Query 040496
Match_columns 124
No_of_seqs 145 out of 1039
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 3.3E-52 7.2E-57 282.2 13.3 124 1-124 25-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 2.7E-50 5.7E-55 277.7 13.9 123 1-123 29-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 1.9E-47 4.1E-52 265.1 15.3 124 1-124 26-149 (152)
4 PLN00172 ubiquitin conjugating 100.0 1E-46 2.3E-51 260.3 15.3 123 1-123 25-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 9.5E-47 2.1E-51 250.0 12.9 122 1-122 28-149 (152)
6 KOG0424 Ubiquitin-protein liga 100.0 5.3E-44 1.1E-48 239.9 12.0 122 3-124 35-158 (158)
7 KOG0425 Ubiquitin-protein liga 100.0 7.9E-43 1.7E-47 237.3 13.4 119 3-121 32-163 (171)
8 KOG0418 Ubiquitin-protein liga 100.0 5.6E-43 1.2E-47 244.3 11.4 123 2-124 31-154 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 3.7E-41 8.1E-46 230.5 11.6 115 4-118 25-140 (140)
10 smart00212 UBCc Ubiquitin-conj 100.0 2.7E-40 5.8E-45 227.5 15.1 121 2-122 23-145 (145)
11 KOG0421 Ubiquitin-protein liga 100.0 6.6E-41 1.4E-45 225.3 10.3 119 1-120 53-171 (175)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 3E-40 6.5E-45 226.3 13.1 118 1-118 23-141 (141)
13 KOG0416 Ubiquitin-protein liga 100.0 4E-39 8.7E-44 221.8 10.3 121 3-123 26-148 (189)
14 KOG0426 Ubiquitin-protein liga 100.0 5.2E-38 1.1E-42 208.7 11.9 121 2-122 30-163 (165)
15 KOG0422 Ubiquitin-protein liga 100.0 4.2E-36 9.1E-41 200.9 13.0 120 3-123 29-149 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 8.2E-35 1.8E-39 200.7 11.0 115 8-123 61-175 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 1.6E-33 3.4E-38 194.9 5.4 123 2-124 35-157 (223)
18 KOG0427 Ubiquitin conjugating 99.9 1.9E-25 4.1E-30 148.5 8.9 88 2-89 39-127 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 1.5E-24 3.2E-29 154.8 13.5 90 1-92 29-121 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 3.4E-23 7.3E-28 148.3 11.5 120 1-121 43-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 1.5E-20 3.2E-25 136.8 8.6 85 1-87 34-121 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 6.1E-16 1.3E-20 130.3 4.3 85 6-90 880-973 (1101)
23 KOG0896 Ubiquitin-conjugating 99.5 5E-14 1.1E-18 94.3 6.7 83 6-88 38-123 (138)
24 KOG0895 Ubiquitin-conjugating 99.4 7.8E-13 1.7E-17 111.9 8.7 89 1-89 306-405 (1101)
25 KOG0897 Predicted ubiquitin-co 98.9 4.3E-09 9.2E-14 68.8 6.3 90 26-116 13-108 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.8 2E-08 4.3E-13 68.2 7.6 67 22-88 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.6 1.5E-07 3.2E-12 63.1 5.4 78 6-88 32-117 (121)
28 KOG2391 Vacuolar sorting prote 97.7 0.00013 2.7E-09 56.3 6.5 72 18-90 60-139 (365)
29 PF14462 Prok-E2_E: Prokaryoti 96.3 0.049 1.1E-06 36.5 7.9 73 13-87 29-120 (122)
30 PF14457 Prok-E2_A: Prokaryoti 95.3 0.029 6.4E-07 39.3 4.1 61 28-88 57-126 (162)
31 PF05773 RWD: RWD domain; Int 95.1 0.06 1.3E-06 34.4 4.9 42 8-49 31-74 (113)
32 PF08694 UFC1: Ubiquitin-fold 95.1 0.024 5.2E-07 38.9 3.0 65 15-79 56-135 (161)
33 smart00591 RWD domain in RING 93.8 0.091 2E-06 33.3 3.4 27 22-48 39-65 (107)
34 KOG3357 Uncharacterized conser 84.4 2.3 5E-05 28.9 4.2 65 9-73 53-129 (167)
35 PF06113 BRE: Brain and reprod 82.8 4.1 8.8E-05 31.9 5.6 60 20-85 61-123 (333)
36 PF14460 Prok-E2_D: Prokaryoti 76.0 4.1 8.9E-05 28.7 3.5 40 46-88 89-131 (175)
37 TIGR03737 PRTRC_B PRTRC system 70.4 7.6 0.00016 28.8 3.8 39 47-89 131-173 (228)
38 KOG4018 Uncharacterized conser 68.9 5.3 0.00012 29.3 2.7 21 25-45 50-70 (215)
39 cd00421 intradiol_dioxygenase 67.2 9.8 0.00021 25.9 3.7 26 22-47 64-90 (146)
40 PF09765 WD-3: WD-repeat regio 66.0 15 0.00032 28.3 4.7 66 3-88 122-188 (291)
41 cd03457 intradiol_dioxygenase_ 65.4 11 0.00023 27.1 3.7 26 22-47 85-110 (188)
42 cd03459 3,4-PCD Protocatechuat 59.2 17 0.00036 25.3 3.7 26 22-47 71-101 (158)
43 KOG0177 20S proteasome, regula 59.2 5.7 0.00012 28.6 1.3 32 57-88 135-166 (200)
44 cd07981 TAF12 TATA Binding Pro 58.6 34 0.00074 20.4 4.6 43 81-123 6-48 (72)
45 KOG0309 Conserved WD40 repeat- 56.2 25 0.00055 30.8 4.8 38 10-48 452-491 (1081)
46 KOG2851 Eukaryotic-type DNA pr 50.3 38 0.00083 27.0 4.7 32 54-85 332-369 (412)
47 PF06113 BRE: Brain and reprod 49.0 25 0.00055 27.6 3.5 25 24-48 306-330 (333)
48 PF03366 YEATS: YEATS family; 48.5 64 0.0014 19.9 5.3 43 7-51 2-44 (84)
49 KOG3696 Aspartyl beta-hydroxyl 44.7 43 0.00094 26.1 4.1 48 9-57 273-326 (334)
50 TIGR02423 protocat_alph protoc 44.5 36 0.00078 24.5 3.6 25 22-46 95-124 (193)
51 cd03463 3,4-PCD_alpha Protocat 43.6 39 0.00084 24.2 3.6 24 23-46 92-120 (185)
52 PF03847 TFIID_20kDa: Transcri 41.9 75 0.0016 18.9 4.4 43 81-123 4-46 (68)
53 PF12652 CotJB: CotJB protein; 39.8 72 0.0016 19.6 3.9 30 93-122 25-54 (78)
54 PF12018 DUF3508: Domain of un 39.6 46 0.001 25.2 3.7 30 93-122 237-266 (281)
55 KOG1047 Bifunctional leukotrie 38.9 32 0.00069 29.0 2.8 29 19-48 248-279 (613)
56 KOG0662 Cyclin-dependent kinas 37.3 36 0.00079 25.0 2.6 55 38-92 167-225 (292)
57 TIGR02439 catechol_proteo cate 35.9 56 0.0012 25.1 3.6 26 22-47 179-222 (285)
58 PF09943 DUF2175: Uncharacteri 35.8 39 0.00084 21.9 2.3 20 7-28 1-20 (101)
59 COG2847 Copper(I)-binding prot 35.4 73 0.0016 22.1 3.8 27 9-35 105-131 (151)
60 KOG4445 Uncharacterized conser 34.7 53 0.0012 25.6 3.3 25 24-48 45-69 (368)
61 COG3866 PelB Pectate lyase [Ca 33.1 83 0.0018 24.7 4.1 39 8-47 198-240 (345)
62 PF11333 DUF3135: Protein of u 33.0 1E+02 0.0022 19.1 3.8 24 98-121 8-31 (83)
63 cd03461 1,2-HQD Hydroxyquinol 32.7 68 0.0015 24.5 3.6 25 22-46 171-213 (277)
64 cd05845 Ig2_L1-CAM_like Second 31.3 1.3E+02 0.0029 18.9 4.3 26 21-48 16-41 (95)
65 PF04314 DUF461: Protein of un 30.3 61 0.0013 20.8 2.6 27 8-34 77-103 (110)
66 cd03460 1,2-CTD Catechol 1,2 d 30.0 81 0.0018 24.2 3.6 25 22-46 175-217 (282)
67 PF00845 Gemini_BL1: Geminivir 29.2 1.3E+02 0.0029 22.7 4.5 46 4-50 100-154 (276)
68 TIGR02438 catachol_actin catec 28.6 90 0.0019 23.9 3.6 25 22-46 183-225 (281)
69 cd03464 3,4-PCD_beta Protocate 27.5 98 0.0021 22.8 3.6 25 22-46 121-152 (220)
70 TIGR02465 chlorocat_1_2 chloro 27.1 1E+02 0.0022 23.1 3.7 25 22-46 149-191 (246)
71 TIGR02422 protocat_beta protoc 27.1 1E+02 0.0022 22.7 3.6 25 22-46 116-147 (220)
72 PF02563 Poly_export: Polysacc 27.0 1E+02 0.0022 18.5 3.1 36 53-88 34-69 (82)
73 COG2819 Predicted hydrolase of 26.3 1.2E+02 0.0025 23.2 3.8 31 18-48 15-47 (264)
74 PF10346 Con-6: Conidiation pr 25.9 79 0.0017 16.5 2.1 28 76-103 4-31 (36)
75 PF01175 Urocanase: Urocanase; 25.9 1.2E+02 0.0026 25.4 4.1 26 97-122 272-297 (546)
76 cd01145 TroA_c Periplasmic bin 25.1 91 0.002 22.1 3.0 47 69-121 111-157 (203)
77 cd01019 ZnuA Zinc binding prot 24.6 1.3E+02 0.0027 22.7 3.8 48 69-122 124-171 (286)
78 PF11745 DUF3304: Protein of u 24.1 32 0.0007 22.5 0.5 19 57-75 50-68 (118)
79 TIGR01228 hutU urocanate hydra 24.0 95 0.0021 25.9 3.2 26 97-122 273-298 (545)
80 PRK05414 urocanate hydratase; 23.6 97 0.0021 26.0 3.2 26 97-122 282-307 (556)
81 PF09280 XPC-binding: XPC-bind 23.3 1.4E+02 0.003 17.2 3.0 22 94-115 33-54 (59)
82 PF08369 PCP_red: Proto-chloro 22.7 1.4E+02 0.0031 16.1 3.2 27 97-123 3-29 (45)
83 COG1225 Bcp Peroxiredoxin [Pos 22.2 1.3E+02 0.0028 21.0 3.2 32 53-86 125-156 (157)
84 PF13950 Epimerase_Csub: UDP-g 21.9 75 0.0016 18.3 1.7 18 67-84 36-53 (62)
85 cd03458 Catechol_intradiol_dio 21.8 1.5E+02 0.0032 22.5 3.6 26 22-47 155-198 (256)
86 PF04881 Adeno_GP19K: Adenovir 21.1 1.1E+02 0.0024 20.8 2.6 19 4-22 45-63 (139)
87 smart00545 JmjN Small domain f 20.9 1.2E+02 0.0025 16.3 2.2 19 105-123 13-31 (42)
88 smart00803 TAF TATA box bindin 20.8 1.9E+02 0.0041 16.8 4.8 30 94-123 19-48 (65)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-52 Score=282.21 Aligned_cols=124 Identities=78% Similarity=1.445 Sum_probs=122.2
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|..+|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||++.|.||+|+|+++|+|+.+|..||.
T Consensus 25 ~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk~~WsPAl~i~~Vll 104 (148)
T KOG0417|consen 25 PVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILKDQWSPALTISKVLL 104 (148)
T ss_pred CCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhhccCChhhHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|++||.+|++++|++.+++.+|+.|+.+|.++||+|++|||++
T Consensus 105 sI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 105 SICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred HHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999986
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-50 Score=277.72 Aligned_cols=123 Identities=58% Similarity=1.200 Sum_probs=120.1
Q ss_pred CCCC-CcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHH
Q 040496 1 PVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVL 79 (124)
Q Consensus 1 P~~~-dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il 79 (124)
|+.+ |+++|++.|.||.+||||||+|++.|.||++||++||+|+|.+++|||||+.+|+||+++|.+.|+|+++|.+||
T Consensus 29 p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~~~WsP~~~l~sIL 108 (153)
T COG5078 29 PVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETIL 108 (153)
T ss_pred ECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHhCCCCccccHHHHH
Confidence 4555 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 80 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 80 ~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
.+|+++|.+||.++|+|.+|+++|++|+++|.++||+++++||.
T Consensus 109 lsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 109 LSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred HHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.9e-47 Score=265.15 Aligned_cols=124 Identities=48% Similarity=0.939 Sum_probs=121.3
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|++||++||+
T Consensus 26 ~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~ 105 (152)
T PTZ00390 26 PDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 105 (152)
T ss_pred ECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCcccCCCCCcHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 106 ~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 106 SIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999974
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1e-46 Score=260.25 Aligned_cols=123 Identities=74% Similarity=1.366 Sum_probs=120.3
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+++||||+.+|.||+++|.++|+|++||++||.
T Consensus 25 ~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~~~W~p~~ti~~il~ 104 (147)
T PLN00172 25 PSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLL 104 (147)
T ss_pred ECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCcCCCCCcCcHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+|+++|.+|++++|+|.+|+++|.+|+++|.++||+|+++||.
T Consensus 105 ~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 105 SISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999984
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-47 Score=250.01 Aligned_cols=122 Identities=43% Similarity=0.919 Sum_probs=119.5
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|+++|+++|.++|+||.+|||+||+|++.|.|+++||.+||.|+|++.+|||||+.+|.+|+|+|...|+|+|++..||.
T Consensus 28 P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLqNrWsp~Ydva~ILt 107 (152)
T KOG0419|consen 28 PVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVASILT 107 (152)
T ss_pred CCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHhcCCCCchhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
+||+||.+|++++|+|.+||++|++|+.+|.+++++.+.|..
T Consensus 108 siQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 108 SIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred HHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988754
No 6
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-44 Score=239.94 Aligned_cols=122 Identities=39% Similarity=0.855 Sum_probs=118.2
Q ss_pred CCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceeccccccc--CCCcCCHHHHHH
Q 040496 3 AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLL 80 (124)
Q Consensus 3 ~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~--W~p~~~i~~il~ 80 (124)
..|++.|+|.|.|++||+||||.|.+++.||++||.+||+++|.+++|||||+++|.|||++|.+. |+|++||.+||.
T Consensus 35 ~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~ 114 (158)
T KOG0424|consen 35 TLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILL 114 (158)
T ss_pred cceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHH
Confidence 358999999999999999999999999999999999999999999999999999999999999755 999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
.||+||.+||+.+|+|.||...|.+|+.+|.++||.++++||..
T Consensus 115 gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 115 GIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred HHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999963
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-43 Score=237.29 Aligned_cols=119 Identities=37% Similarity=0.880 Sum_probs=115.0
Q ss_pred CCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceeccccc-------------ccC
Q 040496 3 AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQW 69 (124)
Q Consensus 3 ~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~-------------~~W 69 (124)
+.|+++|.+.|+||++|.||||.|+..+.||.+||.+||+++|.+.+|||||+++|.+|+++|. +.|
T Consensus 32 ~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW 111 (171)
T KOG0425|consen 32 DSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERW 111 (171)
T ss_pred CCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhcc
Confidence 3599999999999999999999999999999999999999999999999999999999999992 579
Q ss_pred CCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHh
Q 040496 70 SPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 121 (124)
Q Consensus 70 ~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 121 (124)
+|..|+++||++|.+||.+||.++|+|.+|++.|++++++|+++++++|++.
T Consensus 112 ~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 112 LPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-43 Score=244.26 Aligned_cols=123 Identities=48% Similarity=0.920 Sum_probs=120.2
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeC-CCceecccccccCCCcCCHHHHHH
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
.++|+.+..+.|.||+|||||||+|.+.|++|++||++||+|+|.|+||||||.+ +|.||+|+|++.|++++|++.+|+
T Consensus 31 vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLi 110 (200)
T KOG0418|consen 31 VNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLI 110 (200)
T ss_pred ccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchhhhHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999996 999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+||++|..|++.+|....++++|.++++.|.+.||.|+..||+|
T Consensus 111 slQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 111 SLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred HHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999986
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.7e-41 Score=230.48 Aligned_cols=115 Identities=57% Similarity=1.194 Sum_probs=106.2
Q ss_pred CCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccc-cCCCcCCHHHHHHHH
Q 040496 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE-QWSPALTISKVLLSI 82 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~-~W~p~~~i~~il~~i 82 (124)
+|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+.+|.||+++|.. .|+|+++|.+||.+|
T Consensus 25 ~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i 104 (140)
T PF00179_consen 25 DNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNPESWSPSYTIESILLSI 104 (140)
T ss_dssp TETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHH
T ss_pred CChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhhhcccCCcccccccHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999999974 599999999999999
Q ss_pred HHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHH
Q 040496 83 CSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWT 118 (124)
Q Consensus 83 ~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 118 (124)
+++|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 105 ~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 105 QSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp HHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred HHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999999999999999999999999999999984
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.7e-40 Score=227.52 Aligned_cols=121 Identities=60% Similarity=1.195 Sum_probs=117.4
Q ss_pred CCC-CcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceeccccc-ccCCCcCCHHHHH
Q 040496 2 VAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVL 79 (124)
Q Consensus 2 ~~~-dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~-~~W~p~~~i~~il 79 (124)
.++ |+++|+++|.||.+|||+||+|++.|.||++||.+||+|+|.++++||||+++|.||+++|. ++|+|++++++||
T Consensus 23 ~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il 102 (145)
T smart00212 23 VDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQEKWSPATTLETVL 102 (145)
T ss_pred CCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCCCCCCCCCcHHHHH
Confidence 344 99999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 80 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 80 ~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
.+|+++|.+|+.++++|.+|+++|++|++.|+++|+++++|++
T Consensus 103 ~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 103 LSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999985
No 11
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-41 Score=225.25 Aligned_cols=119 Identities=40% Similarity=0.866 Sum_probs=115.5
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.+||++.|.++|.||++|+|+|-.|++.+.||.+||++||+|+|+|++||||||..|.||+|+|++.|+..+++++||.
T Consensus 53 P~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILL 132 (175)
T KOG0421|consen 53 PESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILL 132 (175)
T ss_pred cCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k 120 (124)
+||+||-+||.++|+|..||.++. |.++|++.+.++-++
T Consensus 133 SiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 133 SIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred HHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 999999999999999999999999 999999999887654
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3e-40 Score=226.33 Aligned_cols=118 Identities=57% Similarity=1.164 Sum_probs=114.2
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceeccccccc-CCCcCCHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVL 79 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~-W~p~~~i~~il 79 (124)
|.++|+++|+++|.||++|||+||+|++.|.||++||.+||+|+|.++++||||+.+|.||++++... |+|++++++||
T Consensus 23 ~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~~~W~p~~~l~~il 102 (141)
T cd00195 23 PVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVL 102 (141)
T ss_pred ECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCCCCcCCcCcHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999876 99999999999
Q ss_pred HHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHH
Q 040496 80 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWT 118 (124)
Q Consensus 80 ~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 118 (124)
.+|+++|.+|+.++++|.+|+++|++|+++|+++|++|+
T Consensus 103 ~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 103 LSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999974
No 13
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-39 Score=221.80 Aligned_cols=121 Identities=40% Similarity=0.870 Sum_probs=116.7
Q ss_pred CCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeC-CCceecccccccCCCcCCHHHHHHH
Q 040496 3 AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS 81 (124)
Q Consensus 3 ~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~W~p~~~i~~il~~ 81 (124)
++++.+.+|.+.||++||||||++++++++|++||++.|.|.|+++||||||+. +|.|||+.+.+.|+|.+++..|+..
T Consensus 26 nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL~NIfet 105 (189)
T KOG0416|consen 26 NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDLVNIFET 105 (189)
T ss_pred cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHHHHHHHHH
Confidence 456999999999999999999999999999999999999999999999999995 9999999999999999999999977
Q ss_pred -HHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 82 -ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 82 -i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
|-.||..||+.+|+|.+||.+|.++++.|.+++|++++|||+
T Consensus 106 fLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 106 FLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred HhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999999999999999999996
No 14
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-38 Score=208.65 Aligned_cols=121 Identities=37% Similarity=0.850 Sum_probs=116.6
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceeccccc-------------cc
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQ 68 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~-------------~~ 68 (124)
++||+++|.|.|.||.+|+|+||+|..++.||.+||.+||+++|...+|||||+++|++|+++|. +.
T Consensus 30 ~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ER 109 (165)
T KOG0426|consen 30 NEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAER 109 (165)
T ss_pred CccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhc
Confidence 36899999999999999999999999999999999999999999999999999999999999982 57
Q ss_pred CCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 69 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 69 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
|+|..+++.||.++.+||.+||-++++|.+|+.++++|+++|.+.|+..++|.-
T Consensus 110 WSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 110 WSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKTL 163 (165)
T ss_pred CChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999864
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-36 Score=200.89 Aligned_cols=120 Identities=38% Similarity=0.903 Sum_probs=116.4
Q ss_pred CCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccc-cccCCCcCCHHHHHHH
Q 040496 3 AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLS 81 (124)
Q Consensus 3 ~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l-~~~W~p~~~i~~il~~ 81 (124)
++|++.|++.|. |.+-||..|.|+++|.||.+||++||.|.|.|.|||||||+.|.+|+.++ .++|.|++++.+||+.
T Consensus 29 e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqVlqa 107 (153)
T KOG0422|consen 29 EANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQVLQA 107 (153)
T ss_pred cccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHHHHHH
Confidence 579999999998 78999999999999999999999999999999999999999999999998 4899999999999999
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 82 ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 82 i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
|.+++.+|+++.|++.++|..|.+|+..|.++|.++++||+.
T Consensus 108 Li~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 108 LIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred HHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999985
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-35 Score=200.75 Aligned_cols=115 Identities=37% Similarity=0.765 Sum_probs=110.9
Q ss_pred eEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHHHHHHhhc
Q 040496 8 HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 87 (124)
Q Consensus 8 ~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 87 (124)
+.+++|. |.++.|+||.|.|.+.+|+.||++||+|+++|++||||||.+|.|||++|.++|+|+.+|.+|+-.|+.+|.
T Consensus 61 ~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~ 139 (184)
T KOG0420|consen 61 EFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFL 139 (184)
T ss_pred eEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhc
Confidence 4899997 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 88 DPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 88 ~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+|+++||+|.+||.++++|++.|..+||.....++.
T Consensus 140 epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 140 EPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred cCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999998776654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=194.86 Aligned_cols=123 Identities=41% Similarity=0.745 Sum_probs=119.1
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHHH
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLS 81 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~~ 81 (124)
.++|++...+.|.||.||||++|+|+.++.+..+||.+||+-+|+|+||||||-.+|.||.+.|+.+|+|+..|+.||..
T Consensus 35 NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLKkDW~p~LGirHvLlt 114 (223)
T KOG0423|consen 35 NEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLKKDWNPSLGIRHVLLT 114 (223)
T ss_pred ChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhhcccCcccchhhHhhh
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 82 ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 82 i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
|+.+|..|++++.+|.+|.+++.++.++|.++||-++.-+|+.
T Consensus 115 ikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 115 IKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred hheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999988863
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.9e-25 Score=148.51 Aligned_cols=88 Identities=40% Similarity=0.855 Sum_probs=84.1
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEeccc-ccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
+.||+.+|.+-+.|.+||.|+|.+|.+.++||+.||++.|.|.|..++ .||+|+++|.||+++|.++|+|++++.+|-+
T Consensus 39 v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvCl 118 (161)
T KOG0427|consen 39 VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCL 118 (161)
T ss_pred cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeecccCCcchhhHHHHH
Confidence 358999999999999999999999999999999999999999999876 6999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q 040496 81 SICSLLTDP 89 (124)
Q Consensus 81 ~i~~ll~~p 89 (124)
+|.+||++-
T Consensus 119 SIlSMLSSs 127 (161)
T KOG0427|consen 119 SILSMLSSS 127 (161)
T ss_pred HHHHHHccC
Confidence 999999863
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-24 Score=154.79 Aligned_cols=90 Identities=33% Similarity=0.850 Sum_probs=82.5
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccc---cccCCCcCCHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISK 77 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l---~~~W~p~~~i~~ 77 (124)
|..+|+++||.+|.||++|||+||.|+.+|.||.+||++||.|+++|+ +..+-.+-++||++- .+.|+|++++.+
T Consensus 29 P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktntRLCLSiSDfHPdsWNP~WsVSt 106 (244)
T KOG0894|consen 29 PNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTNTRLCLSISDFHPDSWNPGWSVST 106 (244)
T ss_pred CCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecCceEEEeccccCcCcCCCcccHHH
Confidence 678999999999999999999999999999999999999999999998 466667789999887 489999999999
Q ss_pred HHHHHHHhhcCCCCC
Q 040496 78 VLLSICSLLTDPNPD 92 (124)
Q Consensus 78 il~~i~~ll~~p~~~ 92 (124)
||..|.++|.+-.+.
T Consensus 107 ILtGLlSFM~e~~pT 121 (244)
T KOG0894|consen 107 ILTGLLSFMTEDSPT 121 (244)
T ss_pred HHHHHHHHHhcCCCc
Confidence 999999999875544
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-23 Score=148.34 Aligned_cols=120 Identities=28% Similarity=0.504 Sum_probs=108.7
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCC--CCCeeEEecccccceEeC-CCceecccccccCCCcC-CHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPF--KPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPAL-TIS 76 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~--~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~W~p~~-~i~ 76 (124)
|+-.|-+.|-++|++ +.+.|.||+|+|.|.+|++||. +-|+|.|.+.++||+|.+ ++.+|+......|+-.. +|+
T Consensus 43 PSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~eWRk~ehhiw 121 (258)
T KOG0429|consen 43 PSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPEWRKEEHHIW 121 (258)
T ss_pred ccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhhhhccccHHH
Confidence 667788999999997 4567999999999999999994 689999999999999996 99999988877799876 699
Q ss_pred HHHHHHHHhhcCCCCCCC--ccHHHHHHHHHCHHHHHHHHHHHHHHh
Q 040496 77 KVLLSICSLLTDPNPDDP--LVPEIAHMYKSDKAKYEATARSWTQKY 121 (124)
Q Consensus 77 ~il~~i~~ll~~p~~~~~--~n~~a~~~~~~~~~~f~~~~~~~~~k~ 121 (124)
++|.+||..|++|+.+.+ .|++|+.+|++++++|.++|+++++..
T Consensus 122 qvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 122 QVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred HHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999987755 599999999999999999999998753
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.5e-20 Score=136.84 Aligned_cols=85 Identities=36% Similarity=0.860 Sum_probs=78.8
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccc---cccCCCcCCHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISK 77 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l---~~~W~p~~~i~~ 77 (124)
|.+||+++||..|.||.+|-||||+|+.+|.||.+||++||.+..+|+ +..+..+-+||+++- .+.|.|+++|+.
T Consensus 34 plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~nkKiCLSISgyHPEtWqPSWSiRT 111 (314)
T KOG0428|consen 34 PLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVNKKICLSISGYHPETWQPSWSIRT 111 (314)
T ss_pred cchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeCceEEEEecCCCccccCcchhHHH
Confidence 678999999999999999999999999999999999999999999998 566667889999987 488999999999
Q ss_pred HHHHHHHhhc
Q 040496 78 VLLSICSLLT 87 (124)
Q Consensus 78 il~~i~~ll~ 87 (124)
.|.+|..+|-
T Consensus 112 ALlAlIgFmP 121 (314)
T KOG0428|consen 112 ALLALIGFMP 121 (314)
T ss_pred HHHHHHcccc
Confidence 9999999885
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.1e-16 Score=130.33 Aligned_cols=85 Identities=36% Similarity=0.796 Sum_probs=76.6
Q ss_pred cceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecc--cccceEeCCCceeccccc-------ccCCCcCCHH
Q 040496 6 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSNGSICLDILK-------EQWSPALTIS 76 (124)
Q Consensus 6 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~--i~Hpnv~~~G~icl~~l~-------~~W~p~~~i~ 76 (124)
+....++|.|+.+|||.+|.|.|.+.||++||.+||.+...+. .++||.+.+|++|+++|. +.|+|+.+|.
T Consensus 880 ~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~l 959 (1101)
T KOG0895|consen 880 MDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSIL 959 (1101)
T ss_pred HHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHH
Confidence 3345678999999999999999999999999999999999985 579999999999999993 6799999999
Q ss_pred HHHHHHHHhhcCCC
Q 040496 77 KVLLSICSLLTDPN 90 (124)
Q Consensus 77 ~il~~i~~ll~~p~ 90 (124)
++|.+||.|+....
T Consensus 960 q~l~s~q~l~l~~~ 973 (1101)
T KOG0895|consen 960 QVLVSIQGLVLNEE 973 (1101)
T ss_pred HHHHHhhhhhcccc
Confidence 99999999988643
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5e-14 Score=94.27 Aligned_cols=83 Identities=30% Similarity=0.583 Sum_probs=73.4
Q ss_pred cceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeC-CCceecccc--cccCCCcCCHHHHHHHH
Q 040496 6 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDIL--KEQWSPALTISKVLLSI 82 (124)
Q Consensus 6 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l--~~~W~p~~~i~~il~~i 82 (124)
+..|.+.|.||+.|+||+-+|.++|.+..+||..||+|+|.+++--.-|+. +|.+.-..+ -.+|...+++..+|..+
T Consensus 38 l~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~l 117 (138)
T KOG0896|consen 38 LTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQL 117 (138)
T ss_pred EeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhh
Confidence 568999999999999999999999999999999999999999998888874 777765333 38999999999999999
Q ss_pred HHhhcC
Q 040496 83 CSLLTD 88 (124)
Q Consensus 83 ~~ll~~ 88 (124)
+.+|..
T Consensus 118 r~~m~~ 123 (138)
T KOG0896|consen 118 RKEMMS 123 (138)
T ss_pred hHHHHH
Confidence 986654
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.8e-13 Score=111.88 Aligned_cols=89 Identities=39% Similarity=0.783 Sum_probs=81.1
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecc---cccceEeCCCceeccccc-------ccCC
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK---VFHPNINSNGSICLDILK-------EQWS 70 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~---i~Hpnv~~~G~icl~~l~-------~~W~ 70 (124)
|.+.++...++.|.||.+|||++|+|.|.|.||..||..||.+.+.+. .+.||.+.+|+||+++|. +.|+
T Consensus 306 p~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wt 385 (1101)
T KOG0895|consen 306 PDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWT 385 (1101)
T ss_pred ccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCC
Confidence 345677888999999999999999999999999999999999999987 579999999999999982 6799
Q ss_pred Cc-CCHHHHHHHHHHhhcCC
Q 040496 71 PA-LTISKVLLSICSLLTDP 89 (124)
Q Consensus 71 p~-~~i~~il~~i~~ll~~p 89 (124)
|. .+|.++|..||.++...
T Consensus 386 p~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 386 PNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred ccccchhhhhhhhhhhhccc
Confidence 98 78999999999999865
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.3e-09 Score=68.85 Aligned_cols=90 Identities=21% Similarity=0.475 Sum_probs=66.5
Q ss_pred EEEEEeCCCCCCCCCCeeEEecccc-cceEeCCCceecccc-cccCCCcCCHHHHHHHHHHhhcCCCC--CCCccHHHHH
Q 040496 26 FLVTIHFPPDYPFKPPKVAFRTKVF-HPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNP--DDPLVPEIAH 101 (124)
Q Consensus 26 f~~~i~fp~~yP~~pP~v~f~t~i~-Hpnv~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~--~~~~n~~a~~ 101 (124)
.-+.+.|+++||+.||.++...++- ..-|-.+|.||+.+| .++|+.+++++.++++|..++..... ..+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 4567789999999999999887653 445557999999999 58899999999999999999998654 355544433
Q ss_pred HHHH--CHHHHHHHHHH
Q 040496 102 MYKS--DKAKYEATARS 116 (124)
Q Consensus 102 ~~~~--~~~~f~~~~~~ 116 (124)
+|.. .-+.|+..++.
T Consensus 92 ~~s~~qa~~sfksLv~~ 108 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQI 108 (122)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 4433 22345555543
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.83 E-value=2e-08 Score=68.18 Aligned_cols=67 Identities=33% Similarity=0.780 Sum_probs=61.1
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeEEeccc---ccceEeCCCceec---ccccccCCCcCCHHHHHHHHHHhhcC
Q 040496 22 AGGVFLVTIHFPPDYPFKPPKVAFRTKV---FHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTD 88 (124)
Q Consensus 22 egg~f~~~i~fp~~yP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~ 88 (124)
.|+.+.+.|.+|+.||..||.|....+. +=|+|+.+|.+|+ ...-+.|.|.-.+.++|.+++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654 6799999999999 77779999999999999999999984
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.56 E-value=1.5e-07 Score=63.09 Aligned_cols=78 Identities=24% Similarity=0.583 Sum_probs=55.2
Q ss_pred cceEEEEEECCCCCCCCCCEE--EEEEeCCCCCCCCCCeeEEecccc-----cceEeCCCceecccccccCCC-cCCHHH
Q 040496 6 MFHWQATIMGPPDSPYAGGVF--LVTIHFPPDYPFKPPKVAFRTKVF-----HPNINSNGSICLDILKEQWSP-ALTISK 77 (124)
Q Consensus 6 l~~w~~~i~Gp~~tpyegg~f--~~~i~fp~~yP~~pP~v~f~t~i~-----Hpnv~~~G~icl~~l~~~W~p-~~~i~~ 77 (124)
+....++|.- .|+|..| .+.|.+|.+||.+||.+....... +.+||.+|+|.+..| ++|++ ..++.+
T Consensus 32 LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 4455566652 4888888 467778999999999998764322 449999999999988 88998 678999
Q ss_pred HHHHHHHhhcC
Q 040496 78 VLLSICSLLTD 88 (124)
Q Consensus 78 il~~i~~ll~~ 88 (124)
++..+.+.|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999988864
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00013 Score=56.29 Aligned_cols=72 Identities=22% Similarity=0.541 Sum_probs=58.1
Q ss_pred CCCCCCCEEE--EEEeCCCCCCCCCCeeEEecc-----cccceEeCCCceecccccccCCC-cCCHHHHHHHHHHhhcCC
Q 040496 18 DSPYAGGVFL--VTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILKEQWSP-ALTISKVLLSICSLLTDP 89 (124)
Q Consensus 18 ~tpyegg~f~--~~i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~p 89 (124)
-.+|.|..|. +.|-+.+.||..||.+..... -.|-+||.+|.|.|..| .+|.+ ++++..++..|.+.|.++
T Consensus 60 p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 60 PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAAFSED 138 (365)
T ss_pred cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHHHhcCC
Confidence 4578888776 666789999999999866432 23899999999999999 88996 567999999999998864
Q ss_pred C
Q 040496 90 N 90 (124)
Q Consensus 90 ~ 90 (124)
.
T Consensus 139 p 139 (365)
T KOG2391|consen 139 P 139 (365)
T ss_pred C
Confidence 3
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.25 E-value=0.049 Score=36.50 Aligned_cols=73 Identities=22% Similarity=0.443 Sum_probs=50.5
Q ss_pred EEC--CCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCce--ecccc--------------cccCCCcC-
Q 040496 13 IMG--PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI--CLDIL--------------KEQWSPAL- 73 (124)
Q Consensus 13 i~G--p~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~i--cl~~l--------------~~~W~p~~- 73 (124)
|.| .+.+.|....-.+.|.+|..||..+|.+.+..+-.... .+|.| |-+.. ...|+|..
T Consensus 29 i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D 106 (122)
T PF14462_consen 29 IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVD 106 (122)
T ss_pred EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCC
Confidence 444 44666999999999999999999999877665522111 12333 33221 25699987
Q ss_pred CHHHHHHHHHHhhc
Q 040496 74 TISKVLLSICSLLT 87 (124)
Q Consensus 74 ~i~~il~~i~~ll~ 87 (124)
+|.+.|..|...|.
T Consensus 107 ~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 107 DLWTHLARVEHALA 120 (122)
T ss_pred cHHHHHHHHHHHHh
Confidence 59999999988774
No 30
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.33 E-value=0.029 Score=39.34 Aligned_cols=61 Identities=34% Similarity=0.542 Sum_probs=48.5
Q ss_pred EEEeCCCCCCCCCCeeEEecccc---cceEeCC-----Cceecccc-cccCCCcCCHHHHHHHHHHhhcC
Q 040496 28 VTIHFPPDYPFKPPKVAFRTKVF---HPNINSN-----GSICLDIL-KEQWSPALTISKVLLSICSLLTD 88 (124)
Q Consensus 28 ~~i~fp~~yP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~ 88 (124)
+.|.|+.+||..+|.+.+....| +|++... ..+|+-.- -..|.+..++..+|..|...|.+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 56889999999999877765443 4777755 77998544 26799999999999999998874
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.15 E-value=0.06 Score=34.39 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=26.6
Q ss_pred eEEEEEEC--CCCCCCCCCEEEEEEeCCCCCCCCCCeeEEeccc
Q 040496 8 HWQATIMG--PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV 49 (124)
Q Consensus 8 ~w~~~i~G--p~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i 49 (124)
.+.+.+.+ ...+.-....+.+.+.||++||..+|.|...+..
T Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 31 SLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp EEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred ceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 44555521 2344455668999999999999999999876653
No 32
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=95.11 E-value=0.024 Score=38.91 Aligned_cols=65 Identities=23% Similarity=0.459 Sum_probs=30.9
Q ss_pred CCCCCCCCCCE----------EEEEEeCCCCCCCCCCeeEEecccc-cceEeCCCceeccccc-ccCC---CcCCHHHHH
Q 040496 15 GPPDSPYAGGV----------FLVTIHFPPDYPFKPPKVAFRTKVF-HPNINSNGSICLDILK-EQWS---PALTISKVL 79 (124)
Q Consensus 15 Gp~~tpyegg~----------f~~~i~fp~~yP~~pP~v~f~t~i~-Hpnv~~~G~icl~~l~-~~W~---p~~~i~~il 79 (124)
-+.||-+.|.+ |.+++.+|..||..||.|..-.--- -.-.+.+|+||++.-. .-|. |.+.|...|
T Consensus 56 n~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 56 NKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp -TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 35566666643 4566677999999999998643210 1234568999998653 4464 556666654
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.81 E-value=0.091 Score=33.28 Aligned_cols=27 Identities=15% Similarity=0.408 Sum_probs=22.6
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeEEecc
Q 040496 22 AGGVFLVTIHFPPDYPFKPPKVAFRTK 48 (124)
Q Consensus 22 egg~f~~~i~fp~~yP~~pP~v~f~t~ 48 (124)
....+.+.+.+|.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999987764
No 34
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.40 E-value=2.3 Score=28.86 Aligned_cols=65 Identities=23% Similarity=0.465 Sum_probs=40.3
Q ss_pred EEEEEECCCCCCCCCCE----------EEEEEeCCCCCCCCCCeeEEecccc-cceEeCCCceecc-cccccCCCcC
Q 040496 9 WQATIMGPPDSPYAGGV----------FLVTIHFPPDYPFKPPKVAFRTKVF-HPNINSNGSICLD-ILKEQWSPAL 73 (124)
Q Consensus 9 w~~~i~Gp~~tpyegg~----------f~~~i~fp~~yP~~pP~v~f~t~i~-Hpnv~~~G~icl~-~l~~~W~p~~ 73 (124)
|.-.=.-+.||-|-|.+ |.+++.+|-.||...|.|..-.--- ---.+..|+||+. ..+.-|....
T Consensus 53 wfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkplwarn~ 129 (167)
T KOG3357|consen 53 WFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNV 129 (167)
T ss_pred ceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchhhhhcC
Confidence 43333457788887754 4556667999999999987532110 1123457999995 3455675443
No 35
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=82.81 E-value=4.1 Score=31.86 Aligned_cols=60 Identities=27% Similarity=0.552 Sum_probs=41.6
Q ss_pred CCCCCEEEEEEeCCCCCCCCCCeeEEe-cccccceEeCCCceecccccccCCCcC--CHHHHHHHHHHh
Q 040496 20 PYAGGVFLVTIHFPPDYPFKPPKVAFR-TKVFHPNINSNGSICLDILKEQWSPAL--TISKVLLSICSL 85 (124)
Q Consensus 20 pyegg~f~~~i~fp~~yP~~pP~v~f~-t~i~Hpnv~~~G~icl~~l~~~W~p~~--~i~~il~~i~~l 85 (124)
||.|...+-.|.|...+|..||.+.|. ..-|+|... . +..| .+|++.- .+..++..+..+
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL~~~ 123 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISELRQL 123 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHHHHH
Confidence 588888888999999999999999996 334777421 1 1222 6798765 355555555443
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=75.97 E-value=4.1 Score=28.73 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=24.1
Q ss_pred eccccc---ceEeCCCceecccccccCCCcCCHHHHHHHHHHhhcC
Q 040496 46 RTKVFH---PNINSNGSICLDILKEQWSPALTISKVLLSICSLLTD 88 (124)
Q Consensus 46 ~t~i~H---pnv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~ 88 (124)
.|++|| +||..+|.||+.... .|.......+......+.+
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~ 131 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFN 131 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhC
Confidence 345555 599999999997642 2344334445555544443
No 37
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=70.40 E-value=7.6 Score=28.81 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=26.8
Q ss_pred ccccc---ceEeCCCceecccccccCCCcC-CHHHHHHHHHHhhcCC
Q 040496 47 TKVFH---PNINSNGSICLDILKEQWSPAL-TISKVLLSICSLLTDP 89 (124)
Q Consensus 47 t~i~H---pnv~~~G~icl~~l~~~W~p~~-~i~~il~~i~~ll~~p 89 (124)
|++|| +||..+|+||+.... .|.. ++.+ +....+.|.+-
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S 173 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSS 173 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCC
Confidence 44555 489999999997653 4544 5666 77777777653
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=68.95 E-value=5.3 Score=29.28 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=18.7
Q ss_pred EEEEEEeCCCCCCCCCCeeEE
Q 040496 25 VFLVTIHFPPDYPFKPPKVAF 45 (124)
Q Consensus 25 ~f~~~i~fp~~yP~~pP~v~f 45 (124)
.+.+.+.++.+||..+|.|.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cEEEEEEccCCCCCCCcceec
Confidence 688999999999999999943
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=67.18 E-value=9.8 Score=25.93 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=22.8
Q ss_pred CCCEEEEEEeCCCCCC-CCCCeeEEec
Q 040496 22 AGGVFLVTIHFPPDYP-FKPPKVAFRT 47 (124)
Q Consensus 22 egg~f~~~i~fp~~yP-~~pP~v~f~t 47 (124)
+.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4489999999999999 9999998763
No 40
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=66.02 E-value=15 Score=28.25 Aligned_cols=66 Identities=23% Similarity=0.532 Sum_probs=42.0
Q ss_pred CCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCC-cCCHHHHHHH
Q 040496 3 AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSP-ALTISKVLLS 81 (124)
Q Consensus 3 ~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p-~~~i~~il~~ 81 (124)
++++...+..+. ++ .....++|.++.+||.++|.+...-++ .+...|.+ ..++.+++.+
T Consensus 122 d~~ls~i~l~~~---D~---~R~H~l~l~l~~~yp~~~p~~~~~~P~--------------~~~~~w~~~~ssL~~v~~q 181 (291)
T PF09765_consen 122 DDDLSTIKLKIF---DS---SRQHYLELKLPSNYPFEPPSCSLDLPI--------------PFSLSWSPSQSSLKDVVQQ 181 (291)
T ss_dssp -CCCSEEEEEEE---TT---CEEEEEEEETTTTTTTSEEEECS-TTS---------------HHHHHHCHT-SHHHHHHH
T ss_pred CCCccEEEEEEE---cC---CceEEEEEEECCCCCCCCceeeCCCCc--------------chhhhhcccccCHHHHHHH
Confidence 455666666665 22 256778999999999999975433221 11246888 6678888777
Q ss_pred HHHhhcC
Q 040496 82 ICSLLTD 88 (124)
Q Consensus 82 i~~ll~~ 88 (124)
.+..+..
T Consensus 182 F~~~le~ 188 (291)
T PF09765_consen 182 FQEALES 188 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
No 41
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=65.40 E-value=11 Score=27.07 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.3
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeEEec
Q 040496 22 AGGVFLVTIHFPPDYPFKPPKVAFRT 47 (124)
Q Consensus 22 egg~f~~~i~fp~~yP~~pP~v~f~t 47 (124)
+.|.|.|+-.+|--||.++|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 55899999999999999999998874
No 42
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=59.21 E-value=17 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=22.5
Q ss_pred CCCEEEEEEeCCCCCC-----CCCCeeEEec
Q 040496 22 AGGVFLVTIHFPPDYP-----FKPPKVAFRT 47 (124)
Q Consensus 22 egg~f~~~i~fp~~yP-----~~pP~v~f~t 47 (124)
+.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 3488999999999999 8999998864
No 43
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=59.19 E-value=5.7 Score=28.65 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=27.2
Q ss_pred CCceecccccccCCCcCCHHHHHHHHHHhhcC
Q 040496 57 NGSICLDILKEQWSPALTISKVLLSICSLLTD 88 (124)
Q Consensus 57 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~ 88 (124)
.+.+|++++.+.|+|.+|+.+.+.-++.++.+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 57799999999999999999888777776654
No 44
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=58.63 E-value=34 Score=20.37 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=34.4
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
.|+.++..-++...+..+|...+.+--+.|...+-+.+.++|.
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667789999999999999999888888887764
No 45
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.16 E-value=25 Score=30.80 Aligned_cols=38 Identities=18% Similarity=0.443 Sum_probs=25.8
Q ss_pred EEEEECCCCCCCCCC-EEEEEEeCCCCCCCC-CCeeEEecc
Q 040496 10 QATIMGPPDSPYAGG-VFLVTIHFPPDYPFK-PPKVAFRTK 48 (124)
Q Consensus 10 ~~~i~Gp~~tpyegg-~f~~~i~fp~~yP~~-pP~v~f~t~ 48 (124)
.+.+.||-..- .|- ..++.|.||.+||.+ +|.++|..+
T Consensus 452 tvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 452 TVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred EEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 44555554332 333 347889999999985 799999865
No 46
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=50.29 E-value=38 Score=27.01 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=25.8
Q ss_pred Ee-CCCceecccc---cccCCCcC--CHHHHHHHHHHh
Q 040496 54 IN-SNGSICLDIL---KEQWSPAL--TISKVLLSICSL 85 (124)
Q Consensus 54 v~-~~G~icl~~l---~~~W~p~~--~i~~il~~i~~l 85 (124)
|+ .+|+||..+= -+...|.. +|.+++..|.++
T Consensus 332 VHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 332 VHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred ccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 44 3999999764 26788876 899999999998
No 47
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=48.99 E-value=25 Score=27.55 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=21.1
Q ss_pred CEEEEEEeCCCCCCCCCCeeEEecc
Q 040496 24 GVFLVTIHFPPDYPFKPPKVAFRTK 48 (124)
Q Consensus 24 g~f~~~i~fp~~yP~~pP~v~f~t~ 48 (124)
-.|-+.|.+|..||...|.++|.+-
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEee
Confidence 3467888899999999999998763
No 48
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=48.52 E-value=64 Score=19.94 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=30.3
Q ss_pred ceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEeccccc
Q 040496 7 FHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 51 (124)
Q Consensus 7 ~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~H 51 (124)
.+|.+-|.|+.+.....-+=++...+.+.|+. |...+..+-|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 58999999988876666777888999999986 66666666443
No 49
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=44.66 E-value=43 Score=26.13 Aligned_cols=48 Identities=23% Similarity=0.474 Sum_probs=30.8
Q ss_pred EEEEEECCCCCCCCCCEEE-EEEeC-----CCCCCCCCCeeEEecccccceEeCC
Q 040496 9 WQATIMGPPDSPYAGGVFL-VTIHF-----PPDYPFKPPKVAFRTKVFHPNINSN 57 (124)
Q Consensus 9 w~~~i~Gp~~tpyegg~f~-~~i~f-----p~~yP~~pP~v~f~t~i~Hpnv~~~ 57 (124)
-...+-|.+.. |+.|.+. +...| .++=+..-|+|.|.-.+|||||-..
T Consensus 273 ~~l~Vg~E~q~-w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 273 CELVVGGEPQC-WAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred ceEEEcCcccc-ccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccc
Confidence 34455554444 6555543 33433 3444567899999999999999754
No 50
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=44.50 E-value=36 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCCEEEEEEeCCCCCCC-----CCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYPF-----KPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP~-----~pP~v~f~ 46 (124)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 45889999999999998 88888765
No 51
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=43.60 E-value=39 Score=24.18 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.7
Q ss_pred CCEEEEEEeCCCCCCC-----CCCeeEEe
Q 040496 23 GGVFLVTIHFPPDYPF-----KPPKVAFR 46 (124)
Q Consensus 23 gg~f~~~i~fp~~yP~-----~pP~v~f~ 46 (124)
.|.|.|+-.+|-.||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999995 77777654
No 52
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=41.91 E-value=75 Score=18.86 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=30.7
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
.|+.++..-++...+.+++..++.+=-+.|...+-..+.+.|+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777778888899999999999888899888887777663
No 53
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=39.82 E-value=72 Score=19.55 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=26.4
Q ss_pred CCccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 93 DPLVPEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 93 ~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
.|-+.+|...|++-.++.++..+++.++|.
T Consensus 25 HP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 25 HPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578899999999999999999999988874
No 54
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=39.64 E-value=46 Score=25.22 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=26.5
Q ss_pred CCccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 93 DPLVPEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 93 ~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
...+.+|+..|.++++.|.+.+.+.+++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 457889999999999999999999998764
No 55
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=38.93 E-value=32 Score=29.01 Aligned_cols=29 Identities=34% Similarity=0.839 Sum_probs=24.8
Q ss_pred CCCCCCEEEEEEeCCCCCCC---CCCeeEEecc
Q 040496 19 SPYAGGVFLVTIHFPPDYPF---KPPKVAFRTK 48 (124)
Q Consensus 19 tpyegg~f~~~i~fp~~yP~---~pP~v~f~t~ 48 (124)
+||.=|.|-+.+ +|++||+ +-|-++|+|+
T Consensus 248 GpY~WgryDllv-lPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDLLV-LPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceEEE-ecCCCCcccccCcceeeecc
Confidence 578889998855 7999996 6799999997
No 56
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=37.27 E-value=36 Score=24.99 Aligned_cols=55 Identities=29% Similarity=0.554 Sum_probs=42.0
Q ss_pred CCCCeeEEecccccceEe--CCCceecccccccC--CCcCCHHHHHHHHHHhhcCCCCC
Q 040496 38 FKPPKVAFRTKVFHPNIN--SNGSICLDILKEQW--SPALTISKVLLSICSLLTDPNPD 92 (124)
Q Consensus 38 ~~pP~v~f~t~i~Hpnv~--~~G~icl~~l~~~W--~p~~~i~~il~~i~~ll~~p~~~ 92 (124)
..||.|-|-.+.|.-.|| +.|-|--.+...+| .|+.++.+-|..|..++-.|+-+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 478999999999998888 35555445555555 58889999999999999887543
No 57
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=35.92 E-value=56 Score=25.07 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=21.3
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEec
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFRT 47 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~t 47 (124)
+.|.|.|+-..|.-|| ..||.|.|.-
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 4588999999999997 6788887763
No 58
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=35.83 E-value=39 Score=21.92 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=16.9
Q ss_pred ceEEEEEECCCCCCCCCCEEEE
Q 040496 7 FHWQATIMGPPDSPYAGGVFLV 28 (124)
Q Consensus 7 ~~w~~~i~Gp~~tpyegg~f~~ 28 (124)
.+|.|.|=| +..|+|-.|.|
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred CceEEEecC--CeeeecceEEE
Confidence 479999987 67899999887
No 59
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=35.40 E-value=73 Score=22.13 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.2
Q ss_pred EEEEEECCCCCCCCCCEEEEEEeCCCC
Q 040496 9 WQATIMGPPDSPYAGGVFLVTIHFPPD 35 (124)
Q Consensus 9 w~~~i~Gp~~tpyegg~f~~~i~fp~~ 35 (124)
.|+.++|++...-||..+.+++.|-+.
T Consensus 105 yHvMlm~lK~pl~eGd~v~vtL~f~~~ 131 (151)
T COG2847 105 YHVMLMGLKKPLKEGDKVPVTLKFEKA 131 (151)
T ss_pred EEEEEeccCCCccCCCEEEEEEEEecC
Confidence 699999999999999999999998654
No 60
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=34.65 E-value=53 Score=25.64 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=21.9
Q ss_pred CEEEEEEeCCCCCCCCCCeeEEecc
Q 040496 24 GVFLVTIHFPPDYPFKPPKVAFRTK 48 (124)
Q Consensus 24 g~f~~~i~fp~~yP~~pP~v~f~t~ 48 (124)
-.+.+.+..+..||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4577889999999999999998876
No 61
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=33.13 E-value=83 Score=24.67 Aligned_cols=39 Identities=36% Similarity=0.695 Sum_probs=28.4
Q ss_pred eEEEEEECCCCC-CCCCCEEEEEEe---CCCCCCCCCCeeEEec
Q 040496 8 HWQATIMGPPDS-PYAGGVFLVTIH---FPPDYPFKPPKVAFRT 47 (124)
Q Consensus 8 ~w~~~i~Gp~~t-pyegg~f~~~i~---fp~~yP~~pP~v~f~t 47 (124)
+|+..+.|-.++ -|++|.+++++. |..-+ .+.|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeE
Confidence 689999997766 788999988775 33333 3556999854
No 62
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=33.00 E-value=1e+02 Score=19.14 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=19.6
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHh
Q 040496 98 EIAHMYKSDKAKYEATARSWTQKY 121 (124)
Q Consensus 98 ~a~~~~~~~~~~f~~~~~~~~~k~ 121 (124)
+...++++|+++|.+..++..+..
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~ 31 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEM 31 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHH
Confidence 567888999999999888877653
No 63
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=32.74 E-value=68 Score=24.51 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=21.1
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~ 46 (124)
+.|.|.|+-..|.-|| ..||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 4589999999999998 478888776
No 64
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=31.29 E-value=1.3e+02 Score=18.88 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=21.8
Q ss_pred CCCCEEEEEEeCCCCCCCCCCeeEEecc
Q 040496 21 YAGGVFLVTIHFPPDYPFKPPKVAFRTK 48 (124)
Q Consensus 21 yegg~f~~~i~fp~~yP~~pP~v~f~t~ 48 (124)
-||.-+.|...-|+.|| .|.|...+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 47888899998899999 589988865
No 65
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=30.25 E-value=61 Score=20.79 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=21.7
Q ss_pred eEEEEEECCCCCCCCCCEEEEEEeCCC
Q 040496 8 HWQATIMGPPDSPYAGGVFLVTIHFPP 34 (124)
Q Consensus 8 ~w~~~i~Gp~~tpyegg~f~~~i~fp~ 34 (124)
-.|+.+.|++..+=+|..+.+.+.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 368999999999899999999998864
No 66
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=30.01 E-value=81 Score=24.18 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=20.6
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~ 46 (124)
+.|.|.|+-..|.-|| ..||.|.|.
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 4588999999999996 577888775
No 67
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=29.20 E-value=1.3e+02 Score=22.72 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=31.7
Q ss_pred CCcceEEEEEECCCCCCCCCC----EEEEEEeC-----CCCCCCCCCeeEEecccc
Q 040496 4 EDMFHWQATIMGPPDSPYAGG----VFLVTIHF-----PPDYPFKPPKVAFRTKVF 50 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpyegg----~f~~~i~f-----p~~yP~~pP~v~f~t~i~ 50 (124)
.|..-|++.... .+|--..| .|+.++.+ ..+-|+++|+|+.+++-|
T Consensus 100 KDp~PWkl~YrV-~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRV-EDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEe-ecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 456668887773 45544333 45566665 468899999999998755
No 68
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=28.57 E-value=90 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.588 Sum_probs=20.5
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~ 46 (124)
+.|.|.|+-..|..|| ..||.|.|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 4588999999998887 578888776
No 69
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.51 E-value=98 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.627 Sum_probs=20.8
Q ss_pred CCCEEEEEEeCCCCCCC-------CCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYPF-------KPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP~-------~pP~v~f~ 46 (124)
+.|.|.|.-..|--||. .||.|.|.
T Consensus 121 ~~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 121 DDGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 35899999999999964 78888775
No 70
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=27.10 E-value=1e+02 Score=23.11 Aligned_cols=25 Identities=28% Similarity=0.696 Sum_probs=20.4
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~ 46 (124)
+.|.|.|+-..|..|| ..||.|.|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 4689999999999997 467888775
No 71
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=27.06 E-value=1e+02 Score=22.75 Aligned_cols=25 Identities=24% Similarity=0.640 Sum_probs=21.0
Q ss_pred CCCEEEEEEeCCCCCCC-------CCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYPF-------KPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP~-------~pP~v~f~ 46 (124)
+.|.|.|.-..|-.||. .||.|.|.
T Consensus 116 ~~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 116 SDGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 35899999999999975 88888774
No 72
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=26.98 E-value=1e+02 Score=18.54 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=25.0
Q ss_pred eEeCCCceecccccccCCCcCCHHHHHHHHHHhhcC
Q 040496 53 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTD 88 (124)
Q Consensus 53 nv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~ 88 (124)
.|+++|.|-+..+..-=-.+.|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 577899999999876666778888888888777765
No 73
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=26.30 E-value=1.2e+02 Score=23.16 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCCCCCCEEEEEEeCCCCCCCCC--CeeEEecc
Q 040496 18 DSPYAGGVFLVTIHFPPDYPFKP--PKVAFRTK 48 (124)
Q Consensus 18 ~tpyegg~f~~~i~fp~~yP~~p--P~v~f~t~ 48 (124)
.+.+.|..|++.|..|.+||..- |.|.|+..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDG 47 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLDG 47 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEecc
Confidence 56799999999999999999877 99988753
No 74
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=25.95 E-value=79 Score=16.52 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhcCCCCCCCccHHHHHHH
Q 040496 76 SKVLLSICSLLTDPNPDDPLVPEIAHMY 103 (124)
Q Consensus 76 ~~il~~i~~ll~~p~~~~~~n~~a~~~~ 103 (124)
..|+..+++-|.+|+..+..-..|...+
T Consensus 4 ~~V~~G~KAal~NPnvSeeaK~~A~~~L 31 (36)
T PF10346_consen 4 NNVAGGYKAALHNPNVSEEAKQHAREKL 31 (36)
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHH
Confidence 4577888999999987755544444433
No 75
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=25.93 E-value=1.2e+02 Score=25.41 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=22.2
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 97 PEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 97 ~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
.|+.++..+|++.|.++|++...++.
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 57888888999999999999887753
No 76
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.13 E-value=91 Score=22.10 Aligned_cols=47 Identities=13% Similarity=0.271 Sum_probs=34.0
Q ss_pred CCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHh
Q 040496 69 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 121 (124)
Q Consensus 69 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 121 (124)
|..-..+..+...|...|.+-+++ -+..|++|.+.|.++.++.-+++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~l~~l~~~~ 157 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDPS------EQEEYKENLRVFLAKLNKLLREW 157 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888889999998875543 35577888888887776655443
No 77
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.56 E-value=1.3e+02 Score=22.68 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=35.9
Q ss_pred CCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 69 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 69 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
|.....+..+...|..-|..-++ +-+..|++|.++|.++.++.-+++.
T Consensus 124 Wldp~n~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~L~~l~~~~~ 171 (286)
T cd01019 124 WLSPENAAEVAQAVAEKLSALDP------DNAATYAANLEAFNARLAELDATIK 171 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCc------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77667788888999998876443 3456888899999988877666553
No 78
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=24.14 E-value=32 Score=22.52 Aligned_cols=19 Identities=37% Similarity=0.805 Sum_probs=15.4
Q ss_pred CCceecccccccCCCcCCH
Q 040496 57 NGSICLDILKEQWSPALTI 75 (124)
Q Consensus 57 ~G~icl~~l~~~W~p~~~i 75 (124)
.|.+|.-.+.++|+|.+++
T Consensus 50 Gg~~CC~~~p~~W~pg~tv 68 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTV 68 (118)
T ss_pred CceEEEEEcCCCCCCCCEE
Confidence 5667888888999999874
No 79
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=23.96 E-value=95 Score=25.94 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=22.3
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 97 PEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 97 ~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
.|+..+..+|++.|.++|++...++.
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 57888889999999999999887654
No 80
>PRK05414 urocanate hydratase; Provisional
Probab=23.63 E-value=97 Score=25.98 Aligned_cols=26 Identities=15% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 97 PEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 97 ~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
.|+..+..+|++.|.++|++...++.
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 57888889999999999999887754
No 81
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=23.25 E-value=1.4e+02 Score=17.19 Aligned_cols=22 Identities=5% Similarity=0.209 Sum_probs=18.7
Q ss_pred CccHHHHHHHHHCHHHHHHHHH
Q 040496 94 PLVPEIAHMYKSDKAKYEATAR 115 (124)
Q Consensus 94 ~~n~~a~~~~~~~~~~f~~~~~ 115 (124)
..|++.+++..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 4688999999999999987654
No 82
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=22.71 E-value=1.4e+02 Score=16.08 Aligned_cols=27 Identities=19% Similarity=0.043 Sum_probs=17.6
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 97 PEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 97 ~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
.+|...+.+=+---.+++|.-+.+||.
T Consensus 3 ~eA~~~L~~iP~fvR~~~r~~~E~~Ar 29 (45)
T PF08369_consen 3 DEAEARLDRIPFFVRKKLRDAAEKYAR 29 (45)
T ss_dssp HHHHHHHCTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 345555555566566788888888874
No 83
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.15 E-value=1.3e+02 Score=21.02 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=25.2
Q ss_pred eEeCCCceecccccccCCCcCCHHHHHHHHHHhh
Q 040496 53 NINSNGSICLDILKEQWSPALTISKVLLSICSLL 86 (124)
Q Consensus 53 nv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll 86 (124)
-|+++|.|..-. .++++.-+...+|..|+.+.
T Consensus 125 vId~dG~I~~~~--~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 125 VIDPDGKIRYVW--RKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred EECCCCeEEEEe--cCCCCcccHHHHHHHHHHhc
Confidence 577889988765 67788888999998887753
No 84
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=21.90 E-value=75 Score=18.32 Aligned_cols=18 Identities=11% Similarity=0.455 Sum_probs=11.1
Q ss_pred ccCCCcCCHHHHHHHHHH
Q 040496 67 EQWSPALTISKVLLSICS 84 (124)
Q Consensus 67 ~~W~p~~~i~~il~~i~~ 84 (124)
=+|.|.++|.+++...-.
T Consensus 36 LgW~p~~~L~~~i~~~w~ 53 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWN 53 (62)
T ss_dssp C----SSSHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHH
Confidence 379999999999876554
No 85
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.79 E-value=1.5e+02 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=20.4
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEec
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFRT 47 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~t 47 (124)
+.|.|.|+-..|..|| ..||.|.|.-
T Consensus 155 ~~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 198 (256)
T cd03458 155 EDGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFMV 198 (256)
T ss_pred CCCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEEE
Confidence 3488999999999886 5788887763
No 86
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.10 E-value=1.1e+02 Score=20.78 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=14.9
Q ss_pred CCcceEEEEEECCCCCCCC
Q 040496 4 EDMFHWQATIMGPPDSPYA 22 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpye 22 (124)
.|...|.|.+.|+.||+..
T Consensus 45 Gd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 45 GDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred CCCcceEEEEECCCCccee
Confidence 5677789999998887664
No 87
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=20.87 E-value=1.2e+02 Score=16.30 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.6
Q ss_pred HCHHHHHHHHHHHHHHhcC
Q 040496 105 SDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 105 ~~~~~f~~~~~~~~~k~a~ 123 (124)
.|+-.|.++++..+.+|..
T Consensus 13 ~Dp~~yi~~i~~~~~~yGi 31 (42)
T smart00545 13 KDPLAYISKIRPQAEKYGI 31 (42)
T ss_pred HCHHHHHHHHHHHHhhCCE
Confidence 4888999999998888753
No 88
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=20.79 E-value=1.9e+02 Score=16.82 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=25.3
Q ss_pred CccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 94 PLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 94 ~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
.++.+++..+.++-+.+.+.+-+-+.+|+.
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~~ 48 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFMR 48 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999998888888887763
Done!