 384 (443)
Q Consensus 305 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~ 384 (443)
+| .+..+++|+.|++++|.+++..+ ..+.++++|++|++++|++++..+..+..+ ++|+.|+|++|++++.
T Consensus 200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 200 -IP-NLTPLIKLDELDLSGNHLSAIRP------GSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTLL 270 (440)
T ss_dssp -CC-CCTTCSSCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTSCCCCC
T ss_pred -cc-ccCCCcccCEEECCCCccCccCh------hhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCCCCCcc
Confidence 23 25666666677776666666655 445666666666666666665545444443 5666666666666654
Q ss_pred CchhhhcCCCCCeEeCcCCcCc
Q 040495 385 IPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 385 ~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
.+..+..+++|+.|+|++|++.
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhHhccccCCCEEEcCCCCcc
Confidence 4455566666666666666554
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.9e-28 Score=228.56 Aligned_cols=258 Identities=16% Similarity=0.129 Sum_probs=137.3
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccC
Q 040495 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155 (443)
Q Consensus 76 v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 155 (443)
++..+++.+.+.......+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4444444444443333334444555555555555554444555555555555555555543322 44444555555544
Q ss_pred CcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCc
Q 040495 156 NYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 156 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
|.+++. ...++|++|++++|.+.+... ..+++|++|++++|.+++..+.
T Consensus 90 n~l~~l-----------------------------~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 90 NYVQEL-----------------------------LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp SEEEEE-----------------------------EECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGB
T ss_pred Cccccc-----------------------------cCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccch
Confidence 444311 122445555555554443331 1245566666666666655555
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+..+++|++|++++|.+++..+..+...+++|++|++++|.+++. +. ...+++|++|++++|++++..+ .+..+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~ 215 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAG 215 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCc
Confidence 6666667777777777666444444433466677777777766643 22 2236666777777666664433 3566666
Q ss_pred CCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc-ccCChhHhhhccCCCEEecc
Q 040495 316 LSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ-GVLPQSMANFSSTIKQIAMG 377 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~L~ 377 (443)
|+.|++++|.++... ..+..+++|++|++++|++. +.+|.++..+ +.|+.++++
T Consensus 216 L~~L~L~~N~l~~l~-------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~-~~L~~l~l~ 270 (317)
T 3o53_A 216 VTWISLRNNKLVLIE-------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQ 270 (317)
T ss_dssp CSEEECTTSCCCEEC-------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTC-HHHHHHHHH
T ss_pred ccEEECcCCcccchh-------hHhhcCCCCCEEEccCCCccCcCHHHHHhcc-ccceEEECC
Confidence 666666666665432 23455566666666666665 4444444442 455555555
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.3e-29 Score=258.39 Aligned_cols=350 Identities=13% Similarity=0.115 Sum_probs=218.5
Q ss_pred CcEEEEEcCCCCCc---cccccc------------ccCCCCCCEEeCCCCcCCCCCchhhcCC--CccCeEEccCCC-CC
Q 040495 74 QRVTRLDLRNQSIG---GPLSPY------------VGNLSFLRYINLANNGFLGEIPPQIGRL--NMLEGLVLSNNS-FS 135 (443)
Q Consensus 74 ~~v~~L~l~~~~~~---~~~~~~------------~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~l~~n~-~~ 135 (443)
.++++|+++++... +.+|.. ...+++|++|+|++|.+++..+..++.. ++|++|++++|. ++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 67999999775321 222222 2378999999999999887767777663 449999999986 22
Q ss_pred C-CCChhhhcCCCCceeeccCCccccc----CCccccCCcCccEeeeeccccCc----cCCccccCCCCCCEEEccCCcC
Q 040495 136 G-TIPTNLSRRSNLIELSVDTNYLVGE----IPSAIGSLFKLERLFIFHNHITG----QLPASIGNLSSLLAFDVRENIL 206 (443)
Q Consensus 136 ~-~~p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l 206 (443)
. .++.....+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1 1233345889999999999998755 33345678999999999999873 3444567899999999999988
Q ss_pred CcccccccCCCCCCEEEcccccCC---CCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCcc--
Q 040495 207 WGRIDSLVQLRNLRLLDIAFNHFS---GMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGS-- 281 (443)
Q Consensus 207 ~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-- 281 (443)
.+....+..+++|++|+++..... +..+..+..+++|+.++++++... .+|..+. .+++|++|++++|.+++.
T Consensus 233 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHH
T ss_pred HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHH
Confidence 776566777788888888743221 122233344444555544443221 2332222 344445555544443322
Q ss_pred -----------------------CCccCcCCCCCCEEeccc-----------CcCccccchh-hhCCCCCCEEEccCCCC
Q 040495 282 -----------------------IPVSLSNASRLEMIEFSR-----------NQFSGRVSVD-FSRLKNLSFLNMGINNL 326 (443)
Q Consensus 282 -----------------------~~~~l~~~~~L~~L~l~~-----------n~l~~~~~~~-~~~l~~L~~L~l~~n~l 326 (443)
++.....+++|++|++++ +.+++..... ...+++|++|+++.|.+
T Consensus 311 ~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence 222223445555555552 3343322211 23455666666655555
Q ss_pred cccCCCchhhHhhhc-CCCCCCEEEcc----CCcCccc-----CChhHhhhccCCCEEeccCCc--CeecCchhhh-cCC
Q 040495 327 GTRTANELDFINLLA-NCSKLERLYFN----RNRFQGV-----LPQSMANFSSTIKQIAMGRNR--ISGTIPPGIR-SHA 393 (443)
Q Consensus 327 ~~~~~~~~~~~~~~~-~~~~L~~L~l~----~n~l~~~-----~p~~~~~~~~~L~~L~L~~n~--l~~~~p~~l~-~~~ 393 (443)
++... ..+. .+++|+.|+++ .|.+++. ++..+.. +++|+.|++++|. +++..+..+. .++
T Consensus 391 ~~~~~------~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 391 TNESL------ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp CHHHH------HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred cHHHH------HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 44332 2233 36777777775 5566642 2222333 4678888886543 6665555554 478
Q ss_pred CCCeEeCcCCcCcc-cCchhhcCCCCCCEEEccCCcCccc
Q 040495 394 NLNWLTMDSNLFTG-TIPPVIGELKNLQLLDLGGNFLQGS 432 (443)
Q Consensus 394 ~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~ 432 (443)
+|++|++++|++++ .++..+..+++|++|++++|++++.
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 89999999998876 4556667889999999999998754
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.3e-27 Score=236.83 Aligned_cols=234 Identities=18% Similarity=0.234 Sum_probs=165.4
Q ss_pred CccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEccc
Q 040495 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSE 250 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 250 (443)
+|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC
Confidence 45555555555544444445555555555555555443333 455566666666666655321 226777777777
Q ss_pred CcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhh-CCCCCCEEEccCCCCccc
Q 040495 251 NRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS-RLKNLSFLNMGINNLGTR 329 (443)
Q Consensus 251 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 329 (443)
|.+++..+ . .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 109 N~l~~~~~-~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSC-S---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEE-C---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCc-c---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 77764332 2 457788888888888877777788888888888888888887777765 688888888888888877
Q ss_pred CCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc-cc
Q 040495 330 TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT-GT 408 (443)
Q Consensus 330 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~-~~ 408 (443)
.+ ...+++|++|++++|.+++ +|+.+..+ ++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.
T Consensus 185 ~~--------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l-~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 185 KG--------QVVFAKLKTLDLSSNKLAF-MGPEFQSA-AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EC--------CCCCTTCCEEECCSSCCCE-ECGGGGGG-TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred cc--------cccCCCCCEEECCCCCCCC-CCHhHcCC-CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 44 3457888899999998885 45556654 788999999998885 6777888888999999999887 77
Q ss_pred CchhhcCCCCCCEEEcc
Q 040495 409 IPPVIGELKNLQLLDLG 425 (443)
Q Consensus 409 ~p~~~~~l~~L~~L~l~ 425 (443)
+|..+..++.|+.++++
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 78888888888888875
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.4e-25 Score=205.25 Aligned_cols=215 Identities=19% Similarity=0.229 Sum_probs=143.5
Q ss_pred CCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCC
Q 040495 59 MSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTI 138 (443)
Q Consensus 59 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 138 (443)
.+.|.|.|+.|... ..++.++++++.++. +|..+. +++++|++++|.+++..+..+.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36899999998653 456789999998875 554443 67999999999998766678899999999999999998555
Q ss_pred ChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCC
Q 040495 139 PTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLR 217 (443)
Q Consensus 139 p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~ 217 (443)
+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.... ..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 556678889999999988888655566778888888888888887666656666666666666666555544 3344555
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcC
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNF 278 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 278 (443)
+|++|++++|.+.+..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence 5555555555554433334444444444444444444 23332222334444444444433
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-26 Score=227.67 Aligned_cols=235 Identities=17% Similarity=0.130 Sum_probs=141.4
Q ss_pred ccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc
Q 040495 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 202 (443)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| ++.+++|++|++++|.+++. | ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECc
Confidence 45555555555554444555555555555555555553333 55555555555555555522 1 22556666666
Q ss_pred CCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccC
Q 040495 203 ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSI 282 (443)
Q Consensus 203 ~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 282 (443)
+|.+.+.... .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+...+++|++|++++|.+++..
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 6655554421 24667777777777776666666777777777777777776566555445677777777777776542
Q ss_pred CccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc-ccCC
Q 040495 283 PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ-GVLP 361 (443)
Q Consensus 283 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p 361 (443)
+ ...+++|+.|++++|.+++..+. +..+++|+.|++++|.+++.+. .+..+++|+.|++++|++. +.+|
T Consensus 186 ~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-------~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 186 G--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-------ALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp C--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-------TCCCCTTCCEEECTTCCBCHHHHH
T ss_pred c--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-------hhccCCCCCEEEcCCCCCcCcchH
Confidence 2 33467777777777777764443 6677777777777777765332 3556677777777777766 4445
Q ss_pred hhHhhhccCCCEEecc
Q 040495 362 QSMANFSSTIKQIAMG 377 (443)
Q Consensus 362 ~~~~~~~~~L~~L~L~ 377 (443)
.++..+ +.++.++++
T Consensus 256 ~~~~~l-~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKN-QRVQTVAKQ 270 (487)
T ss_dssp HHHTTC-HHHHHHHHH
T ss_pred HHHHhC-CCCcEEecc
Confidence 544442 455555553
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.9e-28 Score=248.47 Aligned_cols=355 Identities=12% Similarity=0.146 Sum_probs=238.9
Q ss_pred CcEEEEEcCCCCCccccccccc-CCCCCCEEeCCCC-cCCCC-CchhhcCCCccCeEEccCCCCCCCCChhhh----cCC
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVG-NLSFLRYINLANN-GFLGE-IPPQIGRLNMLEGLVLSNNSFSGTIPTNLS----RRS 146 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~----~l~ 146 (443)
.++++|+++++.+.+..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4678888888877766555554 5788888888877 44432 444445788888888888877655544443 556
Q ss_pred CCceeeccCCc--ccc-cCCccccCCcCccEeeeecc-ccCccCCccccCCCCCCEEEccCCcC----------------
Q 040495 147 NLIELSVDTNY--LVG-EIPSAIGSLFKLERLFIFHN-HITGQLPASIGNLSSLLAFDVRENIL---------------- 206 (443)
Q Consensus 147 ~L~~L~l~~n~--l~~-~~p~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l---------------- 206 (443)
+|++|++++|. +.. .++..+..+++|++|++++| .+. .++..+..+++|++|++..+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 88888888775 221 11222344678888888877 333 3555666677777776544311
Q ss_pred ----------Ccc----c-ccccCCCCCCEEEcccccCCCCCC-ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcE
Q 040495 207 ----------WGR----I-DSLVQLRNLRLLDIAFNHFSGMIP-PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQ 270 (443)
Q Consensus 207 ----------~~~----~-~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 270 (443)
... . ..+..+++|++|++++|.+++... ..+..+++|++|++++| ++......+...+++|++
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 100 1 122246788888888888654322 22457788999998887 442322333435788999
Q ss_pred EeCC---------CCcCCccCCccCc-CCCCCCEEecccCcCccccchhhh-CCCCCCEEEcc--C----CCCcccCCCc
Q 040495 271 LSPN---------GNNFTGSIPVSLS-NASRLEMIEFSRNQFSGRVSVDFS-RLKNLSFLNMG--I----NNLGTRTANE 333 (443)
Q Consensus 271 L~L~---------~n~l~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~~~ 333 (443)
|++. .+.+++.....+. .+++|++|.+..+.+++.....+. .+++|+.|+++ + +.++.... +
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~-~ 421 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL-D 421 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT-H
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch-h
Confidence 9883 3455543333333 478999999888888877666665 58999999998 3 45543221 1
Q ss_pred hhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhh-hcCCCCCeEeCcCCcCcccCch-
Q 040495 334 LDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSHANLNWLTMDSNLFTGTIPP- 411 (443)
Q Consensus 334 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~L~~n~~~~~~p~- 411 (443)
..+...+..+++|++|++++ .+++..+..+....++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+.
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 22334477889999999987 77766666666656899999999999987766555 7789999999999999755544
Q ss_pred hhcCCCCCCEEEccCCcCccc
Q 040495 412 VIGELKNLQLLDLGGNFLQGS 432 (443)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~ 432 (443)
....+++|++|++++|+++..
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBHH
T ss_pred HHHhCCCCCEEeeeCCCCCHH
Confidence 445589999999999998643
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.9e-24 Score=198.47 Aligned_cols=207 Identities=21% Similarity=0.259 Sum_probs=96.7
Q ss_pred CCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecc
Q 040495 219 LRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
+++|++++|.+.+..+..+.++++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 444444444444333334444444444444444444 2222222244445555555554444444444455555555555
Q ss_pred cCcCccccchhhhCCCCCCEEEccCCCCcccC-CCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCC----E
Q 040495 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT-ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK----Q 373 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~----~ 373 (443)
+|++.+..+..+..+++|++|++++|.+++.. + ..+..+++|++|++++|++++..+..+..+ +.++ .
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~ 181 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP------EYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLS 181 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC------GGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEE
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCc------hhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhcccccee
Confidence 55554444434455555555555555554422 2 334455555555555555554333333332 3343 5
Q ss_pred EeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCC
Q 040495 374 IAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 374 L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
|++++|++++..+. .....+|++|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus 182 L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 182 LDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 55555555533222 2222355555555555553333344555555566665555555443
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=7.9e-25 Score=200.51 Aligned_cols=226 Identities=17% Similarity=0.237 Sum_probs=108.0
Q ss_pred CccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEccc
Q 040495 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSE 250 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 250 (443)
++..+++..+.+.+. .....+++|+.|++.+|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 344444444444422 2234555666666666554432 3344555555555555555431 2444555555555555
Q ss_pred CcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccC
Q 040495 251 NRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT 330 (443)
Q Consensus 251 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..
T Consensus 95 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 5554 233222224455555555555555444444444555555555555554444444444444444444444444433
Q ss_pred CCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 331 ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
+ ..+..++ +|+.|++++|++++..|..+..+++|++|++++|++.+.
T Consensus 174 ~------~~~~~l~-------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-- 220 (272)
T 3rfs_A 174 E------GVFDKLT-------------------------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-- 220 (272)
T ss_dssp T------TTTTTCT-------------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--
T ss_pred H------HHhcCCc-------------------------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--
Confidence 3 2234444 455555555555544444444555555555555544422
Q ss_pred hhhcCCCCCCEEEccCCcCcccCCccccCC
Q 040495 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 411 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
+++|+.++++.|.++|.+|.+++++
T Consensus 221 -----~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 221 -----CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp -----TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred -----CcHHHHHHHHHHhCCCcccCccccc
Confidence 2344555555555555555544433
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.9e-24 Score=196.42 Aligned_cols=206 Identities=20% Similarity=0.194 Sum_probs=111.7
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeee
Q 040495 98 SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 177 (443)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45777777777776555556677777777777777766555556666666666666666666555555566666666666
Q ss_pred eccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCC-CCccccCCCCCcEEEcccCcCccc
Q 040495 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGM-IPPPIFNISSLEVISLSENRFTGS 256 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~ 256 (443)
++|.+++..+..+. .+++|++|++++|.+.+. +|..+..+++|++|++++|.+++.
T Consensus 108 ~~n~l~~~~~~~~~-----------------------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 108 VETNLASLENFPIG-----------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTSCCCCSTTCCCT-----------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCchhcc-----------------------cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 66655543333333 344455555555554432 355555555566666666555532
Q ss_pred CChhhhcCCCCCc----EEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcc
Q 040495 257 LPVDAGVNLPNLR----QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328 (443)
Q Consensus 257 ~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
.+..+. .+++++ +|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 165 ~~~~~~-~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 165 YCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CGGGGH-HHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CHHHhh-hhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 222221 233333 555555555533332222 2345555555555554444444455555555555554444
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5.6e-27 Score=238.99 Aligned_cols=352 Identities=13% Similarity=0.086 Sum_probs=229.7
Q ss_pred CcEEEEEcCCCCCccc---c------------cccccCCCCCCEEeCCCCcCCCCCchhhc-CCCccCeEEccCC-CCCC
Q 040495 74 QRVTRLDLRNQSIGGP---L------------SPYVGNLSFLRYINLANNGFLGEIPPQIG-RLNMLEGLVLSNN-SFSG 136 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~---~------------~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n-~~~~ 136 (443)
.+++.|+++++..... . +.....+++|++|++++|.+++..+..+. .+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 4678888887653211 1 11234678999999999988877666675 6899999999988 4543
Q ss_pred C-CChhhhcCCCCceeeccCCcccccCCccc----cCCcCccEeeeeccc--cCcc-CCccccCCCCCCEEEccCC-cCC
Q 040495 137 T-IPTNLSRRSNLIELSVDTNYLVGEIPSAI----GSLFKLERLFIFHNH--ITGQ-LPASIGNLSSLLAFDVREN-ILW 207 (443)
Q Consensus 137 ~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~l----~~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n-~l~ 207 (443)
. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. ++.. ++.....+++|++|++++| .+.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 44445589999999999998775444433 367799999999886 2211 1122345799999999988 333
Q ss_pred cccccccCCCCCCEEEcccccC--------------------------CC----CCCccccCCCCCcEEEcccCcCcccC
Q 040495 208 GRIDSLVQLRNLRLLDIAFNHF--------------------------SG----MIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 208 ~~~~~l~~l~~L~~L~l~~n~~--------------------------~~----~~~~~l~~l~~L~~L~l~~n~l~~~~ 257 (443)
+....+..+++|++|+++.+.. .. .++..+..+++|++|++++|.+++..
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence 3225566778888888654421 11 11222224567777777777765443
Q ss_pred ChhhhcCCCCCcEEeCCCCcCCcc-CCccCcCCCCCCEEeccc---------CcCccccchhhh-CCCCCCEEEccCCCC
Q 040495 258 PVDAGVNLPNLRQLSPNGNNFTGS-IPVSLSNASRLEMIEFSR---------NQFSGRVSVDFS-RLKNLSFLNMGINNL 326 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~---------n~l~~~~~~~~~-~l~~L~~L~l~~n~l 326 (443)
...+...+++|++|++++| +++. ++.....+++|++|++.+ +.+++.....+. .+++|+.|++..|.+
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l 384 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence 3333446777777777766 3322 222233467777777733 345443333333 477788887777777
Q ss_pred cccCCCchhhHhhh-cCCCCCCEEEcc--C----CcCcccCCh-----hHhhhccCCCEEeccCCcCeecCchhhhc-CC
Q 040495 327 GTRTANELDFINLL-ANCSKLERLYFN--R----NRFQGVLPQ-----SMANFSSTIKQIAMGRNRISGTIPPGIRS-HA 393 (443)
Q Consensus 327 ~~~~~~~~~~~~~~-~~~~~L~~L~l~--~----n~l~~~~p~-----~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-~~ 393 (443)
++... ..+ ..+++|++|+++ + +.+++ .|. .+...+++|+.|++++ .+++..+..+.. ++
T Consensus 385 ~~~~~------~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 385 TNAAL------ITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp CHHHH------HHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred CHHHH------HHHHhhCCCcceeEeecccCCCcccccC-CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 65433 223 357889999998 4 55552 221 1122357899999977 677666666665 88
Q ss_pred CCCeEeCcCCcCcccCchhh-cCCCCCCEEEccCCcCcccCC
Q 040495 394 NLNWLTMDSNLFTGTIPPVI-GELKNLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p 434 (443)
+|++|++++|.+++..+..+ ..+++|++|++++|.+++..+
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 99999999999986666555 668999999999999975443
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=6.6e-26 Score=216.54 Aligned_cols=268 Identities=14% Similarity=0.165 Sum_probs=156.6
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCc----hhhcCCC-ccCeEEccCCCCCCCCChhhhcC-----CCC
Q 040495 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIP----PQIGRLN-MLEGLVLSNNSFSGTIPTNLSRR-----SNL 148 (443)
Q Consensus 79 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~p~~l~~l-----~~L 148 (443)
.+++.+.++|.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677778887777766666668888888888876655 6677777 78888888888877666666654 778
Q ss_pred ceeeccCCcccccCCcc----ccCC-cCccEeeeeccccCccCCcccc----C-CCCCCEEEccCCcCCccc-ccccCCC
Q 040495 149 IELSVDTNYLVGEIPSA----IGSL-FKLERLFIFHNHITGQLPASIG----N-LSSLLAFDVRENILWGRI-DSLVQLR 217 (443)
Q Consensus 149 ~~L~l~~n~l~~~~p~~----l~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~L~l~~n~l~~~~-~~l~~l~ 217 (443)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+.... ..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----- 157 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE----- 157 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-----
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-----
Confidence 88888888777554443 3333 6777777777777654443332 2 235555555555444221 11
Q ss_pred CCCEEEcccccCCCCCCccccCCC-CCcEEEcccCcCcccCChhhh---cCC-CCCcEEeCCCCcCCcc----CCccCcC
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNIS-SLEVISLSENRFTGSLPVDAG---VNL-PNLRQLSPNGNNFTGS----IPVSLSN 288 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~---~~~-~~L~~L~L~~n~l~~~----~~~~l~~ 288 (443)
++..+...+ +|++|++++|.+++..+..+. ... ++|++|++++|.+++. ++..+..
T Consensus 158 ---------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 158 ---------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp ---------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ---------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 111122222 555555555555433332211 123 3666666666665532 3333333
Q ss_pred -CCCCCEEecccCcCccccch----hhhCCCCCCEEEccCCCCcccCCCch-hhHhhhcCCCCCCEEEccCCcCcccCCh
Q 040495 289 -ASRLEMIEFSRNQFSGRVSV----DFSRLKNLSFLNMGINNLGTRTANEL-DFINLLANCSKLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 289 -~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (443)
.++|++|++++|.+++..+. .+..+++|+.|++++|.+....+... .....+..+++|++|++++|++.+..+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 34677777777766654432 23455667777777766544433211 1223466777788888888888766555
Q ss_pred hHhh
Q 040495 363 SMAN 366 (443)
Q Consensus 363 ~~~~ 366 (443)
.+..
T Consensus 303 ~~~~ 306 (362)
T 3goz_A 303 PISN 306 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2e-24 Score=197.85 Aligned_cols=229 Identities=19% Similarity=0.232 Sum_probs=193.8
Q ss_pred CCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcc
Q 040495 146 SNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIA 225 (443)
Q Consensus 146 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 225 (443)
.++..+++..+.+... .....+++|+.|++++|.++. + ..+..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECT
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECC
Confidence 3455666766666533 335678899999999999873 3 3588999999999999998874 578899999999999
Q ss_pred cccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccc
Q 040495 226 FNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 226 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
+|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 99999877778899999999999999998 55555444899999999999999977777789999999999999999988
Q ss_pred cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecC
Q 040495 306 VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 306 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~ 385 (443)
.+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+. ++.++.++++.|.++|.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHTGGGB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCH------HHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhCCCcc
Confidence 88888999999999999999998877 5678899999999999988754 246788888889999999
Q ss_pred chhhhcCCC
Q 040495 386 PPGIRSHAN 394 (443)
Q Consensus 386 p~~l~~~~~ 394 (443)
|.+++.+..
T Consensus 239 p~~~~~~~~ 247 (272)
T 3rfs_A 239 RNSAGSVAP 247 (272)
T ss_dssp BCTTSCBCG
T ss_pred cCcccccCC
Confidence 888776554
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.6e-25 Score=213.89 Aligned_cols=258 Identities=13% Similarity=0.168 Sum_probs=171.0
Q ss_pred eeeccCCcccccCCccccCCcCccEeeeeccccCccCC----ccccCCC-CCCEEEccCCcCCccc-ccccCC-----CC
Q 040495 150 ELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP----ASIGNLS-SLLAFDVRENILWGRI-DSLVQL-----RN 218 (443)
Q Consensus 150 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~-~~l~~l-----~~ 218 (443)
+++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.... ..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888888777777779999999999886665 5677777 8888888888887654 444443 78
Q ss_pred CCEEEcccccCCCCCCcccc----CC-CCCcEEEcccCcCcccCChhhh---cC-CCCCcEEeCCCCcCCccC----Ccc
Q 040495 219 LRLLDIAFNHFSGMIPPPIF----NI-SSLEVISLSENRFTGSLPVDAG---VN-LPNLRQLSPNGNNFTGSI----PVS 285 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~~~~~~---~~-~~~L~~L~L~~n~l~~~~----~~~ 285 (443)
|++|++++|.+++..+..+. .. ++|++|++++|.+++..+..+. .. ..+|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 88888888888766555333 33 7888888888888744433322 12 357888888888777433 333
Q ss_pred CcCCC-CCCEEecccCcCccccchhh----hCC-CCCCEEEccCCCCcccCCCchhhHhhhcC-CCCCCEEEccCCcCcc
Q 040495 286 LSNAS-RLEMIEFSRNQFSGRVSVDF----SRL-KNLSFLNMGINNLGTRTANELDFINLLAN-CSKLERLYFNRNRFQG 358 (443)
Q Consensus 286 l~~~~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~ 358 (443)
+...+ +|++|++++|++++..+..+ ..+ ++|+.|++++|.+++..... +...+.. .++|++|++++|++++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE--LAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH--HHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH--HHHHHhcCCCCceEEECcCCCCCc
Confidence 34444 78888888888776665433 344 47888888888777643311 1233444 3578888888887775
Q ss_pred cCChhHhh---hccCCCEEeccCCcCeec-------CchhhhcCCCCCeEeCcCCcCcccC
Q 040495 359 VLPQSMAN---FSSTIKQIAMGRNRISGT-------IPPGIRSHANLNWLTMDSNLFTGTI 409 (443)
Q Consensus 359 ~~p~~~~~---~~~~L~~L~L~~n~l~~~-------~p~~l~~~~~L~~L~L~~n~~~~~~ 409 (443)
..+..+.. ..++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+..
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 54433222 236677788877774432 2234456667777777777776553
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8.2e-23 Score=186.91 Aligned_cols=202 Identities=21% Similarity=0.251 Sum_probs=92.2
Q ss_pred CCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeec
Q 040495 100 LRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFH 179 (443)
Q Consensus 100 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 179 (443)
.++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555555554 3343222 3445555555555433333444444444444444444422222233344444444444
Q ss_pred cccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCCh
Q 040495 180 NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 180 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 259 (443)
|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|.
T Consensus 95 n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~ 150 (270)
T 2o6q_A 95 NKLQALPI-----------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150 (270)
T ss_dssp SCCCCCCT-----------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CcCCcCCH-----------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCH
Confidence 44332222 22334444555555555554444444455555555555555554 3333
Q ss_pred hhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcc
Q 040495 260 DAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328 (443)
Q Consensus 260 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 333344555555555555554333444455555555555555554433344444555555555544433
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=3e-25 Score=214.00 Aligned_cols=249 Identities=18% Similarity=0.250 Sum_probs=131.8
Q ss_pred cCCccccCCcCccEeeeeccccCccCCc----cccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCcc
Q 040495 161 EIPSAIGSLFKLERLFIFHNHITGQLPA----SIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPP 236 (443)
Q Consensus 161 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
.++..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+. .+.+.+|..
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~--------------------~l~~~~~~~ 82 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG--------------------RVKDEIPEA 82 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT--------------------SCGGGSHHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC--------------------ccccchhHH
Confidence 3455555666666666666666544322 2445555555555554322 111222222
Q ss_pred c-------cCCCCCcEEEcccCcCcc----cCChhhhcCCCCCcEEeCCCCcCCccCCcc----CcCC---------CCC
Q 040495 237 I-------FNISSLEVISLSENRFTG----SLPVDAGVNLPNLRQLSPNGNNFTGSIPVS----LSNA---------SRL 292 (443)
Q Consensus 237 l-------~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----l~~~---------~~L 292 (443)
+ ..+++|++|++++|.+++ .+|..+. .+++|++|++++|.+++..+.. +..+ ++|
T Consensus 83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence 2 344555555555555543 1333333 4555555555555554322222 2222 566
Q ss_pred CEEecccCcCc-cccc---hhhhCCCCCCEEEccCCCCcccCCCchhhHh-hhcCCCCCCEEEccCCcCc----ccCChh
Q 040495 293 EMIEFSRNQFS-GRVS---VDFSRLKNLSFLNMGINNLGTRTANELDFIN-LLANCSKLERLYFNRNRFQ----GVLPQS 363 (443)
Q Consensus 293 ~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~----~~~p~~ 363 (443)
++|++++|+++ +..+ ..+..+++|+.|++++|.++..... .... .+..+++|++|++++|.++ +.+|..
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~--~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE--HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH--HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHH--HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 66666666665 2222 2345566666666666665522100 0011 4556666666666666664 345555
Q ss_pred HhhhccCCCEEeccCCcCeec----Cchhhhc--CCCCCeEeCcCCcCcc----cCchhh-cCCCCCCEEEccCCcCccc
Q 040495 364 MANFSSTIKQIAMGRNRISGT----IPPGIRS--HANLNWLTMDSNLFTG----TIPPVI-GELKNLQLLDLGGNFLQGS 432 (443)
Q Consensus 364 ~~~~~~~L~~L~L~~n~l~~~----~p~~l~~--~~~L~~L~L~~n~~~~----~~p~~~-~~l~~L~~L~l~~n~l~~~ 432 (443)
+... ++|+.|+|++|++++. ++..+.. +++|++|+|++|.+++ .+|..+ .++++|++|++++|++++.
T Consensus 240 l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 240 LKSW-PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp GGGC-TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HccC-CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 5443 5677777777766654 4455533 6667777777777765 366655 4467777777777777655
Q ss_pred C
Q 040495 433 I 433 (443)
Q Consensus 433 ~ 433 (443)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=201.18 Aligned_cols=207 Identities=18% Similarity=0.214 Sum_probs=165.2
Q ss_pred CCCCCEEEcccccCCCCCCccc--cCCCCCcEEEcccCcCcccCC----hhhhcCCCCCcEEeCCCCcCCccCCccCcCC
Q 040495 216 LRNLRLLDIAFNHFSGMIPPPI--FNISSLEVISLSENRFTGSLP----VDAGVNLPNLRQLSPNGNNFTGSIPVSLSNA 289 (443)
Q Consensus 216 l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 289 (443)
.++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+. .+++|++|++++|++++..+..+..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccC
Confidence 4668888888888888888777 788889999999998886555 2223 68899999999999987778888999
Q ss_pred CCCCEEecccCcCccc--c--chhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHh
Q 040495 290 SRLEMIEFSRNQFSGR--V--SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMA 365 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 365 (443)
++|++|++++|++.+. . +..+..+++|++|++++|.++..... ....+..+++|++|++++|++++.+|..+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV---CAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH---HHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH---HHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 9999999999988753 2 12246889999999999988643220 001357889999999999999987787766
Q ss_pred hhc--cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 366 NFS--STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 366 ~~~--~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
.+. ++|+.|++++|+++ .+|..+. ++|++|+|++|++++ +|. +..+++|++|++++|+++.
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 642 68999999999999 7787764 799999999999994 454 6778999999999999874
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=6.1e-25 Score=207.72 Aligned_cols=254 Identities=17% Similarity=0.212 Sum_probs=135.2
Q ss_pred CceeeccCCcccccCCccccCC--cCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcc
Q 040495 148 LIELSVDTNYLVGEIPSAIGSL--FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIA 225 (443)
Q Consensus 148 L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 225 (443)
++.++++++.+. +..+..+ ++++.+++++|.+++..+. +..+++ |++|+++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~-----------------------L~~L~L~ 101 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFR-----------------------VQHMDLS 101 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBC-----------------------CCEEECT
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCC-----------------------CCEEEcc
Confidence 556666665544 2333333 5566666666655544332 334444 4445554
Q ss_pred cccCCCC-CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCC-cCCcc-CCccCcCCCCCCEEecccC-c
Q 040495 226 FNHFSGM-IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN-NFTGS-IPVSLSNASRLEMIEFSRN-Q 301 (443)
Q Consensus 226 ~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~l~~~~~L~~L~l~~n-~ 301 (443)
+|.+.+. ++..+..+++|++|++++|.+++..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++| .
T Consensus 102 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp TCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 4444432 334444555555555555555544444443 4555666666655 44432 4444555666666666666 5
Q ss_pred Cccc-cchhhhCCC-CCCEEEccCC--CCcccCCCchhhHhhhcCCCCCCEEEccCCc-CcccCChhHhhhccCCCEEec
Q 040495 302 FSGR-VSVDFSRLK-NLSFLNMGIN--NLGTRTANELDFINLLANCSKLERLYFNRNR-FQGVLPQSMANFSSTIKQIAM 376 (443)
Q Consensus 302 l~~~-~~~~~~~l~-~L~~L~l~~n--~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~L 376 (443)
+++. ++..+..++ +|++|++++| .+++. .++..+..+++|++|++++|. +++..+..+..+ ++|+.|++
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l-~~L~~L~l 254 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-----DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSL 254 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-----HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC-TTCCEEEC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHH-----HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC-CCCCEeeC
Confidence 5543 344455666 6666666666 33311 111345566667777777666 555555555553 66777777
Q ss_pred cCCc-CeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCcccc
Q 040495 377 GRNR-ISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLG 438 (443)
Q Consensus 377 ~~n~-l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 438 (443)
++|. ++......+..+++|++|++++| ++...-..+. ..++.|++++|++++..|..++
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 7663 33222234666777777777776 4322222221 2355555677777777776554
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.1e-25 Score=212.77 Aligned_cols=268 Identities=16% Similarity=0.150 Sum_probs=174.3
Q ss_pred CCCccceeeCCCCCcEEEEEcCCCCCcccccccccCC--CCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCC-
Q 040495 61 LCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNL--SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGT- 137 (443)
Q Consensus 61 ~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~- 137 (443)
|..|.++.++. ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +.++++|++|++++|.+++.
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 44688888764 35778899888775 3445666 7889999998888866554 56788888888888887755
Q ss_pred CChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeecc-ccCcc-CCccccCCCCCCEEEccCC-cCCccccccc
Q 040495 138 IPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHN-HITGQ-LPASIGNLSSLLAFDVREN-ILWGRIDSLV 214 (443)
Q Consensus 138 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~~l~ 214 (443)
+|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~---- 185 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH---- 185 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH----
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH----
Confidence 6777777888888888888777666777777777777777777 45532 3444555555666655555 444321
Q ss_pred CCCCCCEEEcccccCCCCCCccccCCC-CCcEEEcccC--cCc-ccCChhhhcCCCCCcEEeCCCCc-CCccCCccCcCC
Q 040495 215 QLRNLRLLDIAFNHFSGMIPPPIFNIS-SLEVISLSEN--RFT-GSLPVDAGVNLPNLRQLSPNGNN-FTGSIPVSLSNA 289 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~ 289 (443)
++..+..++ +|++|++++| .++ +.++..+. .+++|++|++++|. +++..+..+..+
T Consensus 186 ------------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 186 ------------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp ------------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred ------------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 223334444 5555555555 333 23444333 57777777777777 565666677777
Q ss_pred CCCCEEecccCc-CccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhh
Q 040495 290 SRLEMIEFSRNQ-FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN 366 (443)
Q Consensus 290 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (443)
++|++|++++|. +.......+..+++|+.|++++| ++.... ..+. .+++.|++++|++++..|..+..
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~------~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL------QLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCH------HHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHH------HHHH--hhCcceEEecccCccccCCcccc
Confidence 888888888774 33332335677888888888877 332211 1121 23556668888888877776543
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=8e-23 Score=188.70 Aligned_cols=201 Identities=25% Similarity=0.256 Sum_probs=104.2
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCcc
Q 040495 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 173 (443)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..|..+..+++|++|++++|.+++. +.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 455666677777666665 4454433 4666677777766655566666666677777766666532 222 5566666
Q ss_pred EeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCc
Q 040495 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENR 252 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 252 (443)
+|++++|.++ .+|..+..+++|++|++++|.+++.. ..+..+++|++|++++|++.+..+..+..+++|++|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666665 44554555555555555555444433 334444444445554444443333334444444444444444
Q ss_pred CcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcC
Q 040495 253 FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302 (443)
Q Consensus 253 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 302 (443)
++ .+|...+..+++|++|++++|+++ .+|..+...++|+.+++++|.+
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 44 333333333444444444444444 3333333334444444444443
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.5e-25 Score=216.01 Aligned_cols=119 Identities=16% Similarity=0.197 Sum_probs=57.5
Q ss_pred CCCCcEEeCCCCcCCc-----cCCccCcCCCCCCEEecccCcCc----cccchhhhCCCCCCEEEccCCCCcccCCCchh
Q 040495 265 LPNLRQLSPNGNNFTG-----SIPVSLSNASRLEMIEFSRNQFS----GRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~-----~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
+++|++|++++|+++. ..+..+..+++|++|++++|.++ +.++..+..+++|+.|++++|.+++.... .
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--~ 263 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA--A 263 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH--H
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH--H
Confidence 4445555555554441 12224445555555555555554 33444455555555555555555443211 0
Q ss_pred hHhhh--cCCCCCCEEEccCCcCcc----cCChhHhhhccCCCEEeccCCcCeecC
Q 040495 336 FINLL--ANCSKLERLYFNRNRFQG----VLPQSMANFSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 336 ~~~~~--~~~~~L~~L~l~~n~l~~----~~p~~~~~~~~~L~~L~L~~n~l~~~~ 385 (443)
++..+ ..+++|++|++++|.+++ .+|..+...+++|+.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 11233 225556666666666554 245444222355666666666665544
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.4e-22 Score=187.13 Aligned_cols=203 Identities=19% Similarity=0.222 Sum_probs=122.7
Q ss_pred hcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCC
Q 040495 118 IGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLL 197 (443)
Q Consensus 118 l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 197 (443)
+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++. +.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 566777888888888877 5565543 5778888888887766667777777788888877777643 222 5566666
Q ss_pred EEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCc
Q 040495 198 AFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 198 ~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 277 (443)
+|++++|.+...+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCc
Confidence 666666666554455555666666666666665544455555666666666666555 3444443345555555555555
Q ss_pred CCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCc
Q 040495 278 FTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327 (443)
Q Consensus 278 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
+++..+..+..+++|+.|++++|+++ .+|..+...++|+.+++++|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 55333334455555555555555555 33444444445555555555444
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=8.3e-23 Score=184.76 Aligned_cols=191 Identities=19% Similarity=0.231 Sum_probs=148.5
Q ss_pred CCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCC
Q 040495 60 SLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP 139 (443)
Q Consensus 60 ~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 139 (443)
+||.|.|..|.. ..+.++++++.+.. +|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 577899999963 34578999998874 454443 689999999999998888889999999999999999998888
Q ss_pred hhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCC
Q 040495 140 TNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRN 218 (443)
Q Consensus 140 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~ 218 (443)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.. ..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88899999999999999998666677888899999999999888665555677777777777777776655 35666677
Q ss_pred CCEEEcccccCCCCCCccccCCCCCcEEEcccCcCccc
Q 040495 219 LRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGS 256 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 256 (443)
|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777777777655555666666666666666666543
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=194.20 Aligned_cols=225 Identities=14% Similarity=0.124 Sum_probs=169.3
Q ss_pred CCCCEEeCCCCcCCCCCch---hhcCCCccCeEEccCCCCCCCCChhh--hcCCCCceeeccCCcccccCC----ccccC
Q 040495 98 SFLRYINLANNGFLGEIPP---QIGRLNMLEGLVLSNNSFSGTIPTNL--SRRSNLIELSVDTNYLVGEIP----SAIGS 168 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~l~~n~~~~~~p~~l--~~l~~L~~L~l~~n~l~~~~p----~~l~~ 168 (443)
..++.+.+.++.++..... .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467777777766532111 12234668888888888888888877 788888888888888876544 33456
Q ss_pred CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcc---c--ccccCCCCCCEEEcccccCCCCCCc----cccC
Q 040495 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR---I--DSLVQLRNLRLLDIAFNHFSGMIPP----PIFN 239 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~--~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~ 239 (443)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+. . ..+..+++|++|++++|.++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 78889999999888877777888888999999988887652 1 223678889999999988862 222 2457
Q ss_pred CCCCcEEEcccCcCcccCChhhhcCC---CCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCC
Q 040495 240 ISSLEVISLSENRFTGSLPVDAGVNL---PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316 (443)
Q Consensus 240 l~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 316 (443)
+++|++|++++|.+++..|..+. .+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 78899999999998876676555 34 68999999999998 6677664 7899999999999864 33 6788999
Q ss_pred CEEEccCCCCccc
Q 040495 317 SFLNMGINNLGTR 329 (443)
Q Consensus 317 ~~L~l~~n~l~~~ 329 (443)
+.|++++|.+++.
T Consensus 297 ~~L~L~~N~l~~~ 309 (310)
T 4glp_A 297 DNLTLDGNPFLVP 309 (310)
T ss_dssp SCEECSSTTTSCC
T ss_pred cEEECcCCCCCCC
Confidence 9999999988753
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7.8e-22 Score=178.37 Aligned_cols=180 Identities=17% Similarity=0.226 Sum_probs=119.4
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEec
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
..++++++++.+. .+|..+. +++++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4566777777766 4454443 4677777777777643333333 6777777777777777666666777777777777
Q ss_pred ccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEecc
Q 040495 298 SRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMG 377 (443)
Q Consensus 298 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~ 377 (443)
++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+.. .++|+.|+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS------GVFDRLTKLKELRLNTNQLQSIPAGAFDK-LTNLQTLSLS 163 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcCh------hHhccCCcccEEECcCCcCCccCHHHcCc-CcCCCEEECC
Confidence 7777776666666777777777777777776555 44566777777777777777433334444 3667777777
Q ss_pred CCcCeecCchhhhcCCCCCeEeCcCCcCccc
Q 040495 378 RNRISGTIPPGIRSHANLNWLTMDSNLFTGT 408 (443)
Q Consensus 378 ~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~ 408 (443)
+|++++..+..+..+++|++|++++|++.+.
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777755555666677777777777777654
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2e-22 Score=180.90 Aligned_cols=197 Identities=14% Similarity=0.174 Sum_probs=140.4
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCc-CcccCChhhhcCCCCCcEEeCCC-CcCCccCCccCcCCCCCCEE
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENR-FTGSLPVDAGVNLPNLRQLSPNG-NNFTGSIPVSLSNASRLEMI 295 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L 295 (443)
++++|++++|.+++..+..+..+++|++|++++|. ++ .++...+..+++|++|++++ |++++..+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 55666666666655444456666666666666665 54 45544444667777777776 67765555667777777777
Q ss_pred ecccCcCccccchhhhCCCCCC---EEEccCC-CCcccCCCchhhHhhhcCCCCCC-EEEccCCcCcccCChhHhhhccC
Q 040495 296 EFSRNQFSGRVSVDFSRLKNLS---FLNMGIN-NLGTRTANELDFINLLANCSKLE-RLYFNRNRFQGVLPQSMANFSST 370 (443)
Q Consensus 296 ~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~p~~~~~~~~~ 370 (443)
++++|++++ +|. +..+++|+ +|++++| .+++..+ ..+.++++|+ +|++++|+++ .+|...+.. ++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~------~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~ 180 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV------NAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TK 180 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT------TTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc------ccccchhcceeEEEcCCCCCc-ccCHhhcCC-CC
Confidence 777777775 444 66777777 8888888 7777665 4577788888 8888888888 677665554 67
Q ss_pred CCEEeccCCc-CeecCchhhhcC-CCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCc
Q 040495 371 IKQIAMGRNR-ISGTIPPGIRSH-ANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 371 L~~L~L~~n~-l~~~~p~~l~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
|+.|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 8899999985 886656677888 88999999999888 56654 57788899888763
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=5.1e-22 Score=178.22 Aligned_cols=199 Identities=17% Similarity=0.114 Sum_probs=123.3
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCC-CCCCCChhhhcCCCCceeeccC-CcccccCCccccCCcCccEee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS-FSGTIPTNLSRRSNLIELSVDT-NYLVGEIPSAIGSLFKLERLF 176 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~ 176 (443)
++++|++++|.+++..+..++++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888876666677788888888888886 6655555677777777777777 777755555667777777777
Q ss_pred eeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccc-cCCCCCCccccCCCCCc-EEEcccCcCc
Q 040495 177 IFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFN-HFSGMIPPPIFNISSLE-VISLSENRFT 254 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~ 254 (443)
+++|.+++ +|. +..+++|+ .|++|++++| .+.+..+..+..+++|+ +|++++|.++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCCcc-ccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 77777764 443 44433333 1125555555 55444444455666666 6666666665
Q ss_pred ccCChhhhcCCCCCcEEeCCCCc-CCccCCccCcCC-CCCCEEecccCcCccccchhhhCCCCCCEEEccCC
Q 040495 255 GSLPVDAGVNLPNLRQLSPNGNN-FTGSIPVSLSNA-SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324 (443)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 324 (443)
.+|...+. .++|++|++++|+ +++..+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 170 -~i~~~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 -SVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp -EECTTTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred -ccCHhhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 55555542 2566666666663 654444555666 6666666666666533222 4455555555543
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.8e-21 Score=181.30 Aligned_cols=209 Identities=20% Similarity=0.323 Sum_probs=151.6
Q ss_pred EeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcC
Q 040495 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 253 (443)
.+.+..+.+++.. ....+++|++|++++|.+... +.+..+++|++|++++|.+.+.. . +..+++|++|++++|.+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcC
Confidence 3344444444322 345677888888888877654 35777888888888888887543 3 78888888888888888
Q ss_pred cccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCc
Q 040495 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANE 333 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 333 (443)
+ .++ .+. .+++|++|++++|++++ ++. +..+++|++|++++|++++..+ +..+++|+.|++++|.+++..+
T Consensus 98 ~-~~~-~~~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 98 K-NVS-AIA-GLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp S-CCG-GGT-TCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred C-Cch-hhc-CCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--
Confidence 7 444 333 67888888888888875 333 7788888888888888876544 7788888888888888776432
Q ss_pred hhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcc
Q 040495 334 LDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG 407 (443)
Q Consensus 334 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~ 407 (443)
+..+++|++|++++|++++ ++. +.. .++|+.|++++|++++.. .+..+++|+.|++++|++++
T Consensus 169 ------l~~l~~L~~L~l~~n~l~~-~~~-l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 ------LANLSKLTTLKADDNKISD-ISP-LAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ------GTTCTTCCEEECCSSCCCC-CGG-GGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ------hcCCCCCCEEECCCCccCc-Chh-hcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 6778888888888888874 333 444 477888888888888543 37778888888888888873
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.8e-21 Score=180.04 Aligned_cols=82 Identities=26% Similarity=0.336 Sum_probs=40.8
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
.+++|++|++++|.++ .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence 4555555555555554 233 355555555555555555522 22 5555555555555555442 22 34444445555
Q ss_pred eeeccccC
Q 040495 176 FIFHNHIT 183 (443)
Q Consensus 176 ~l~~n~l~ 183 (443)
++++|.++
T Consensus 113 ~l~~n~l~ 120 (308)
T 1h6u_A 113 DLTSTQIT 120 (308)
T ss_dssp ECTTSCCC
T ss_pred ECCCCCCC
Confidence 55444444
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.7e-21 Score=169.60 Aligned_cols=195 Identities=19% Similarity=0.220 Sum_probs=112.7
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.+. .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 44555555554 233322 346677777777666 44444444566677777777766654444556666677777776
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCC
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n 379 (443)
|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+.. .++|+.|++++|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N 158 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPD------GVFDKLTQLKDLRLYQNQLKSVPDGVFDR-LTSLQYIWLHDN 158 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCH------hHhccCCcCCEEECCCCccceeCHHHhcc-CCCccEEEecCC
Confidence 66665555556666666666666666665554 34556666666666666666333322333 356666666666
Q ss_pred cCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCcc
Q 040495 380 RISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 380 ~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
++.+. +++|++|+++.|.++|.+|+.++.++. ++..|...|..+..
T Consensus 159 ~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 159 PWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp CBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred CeecC-------CCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence 55532 345666666666666666666655443 44444444444433
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=3.8e-21 Score=192.24 Aligned_cols=187 Identities=24% Similarity=0.285 Sum_probs=141.7
Q ss_pred CCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCC
Q 040495 195 SLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPN 274 (443)
Q Consensus 195 ~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 274 (443)
+++.|++++|.+++.+..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +. . +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEECC
Confidence 7888888888888755444 377888888888887 566 456788888888888884 776 33 2 88888888
Q ss_pred CCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCC
Q 040495 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354 (443)
Q Consensus 275 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 354 (443)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|.+++... +. ++|++|++++|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--------l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--------LP--ESLEALDVSTN 190 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--------CC--TTCCEEECCSS
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--------hh--CCCCEEECcCC
Confidence 888885 555 57888888888888886 444 56788888888888877332 22 78888888888
Q ss_pred cCcccCChhHhhhccCC-------CEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCC
Q 040495 355 RFQGVLPQSMANFSSTI-------KQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL 416 (443)
Q Consensus 355 ~l~~~~p~~~~~~~~~L-------~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l 416 (443)
+++ .+|. +. .+| +.|+|++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 191 ~L~-~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 191 LLE-SLPA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCC-chhh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 888 6776 32 256 88888888888 678878778888888888888888888776654
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=2.6e-21 Score=193.52 Aligned_cols=211 Identities=23% Similarity=0.264 Sum_probs=133.0
Q ss_pred CCCCCCCCC-----Cccce-eeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeE
Q 040495 54 SWNNSMSLC-----QWTGV-TCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGL 127 (443)
Q Consensus 54 ~w~~~~~~c-----~w~gv-~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 127 (443)
+|.....+| .|.++ .|.. .+++.|+++++.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 455455667 68888 6754 478999999999887 66655 378999999999988 677 457889999
Q ss_pred EccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCC
Q 040495 128 VLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 128 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 207 (443)
++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 999998885 666 554 88888888888875 665 56788888888888874 554 4556666666666655
Q ss_pred cccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCc
Q 040495 208 GRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLS 287 (443)
Q Consensus 208 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 287 (443)
+.+. +. ++|+.|++++|.++ .+|. +.. +| ....+.|+.|++++|+++ .+|..+.
T Consensus 174 ~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~ 227 (571)
T 3cvr_A 174 FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN------------------HHSEETEIFFRCRENRIT-HIPENIL 227 (571)
T ss_dssp CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------------------------CCEEEECCSSCCC-CCCGGGG
T ss_pred Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hh------------------hcccccceEEecCCCcce-ecCHHHh
Confidence 5333 32 55555555555555 3333 322 33 000111155555555554 3444444
Q ss_pred CCCCCCEEecccCcCccccchhhh
Q 040495 288 NASRLEMIEFSRNQFSGRVSVDFS 311 (443)
Q Consensus 288 ~~~~L~~L~l~~n~l~~~~~~~~~ 311 (443)
.+++|+.|++++|.+++..|..+.
T Consensus 228 ~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp GSCTTEEEECCSSSCCHHHHHHHH
T ss_pred cCCCCCEEEeeCCcCCCcCHHHHH
Confidence 455555555555555555554443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=4e-21 Score=168.51 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=133.8
Q ss_pred CCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCC
Q 040495 60 SLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP 139 (443)
Q Consensus 60 ~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 139 (443)
..|.|.++.|... .+.. +|.. -.++|++|++++|.+++..+..+.++++|++|++++|.+++..+
T Consensus 5 C~C~~~~v~c~~~------------~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYSQ------------GRTS-VPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCSS------------CCSS-CCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecCC------------CccC-CCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 3478888888642 1211 2322 23578888888888876666667788888888888888886555
Q ss_pred hhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCC
Q 040495 140 TNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRN 218 (443)
Q Consensus 140 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~ 218 (443)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.. ..+..+++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 66778888888888888887555555778888888888888888666666778888888888888887766 45677888
Q ss_pred CCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhh
Q 040495 219 LRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG 262 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 262 (443)
|++|++++|.+.+ .+++|+.|+++.|.++|.+|..+.
T Consensus 150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 8888888887653 345788888888888888887665
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.6e-20 Score=176.89 Aligned_cols=228 Identities=18% Similarity=0.115 Sum_probs=157.4
Q ss_pred ccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCC-hhhhcCCCCce-eeccCCcccccCCcccc
Q 040495 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP-TNLSRRSNLIE-LSVDTNYLVGEIPSAIG 167 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~-L~l~~n~l~~~~p~~l~ 167 (443)
+|..+ .+++++|+|++|.++...+.+|+++++|++|++++|.+.+.+| ..|.+++++++ +.+.+|+++...|..|.
T Consensus 24 iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 24 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 45444 3679999999999985555678999999999999999876665 45678888775 55667888877778889
Q ss_pred CCcCccEeeeeccccCccCCccccCCCCCCEEEccCC-cCCccc-ccccCC-CCCCEEEcccccCCCCCCccccCCCCCc
Q 040495 168 SLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRI-DSLVQL-RNLRLLDIAFNHFSGMIPPPIFNISSLE 244 (443)
Q Consensus 168 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~-~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 244 (443)
.+++|++|++++|.+....+..+....++..+++.++ .+.... ..+..+ ..++.|++++|.++ .++.......+|+
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLD 180 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchh
Confidence 9999999999999998665555666677778887653 454444 344444 35777888888776 3454555556777
Q ss_pred EEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCC
Q 040495 245 VISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324 (443)
Q Consensus 245 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 324 (443)
++++.+++..+.+|...+..+++|++|++++|+++ .+|.. .+.+|+.|...++.--..+|. +..+++|+.+++.++
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 77777544334777766667777888888888777 33432 244555665555433334443 666777777777543
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.9e-20 Score=177.75 Aligned_cols=239 Identities=17% Similarity=0.106 Sum_probs=170.7
Q ss_pred CEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCc-cccCCcCccE-eeee
Q 040495 101 RYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPS-AIGSLFKLER-LFIF 178 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~-L~l~ 178 (443)
++++.++++++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|++.+.+|. .|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555566666 667655 35799999999999955556789999999999999998766654 5788888765 5667
Q ss_pred ccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEccc-ccCCCCCCccccCCC-CCcEEEcccCcCcc
Q 040495 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAF-NHFSGMIPPPIFNIS-SLEVISLSENRFTG 255 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~ 255 (443)
.|+++...|..+..+++|++|++++|.+.... ..+....++..+++.+ +.+....+..+..+. .++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 78888777888899999999999999887766 4555666778888865 445433344555543 5788899999887
Q ss_pred cCChhhhcCCCCCcEEeCCC-CcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCch
Q 040495 256 SLPVDAGVNLPNLRQLSPNG-NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
.+|...+ ...+++++++.+ |.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--...|
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP--- 240 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP--- 240 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC---
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC---
Confidence 7777766 567888888875 4555333356788888999999999888554433 4566666665543222223
Q ss_pred hhHhhhcCCCCCCEEEccCC
Q 040495 335 DFINLLANCSKLERLYFNRN 354 (443)
Q Consensus 335 ~~~~~~~~~~~L~~L~l~~n 354 (443)
.+.++++|+.+++.++
T Consensus 241 ----~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 ----TLEKLVALMEASLTYP 256 (350)
T ss_dssp ----CTTTCCSCCEEECSCH
T ss_pred ----CchhCcChhhCcCCCC
Confidence 2667788888888654
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=7.5e-19 Score=155.24 Aligned_cols=154 Identities=19% Similarity=0.259 Sum_probs=116.1
Q ss_pred cEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCC-ccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEcc
Q 040495 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322 (443)
Q Consensus 244 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
+++++++|.++ .+|..+ ...+++|++++|++++..+ ..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888888887 677654 3456788888888876544 446778888888888888887777778888888888888
Q ss_pred CCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcC
Q 040495 323 INNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDS 402 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 402 (443)
+|.+++..+ ..+..+++|++|++++|++++..|..+..+ ++|+.|+|++|++++..|..+..+++|++|++++
T Consensus 90 ~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 90 SNRLENVQH------KMFKGLESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp SSCCCCCCG------GGGTTCSSCCEEECTTSCCCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCccCccCH------hHhcCCcCCCEEECCCCcCCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 888877666 557777888888888888876666666653 6788888888888776677777777888888888
Q ss_pred CcCccc
Q 040495 403 NLFTGT 408 (443)
Q Consensus 403 n~~~~~ 408 (443)
|.+.+.
T Consensus 163 N~l~c~ 168 (220)
T 2v70_A 163 NPFNCN 168 (220)
T ss_dssp CCEECS
T ss_pred cCCcCC
Confidence 877644
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=9.1e-19 Score=161.63 Aligned_cols=173 Identities=20% Similarity=0.311 Sum_probs=127.4
Q ss_pred ccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCC
Q 040495 213 LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L 292 (443)
...+++|+.|++++|.+... + .+..+++|++|++++|.+++ ++. + ..+++|++|++++|.+++ ++ .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l-~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-L-ANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-c-ccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 34577888888888888743 3 47778888888888888874 443 3 378888888888888874 33 37778888
Q ss_pred CEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCC
Q 040495 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK 372 (443)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~ 372 (443)
++|++++|++++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++..| +.. .++|+
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~L~~N~l~~~~~--l~~-l~~L~ 181 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISDIVP--LAG-LTKLQ 181 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG--GTT-CTTCC
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--------hhhccCCCCCEEEccCCccccchh--hcC-CCccC
Confidence 8888888888764 4577788888888888877765 236777888888888888875433 444 37788
Q ss_pred EEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcc
Q 040495 373 QIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG 407 (443)
Q Consensus 373 ~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~ 407 (443)
.|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 182 ~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 182 NLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 88888888874 44 37777888888888887763
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.3e-18 Score=153.77 Aligned_cols=152 Identities=16% Similarity=0.245 Sum_probs=122.2
Q ss_pred cEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccC
Q 040495 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGI 323 (443)
Q Consensus 244 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 323 (443)
+.++++++.++ .+|..+ .+++++|++++|++++..+..+..+++|++|++++|++++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888887 777654 36888999999988876667888888899999999888888888888888888888888
Q ss_pred CCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCC
Q 040495 324 NNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSN 403 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n 403 (443)
|.++...+ ..+.++++|++|++++|++++..|..+..+ ++|+.|+|++|++++..+..+..+++|++|++++|
T Consensus 90 N~l~~l~~------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKITELPK------SLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCH------hHccCCCCCCEEECCCCCCCEeCHHHcCCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 88887665 557788888888888888886666666664 78888888888888666666788888888888888
Q ss_pred cCc
Q 040495 404 LFT 406 (443)
Q Consensus 404 ~~~ 406 (443)
++.
T Consensus 163 ~~~ 165 (220)
T 2v9t_B 163 PFI 165 (220)
T ss_dssp CEE
T ss_pred CcC
Confidence 775
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.2e-18 Score=154.89 Aligned_cols=163 Identities=21% Similarity=0.218 Sum_probs=133.3
Q ss_pred CCCCCCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCC
Q 040495 54 SWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133 (443)
Q Consensus 54 ~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 133 (443)
.|....+.|.|.++.|... .+ +.+|..+ .++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~------------~l-~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK------------RH-ASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECTTS------------CC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEccCC------------Cc-CccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 3555667899999988642 22 2234333 2789999999999998888889999999999999999
Q ss_pred CCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-cc
Q 040495 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DS 212 (443)
Q Consensus 134 ~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~ 212 (443)
++...+..|..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.... ..
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 98655666788999999999999998666666788999999999999998 77888899999999999999888777 66
Q ss_pred ccCCCCCCEEEcccccCCCC
Q 040495 213 LVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~ 232 (443)
+..+++|+.|++++|.+...
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTT
T ss_pred HhCCCCCCEEEeeCCCccCC
Confidence 88899999999999988754
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=8.9e-19 Score=166.94 Aligned_cols=176 Identities=18% Similarity=0.261 Sum_probs=117.7
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhc-CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGV-NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
+.++++++.+. .+|..+. ..++.|++++|.++ .++...+. .+++|++|++++|++++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 46777777776 3454443 34677777777776 44444443 56777777777777776666667777777777777
Q ss_pred cCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHh---hhccCCCEEe
Q 040495 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMA---NFSSTIKQIA 375 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~---~~~~~L~~L~ 375 (443)
+|++++..+..|..+++|+.|++++|.++...+ ..+..+++|++|++++|+++ .+|...+ ...++|+.|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR------NAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEE
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECH------HHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEE
Confidence 777776666667777777777777777776665 45667777777777777777 4555442 1136677777
Q ss_pred ccCCcCeecCchhhhcCCC--CCeEeCcCCcCc
Q 040495 376 MGRNRISGTIPPGIRSHAN--LNWLTMDSNLFT 406 (443)
Q Consensus 376 L~~n~l~~~~p~~l~~~~~--L~~L~L~~n~~~ 406 (443)
|++|++++..+..+..++. ++.|+|++|++.
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 7777777544455666665 366777777665
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.1e-18 Score=152.27 Aligned_cols=155 Identities=17% Similarity=0.267 Sum_probs=121.0
Q ss_pred CcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEcc
Q 040495 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322 (443)
Q Consensus 243 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
-+.++.+++.++ .+|..+ .++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|+.|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 467888888876 777654 3788888888888887778888888888888888888876666667888888888888
Q ss_pred CCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcC
Q 040495 323 INNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDS 402 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 402 (443)
+|.+++..+ ..+..+++|++|++++|+++ .+|..+..+ ++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 97 ~N~l~~l~~------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 97 TNQLTVLPS------AVFDRLVHLKELFMCCNKLT-ELPRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp SSCCCCCCT------TTTTTCTTCCEEECCSSCCC-SCCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCcCCccCh------hHhCcchhhCeEeccCCccc-ccCcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 888887666 45677888888888888888 777777664 7788888888888855556677788888888888
Q ss_pred CcCcccC
Q 040495 403 NLFTGTI 409 (443)
Q Consensus 403 n~~~~~~ 409 (443)
|++....
T Consensus 169 N~~~c~c 175 (229)
T 3e6j_A 169 NPWDCEC 175 (229)
T ss_dssp SCBCTTB
T ss_pred CCccCCc
Confidence 8877544
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1e-18 Score=161.24 Aligned_cols=171 Identities=23% Similarity=0.330 Sum_probs=85.7
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +| .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 44555555555555442 22 24445555555555555543222 4445555555555555442 11 24444444444
Q ss_pred eeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcc
Q 040495 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 255 (443)
++++|.++ +. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 118 ~L~~n~i~------------------------~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 118 SLEHNGIS------------------------DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp ECTTSCCC------------------------CC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred ECCCCcCC------------------------CC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 44444444 22 2333444555555555555432 345555566666666665553
Q ss_pred cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcc
Q 040495 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG 304 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 304 (443)
++. + ..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 171 -~~~-l-~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 -IVP-L-AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CGG-G-TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -chh-h-cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 222 2 256666666666666653 33 25666666666666666654
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=151.89 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=130.6
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.+++++|.++. +|..+. ..+++|++++|.+++..+...+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 578999988874 666553 45689999999998555555555789999999999999877777899999999999999
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCC
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n 379 (443)
|++++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N 163 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN------DSFIGLSSVRLLSLYDNQITTVAPGAFDTL-HSLSTLNLLAN 163 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT------TSSTTCTTCSEEECTTSCCCCBCTTTTTTC-TTCCEEECCSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH------hHcCCCccCCEEECCCCcCCEECHHHhcCC-CCCCEEEecCc
Confidence 99998888888999999999999999998877 567888999999999999997767777764 78999999999
Q ss_pred cCeecCc
Q 040495 380 RISGTIP 386 (443)
Q Consensus 380 ~l~~~~p 386 (443)
++++..+
T Consensus 164 ~l~c~c~ 170 (220)
T 2v70_A 164 PFNCNCY 170 (220)
T ss_dssp CEECSGG
T ss_pred CCcCCCc
Confidence 9886543
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=3e-18 Score=173.16 Aligned_cols=167 Identities=22% Similarity=0.301 Sum_probs=74.8
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 154 (443)
+++.|+++++.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+++ +| .+..+++|++|+++
T Consensus 44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 344444544444332 1 24444555555555554443222 4445555555555554442 22 34444555555555
Q ss_pred CCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCC
Q 040495 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP 234 (443)
Q Consensus 155 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
+|.+.+ + +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 118 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-- 190 (605)
T 1m9s_A 118 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-- 190 (605)
T ss_dssp TSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--
T ss_pred CCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--
Confidence 554442 1 2344444455555555544432 334444444444444444443333 44444444444444444432
Q ss_pred ccccCCCCCcEEEcccCcCc
Q 040495 235 PPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 235 ~~l~~l~~L~~L~l~~n~l~ 254 (443)
+.+..+++|+.|++++|.++
T Consensus 191 ~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GGGTTCTTCSEEECCSEEEE
T ss_pred hHHccCCCCCEEEccCCcCc
Confidence 23444444444444444443
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.2e-18 Score=151.17 Aligned_cols=154 Identities=16% Similarity=0.247 Sum_probs=125.1
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+. +++++|++++|.++ .++...+..+++|++|++++|++++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56888888877 4565544 68899999999988 55554444788999999999999887788899999999999999
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCC
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n 379 (443)
|++++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+.. .++|+.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRV------DAFQDLHNLNLLSLYDNKLQTIAKGTFSP-LRAIQTMHLAQN 162 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCH------HHcCCCCCCCEEECCCCcCCEECHHHHhC-CCCCCEEEeCCC
Confidence 99997766678889999999999999988877 56888899999999999998555555555 478999999999
Q ss_pred cCeec
Q 040495 380 RISGT 384 (443)
Q Consensus 380 ~l~~~ 384 (443)
++...
T Consensus 163 ~~~c~ 167 (220)
T 2v9t_B 163 PFICD 167 (220)
T ss_dssp CEECS
T ss_pred CcCCC
Confidence 88753
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=2.5e-18 Score=173.70 Aligned_cols=190 Identities=21% Similarity=0.288 Sum_probs=112.9
Q ss_pred CccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEccc
Q 040495 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSE 250 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 250 (443)
++..+.+..+.+.+.. .+..+++|+.|++++|.+... +.+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3444455555554332 245666777777777766543 346666777777777777665433 66667777777777
Q ss_pred CcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccC
Q 040495 251 NRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT 330 (443)
Q Consensus 251 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
|.++ .+| .+. .+++|++|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 97 N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIK-DLS-SLK-DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCC-CCT-TST-TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCC-CCh-hhc-cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 7665 333 233 56666666666666663 2 3356666666666666666654 34566666666666666665543
Q ss_pred CCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCee
Q 040495 331 ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISG 383 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 383 (443)
+ +..+++|+.|+|++|++++ +| .+.. +++|+.|+|++|++++
T Consensus 170 ~--------l~~l~~L~~L~Ls~N~i~~-l~-~l~~-l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P--------LAGLTKLQNLYLSKNHISD-LR-ALAG-LKNLDVLELFSQECLN 211 (605)
T ss_dssp G--------GTTCTTCCEEECCSSCCCB-CG-GGTT-CTTCSEEECCSEEEEC
T ss_pred h--------hccCCCCCEEECcCCCCCC-Ch-HHcc-CCCCCEEEccCCcCcC
Confidence 3 5556666666666666663 33 2444 2566666666666654
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=7.4e-21 Score=191.08 Aligned_cols=220 Identities=15% Similarity=0.112 Sum_probs=123.6
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccE
Q 040495 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLER 174 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 174 (443)
...++|+.|+|++|.++ .+|..++++++|+.|++++|......|..+ ..+...+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 34555666666666554 556666666666666654442100000000 000123344455555555655
Q ss_pred ee-eeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcC
Q 040495 175 LF-IFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 175 L~-l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 253 (443)
|+ ++.|.+. .|+.+.+.+|.+..... ..|+.|++++|.+++ +|. +..+++|+.|++++|.+
T Consensus 414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 414 VDPMRAAYLD-----------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp HCGGGHHHHH-----------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred Ccchhhcccc-----------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence 55 4444322 11112222222221111 136666777776664 454 66677777777777777
Q ss_pred cccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcccc-chhhhCCCCCCEEEccCCCCcccCCC
Q 040495 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSFLNMGINNLGTRTAN 332 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~ 332 (443)
+ .+|..+. .+++|+.|++++|++++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|.+++.++.
T Consensus 476 ~-~lp~~~~-~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 476 R-ALPPALA-ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp C-CCCGGGG-GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred c-ccchhhh-cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 6 6666555 67777777777777774 55 6777777777777777777665 77777777777777777777776552
Q ss_pred chhhHhhhcCCCCCCEEEc
Q 040495 333 ELDFINLLANCSKLERLYF 351 (443)
Q Consensus 333 ~~~~~~~~~~~~~L~~L~l 351 (443)
.. ..+..+++|+.|++
T Consensus 552 ~~---~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QE---RLAEMLPSVSSILT 567 (567)
T ss_dssp TT---HHHHHCTTCSEEEC
T ss_pred HH---HHHHHCcccCccCC
Confidence 21 23445677777753
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=6.6e-20 Score=189.77 Aligned_cols=260 Identities=19% Similarity=0.151 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCCCCCCCC-CCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEE----
Q 040495 30 SNETDRLALLAIKLQLH-DPLGVTSSWNN-SMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYI---- 103 (443)
Q Consensus 30 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L---- 103 (443)
..+.++.+++++..... ..+.....|.. ....+.|.+..+.. .+++.|++.++.+... +..+.....|+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDE 205 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccC
Confidence 34567788888887664 22223345643 23456787776654 5788999988877653 3222222222222
Q ss_pred -eCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeecccc
Q 040495 104 -NLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHI 182 (443)
Q Consensus 104 -~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 182 (443)
++..|.+. ..+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 22233333 45677788888888888888887 77777778888888888888888 7888888888888888888888
Q ss_pred CccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCC-CcEEEcccCcCcccCChhh
Q 040495 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISS-LEVISLSENRFTGSLPVDA 261 (443)
Q Consensus 183 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~ 261 (443)
+ .+|..++.+++|++|++++|.+...+..++.+++|++|++++|.+++.+|..+..... +..+++++|.+++.+|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred C-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 8 6788888888888888888887766666778888888888888887776666544321 22356777777766653
Q ss_pred hcCCCCCcEEeCCCC--------cCCccCCccCcCCCCCCEEecccCcCc
Q 040495 262 GVNLPNLRQLSPNGN--------NFTGSIPVSLSNASRLEMIEFSRNQFS 303 (443)
Q Consensus 262 ~~~~~~L~~L~L~~n--------~l~~~~~~~l~~~~~L~~L~l~~n~l~ 303 (443)
.++.|+++.| .+.+..+..+..+..++...++.|-+.
T Consensus 360 -----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 -----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----C-----------------------------------------CCC
T ss_pred -----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3444555544 223233333444455555555555543
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=6e-18 Score=161.18 Aligned_cols=177 Identities=20% Similarity=0.244 Sum_probs=147.3
Q ss_pred CEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCcccc-CCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCC
Q 040495 197 LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275 (443)
Q Consensus 197 ~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~ 275 (443)
+.++++++.+...+..+. +.++.|++++|.+++..+..+. .+++|++|++++|.++ .++...+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence 678999988887664443 4689999999999987777777 8999999999999998 55554445899999999999
Q ss_pred CcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhh---cCCCCCCEEEcc
Q 040495 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL---ANCSKLERLYFN 352 (443)
Q Consensus 276 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~---~~~~~L~~L~l~ 352 (443)
|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.++.... ..+ ..+++|+.|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV------ELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG------GGTC----CTTCCEEECC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH------HHhcCcccCCcCCEEECC
Confidence 99997777789999999999999999999888999999999999999999998665 334 678999999999
Q ss_pred CCcCcccCC-hhHhhhccC--CCEEeccCCcCeec
Q 040495 353 RNRFQGVLP-QSMANFSST--IKQIAMGRNRISGT 384 (443)
Q Consensus 353 ~n~l~~~~p-~~~~~~~~~--L~~L~L~~n~l~~~ 384 (443)
+|+++ .+| ..+..+ +. ++.|++++|++...
T Consensus 172 ~N~l~-~l~~~~~~~l-~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 172 SNKLK-KLPLTDLQKL-PAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SSCCC-CCCHHHHHHS-CHHHHTTEECCSSCEECC
T ss_pred CCCCC-ccCHHHhhhc-cHhhcceEEecCCCccCC
Confidence 99999 555 445543 44 48899999998753
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.3e-18 Score=148.44 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=92.8
Q ss_pred CCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCC
Q 040495 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 344 (443)
+++|++|++++|+++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+ ..+..++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~------~~l~~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKI------PNLSGLT 112 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGS------CCCTTCT
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccC------hhhcCCC
Confidence 445555555555555 333 35555566666666664432 2345566666666666666665444 3355666
Q ss_pred CCCEEEccCCcCcccCChhHhhhccCCCEEeccCCc-CeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEE
Q 040495 345 KLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR-ISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLD 423 (443)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 423 (443)
+|++|++++|++++..|..+..+ ++|+.|++++|+ ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTC-SSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhC-CCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 77777777777766566666553 677777777776 44 455 56777777777777777773 44 567777788888
Q ss_pred ccCCcCcc
Q 040495 424 LGGNFLQG 431 (443)
Q Consensus 424 l~~n~l~~ 431 (443)
+++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 88887753
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=4.2e-18 Score=147.84 Aligned_cols=152 Identities=21% Similarity=0.228 Sum_probs=85.6
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccE
Q 040495 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLER 174 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 174 (443)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666665 444 4666666666666666443 2335566666666666666666555566666666666
Q ss_pred eeeeccccCccCCccccCCCCCCEEEccCCc-CCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcC
Q 040495 175 LFIFHNHITGQLPASIGNLSSLLAFDVRENI-LWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 175 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 253 (443)
|++++|.+++..+..+..+++|++|++++|. +.. .+.+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 6666666665555555566666666665554 322 2344555555555555555543 22 344455555555555544
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=2.3e-20 Score=187.49 Aligned_cols=204 Identities=20% Similarity=0.203 Sum_probs=149.6
Q ss_pred cCCCCceeeccCCcccccCCccccCCcCccEeeeeccc-------------cCccCCccccCCCCCCEEE-ccCCcCCcc
Q 040495 144 RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH-------------ITGQLPASIGNLSSLLAFD-VRENILWGR 209 (443)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n~l~~~ 209 (443)
.+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--- 422 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--- 422 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence 3455555555555554 455555555555555554432 3445556666666666666 443322
Q ss_pred cccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCC
Q 040495 210 IDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNA 289 (443)
Q Consensus 210 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 289 (443)
.+|+.+.+++|.+... +. ..|+.|++++|.++ .+|. +. .+++|+.|++++|.++ .+|..++.+
T Consensus 423 -------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 423 -------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp -------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred -------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhcC
Confidence 2344455666665532 11 25899999999998 5786 54 8999999999999999 889999999
Q ss_pred CCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccC-CCchhhHhhhcCCCCCCEEEccCCcCcccCCh--hHhh
Q 040495 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT-ANELDFINLLANCSKLERLYFNRNRFQGVLPQ--SMAN 366 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~ 366 (443)
++|+.|++++|++++ +| .++.+++|+.|++++|.+++.. | ..+..+++|+.|++++|++++..|. .+..
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p------~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI------QPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT------GGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc------HHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 999999999999997 56 7999999999999999999986 6 6788999999999999999966553 2333
Q ss_pred hccCCCEEec
Q 040495 367 FSSTIKQIAM 376 (443)
Q Consensus 367 ~~~~L~~L~L 376 (443)
..++|+.|++
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 3588999875
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=6.5e-18 Score=153.44 Aligned_cols=170 Identities=19% Similarity=0.293 Sum_probs=112.7
Q ss_pred CCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEE
Q 040495 216 LRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMI 295 (443)
Q Consensus 216 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 295 (443)
+.+++.++++++.+.+.. .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 345566667777666332 4566777888888887776 555 333 57777888887777774433 7777777777
Q ss_pred ecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEe
Q 040495 296 EFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIA 375 (443)
Q Consensus 296 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ 375 (443)
++++|++++. +. +.. ++|+.|++++|.+++.. .+..+++|++|++++|++++ ++ .+.. .++|+.|+
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~Ls~N~i~~-~~-~l~~-l~~L~~L~ 156 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDTD--------SLIHLKNLEILSIRNNKLKS-IV-MLGF-LSKLEVLD 156 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBSG--------GGTTCTTCCEEECTTSCCCB-CG-GGGG-CTTCCEEE
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCCh--------hhcCcccccEEECCCCcCCC-Ch-HHcc-CCCCCEEE
Confidence 7777777753 22 222 77777777777776642 26677777777777777774 33 3444 36777777
Q ss_pred ccCCcCeecCchhhhcCCCCCeEeCcCCcCccc
Q 040495 376 MGRNRISGTIPPGIRSHANLNWLTMDSNLFTGT 408 (443)
Q Consensus 376 L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~ 408 (443)
+++|++++. ..+..+++|+.|++++|.+++.
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 777777754 5566777777777777777643
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.9e-18 Score=178.81 Aligned_cols=194 Identities=17% Similarity=0.185 Sum_probs=124.3
Q ss_pred EEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCc
Q 040495 222 LDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301 (443)
Q Consensus 222 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 301 (443)
+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..+..+++|++|+|++|.
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 344444444 45677888999999999999998 8888888 7999999999999999 889889999999999999999
Q ss_pred CccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcC
Q 040495 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRI 381 (443)
Q Consensus 302 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l 381 (443)
++ .+|..++.+++|++|+|++|.++.. | ..+..+++|++|+|++|.+++.+|..+.........+++++|.+
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~~l-p------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVTTL-P------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCCCC-C------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCCcc-C------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 99 6788899999999999999999744 4 34889999999999999999888887765433344578999999
Q ss_pred eecCchhhhcCCCCCeEeCcCC--------cCcccCchhhcCCCCCCEEEccCCcCcccC
Q 040495 382 SGTIPPGIRSHANLNWLTMDSN--------LFTGTIPPVIGELKNLQLLDLGGNFLQGSI 433 (443)
Q Consensus 382 ~~~~p~~l~~~~~L~~L~L~~n--------~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 433 (443)
+|.+|.. |+.|+++.| .+.+..+..+..+..++...+++|-+.+..
T Consensus 354 ~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 354 EIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp CCCCCCC-----------------------------------------------CCCGGG
T ss_pred cCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccccc
Confidence 9988864 455667666 333344445566677778888888876433
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.2e-17 Score=149.97 Aligned_cols=149 Identities=26% Similarity=0.288 Sum_probs=69.9
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCcc
Q 040495 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 173 (443)
+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ +|.. .. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCC
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-Cccc
Confidence 445555555555555554 233 35555555555555555553222 5555555555555555542 2221 11 4555
Q ss_pred EeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcC
Q 040495 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 253 (443)
+|++++|.+++. ..+..+++|++|++++|.+++. +.+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 555555555431 2344444455555444444432 2334444444444444444433 3334444444444444443
Q ss_pred c
Q 040495 254 T 254 (443)
Q Consensus 254 ~ 254 (443)
+
T Consensus 185 ~ 185 (263)
T 1xeu_A 185 V 185 (263)
T ss_dssp E
T ss_pred c
Confidence 3
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=7.5e-18 Score=158.45 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCC-EEeccCCcCeecCchhhhc
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK-QIAMGRNRISGTIPPGIRS 391 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~-~L~L~~n~l~~~~p~~l~~ 391 (443)
+++|+.+++++|+++.... ..|.+|.+|+++++.+| ++ .++...+..+++|+ .+++.+ .++..-+..|.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~------~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD------FTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCCEECT------TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTT
T ss_pred cCCCeEEECCCCCcceecH------hhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhC
Confidence 5555555555555555444 44555666666666555 44 34433333345566 666655 454344456666
Q ss_pred CCCCCeEeCcCCcCcccCchhhcCCCCCCEEE
Q 040495 392 HANLNWLTMDSNLFTGTIPPVIGELKNLQLLD 423 (443)
Q Consensus 392 ~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 423 (443)
|++|+.+++++|.++..-+.+|.++++|+.++
T Consensus 296 c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66666666666666633344666666666665
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=2.3e-16 Score=133.10 Aligned_cols=137 Identities=19% Similarity=0.192 Sum_probs=93.1
Q ss_pred CCCCEEecccCcCc-cccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc
Q 040495 290 SRLEMIEFSRNQFS-GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (443)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. . .+..+++|++|++++|++++.+|..+..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l- 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-------NLPKLPKLKKLELSENRIFGGLDMLAEKL- 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-------SCCCCSSCCEEEEESCCCCSCCCHHHHHC-
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-------hhccCCCCCEEECcCCcCchHHHHHHhhC-
Confidence 45555555555555 44455555566666666666665554 1 25667777777777777776566655553
Q ss_pred cCCCEEeccCCcCeec-CchhhhcCCCCCeEeCcCCcCcccCc---hhhcCCCCCCEEEccCCcCcccCCcc
Q 040495 369 STIKQIAMGRNRISGT-IPPGIRSHANLNWLTMDSNLFTGTIP---PVIGELKNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
++|+.|++++|++++. .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+. ++|++
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 7788888888888753 22677888888888888888884443 37788888888888888876 66654
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.8e-16 Score=135.61 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=109.0
Q ss_pred cEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccch-hhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCC
Q 040495 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV-DFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLE 347 (443)
Q Consensus 269 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~ 347 (443)
+.+++++|+++ .+|..+. .++++|++++|++++..+. .+..+++|++|++++|.+++..+ ..+.++++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP------NAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT------TTTTTCTTCC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH------hHcCCcccCC
Confidence 68899999986 6776554 3899999999999877664 48889999999999999988877 5688888999
Q ss_pred EEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 348 RLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 348 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
+|++++|++++..+..+..+ ++|+.|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EEECCSCCCCEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999987666666664 789999999999998888888888899999999998886654
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=4.1e-16 Score=134.54 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=71.5
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.+. .+|..+.. ++++|++++|.+++..+...+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44555555553 34443322 5556666666555322222223555666666666666555555555666666666666
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccC
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 360 (443)
|++++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP------GSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT------TSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH------HHhhcCCCCCEEEeCCCCccCcC
Confidence 66665555555555666666666666555544 34455555666666666555443
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=2.1e-16 Score=148.51 Aligned_cols=281 Identities=12% Similarity=0.089 Sum_probs=171.2
Q ss_pred CcEEEEEcCCCCCcccccccccC-CCCCCEEeCCCCcCC--CCCchhhcCCCccCeEEccCCCCCCCCChhhhc------
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGN-LSFLRYINLANNGFL--GEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSR------ 144 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~------ 144 (443)
.++++|.++++ +.+.-...+.. +++|++|||++|.+. ..... .++.++.+.+..+.+. +..|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccc
Confidence 35677777653 11111122333 788999999999887 21111 2222444555554332 344555
Q ss_pred --CCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcC----Cccc-ccccCCC
Q 040495 145 --RSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL----WGRI-DSLVQLR 217 (443)
Q Consensus 145 --l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~-~~l~~l~ 217 (443)
+++|+.+++.. .++..-+.+|.+|++|+.+++.+|.+....+..|..+.++..+....... .... ..+..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88899988888 77755566788888999999988888766667777777777776655321 1111 3344555
Q ss_pred CCC-EEEcccccCCCCCCccc----cCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCC
Q 040495 218 NLR-LLDIAFNHFSGMIPPPI----FNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292 (443)
Q Consensus 218 ~L~-~L~l~~n~~~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L 292 (443)
.|+ .+.+.... .++..+ ....+++.+.+.++-.. .....+...+++|+++++++|+++...+..|.++++|
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 555 34433211 111111 12345566666554221 1111222236788888888877775556678888888
Q ss_pred CEEecccCcCccccchhhhCCCCCC-EEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCC
Q 040495 293 EMIEFSRNQFSGRVSVDFSRLKNLS-FLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTI 371 (443)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L 371 (443)
+++++.+| +....+..|.++++|+ .+++.. .++...+ .+|.+|++|+.+++++|.++ .++...+.-+++|
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~------~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L 323 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF------GAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPS 323 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT------TTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch------hhhhCCccCCEEEeCCCccC-ccchhhhcCCcch
Confidence 88888776 6666666788888888 888877 6666555 56788888888888888887 4444333335777
Q ss_pred CEEe
Q 040495 372 KQIA 375 (443)
Q Consensus 372 ~~L~ 375 (443)
+.++
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 7765
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=4.3e-16 Score=128.63 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=83.5
Q ss_pred CCCCEEecccCcCc-cccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc
Q 040495 290 SRLEMIEFSRNQFS-GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (443)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l- 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNRVSGGLEVLAEKC- 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSCCCSCTHHHHHHC-
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCcccchHHHHhhhC-
Confidence 44555555555555 44555555556666666666655554 125566777777777777775566655543
Q ss_pred cCCCEEeccCCcCeec-CchhhhcCCCCCeEeCcCCcCcccCc---hhhcCCCCCCEEEccC
Q 040495 369 STIKQIAMGRNRISGT-IPPGIRSHANLNWLTMDSNLFTGTIP---PVIGELKNLQLLDLGG 426 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~l~~ 426 (443)
++|+.|++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++||+++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6777777777777753 34667778888888888888875444 4677788888887763
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=5.8e-16 Score=130.58 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=94.4
Q ss_pred CCCCcEEeCCCCcCC-ccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCC
Q 040495 265 LPNLRQLSPNGNNFT-GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANC 343 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 343 (443)
.+++++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ ..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD------MLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC------HHHHHC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH------HHHhhC
Confidence 456777777777766 56666667777777777777777755 556777777777777777776554 455567
Q ss_pred CCCCEEEccCCcCcccCC--hhHhhhccCCCEEeccCCcCeecCc---hhhhcCCCCCeEeCcCCcCcccCch
Q 040495 344 SKLERLYFNRNRFQGVLP--QSMANFSSTIKQIAMGRNRISGTIP---PGIRSHANLNWLTMDSNLFTGTIPP 411 (443)
Q Consensus 344 ~~L~~L~l~~n~l~~~~p--~~~~~~~~~L~~L~L~~n~l~~~~p---~~l~~~~~L~~L~L~~n~~~~~~p~ 411 (443)
++|++|++++|++++ +| ..+.. .++|+.|++++|++++..+ ..+..+++|++|++++|.+. .+|+
T Consensus 95 ~~L~~L~Ls~N~l~~-~~~~~~l~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 95 PNLTHLNLSGNKLKD-ISTLEPLKK-LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp TTCCEEECBSSSCCS-SGGGGGGSS-CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCCEEeccCCccCc-chhHHHHhc-CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 777777777777774 33 44444 3678888888888775433 36777888888888888776 4554
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.6e-16 Score=129.09 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=101.8
Q ss_pred CcEEEEEcCCCCCc-ccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceee
Q 040495 74 QRVTRLDLRNQSIG-GPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELS 152 (443)
Q Consensus 74 ~~v~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 152 (443)
.+++.|+++++.+. +.+|..+..+++|++|++++|.+++. ..++++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46788899988887 67788788888999999998888755 6688888899999999988876788777888899999
Q ss_pred ccCCccccc-CCccccCCcCccEeeeeccccCccCC---ccccCCCCCCEEEcc
Q 040495 153 VDTNYLVGE-IPSAIGSLFKLERLFIFHNHITGQLP---ASIGNLSSLLAFDVR 202 (443)
Q Consensus 153 l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~ 202 (443)
+++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 988888752 34677888888888888888886544 357777777777764
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=9.9e-15 Score=124.12 Aligned_cols=133 Identities=18% Similarity=0.308 Sum_probs=95.7
Q ss_pred CcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCC
Q 040495 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLE 347 (443)
Q Consensus 268 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~ 347 (443)
.+.+++++++++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD------GVFDKLTKLT 79 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT------TTTTTCTTCC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh------hHccCCCccC
Confidence 467888888877 455433 3688888888888887666667788888888888888877665 4567778888
Q ss_pred EEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 348 RLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 348 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
+|++++|++++..+..+.. .++|+.|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 80 ~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDK-LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCCccccCHHHhhC-CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888888887444444444 3678888888888775444445677778888888887776544
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.7e-14 Score=122.63 Aligned_cols=133 Identities=17% Similarity=0.270 Sum_probs=111.1
Q ss_pred CcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEcc
Q 040495 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322 (443)
Q Consensus 243 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
.+.+++++++++ .+|..+ .+++++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 478899999887 777553 4789999999999987666778899999999999999998777778999999999999
Q ss_pred CCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCc
Q 040495 323 INNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP 386 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p 386 (443)
+|.+++..+ ..+..+++|++|++++|+++ .+|.......++|+.|++++|++.+..|
T Consensus 85 ~N~l~~~~~------~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPN------GVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCT------TTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCH------HHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998776 56788999999999999998 5555543334889999999999987654
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=8.1e-15 Score=124.52 Aligned_cols=130 Identities=19% Similarity=0.219 Sum_probs=61.6
Q ss_pred CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCC
Q 040495 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANC 343 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 343 (443)
++.+|++|++++|+++ .+|......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ ..+..+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~------~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE------GLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS------CHHHHC
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc------chhhcC
Confidence 3455555555555555 2333222222555555555555543 234444444555554444444332 223344
Q ss_pred CCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCch--hhhcCCCCCeEeCcCCcCcccCchh----hcCCC
Q 040495 344 SKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP--GIRSHANLNWLTMDSNLFTGTIPPV----IGELK 417 (443)
Q Consensus 344 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~L~~n~~~~~~p~~----~~~l~ 417 (443)
+ +|+.|++++|+++ .+|. .+..+++|+.|++++|.++ .+|.. +..++
T Consensus 88 ~-------------------------~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 88 P-------------------------DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP 140 (176)
T ss_dssp T-------------------------TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred C-------------------------CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence 4 4555555555553 3333 4445555555555555554 33432 44555
Q ss_pred CCCEEEccCCcC
Q 040495 418 NLQLLDLGGNFL 429 (443)
Q Consensus 418 ~L~~L~l~~n~l 429 (443)
+|+.||+++|..
T Consensus 141 ~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 141 QVRVLDFQKVKL 152 (176)
T ss_dssp TCSEETTEECCH
T ss_pred ccceeCCCcCCH
Confidence 555555555544
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.3e-14 Score=123.56 Aligned_cols=126 Identities=22% Similarity=0.238 Sum_probs=89.9
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCc
Q 040495 78 RLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 157 (443)
.++++++.+.. +|..+ .++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 46666776653 44433 257888888888887 677778888888888888888887666777888888888888888
Q ss_pred ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCC
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 207 (443)
+++..|..|..+++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 87666666777777777777777777544445666666666666665443
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.3e-14 Score=122.52 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=66.8
Q ss_pred EEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccC
Q 040495 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300 (443)
Q Consensus 221 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 300 (443)
.++++++.+. .+|..+. ++|++|++++|.++ .+|..+. .+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4455555544 2333322 34555555555555 4553332 4555555555555555444455555555555555555
Q ss_pred cCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 301 QFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 301 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
++++..+..|..+++|+.|++++|.++...+ ..+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE------GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT------TTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh------hhhhcCccccEEEeCCCCee
Confidence 5555555555555555555555555554444 33445555555555555554
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=1.4e-13 Score=132.27 Aligned_cols=264 Identities=12% Similarity=0.093 Sum_probs=123.0
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeee
Q 040495 98 SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 177 (443)
..++.+.+..+ ++..-..+|.++ +|+.+.+..+ ++......|.+ .+|+.+.+.. .+...-+..|.+|.+|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 34444444322 332223334443 4555555443 33233334444 2455555543 333233344455555555555
Q ss_pred eccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccC
Q 040495 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 257 (443)
.+|.++......|. +.+ |+.+.+..+ +...-..+|.++++|+.+++.++ ++ .+
T Consensus 188 ~~n~l~~I~~~aF~-~~~-----------------------L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I 240 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAG-----------------------IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TI 240 (401)
T ss_dssp TTSCCSEECTTTTT-TCC-----------------------CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EE
T ss_pred CCCcceEechhhEe-ecc-----------------------cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Cc
Confidence 55444422222222 344 444444422 22222334445555555555443 22 34
Q ss_pred ChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCc-----cccchhhhCCCCCCEEEccCCCCcccCCC
Q 040495 258 PVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS-----GRVSVDFSRLKNLSFLNMGINNLGTRTAN 332 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 332 (443)
+...+.+ .+|+.+.+. +.++..-...|.+|++|+.+++.++.+. ......|.+|++|+.+++. +.++....
T Consensus 241 ~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~- 316 (401)
T 4fdw_A 241 GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ- 316 (401)
T ss_dssp CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-
T ss_pred ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-
Confidence 4444422 455555552 2333333445555666666666555443 2334456666666666665 33444443
Q ss_pred chhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC-CCCeEeCcCCcC
Q 040495 333 ELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA-NLNWLTMDSNLF 405 (443)
Q Consensus 333 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~L~~n~~ 405 (443)
.+|.+|.+|+.+.+.++ ++ .+....+..+ +|+.+++++|.+....+..+..++ +++.+++..+.+
T Consensus 317 -----~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 317 -----GLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -----TTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -----hhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 45666666666666443 44 3333222223 566666666655533334444442 566666665543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=2.1e-14 Score=121.91 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=108.1
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+.++++|++|++++|.++ .+|. +....++|++|++++|++++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4567889999999999998 6664 442445999999999999964 67899999999999999999876666799999
Q ss_pred CCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChh----HhhhccCCCEEeccCCcCe
Q 040495 316 LSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQS----MANFSSTIKQIAMGRNRIS 382 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~----~~~~~~~L~~L~L~~n~l~ 382 (443)
|++|++++|.++.... ...+..+++|++|++++|+++ .+|.. +.. +++|+.||+++|...
T Consensus 90 L~~L~L~~N~i~~~~~-----~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~-l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGD-----LDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYK-VPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGG-----GGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHH-CTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchh-----hHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHH-CCccceeCCCcCCHH
Confidence 9999999999965432 135778888999999988887 55654 444 467777777777655
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=4.4e-13 Score=128.76 Aligned_cols=225 Identities=8% Similarity=0.040 Sum_probs=143.6
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcC
Q 040495 92 PYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFK 171 (443)
Q Consensus 92 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 171 (443)
.+|.+. +|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .++...+..|.++++|+.+++..|.++......|. +.+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 356664 7999999876 664555667774 799999986 66656678899999999999999998844444555 689
Q ss_pred ccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEccc
Q 040495 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSE 250 (443)
Q Consensus 172 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 250 (443)
|+.+.+..+ ++..-...|.++++|+.+.+..+ +.... ..+.. .+|+.+.+. +.+...-...|.++++|+.+.+.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 999999854 65455667888889999988765 33222 44444 677777774 334433345666777777777766
Q ss_pred CcCc----ccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCC
Q 040495 251 NRFT----GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL 326 (443)
Q Consensus 251 n~l~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
+.+. ..++...+.++++|+.+.+.. .++..-...|.+|++|+.+.+..+ ++......|.++ +|+.+++..|.+
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 6543 124444454555666666552 344333445555555555555332 443344445555 555555555544
Q ss_pred cc
Q 040495 327 GT 328 (443)
Q Consensus 327 ~~ 328 (443)
..
T Consensus 358 ~~ 359 (401)
T 4fdw_A 358 PQ 359 (401)
T ss_dssp CB
T ss_pred cc
Confidence 33
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=5.6e-13 Score=128.33 Aligned_cols=326 Identities=11% Similarity=-0.000 Sum_probs=206.4
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcC
Q 040495 92 PYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFK 171 (443)
Q Consensus 92 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 171 (443)
.+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++ ++......|.++++|+.+.+..+ +.......|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 45777888888888643 55444566788888888888654 44344566777888887766543 33233344555543
Q ss_pred ccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccC
Q 040495 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSEN 251 (443)
Q Consensus 172 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 251 (443)
++....... .......|.++++|+.+.+..+...-....+..+.+|+.+.+..+ +.......+.++..|+.+.+..+
T Consensus 142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp SEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccccCccc--cccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 333322221 112334677788888888876543322266777788888877655 33233455667777777776655
Q ss_pred cCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCC
Q 040495 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTA 331 (443)
Q Consensus 252 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 331 (443)
... +....+ ....|+.+.+.... +..-...+..+..++.+.+..+... .....|..+..++.+....+.+..
T Consensus 219 ~~~--i~~~~~-~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~--- 290 (394)
T 4fs7_A 219 LYY--LGDFAL-SKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE--- 290 (394)
T ss_dssp CCE--ECTTTT-TTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT---
T ss_pred ceE--eehhhc-ccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc---
Confidence 332 222233 45678887776432 2233456777888888888766433 445567788888888776553221
Q ss_pred CchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCch
Q 040495 332 NELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPP 411 (443)
Q Consensus 332 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~ 411 (443)
..+..+.+|+.+.+.++ ++ .++...+..+++|+.+++.++ ++..-...|.+|++|+.+++..+ ++..-..
T Consensus 291 ------~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 291 ------KTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp ------TTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ------ccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 45778889999988765 55 454444443688999998754 55445677888999999999776 5533345
Q ss_pred hhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 412 VIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
+|.++++|+.+++..+ +. .+...|.++++|
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence 7888999999999765 32 344567666543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=3e-16 Score=136.18 Aligned_cols=152 Identities=23% Similarity=0.324 Sum_probs=111.2
Q ss_pred CCCCcEEeCCCCcCCccCCc------cCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHh
Q 040495 265 LPNLRQLSPNGNNFTGSIPV------SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFIN 338 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~~~~~------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 338 (443)
...++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++.. + .
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~------~ 87 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-E------N 87 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-S------S
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-c------c
Confidence 34555555555555555544 67778888888888888876 45 677888888888888887743 3 3
Q ss_pred hhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCc-hhhhcCCCCCeEeCcCCcCcccCch------
Q 040495 339 LLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP-PGIRSHANLNWLTMDSNLFTGTIPP------ 411 (443)
Q Consensus 339 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~n~~~~~~p~------ 411 (443)
.+..+++|++|++++|++++ +| .+..+ ++|+.|++++|++++..+ ..+..+++|++|++++|.+.+..|.
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~-l~-~~~~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIAS-LS-GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCC-HH-HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred hhhcCCcCCEEECcCCcCCc-CC-ccccC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 34556788999999998884 55 45553 789999999999885322 4688889999999999998876654
Q ss_pred ----hhcCCCCCCEEEccCCcCc
Q 040495 412 ----VIGELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 412 ----~~~~l~~L~~L~l~~n~l~ 430 (443)
.+..+++|+.|| +|.++
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHhCCCcEEEC--CcccC
Confidence 377889999887 66665
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=4.9e-16 Score=134.79 Aligned_cols=137 Identities=23% Similarity=0.292 Sum_probs=117.3
Q ss_pred CcCCCCCCEEecccCcCccccch------hhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCccc
Q 040495 286 LSNASRLEMIEFSRNQFSGRVSV------DFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV 359 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 359 (443)
+.....++.++++.+.++|..|. .+..+++|++|++++|.+++.. .+..+++|++|++++|+++ .
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--------~~~~l~~L~~L~l~~n~l~-~ 84 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIK-K 84 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--------CHHHHTTCCEEEEEEEEEC-S
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--------ccccCCCCCEEECCCCCcc-c
Confidence 45566788888888888887776 8999999999999999998843 3677899999999999999 7
Q ss_pred CChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc--hhhcCCCCCCEEEccCCcCcccCCc
Q 040495 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP--PVIGELKNLQLLDLGGNFLQGSIPS 435 (443)
Q Consensus 360 ~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
+|..+..+ ++|+.|++++|++++ +| .+..+++|++|++++|.+++ ++ ..+..+++|++|++++|++++.+|.
T Consensus 85 l~~~~~~~-~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 85 IENLDAVA-DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp CSSHHHHH-HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ccchhhcC-CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 88766663 789999999999996 55 68899999999999999984 33 4789999999999999999888775
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=3.2e-12 Score=123.04 Aligned_cols=323 Identities=10% Similarity=0.026 Sum_probs=223.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++++.+..+ ++..-..+|.++++|+.+++..+ ++..-..+|.++++|+.+.+..+ +.......|.++..++....
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 46889998743 55444567899999999999765 55344567888999998887654 33344555666554444333
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
.... ......|.++.+|+.+.+.++... .....+.++.+|+.+.+..+.-.-....+..+..|+.+.+..+... +
T Consensus 148 ~~~~--~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~--i 222 (394)
T 4fs7_A 148 EGVT--VIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY--L 222 (394)
T ss_dssp TTCC--EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE--E
T ss_pred cccc--ccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE--e
Confidence 3322 233456888999999998765432 4455678889999998877622222266777888888877655432 2
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
........+|+.+.+.... + .+....+..+..++.+.+..+... .....+..+..++.+......+ ....|..+
T Consensus 223 ~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~ 296 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGC 296 (394)
T ss_dssp CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTC
T ss_pred ehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccccc
Confidence 3344456788888886542 2 455555667889999999877543 5566788889999888776543 23457889
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
.+|+.+.+..+ ++.... .+|.+|.+|+.+++.++ ++ .+....+..+.+|+.+++..+ ++..-...|.+|.
T Consensus 297 ~~L~~i~l~~~-i~~I~~------~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGE------EAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTCCEEEECTT-CCEECT------TTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred ccccccccccc-cceech------hhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 99999999754 554444 56899999999999754 66 455444444689999999877 6645567889999
Q ss_pred CCCeEeCcCCcCcccCchhhcCCCCCCEE
Q 040495 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLL 422 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 422 (443)
+|+.+++..+ +. .+..++.++++|+.+
T Consensus 367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999765 33 345578888888764
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=2e-14 Score=136.80 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=48.3
Q ss_pred CCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccC-----cCCCCCCEEecccCcCccc----cchhhh
Q 040495 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL-----SNASRLEMIEFSRNQFSGR----VSVDFS 311 (443)
Q Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~----~~~~~~ 311 (443)
++|++|++++|.++......+...+++|++|++++|.+++.....+ ...++|++|++++|.+++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3445555555544322222222223345555555555543222222 1234555555555555432 122234
Q ss_pred CCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 312 RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
.+++|++|++++|.+++.... .+...+..+++|++|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~--~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLE--LLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHH--HHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCCcCEEeCCCCCCCcHHHH--HHHHHHhcCCCcCeEECCCCCCC
Confidence 445555555555554432211 11133344445555555555544
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=2.3e-14 Score=136.32 Aligned_cols=189 Identities=15% Similarity=0.162 Sum_probs=124.4
Q ss_pred CCCCcEEEcccCcCcccCChhh----hcCCCCCcEEeCCCCcCCccCCccC-cCCCCCCEEecccCcCccccchhh----
Q 040495 240 ISSLEVISLSENRFTGSLPVDA----GVNLPNLRQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDF---- 310 (443)
Q Consensus 240 l~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~---- 310 (443)
.+.|++|++++|.++......+ ....++|++|++++|.+++.....+ ..+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578899999998874322222 2133689999999998875433333 235678999999998876544444
Q ss_pred -hCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccC----ChhHhhhccCCCEEeccCCcCeec-
Q 040495 311 -SRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL----PQSMANFSSTIKQIAMGRNRISGT- 384 (443)
Q Consensus 311 -~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----p~~~~~~~~~L~~L~L~~n~l~~~- 384 (443)
...++|+.|++++|.++..... .+...+..+++|++|++++|.+++.. +..+.. .++|+.|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVA--VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHH--HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCCCHHH
T ss_pred HhcCCccceeeCCCCCCChHHHH--HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCCCHHH
Confidence 2467899999999988764331 12245677888999999999887543 223333 36889999999988864
Q ss_pred ---CchhhhcCCCCCeEeCcCCcCcccCchhhcCC---C--CCCEEE--ccCCcCcc
Q 040495 385 ---IPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL---K--NLQLLD--LGGNFLQG 431 (443)
Q Consensus 385 ---~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l---~--~L~~L~--l~~n~l~~ 431 (443)
++..+...++|++|+|++|.++..-...+... . .|+.+. +..|.++.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 34455667889999999998886555544433 2 166666 66666653
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2e-12 Score=108.84 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=72.5
Q ss_pred CcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEcc
Q 040495 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322 (443)
Q Consensus 243 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
.+++++++|.++ .+|..+ .+++++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 356666666666 566543 3567777777777776666667777777777777777776666666777777777777
Q ss_pred CCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcc
Q 040495 323 INNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 358 (443)
+|.+++..+ ..+..+++|++|++++|++..
T Consensus 87 ~N~l~~~~~------~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPR------GAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCT------TTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCH------HHhcCCCCCCEEEeCCCCCCC
Confidence 777776655 446667777777777777763
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=3.3e-12 Score=107.92 Aligned_cols=104 Identities=20% Similarity=0.326 Sum_probs=76.1
Q ss_pred cEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccC
Q 040495 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGI 323 (443)
Q Consensus 244 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 323 (443)
+.++++++.++ .+|..+ .++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777775 666544 26777777777777766677777777888888888887776555667777888888888
Q ss_pred CCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 324 NNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
|.+++..+ ..+..+++|++|++++|++.
T Consensus 91 N~l~~l~~------~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPR------GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCT------TTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCH------HHhccccCCCEEEeCCCCcc
Confidence 87776655 45677778888888888776
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=2.2e-12 Score=108.61 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=80.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCC
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 156 (443)
+.++++++.++. +|..+ .++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 367777777765 45444 378888888888888777888888888888888888888666666778888888888888
Q ss_pred cccccCCccccCCcCccEeeeeccccCcc
Q 040495 157 YLVGEIPSAIGSLFKLERLFIFHNHITGQ 185 (443)
Q Consensus 157 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 185 (443)
++++..+..+..+++|++|++++|.++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88755555677788888888888877643
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=4.4e-12 Score=107.16 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=79.7
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCC
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 156 (443)
+.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46788888874 4555443 78888888888888777888888888888888888888655555678888888888888
Q ss_pred cccccCCccccCCcCccEeeeeccccC
Q 040495 157 YLVGEIPSAIGSLFKLERLFIFHNHIT 183 (443)
Q Consensus 157 ~l~~~~p~~l~~l~~L~~L~l~~n~l~ 183 (443)
++++..+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 887544445777888888888888776
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=3.2e-10 Score=108.98 Aligned_cols=315 Identities=10% Similarity=0.056 Sum_probs=181.1
Q ss_pred cccCCC-CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCC---CCCCCChhhhcCCCCceeeccCCcccccCCccccC
Q 040495 93 YVGNLS-FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS---FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGS 168 (443)
Q Consensus 93 ~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~---~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 168 (443)
+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..+. ++......|.++.+|+.+.+..+ ++......+..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 455554 4788877643 554456678888888888887653 44344566777788887776543 33244456777
Q ss_pred CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEE
Q 040495 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVIS 247 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 247 (443)
+.+|+.+.+..+. .......+..+..|+.+.+..+. .... ..+. ..+|+.+.+..+... .....+..+.+++...
T Consensus 136 c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~-~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSV-TAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTC-CEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEE
T ss_pred hccccccccccee-eeecccceeccccccccccccee-eEecccccc-ccceeEEEECCcccc-cccchhhhccccceec
Confidence 8888888886542 32444566777888888876542 2222 3333 356777777654322 2234566667777766
Q ss_pred cccCcCcccCChhhhc-------------CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCC
Q 040495 248 LSENRFTGSLPVDAGV-------------NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 248 l~~n~l~~~~~~~~~~-------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
....... .+....+. ....+..+.+... ++..-...|.++..|+.+.+..+.. ......|.+++
T Consensus 212 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~ 288 (394)
T 4gt6_A 212 SDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCP 288 (394)
T ss_dssp ECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCT
T ss_pred ccccccc-cccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCccccccc
Confidence 5544332 11111110 1123333433321 2223345677788888888765433 34455677888
Q ss_pred CCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCC
Q 040495 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHAN 394 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~ 394 (443)
.|+.+.+. +.++.... ..|.+|.+|+.+.+.++ ++ .+....+..+.+|+.+.+..+ ++..-...|.+|++
T Consensus 289 ~L~~i~l~-~~i~~I~~------~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPE------SVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TCCEEECC-TTCCEECT------TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred ccccccCC-CcccccCc------eeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 88888885 34444444 56788888888888754 54 444433333578888888654 55344567788888
Q ss_pred CCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcC
Q 040495 395 LNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFL 429 (443)
Q Consensus 395 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
|+.+++.++... -..+....+|+.+.+..|.+
T Consensus 359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 888888876543 13456677788877766544
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=9.4e-10 Score=105.71 Aligned_cols=309 Identities=11% Similarity=0.102 Sum_probs=196.8
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCc---CCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceee
Q 040495 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNG---FLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELS 152 (443)
Q Consensus 76 v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 152 (443)
++.+.+... ++..-..+|.++++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ ++......|.++.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 556666532 333334578899999999998763 44334567888999998888654 4435566788899999999
Q ss_pred ccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCC
Q 040495 153 VDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 153 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
+..+. .......+..+.+|+.+.+..+ ++..-...+. ...|+.+.+..+........+..+..++............
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred cccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccccccc
Confidence 97543 3244566788899999988765 3323333443 4678888887654333335666677777776654433211
Q ss_pred CCc-------------cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 233 IPP-------------PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 233 ~~~-------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
.-. .+.....+..+.+.+. ++ .+....+..+..|+.+.+..+... .-...|.+++.|+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~- 296 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS- 296 (394)
T ss_dssp SSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-
T ss_pred cceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCcccccccccccccCC-
Confidence 000 0111223344444322 22 344455667888999998765433 455678889999999996
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCC
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n 379 (443)
+.++......|.++.+|+.+++..+ ++.... .+|.+|.+|+.+.+..+ ++ .+....+..+++|+.+++.++
T Consensus 297 ~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~------~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 297 SRITELPESVFAGCISLKSIDIPEG-ITQILD------DAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred CcccccCceeecCCCCcCEEEeCCc-ccEehH------hHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence 4566566677999999999999754 554444 67899999999999755 66 565554444689999999988
Q ss_pred cCeecCchhhhcCCCCCeEeCcCCcC
Q 040495 380 RISGTIPPGIRSHANLNWLTMDSNLF 405 (443)
Q Consensus 380 ~l~~~~p~~l~~~~~L~~L~L~~n~~ 405 (443)
.... ..+..+.+|+.+.+..+.+
T Consensus 368 ~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 368 RSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp HHHH---HTCBCCCCC----------
T ss_pred eeeh---hhhhccCCCCEEEeCCCCE
Confidence 6442 4567788899888876654
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.6e-10 Score=109.11 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=82.9
Q ss_pred EcCCC-CCcccccccccCCCCCCEEeCCC-CcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCc
Q 040495 80 DLRNQ-SIGGPLSPYVGNLSFLRYINLAN-NGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157 (443)
Q Consensus 80 ~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 157 (443)
+.+++ ++++ +|. +..+++|++|+|++ |.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|+|++|+
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 33444 5554 677 88899999999996 99987777889999999999999999998888889999999999999999
Q ss_pred ccccCCccccCCcCccEeeeeccccCc
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITG 184 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~ 184 (443)
+++..+..+..++ |+.|++.+|.+..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9854444455444 9999999988863
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.12 E-value=1.2e-10 Score=109.91 Aligned_cols=158 Identities=17% Similarity=0.236 Sum_probs=100.9
Q ss_pred CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhh--CCCCCCEEEccC--CCCcccC-CCchhhHh
Q 040495 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS--RLKNLSFLNMGI--NNLGTRT-ANELDFIN 338 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~~-~~~~~~~~ 338 (443)
.+|+|+.|.+++|.-. .++. +. .++|+.|++..+.+.......+. .+|+|+.|+|+. |...+.. ...+. .
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~--~ 244 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR--P 244 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG--G
T ss_pred cCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH--H
Confidence 6778888888766211 2222 32 67888888888877655444443 678888888753 2222211 10111 1
Q ss_pred hh--cCCCCCCEEEccCCcCcccCChhHhh--hccCCCEEeccCCcCeec----CchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 339 LL--ANCSKLERLYFNRNRFQGVLPQSMAN--FSSTIKQIAMGRNRISGT----IPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 339 ~~--~~~~~L~~L~l~~n~l~~~~p~~~~~--~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
.+ ..+++|++|++.+|.+.+..+..+.. ..++|+.|+|+.|.+++. ++..+..+++|+.|++++|.++...-
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 12 35788999999988887655554443 247899999999988875 33444567889999999998875544
Q ss_pred hhhcC-CCCCCEEEccCCc
Q 040495 411 PVIGE-LKNLQLLDLGGNF 428 (443)
Q Consensus 411 ~~~~~-l~~L~~L~l~~n~ 428 (443)
+.+.. + ...+++++++
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 44443 2 4568888776
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=2.5e-10 Score=107.73 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=62.9
Q ss_pred EEEcccc-cCCCCCCccccCCCCCcEEEccc-CcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecc
Q 040495 221 LLDIAFN-HFSGMIPPPIFNISSLEVISLSE-NRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 221 ~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
.++++++ .++ .+|. +..+++|++|+|++ |.++ .+|...+..+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3566665 555 3555 66666666666664 6665 3443333356666666666666666666666666666666666
Q ss_pred cCcCccccchhhhCCCCCCEEEccCCCCccc
Q 040495 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 329 (443)
+|++++..+..+..++ |+.|++.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 6666655444444444 66666666666543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=1.1e-07 Score=90.67 Aligned_cols=301 Identities=9% Similarity=0.022 Sum_probs=145.6
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
...+|+.+.+.. .++..-..+|.++.+|+.+++..+ ++......|.++ +|+.+.+..+ ++......|.. .+|+.+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDF 118 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccc
Confidence 344555555543 233233445566666666666433 332333444443 4555544322 22122222332 255555
Q ss_pred eeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCC------------CCCCccccCCCCC
Q 040495 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFS------------GMIPPPIFNISSL 243 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~l~~l~~L 243 (443)
.+..+... .....+.+ .+++.+.+..+.-.-....+..+.+++...+..+... ......+.....+
T Consensus 119 ~lp~~~~~-i~~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 119 EFPGATTE-IGNYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp ECCTTCCE-ECTTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred cCCCcccc-cccccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 55443211 11122222 2344444332211111133344444554444332211 0111223333444
Q ss_pred cEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccC
Q 040495 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGI 323 (443)
Q Consensus 244 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 323 (443)
..+.+..... .+....+....+++.+.+..+ +.......+..+..|+.+.+..+ ++......|..+.+|+.+.+..
T Consensus 197 ~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 197 TEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp SEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred ccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence 5554433321 222223335566777766544 22233455667777777777654 4545555677777777777754
Q ss_pred CCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCC
Q 040495 324 NNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSN 403 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n 403 (443)
+ +..... ..|.+|.+|+.+.+.++.++ .++...+.-+.+|+.+.|..+ ++..-..+|.+|++|+.+.+..+
T Consensus 273 ~-i~~i~~------~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 273 K-VKTVPY------LLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp C-CSEECT------TTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred c-ceeccc------cccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 3 333333 45777778888887777776 444443333577788777644 44334456777778887777544
Q ss_pred cCcccCchhhcCCC
Q 040495 404 LFTGTIPPVIGELK 417 (443)
Q Consensus 404 ~~~~~~p~~~~~l~ 417 (443)
++..-..+|.++.
T Consensus 344 -v~~I~~~aF~~c~ 356 (379)
T 4h09_A 344 -ITLIESGAFEGSS 356 (379)
T ss_dssp -CCEECTTTTTTSS
T ss_pred -cCEEchhHhhCCC
Confidence 4312233455543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=3.2e-10 Score=106.91 Aligned_cols=142 Identities=11% Similarity=0.151 Sum_probs=99.9
Q ss_pred CCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhh--cCCCCCCEEEccC--CcCc
Q 040495 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL--ANCSKLERLYFNR--NRFQ 357 (443)
Q Consensus 282 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~--n~l~ 357 (443)
+...+..+++|+.|++++|.-. .++. + .+++|+.|++..+.+..... ..+ ..+++|++|+|+. |...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l------~~l~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV------EDILGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH------HHHHHSBCTTCCEEEEECBCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH------HHHHHccCCCCcEEEEeccccccc
Confidence 4455677899999999987311 2233 3 38899999999887765433 333 3789999999863 2211
Q ss_pred cc-----CChhHh-hhccCCCEEeccCCcCeecCchhhh---cCCCCCeEeCcCCcCccc----CchhhcCCCCCCEEEc
Q 040495 358 GV-----LPQSMA-NFSSTIKQIAMGRNRISGTIPPGIR---SHANLNWLTMDSNLFTGT----IPPVIGELKNLQLLDL 424 (443)
Q Consensus 358 ~~-----~p~~~~-~~~~~L~~L~L~~n~l~~~~p~~l~---~~~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~l 424 (443)
+. +...+. ..+++|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+++. ++..+..+++|+.|++
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 11 111111 1258999999999999876555554 477899999999999864 3444456799999999
Q ss_pred cCCcCccc
Q 040495 425 GGNFLQGS 432 (443)
Q Consensus 425 ~~n~l~~~ 432 (443)
++|.++..
T Consensus 315 ~~n~i~d~ 322 (362)
T 2ra8_A 315 KYNYLSDE 322 (362)
T ss_dssp CSBBCCHH
T ss_pred CCCcCCHH
Confidence 99998754
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.96 E-value=2e-07 Score=88.78 Aligned_cols=291 Identities=13% Similarity=0.107 Sum_probs=188.8
Q ss_pred hcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCC
Q 040495 118 IGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLL 197 (443)
Q Consensus 118 l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 197 (443)
+....+|+.+.+.. .++.....+|.++.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +.......+.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 45667888888865 355455677899999999999754 553445567766 6788777544 33233334444 4799
Q ss_pred EEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCC-----------hhhhcCCC
Q 040495 198 AFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLP-----------VDAGVNLP 266 (443)
Q Consensus 198 ~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----------~~~~~~~~ 266 (443)
.+.+..+........+.. .+++.+.+..+ +...-...+..+..++...+..+....... ...+....
T Consensus 117 ~i~lp~~~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 117 DFEFPGATTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp EEECCTTCCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred cccCCCcccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 998876532221233333 35666655433 222233456677788887776543321000 00111334
Q ss_pred CCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCC
Q 040495 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKL 346 (443)
Q Consensus 267 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L 346 (443)
.+..+.+....- ......+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.... ..+.++.+|
T Consensus 195 ~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~------~aF~~~~~l 265 (379)
T 4h09_A 195 TGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS------FLLQNCTAL 265 (379)
T ss_dssp CCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT------TTTTTCTTC
T ss_pred ccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc------cccceeehh
Confidence 455555544322 234456677888999888654 44455667889999999999765 554444 568899999
Q ss_pred CEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccC
Q 040495 347 ERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGG 426 (443)
Q Consensus 347 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~ 426 (443)
+.+.+..+ ++ .++...+..+++|+.+.+.++.++..-...|.+|.+|+.+.|..+ ++..-..+|.++++|+.+.+..
T Consensus 266 ~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 266 KTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 99999754 55 455555554689999999999888556678999999999999765 5522345788999999999865
Q ss_pred C
Q 040495 427 N 427 (443)
Q Consensus 427 n 427 (443)
+
T Consensus 343 ~ 343 (379)
T 4h09_A 343 S 343 (379)
T ss_dssp T
T ss_pred c
Confidence 4
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.86 E-value=2e-09 Score=91.68 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=65.6
Q ss_pred hhCCCCCCEEEccCC-CCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhh---ccCCCEEeccCCcCeec-
Q 040495 310 FSRLKNLSFLNMGIN-NLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANF---SSTIKQIAMGRNRISGT- 384 (443)
Q Consensus 310 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~---~~~L~~L~L~~n~l~~~- 384 (443)
+...+.|+.|++++| .++...... +...+...++|++|+|++|.+.+.....+... .++|+.|+|++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~--l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKA--CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHH--HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHH--HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 344455555555555 444332211 11344555666666666666654322222211 24566677776666654
Q ss_pred ---CchhhhcCCCCCeEeC--cCCcCccc----CchhhcCCCCCCEEEccCCcCc
Q 040495 385 ---IPPGIRSHANLNWLTM--DSNLFTGT----IPPVIGELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 385 ---~p~~l~~~~~L~~L~L--~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
+...+...++|++|+| ++|.++.. +.+.+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566667777777 66777643 3344555677777777777764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=1.1e-08 Score=87.16 Aligned_cols=119 Identities=9% Similarity=0.077 Sum_probs=63.2
Q ss_pred CcCCCCCCEEecccC-cCccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccC
Q 040495 286 LSNASRLEMIEFSRN-QFSGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360 (443)
Q Consensus 286 l~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 360 (443)
+...+.|++|++++| .+... +...+...++|++|++++|.++...... +...+...++|++|+|++|.+++..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~--l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA--LAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH--HHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHH--HHHHHHhCCCcCEEECcCCcCCHHH
Confidence 344455555555555 44432 1222344555666666666555432211 1134455566667777766666432
Q ss_pred ChhHhhh---ccCCCEEec--cCCcCeec----CchhhhcCCCCCeEeCcCCcCc
Q 040495 361 PQSMANF---SSTIKQIAM--GRNRISGT----IPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 361 p~~~~~~---~~~L~~L~L--~~n~l~~~----~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
...+... .++|+.|+| ++|.+.+. +...+...++|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2222111 246777777 66766654 3344556677888888888775
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=2.3e-09 Score=95.99 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=14.5
Q ss_pred CCCccceeeCCCCCcEEEEEc
Q 040495 61 LCQWTGVTCGRRHQRVTRLDL 81 (443)
Q Consensus 61 ~c~w~gv~c~~~~~~v~~L~l 81 (443)
.|.|.|+.|+....+|..+-.
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEE
T ss_pred HHhcCcEEECCCCCEEEEEEe
Confidence 578999999876556644433
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=7.9e-07 Score=79.52 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=41.0
Q ss_pred CCCCCCEEEccCCcCcc--cCChhHhhhccCCCEEeccCCcCeecCchhhhcCC--CCCeEeCcCCcCcccCc-------
Q 040495 342 NCSKLERLYFNRNRFQG--VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA--NLNWLTMDSNLFTGTIP------- 410 (443)
Q Consensus 342 ~~~~L~~L~l~~n~l~~--~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~--~L~~L~L~~n~~~~~~p------- 410 (443)
++++|+.|+|++|++++ .+|..+.. +++|+.|+|++|++++. ..+..+. +|+.|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 34455555555555553 23333333 25566666666665543 1222222 66666666666665544
Q ss_pred hhhcCCCCCCEEE
Q 040495 411 PVIGELKNLQLLD 423 (443)
Q Consensus 411 ~~~~~l~~L~~L~ 423 (443)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2345566676665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1.1e-06 Score=72.91 Aligned_cols=84 Identities=5% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCc-CcccCChhHhhh---ccCCCEEeccCCc-CeecCchhh
Q 040495 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNR-FQGVLPQSMANF---SSTIKQIAMGRNR-ISGTIPPGI 389 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~---~~~L~~L~L~~n~-l~~~~p~~l 389 (443)
+|+.||++++.++.... ..+.+|++|++|+|++|. +++..-..+... +++|+.|+|++|. +++..-..+
T Consensus 62 ~L~~LDLs~~~Itd~GL------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CEEEEEEESCCCCGGGG------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred eEeEEeCcCCCccHHHH------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 45555555555444332 334566666666666663 554333333331 2457777777764 666544556
Q ss_pred hcCCCCCeEeCcCCc
Q 040495 390 RSHANLNWLTMDSNL 404 (443)
Q Consensus 390 ~~~~~L~~L~L~~n~ 404 (443)
..+++|++|++++|.
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 677777777777774
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.7e-06 Score=71.83 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=50.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCc-CCCCCchhhcCC----CccCeEEccCCC-CCCCCChhhhcCCC
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNG-FLGEIPPQIGRL----NMLEGLVLSNNS-FSGTIPTNLSRRSN 147 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~p~~l~~l~~ 147 (443)
-++++||++++.+++.--..+..+++|++|+|++|. +++.--..++.+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777665544556667777777777763 554444445553 356677776653 55443344555666
Q ss_pred CceeeccCCc
Q 040495 148 LIELSVDTNY 157 (443)
Q Consensus 148 L~~L~l~~n~ 157 (443)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.02 E-value=5.7e-06 Score=70.01 Aligned_cols=91 Identities=9% Similarity=0.133 Sum_probs=42.2
Q ss_pred hhcCCCCCCEEEccCCcCcccCChhHhh---hccCCCEEeccCCcCeec----CchhhhcCCCCCeEeCcCC---cCcc-
Q 040495 339 LLANCSKLERLYFNRNRFQGVLPQSMAN---FSSTIKQIAMGRNRISGT----IPPGIRSHANLNWLTMDSN---LFTG- 407 (443)
Q Consensus 339 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~---~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~n---~~~~- 407 (443)
.+.....|+.|+|++|++.+..-..+.. .-+.|+.|+|++|.|.+. +-+.+...+.|++|+|++| .+..
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 3444445555555555554322222211 024455555555555543 2233444455666666543 2332
Q ss_pred ---cCchhhcCCCCCCEEEccCCcC
Q 040495 408 ---TIPPVIGELKNLQLLDLGGNFL 429 (443)
Q Consensus 408 ---~~p~~~~~l~~L~~L~l~~n~l 429 (443)
.+.+.+...+.|++|+++.|..
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1334444556666666665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.83 E-value=2e-05 Score=66.63 Aligned_cols=117 Identities=11% Similarity=0.139 Sum_probs=63.4
Q ss_pred CCCCCCEEecccC-cCccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh
Q 040495 288 NASRLEMIEFSRN-QFSGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 288 ~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (443)
+-+.|++|++++| ++... +...+..-+.|+.|+|++|.+++.....+. ..+.....|++|+|+.|.|++..-.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA--~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI--ELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH--HHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH--HHHhcCCccCeEecCCCcCCHHHHH
Confidence 3445555555553 44321 223344455666666666666554332222 4555666777777777777644333
Q ss_pred hHhhh---ccCCCEEeccCC---cCeec----CchhhhcCCCCCeEeCcCCcCc
Q 040495 363 SMANF---SSTIKQIAMGRN---RISGT----IPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 363 ~~~~~---~~~L~~L~L~~n---~l~~~----~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
.+... .+.|+.|+|++| .+... +...+...+.|++|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 33221 245777777654 33322 3445666777888888777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.47 E-value=0.0043 Score=48.70 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=31.8
Q ss_pred CEEEccCCCCc-ccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCe
Q 040495 317 SFLNMGINNLG-TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRIS 382 (443)
Q Consensus 317 ~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~ 382 (443)
..++.+++.++ ...|.. -..+|++|+|++|+|+ .+|...+...++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~--------lp~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA--------FPVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC--------CCTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC--------CCcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 35666666665 122211 1135677777777776 555544433456777777766654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.44 E-value=0.0039 Score=48.96 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=44.4
Q ss_pred CEEEccCCcCc-ccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc
Q 040495 347 ERLYFNRNRFQ-GVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 347 ~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
+.++.+++.++ ..+|..+ +++++.|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 4677543 467999999999999544556788889999999999775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.56 E-value=64 Score=23.16 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=17.2
Q ss_pred hhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc
Q 040495 116 PQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154 (443)
Q Consensus 116 ~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 154 (443)
.+|.++++|+.+.+-.+ ++..-...|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34445555555555432 222333444455555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.55 E-value=42 Score=24.15 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=4.9
Q ss_pred hcCCCCCCEEEc
Q 040495 340 LANCSKLERLYF 351 (443)
Q Consensus 340 ~~~~~~L~~L~l 351 (443)
|.+|.+|+.+.+
T Consensus 39 F~~C~~L~~i~~ 50 (100)
T 2lz0_A 39 FSGCTALEKLIL 50 (100)
T ss_dssp STTCTTCCCEEE
T ss_pred HhccCCccEEEE
Confidence 334444444443
Done!