BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040496
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 224 bits (571), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 100/124 (80%), Positives = 109/124 (87%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 27 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 87 SLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
Query: 121 YAMG 124
YAMG
Sbjct: 147 YAMG 150
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 221 bits (563), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 101/123 (82%), Positives = 110/123 (89%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +D+FHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF TK++HPNINSNGSI
Sbjct: 30 PVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSI 89
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IAH+YKSDK KY AR WTQK
Sbjct: 90 CLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQK 149
Query: 121 YAM 123
YAM
Sbjct: 150 YAM 152
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 219 bits (558), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/123 (81%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 27 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 87 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
Query: 121 YAM 123
YAM
Sbjct: 147 YAM 149
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 219 bits (558), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/123 (81%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 30 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 89
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 90 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 149
Query: 121 YAM 123
YAM
Sbjct: 150 YAM 152
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 219 bits (558), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 97/123 (78%), Positives = 114/123 (92%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +D+FHWQATIMGP DSPYAGGVF ++IHFP DYPFKPPKV F T+++HPNINSNGSI
Sbjct: 25 PVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSI 84
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL++QWSPALTISKVLLSI SLLTDPNPDDPLVPEIAH+YK+D+++YE +AR WT+K
Sbjct: 85 CLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRK 144
Query: 121 YAM 123
YA+
Sbjct: 145 YAI 147
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 219 bits (558), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/123 (81%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 27 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 87 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
Query: 121 YAM 123
YAM
Sbjct: 147 YAM 149
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 219 bits (558), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/123 (81%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 43 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 103 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
Query: 121 YAM 123
YAM
Sbjct: 163 YAM 165
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 219 bits (557), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 100/123 (81%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 85 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 144
Query: 121 YAM 123
YAM
Sbjct: 145 YAM 147
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 218 bits (556), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 110/123 (89%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +D+FHWQATIMGPP+SPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 28 PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ +Y AR WTQK
Sbjct: 88 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQK 147
Query: 121 YAM 123
YAM
Sbjct: 148 YAM 150
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 218 bits (555), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 99/123 (80%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 35 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +Y++D+ KY AR WTQK
Sbjct: 95 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQK 154
Query: 121 YAM 123
YAM
Sbjct: 155 YAM 157
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 218 bits (555), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 99/123 (80%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 35 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY +R WTQK
Sbjct: 95 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 154
Query: 121 YAM 123
YAM
Sbjct: 155 YAM 157
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 218 bits (555), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 99/123 (80%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 27 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY +R WTQK
Sbjct: 87 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 146
Query: 121 YAM 123
YAM
Sbjct: 147 YAM 149
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 218 bits (554), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 96/123 (78%), Positives = 115/123 (93%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +D++HWQA+IMGP DSPYAGGVF ++IHFP DYPFKPPK++F TK++HPNIN+NG+I
Sbjct: 26 PVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNI 85
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIAH+YK+D+ KYEATAR WT+K
Sbjct: 86 CLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKK 145
Query: 121 YAM 123
YA+
Sbjct: 146 YAV 148
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 218 bits (554), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 99/123 (80%), Positives = 108/123 (87%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 27 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QW PALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 87 CLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
Query: 121 YAM 123
YAM
Sbjct: 147 YAM 149
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 218 bits (554), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 99/123 (80%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 24 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY +R WTQK
Sbjct: 84 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 143
Query: 121 YAM 123
YAM
Sbjct: 144 YAM 146
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 217 bits (553), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +D+FHWQATIMGPPDS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSI
Sbjct: 27 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY AR WTQK
Sbjct: 87 CLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 146
Query: 121 YAM 123
YAM
Sbjct: 147 YAM 149
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 217 bits (552), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +D+FHWQATIMGPPDS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSI
Sbjct: 31 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY AR WTQK
Sbjct: 91 CLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 150
Query: 121 YAM 123
YAM
Sbjct: 151 YAM 153
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 217 bits (552), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 99/123 (80%), Positives = 108/123 (87%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 27 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLD L+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 87 CLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
Query: 121 YAM 123
YAM
Sbjct: 147 YAM 149
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 217 bits (552), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 99/123 (80%), Positives = 108/123 (87%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQAT MGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 27 PVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 87 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
Query: 121 YAM 123
YAM
Sbjct: 147 YAM 149
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 217 bits (552), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 99/123 (80%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 33 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 92
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY +R WTQK
Sbjct: 93 CLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 152
Query: 121 YAM 123
YAM
Sbjct: 153 YAM 155
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 217 bits (552), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 109/123 (88%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +D+FHWQATIMGPPDS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSI
Sbjct: 43 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 102
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY AR WTQK
Sbjct: 103 CLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 162
Query: 121 YAM 123
YAM
Sbjct: 163 YAM 165
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 216 bits (551), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/122 (80%), Positives = 110/122 (90%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY+GGVF + IHFP DYPFKPPKV F TK++HPNINS G+I
Sbjct: 45 PVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAI 104
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK+QWSPALTISKVLLSI SLLTDPNPDDPLVPEIAH+YKSD+ +Y+ TAR W+QK
Sbjct: 105 CLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQK 164
Query: 121 YA 122
YA
Sbjct: 165 YA 166
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 215 bits (548), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 99/123 (80%), Positives = 108/123 (87%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 28 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 88 SLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 147
Query: 121 YAM 123
YAM
Sbjct: 148 YAM 150
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 215 bits (547), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 99/123 (80%), Positives = 108/123 (87%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 43 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 103 XLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
Query: 121 YAM 123
YAM
Sbjct: 163 YAM 165
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 214 bits (545), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 108/123 (87%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY +R WTQK
Sbjct: 85 SLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 144
Query: 121 YAM 123
YAM
Sbjct: 145 YAM 147
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 213 bits (543), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 107/123 (86%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSI
Sbjct: 24 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
LDIL+ QWSPAL ISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 84 SLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 143
Query: 121 YAM 123
YAM
Sbjct: 144 YAM 146
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 213 bits (541), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 97/123 (78%), Positives = 108/123 (87%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +D+FHWQATIMGPPDS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSI
Sbjct: 31 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
LDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY AR WTQK
Sbjct: 91 KLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 150
Query: 121 YAM 123
YAM
Sbjct: 151 YAM 153
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 212 bits (540), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 107/123 (86%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HP INSNGSI
Sbjct: 25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSI 84
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY AR WTQK
Sbjct: 85 SLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 144
Query: 121 YAM 123
YAM
Sbjct: 145 YAM 147
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 184 bits (468), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 101/122 (82%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV +D+FHW ATI GP DSPY GG+F + +HFP DYPFK P+V F TKV+HPNIN NG I
Sbjct: 28 PVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVI 87
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK+QWSPALT+S+VLLSI SLLTDPNP DPL PE+A++ +++K ++E TAR WT+
Sbjct: 88 CLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRM 147
Query: 121 YA 122
YA
Sbjct: 148 YA 149
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 172 bits (435), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 77/122 (63%), Positives = 97/122 (79%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P ++++ W++TI+GPP S Y GGVF + I F PDYPFKPPKV FRT+++H NINS G I
Sbjct: 27 PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK+ WSPALTISKVLLSICSLLTD NP DPLV IA Y +++A+++ AR WT++
Sbjct: 87 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 146
Query: 121 YA 122
YA
Sbjct: 147 YA 148
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 172 bits (435), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 97/122 (79%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P ++++ W++TI+GPP S Y GGVF + I F P+YPFKPPKV FRT+++H NINS G I
Sbjct: 72 PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVI 131
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK+ WSPALTISKVLLSICSLLTD NP DPLV IA Y +++A+++ AR WT++
Sbjct: 132 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 191
Query: 121 YA 122
YA
Sbjct: 192 YA 193
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLD 63
+ F W I GP +PY GG F + I P DYP+ PPK+ F TK++HPNI+S G+ICLD
Sbjct: 51 NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLD 110
Query: 64 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123
+LK +WSPALTI LLSI +LL+DP PDDP E+A MYK + A + TA WT+ +A
Sbjct: 111 VLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFAT 170
Query: 124 G 124
G
Sbjct: 171 G 171
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 135 bits (339), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 85/124 (68%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P + ++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ G I
Sbjct: 29 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 88
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++A +K+++A+ TAR+WT+
Sbjct: 89 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRL 148
Query: 121 YAMG 124
YAM
Sbjct: 149 YAMN 152
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 135 bits (339), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 85/124 (68%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P + ++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ G I
Sbjct: 30 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 89
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++A +K+++A+ TAR+WT+
Sbjct: 90 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRL 149
Query: 121 YAMG 124
YAM
Sbjct: 150 YAMN 153
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 135 bits (339), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 85/124 (68%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P + ++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ G I
Sbjct: 27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++A +K+++A+ TAR+WT+
Sbjct: 87 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRL 146
Query: 121 YAMG 124
YAM
Sbjct: 147 YAMN 150
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 134 bits (338), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 85/124 (68%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P + ++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ G I
Sbjct: 25 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 84
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++A +K+++A+ TAR+WT+
Sbjct: 85 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRL 144
Query: 121 YAMG 124
YAM
Sbjct: 145 YAMN 148
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 134 bits (338), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 85/123 (69%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P + ++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ G I
Sbjct: 32 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 91
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++A +K+++A+ TAR+WT+
Sbjct: 92 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRL 151
Query: 121 YAM 123
YAM
Sbjct: 152 YAM 154
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 80/122 (65%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV E+ H+ I GP +PY GG + + + P YP +PPKV F TK++HPNI+ G I
Sbjct: 25 PVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRI 84
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK++WSPAL I VLLSI +LL+ P PDDPL ++A +K DK E AR W +
Sbjct: 85 CLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKI 144
Query: 121 YA 122
YA
Sbjct: 145 YA 146
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 80/122 (65%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
PV E+ H+ I GP +PY GG + + + P YP +PPKV F TK++HPNI+ G I
Sbjct: 25 PVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRI 84
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK++WSPAL I VLLSI +LL+ P PDDPL ++A +K DK E AR W +
Sbjct: 85 CLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKI 144
Query: 121 YA 122
YA
Sbjct: 145 YA 146
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLD 63
D+ H + T +GPP +PY GG F+V I P +YPFKPPK+ F TKV+HPNI+S G+ICLD
Sbjct: 31 DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLD 90
Query: 64 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
IL+ WSP +T+ L+S+ +LL P P+DP E+A Y D+ + TA WT+ YA
Sbjct: 91 ILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLD 63
D+ H + T +GPP +PY GG F+V I P +YPFKPPK+ F TKV+HPNI+S G+ICLD
Sbjct: 30 DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLD 89
Query: 64 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
ILK WSP +T+ L+S+ +LL P P+DP E+A Y D+ + TA WT+ YA
Sbjct: 90 ILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 82/122 (67%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P +++ ++Q TI GP SPY G+F + ++ P DYP + PKV F TK++HPNI+ G I
Sbjct: 29 PHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRI 88
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLD+LK WSPAL I VLLSI +LL PNP+DPL ++A + ++ +A AR WT+
Sbjct: 89 CLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 148
Query: 121 YA 122
YA
Sbjct: 149 YA 150
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 82/122 (67%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P +++ ++Q TI GP SPY G+F + ++ P DYP + PKV F TK++HPNI+ G I
Sbjct: 27 PHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLD+LK WSPAL I VLLSI +LL PNP+DPL ++A + ++ +A AR WT+
Sbjct: 87 CLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 146
Query: 121 YA 122
YA
Sbjct: 147 YA 148
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
Query: 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSI 60
V D+ W+ I GP +PY GG F + I PPDYP+ PPK+ F TK++HPNI+S G+I
Sbjct: 70 VGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAI 129
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK +WSPALTI LLSI ++L DP P DP E+A M + + TA+ WT+
Sbjct: 130 CLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTET 189
Query: 121 YA 122
+A
Sbjct: 190 FA 191
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 81/122 (66%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P +++ ++Q TI GP SPY G+F + ++ P DYP + PKV F TK++HPNI+ G I
Sbjct: 27 PHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
LD+LK WSPAL I VLLSI +LL PNP+DPL ++A + ++ +A AR WT+
Sbjct: 87 SLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 146
Query: 121 YA 122
YA
Sbjct: 147 YA 148
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 76/123 (61%), Gaps = 5/123 (4%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P ++ W A I GP D+P+ GG F +++ F DYP KPP V F +++FHPNI ++GSI
Sbjct: 28 PQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSI 87
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR----- 115
CLDIL+ QWSP ++ +L SI SLL DPNP+ P E A MY K +Y R
Sbjct: 88 CLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQ 147
Query: 116 SWT 118
SWT
Sbjct: 148 SWT 150
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 121 bits (304), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 80/122 (65%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P +++ ++Q TI GP SPY G+F + ++ P DYP + PKV F TK++HP I+ G I
Sbjct: 27 PHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRI 86
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
LD+LK WSPAL I VLLSI +LL PNP+DPL ++A + ++ +A AR WT+
Sbjct: 87 SLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 146
Query: 121 YA 122
YA
Sbjct: 147 YA 148
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 72/111 (64%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P ++ W A I GP +P+ G F + I F +YP KPP V F +K+FHPN+ ++GSI
Sbjct: 28 PSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSI 87
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 111
CLDIL+ +WSP +S +L SI SLL +PNP+ P + A +Y+ +K +YE
Sbjct: 88 CLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 81/123 (65%), Gaps = 4/123 (3%)
Query: 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 63
+ M +A I+G ++PY GVF + + P YPF+PP++ F T ++HPNI+S G ICLD
Sbjct: 31 DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLD 90
Query: 64 IL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQ 119
+L K W P+L I+ VL SI L+++PNPDDPL+ +I+ +K +K + AR WT+
Sbjct: 91 VLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTE 150
Query: 120 KYA 122
K+A
Sbjct: 151 KHA 153
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 78/120 (65%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P +++ W+A I GP ++P+ G F +++ F +YP KPP V F +K+FHPN+ ++GSI
Sbjct: 28 PTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSI 87
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ +WSP ++ +L SI SLL +PNP+ P A +Y+ ++ +YE + ++
Sbjct: 88 CLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 78/120 (65%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P +++ W+A I GP ++P+ G F +++ F +YP KPP V F +K+FHPN+ ++GSI
Sbjct: 31 PTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSI 90
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDIL+ +WSP ++ +L SI SLL +PNP+ P A +Y+ ++ +YE + ++
Sbjct: 91 CLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 150
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 5/122 (4%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P+ +++ W A I+GP D+PY G F + + F +YP KPP V F +++FHPN+ +NG I
Sbjct: 28 PLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEI 87
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATAR 115
CLDIL+ +W+P ++ +L SI SL DPNP P E A ++K K++Y E +
Sbjct: 88 CLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147
Query: 116 SW 117
SW
Sbjct: 148 SW 149
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ WQ I+ P + PY G F + I+FP +YPFKPPK+ F+TK++HPNI+ G +CL +
Sbjct: 33 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 91
Query: 65 LK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
+ E W PA +V+ S+ +L+ DP P+ PL ++A Y D+ K+ A +T+KY
Sbjct: 92 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ WQ I+ P + PY G F + I+FP +YPFKPPK+ F+TK++HPNI+ G +CL +
Sbjct: 31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 89
Query: 65 LK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
+ E W PA +V+ S+ +L+ DP P+ PL ++A Y D+ K+ A +T+KY
Sbjct: 90 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSI 60
V E+ + I GPPD+PY GG + + I P YPF PPKV F TK++HPNI+S G+I
Sbjct: 49 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 108
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK+QW+ A+T+ VLLS+ +LL PDDP +A+ YK + ++ TAR W
Sbjct: 109 CLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 168
Query: 121 YA 122
YA
Sbjct: 169 YA 170
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSI 60
V E+ + I GPPD+PY GG + + I P YPF PPKV F TK++HPNI+S G+I
Sbjct: 85 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK+QW+ A+T+ VLLS+ +LL PDDP +A+ YK + ++ TAR W
Sbjct: 145 CLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 204
Query: 121 YA 122
YA
Sbjct: 205 YA 206
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSI 60
V E+ + I GPPD+PY GG + + I P YPF PPKV F TK++HPNI+S G+I
Sbjct: 34 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK+QW+ A+T+ VLLS+ +LL PDDP +A+ YK + ++ TAR W
Sbjct: 94 CLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 153
Query: 121 YA 122
YA
Sbjct: 154 YA 155
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSI 60
V E+ + I GPPD+PY GG + + I P YPF PPKV F TK++HPNI+S G+I
Sbjct: 33 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK+QW+ A+T+ VLLS+ +LL PDDP +A+ YK + ++ TAR W
Sbjct: 93 CLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 152
Query: 121 YA 122
YA
Sbjct: 153 YA 154
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSI 60
V E+ + I GPPD+PY GG + + I P YPF PPKV F TK++HPNI+S G+I
Sbjct: 36 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
CLDILK+QW+ A+T+ VLLS+ +LL PDDP +A+ YK + ++ TAR W
Sbjct: 96 CLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 155
Query: 121 YA 122
YA
Sbjct: 156 YA 157
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P ED+ Q TI GP +PYAGG+F + + D+P PPK F TK+FHPN+ +NG I
Sbjct: 37 PNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEI 96
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120
C+++LK W+ L I VLL+I LL PNP+ L E + + +Y A AR T+
Sbjct: 97 CVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEI 156
Query: 121 YA 122
+
Sbjct: 157 HG 158
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 105 bits (261), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
D+ +W+ I G P + + GG++ +T+ FP +YP +PPK F +FHPN+ +G++CL I
Sbjct: 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 102
Query: 65 LKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L E+ W PA+TI ++LL I LL DPN P E M+K DK +YE R+ ++ A
Sbjct: 103 LNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P +++F W AT+ GP D+ Y + +T+ FP DYP+KPP V F T +HPN++ +G+I
Sbjct: 33 PDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNI 92
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 111
CLDILKE W+ + + +LLS+ SLL +PN PL + A M+ S++ +Y+
Sbjct: 93 CLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYK 142
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 13/116 (11%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
D++ W+ I+GPPD+ Y GGVF + FP DYP +PPK+ F T+++HPN++ NG +C+ I
Sbjct: 46 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISI 105
Query: 65 L-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 107
L +E+W P T+ +++S+ S+L DPN D P + A ++ D+
Sbjct: 106 LHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 161
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 13/130 (10%)
Query: 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 63
E+ F W+A IMGP D+ + GVF + FP DYP PPK+ F ++FHPNI +G +C+
Sbjct: 37 ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCIS 96
Query: 64 IL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 110
IL E+WSP ++ K+LLS+ S+L +PN + + + M++ D+ ++
Sbjct: 97 ILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQF 156
Query: 111 EATARSWTQK 120
A+ QK
Sbjct: 157 YKIAKQIVQK 166
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 101 bits (252), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 13/130 (10%)
Query: 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 63
E+ F W+A IMGP D+ + GVF + FP DYP PPK+ F ++FHPNI +G +C+
Sbjct: 34 ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCIS 93
Query: 64 IL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 110
IL E+WSP ++ K+LLS+ S+L +PN + + + M++ D+ ++
Sbjct: 94 ILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQF 153
Query: 111 EATARSWTQK 120
A+ QK
Sbjct: 154 YKIAKQIVQK 163
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 101 bits (252), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 13/130 (10%)
Query: 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 63
E+ F W+A IMGP D+ + GVF + FP DYP PPK+ F ++FHPNI +G +C+
Sbjct: 35 ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCIS 94
Query: 64 IL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 110
IL E+WSP ++ K+LLS+ S+L +PN + + + M++ D+ ++
Sbjct: 95 ILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQF 154
Query: 111 EATARSWTQK 120
A+ QK
Sbjct: 155 YKIAKQIVQK 164
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 101 bits (252), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 13/130 (10%)
Query: 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 63
E+ F W+A IMGP D+ + GVF + FP DYP PPK+ F ++FHPNI +G +C+
Sbjct: 31 ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCIS 90
Query: 64 IL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 110
IL E+WSP ++ K+LLS+ S+L +PN + + + M++ D+ ++
Sbjct: 91 ILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQF 150
Query: 111 EATARSWTQK 120
A+ QK
Sbjct: 151 YKIAKQIVQK 160
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 13/120 (10%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
D++ W+ ++GPPD+ Y GG F + FP DYP KPPK+ F ++++HPNI+ G++C+ I
Sbjct: 32 DIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISI 91
Query: 65 L-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 111
L +E+W P T+ +LLS+ S+LTDPN + P + A M + + A+++
Sbjct: 92 LHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFK 151
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN DP E +Y ++ +YE R+ +K+A
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++CL I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN DP E +Y ++ +YE R+ +K+A
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++CL I
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN DP E +Y ++ +YE R+ +K+A
Sbjct: 99 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++CL I
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN DP E +Y ++ +YE R+ +K+A
Sbjct: 99 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++CL I
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN DP E +Y ++ +YE R+ +K+A
Sbjct: 102 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++CL I
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN DP E +Y ++ +YE R+ +K+A
Sbjct: 98 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN DP E +Y ++ +YE R+ +K+A
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHP + +G++CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN DP E +Y ++ +YE R+ +K+A
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 13/124 (10%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++F W I GPPD+PYA GVF + FP DYP PPK+ F + HPNI NG +C+ I
Sbjct: 33 NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISI 92
Query: 65 L-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 111
L +E+WSP ++ K+LLS+ S+L++PN + + +++ ++ ++E
Sbjct: 93 LHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFE 152
Query: 112 ATAR 115
+
Sbjct: 153 RQVK 156
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN P E +Y ++ +YE R+ +K+A
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN P E +Y ++ +YE R+ +K+A
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++ L I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSI 96
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN DP E +Y ++ +YE R+ +K+A
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ +W+ I G +P+ GG+F + + F DYP PPK F +FHPN+ +G++ L I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L+E W PA+TI ++LL I LL +PN DP E +Y ++ +YE R+ +K+A
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
D+ W+A I G + +AGGV+ +T+ +P +YP KPPKV F +HPN+ +G+ICL I
Sbjct: 37 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 96
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L E W PA+T+ +++L + LL PNP+ P + +KA+Y+ ++Y+
Sbjct: 97 LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
D+ W+A I G + +AGGV+ +T+ +P +YP KPPKV F +HPN+ +G+ICL I
Sbjct: 39 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 98
Query: 65 LKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
L E W PA+T+ +++L + LL PNP+ P + +KA+Y+ ++Y+
Sbjct: 99 LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 158
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI 60
P ++++F W TI G + Y + +++ FP YP+ P V F T +HPN+++ G+I
Sbjct: 54 PESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNI 113
Query: 61 CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS 105
LDILKE+WS + +LLSI SLL +PN D PL A ++K+
Sbjct: 114 SLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 13/113 (11%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
D+++W+ I GPP++ Y GG F + FP DYP+ PP F TK++HPNI G +C+ I
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 65 L-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 104
L E+W+P + +LLS+ SLL +PN P + + MY+
Sbjct: 96 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 148
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 13/113 (11%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
D+++W+ I GPP++ Y GG F + FP DYP+ PP F TK++HPNI G +C+ I
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 65 L-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 104
L E+W+P + +LLS+ SLL +PN P + + MY+
Sbjct: 93 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 145
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 15 GPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPAL 73
GP +PY GGV+ V + P YPFK P + F K+FHPNI+ ++G++CLD++ + W+
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 74 TISKVLLSIC-SLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
++ + S LL PNP DPL + A MY +Y+ + + QKYA
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 8/119 (6%)
Query: 6 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDI 64
MFH GP + Y GG++ V + P DYPF P + F K+ HPN++ ++GS+CLD+
Sbjct: 34 MFH------GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDV 87
Query: 65 LKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
+ + W+P ++ V + + LLT PNP DPL + A + DK YE + + + YA
Sbjct: 88 INQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 63
+D+ +++ I P + Y G F+ + YP PPKV T V+HPNI+ G++CL+
Sbjct: 32 DDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLN 90
Query: 64 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123
IL+E W P LTI+ ++ + L +PNP+DPL E A + ++++ +E + + +
Sbjct: 91 ILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXRGGYI 150
Query: 124 G 124
G
Sbjct: 151 G 151
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 15 GPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPAL 73
GP +PY G +++ + P DYPFK P + F ++ HPN++ +GS+CLD++ + W+P
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 74 TISKVL-LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122
+ + + + LL PNP DPL + AH+ +D+ ++A R +A
Sbjct: 106 QLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA 155
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ W A ++ P PY F + I FPP+YPFKPP + F TK++HPN++ NG ICL I
Sbjct: 33 NVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPI 91
Query: 65 L-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123
+ E W P +VL ++ L+ PN +PL ++A + + + A +T ++ +
Sbjct: 92 ISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
++ W A ++ P PY F + I FPP+YPFKPP + F TK++HPN++ NG ICL I
Sbjct: 30 NVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPI 88
Query: 65 L-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123
+ E W P +VL ++ L+ PN +PL ++A + + + A +T ++ +
Sbjct: 89 ISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 148
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGS 59
PV+EDM W+ I G +S + G VF +TIHF +Y + PP V F T FHPN++ G
Sbjct: 47 PVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQ 106
Query: 60 ICLDILK--EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSW 117
C+D L E+W+ T+S +LL++ +L++P ++P+ E A + D++ Y R +
Sbjct: 107 PCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF 166
Query: 118 TQ 119
+
Sbjct: 167 NR 168
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 63
+D+ +++ I P + Y G F+ + YP PPKV T V+HPNI+ G++ L+
Sbjct: 52 DDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALN 110
Query: 64 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123
IL+E W P LTI+ ++ + L +PNP+DPL E A + ++++ +E + + +
Sbjct: 111 ILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYI 170
Query: 124 G 124
G
Sbjct: 171 G 171
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%)
Query: 12 TIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSP 71
I+ P + Y G + F YP +PPKV K+FHPNI+ G++CL+IL+E WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 72 ALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR 115
AL + ++ + L +PNP+DPL + A + + ++ R
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 1 PVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINS-N 57
P+ E D+ W+A I GP D+PY F + I P YP PPK++F + + H N+ S
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSAT 100
Query: 58 GSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-SDKAKYEATAR 115
G ICL+ILK E+W+P + + ++ LL +P D PL +I ++ + D + Y+ +
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 1 PVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINS-N 57
P+ E D+ W+A I GP D+PY F + I P YP PPK++F + + H N+ S
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 58 GSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-SDKAKYEATAR 115
G ICL+ILK E+W+P + + ++ LL +P D PL +I ++ + D + Y+ +
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 1 PVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINS-N 57
P+ E D+ W+A I GP D+PY F + I P YP PPK++F + + H N+ S
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 58 GSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-SDKAKYEATAR 115
G ICL+ILK E+W+P + + ++ LL +P D PL +I + + D + Y+ +
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQGIVK 160
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
+ H + P + Y GG F P Y PPKV TK++HPNI G ICL +
Sbjct: 42 NKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSL 101
Query: 65 LKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSW 117
L+E W+P T+ V+ + SL TD N DDPL E A + DK + +
Sbjct: 102 LREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDY 161
Query: 118 TQKYA 122
++YA
Sbjct: 162 IKRYA 166
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI 64
+ H + P + Y GG F P Y PPKV TK++HPNI G ICL +
Sbjct: 42 NKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSL 101
Query: 65 LKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSW 117
L+E W+P T+ V+ + SL TD N DDPL E A + DK + +
Sbjct: 102 LREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDY 161
Query: 118 TQKYA 122
++YA
Sbjct: 162 IKRYA 166
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGS 59
V + W + G P + Y G F + F YPF P+V F + HP++ SNG
Sbjct: 49 VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGH 108
Query: 60 ICLDILKEQWSPALTISKVLLSICSLLT 87
ICL IL E WSPAL++ V LSI S+L+
Sbjct: 109 ICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 9 WQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKE 67
W +G ++ YA V+ + I FP DYP KPP V F K H ++ SNG ICL +L +
Sbjct: 38 WIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGD 97
Query: 68 QWSPALTISKVLLSICSLLT 87
++P+L+IS ++LSI S+L+
Sbjct: 98 DYNPSLSISGLVLSIISMLS 117
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 9 WQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKE 67
W +G ++ YA V+ + I FP +YP KPP V F K H ++ SNG ICL +L +
Sbjct: 52 WIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGD 111
Query: 68 QWSPALTISKVLLSICSLLT 87
++P+L+IS ++LSI S+L+
Sbjct: 112 DYNPSLSISGLILSIISMLS 131
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 13 IMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDIL-- 65
I GP D+PYA G F ++FP DYP PP V T F+PN+ ++G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 66 -----KEQWSPAL-TISKVLLSICSLLTDPNP 91
+E+W+P + +VL+S+ SL+ P
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 6 MFHWQATIMGPPDSPY--AGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 63
+++W + P DS Y AG + +++ F DYP +PP V F T V+ P + G IC
Sbjct: 49 IYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDR 108
Query: 64 ILKEQWSP---ALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR 115
++ + W+P A + K++L DD + PE H + + A R
Sbjct: 109 MVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN--INSNG 58
P+ ++ W + GP +PY GG + + FP ++PFKPP + T PN N
Sbjct: 38 PLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNT 93
Query: 59 SICLDILK---EQWSPALTISKVLLSICSLLTDPNP 91
+CL I + W+PA ++S +L + S + + P
Sbjct: 94 RLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 6 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDI 64
M W TI+GPP S + ++ ++I P+YP PPKV F +K+ P +N + G + D
Sbjct: 38 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 97
Query: 65 LK-EQWSPALTISKVLLSICSLLTDP 89
W A T+ +LL + + P
Sbjct: 98 HTLRDWKRAYTMETLLLDLRKEMATP 123
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 6 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDI 64
M W TI+GPP S + ++ ++I P+YP PPKV F +K+ P +N + G + D
Sbjct: 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98
Query: 65 LK-EQWSPALTISKVLLSICSLLTDP 89
W A T+ +LL + + P
Sbjct: 99 HTLRDWKRAYTMETLLLDLRKEMATP 124
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 8 HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSIC---LDI 64
+W TI G P + + ++ +TI +YP PP V F TK+ +++ G + L I
Sbjct: 60 NWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHI 119
Query: 65 LKEQWSPALTISKVLLSI 82
LK W+ TI +L+S+
Sbjct: 120 LK-NWNRNYTIETILISL 136
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 8 HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSIC---LDI 64
+W TI G P + + ++ +TI +YP PP V F TK+ +++ G + L I
Sbjct: 56 NWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHI 115
Query: 65 LKEQWSPALTISKVLLSI 82
LK W+ TI +L+S+
Sbjct: 116 LK-NWNRNYTIETILISL 132
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 4 EDMF--HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI- 60
EDM W I+GPP + Y ++ + I P YP PP V F TK+ +NS+ +
Sbjct: 36 EDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
Query: 61 ---CLDILKEQWSPALTISKVLLSICSLL 86
+ +L +W + +I VL + L+
Sbjct: 96 DPRAISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 4 EDMF--HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI- 60
EDM W I+GPP + Y ++ + I P YP PP V F TK+ +NS+ +
Sbjct: 64 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
Query: 61 ---CLDILKEQWSPALTISKVLLSICSLL 86
+ +L +W + +I VL + L+
Sbjct: 124 DPRAISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 4 EDMF--HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI- 60
EDM W I+GPP + Y ++ + I P YP PP V F TK+ +NS+ +
Sbjct: 54 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
Query: 61 ---CLDILKEQWSPALTISKVLLSICSLL 86
+ +L +W + +I VL + L+
Sbjct: 114 DPRAISVLA-KWQNSYSIKVVLQELRRLM 141
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 4 EDMF--HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSIC 61
EDM W I+GPP + Y ++ + + P YP PP V F TK+ IN N S
Sbjct: 39 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN-NSSGM 97
Query: 62 LDI----LKEQWSPALTISKVLLSICSLL 86
+D + +W + +I VL + L+
Sbjct: 98 VDARSIPVLAKWQNSYSIKVVLQELRRLM 126
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 4 EDMF--HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSIC 61
EDM W I+GPP + Y ++ + + P YP PP V F TK+ IN N S
Sbjct: 34 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN-NSSGM 92
Query: 62 LDI----LKEQWSPALTISKVLLSICSLL 86
+D + +W + +I VL + L+
Sbjct: 93 VDARSIPVLAKWQNSYSIKVVLQELRRLM 121
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 4 EDMF--HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSIC 61
EDM W I+GPP + Y ++ + + P YP PP V F TK+ IN N S
Sbjct: 33 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN-NSSGM 91
Query: 62 LDI----LKEQWSPALTISKVLLSICSLL 86
+D + +W + +I VL + L+
Sbjct: 92 VDARSIPVLAKWQNSYSIKVVLQELRRLM 120
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 4 EDMF--HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSIC 61
EDM W I+GPP + Y ++ + + P YP PP V F TK+ IN N S
Sbjct: 44 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN-NSSGM 102
Query: 62 LDI----LKEQWSPALTISKVLLSICSLL 86
+D + +W + +I VL + L+
Sbjct: 103 VDARSIPVLAKWQNSYSIKVVLQELRRLM 131
>pdb|3R3Q|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain
pdb|3R42|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain In Complex
With A Vps27 Psdp Peptide
Length = 162
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 28 VTIHFPPDYPFKPPKVAFRTKVFHPN-----------INSNGSICLDILKEQWSP-ALTI 75
V + P YP KPP ++ + F N I+SNG I L IL W P A+ +
Sbjct: 85 VIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDPAAMNL 143
Query: 76 SKVLLSICSLLTDPNPD 92
V+ + SLL +P D
Sbjct: 144 IMVVQELMSLLHEPPQD 160
>pdb|3CP3|A Chain A, Crystal Structure Of Conserved Protein Of Unknown
Function Dip1874 From Corynebacterium Diphtheriae
Length = 148
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 30 IHFPPDYPFKPPKVAFR----TKVFHPNINSNGSICLDILK--EQWSPAL 73
++F DY + P+V FR TK+F N+NS+ +D E WS L
Sbjct: 45 VNFVLDYSAEQPRVYFRTAEGTKLFSVNLNSDVLFEVDRFDDAEGWSVVL 94
>pdb|1UZX|A Chain A, A Complex Of The Vps23 Uev With Ubiquitin
Length = 169
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 33 PPDYPFKPPKVAFRTKVFHPN-----------INSNGSICLDILKEQWSP-ALTISKVLL 80
P YP KPP ++ + F N I+SNG I L IL W P A + V+
Sbjct: 96 PSXYPVKPPFISINLENFDXNTISSSLPIQEYIDSNGWIALPIL-HCWDPAAXNLIXVVQ 154
Query: 81 SICSLLTDPNPD 92
+ SLL +P D
Sbjct: 155 ELXSLLHEPPQD 166
>pdb|2F8L|A Chain A, Crystal Structure Of A Putative Class I
S-Adenosylmethionine-Dependent Methyltransferase
(Lmo1582) From Listeria Monocytogenes At 2.20 A
Resolution
Length = 344
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 77 KVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 107
+VLL+ S LTDP+ P++ EI + +KS +
Sbjct: 314 EVLLANLSSLTDPSVTAPILAEIENWFKSKQ 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,522,852
Number of Sequences: 62578
Number of extensions: 179137
Number of successful extensions: 566
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 125
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)