Query 040496
Match_columns 124
No_of_seqs 145 out of 1039
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:26:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 1.6E-48 5.6E-53 269.3 15.8 124 1-124 28-151 (151)
2 2c2v_B Ubiquitin-conjugating e 100.0 1.2E-48 3.9E-53 270.9 13.5 124 1-124 29-152 (154)
3 2r0j_A Ubiquitin carrier prote 100.0 1.5E-48 5.3E-53 268.9 14.0 124 1-124 25-148 (149)
4 2bep_A Ubiquitin-conjugating e 100.0 7.3E-48 2.5E-52 268.1 15.7 124 1-124 35-159 (159)
5 2ayv_A Ubiquitin-conjugating e 100.0 7.3E-48 2.5E-52 269.7 15.6 122 1-122 45-166 (166)
6 1z2u_A Ubiquitin-conjugating e 100.0 6E-48 2.1E-52 266.2 14.5 123 1-123 28-150 (150)
7 2c4o_A Ubiquitin-conjugating e 100.0 9.8E-48 3.4E-52 268.9 15.6 123 1-123 43-165 (165)
8 1fxt_A Ubiquitin-conjugating e 100.0 4.3E-48 1.5E-52 266.7 13.1 122 2-123 26-149 (149)
9 1zdn_A Ubiquitin-conjugating e 100.0 9.2E-48 3.2E-52 267.3 13.5 122 1-122 37-158 (158)
10 2aak_A UBC1, ubiquitin conjuga 100.0 1.7E-47 5.8E-52 264.5 14.7 123 1-123 28-150 (152)
11 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.3E-47 4.3E-52 269.2 14.2 123 1-123 28-150 (169)
12 1yh2_A HSPC150 protein similar 100.0 3.9E-47 1.3E-51 266.7 15.8 124 1-124 28-155 (169)
13 1jat_A Ubiquitin-conjugating e 100.0 8.1E-48 2.8E-52 266.9 11.8 124 1-124 29-152 (155)
14 3h8k_A Ubiquitin-conjugating e 100.0 7.3E-47 2.5E-51 264.1 15.8 123 2-124 28-164 (164)
15 3k9o_A Ubiquitin-conjugating e 100.0 7.8E-47 2.7E-51 271.6 15.7 124 1-124 32-156 (201)
16 2e2c_A Ubiquitin conjugating e 100.0 8.7E-47 3E-51 261.9 14.7 122 1-123 33-154 (156)
17 2f4z_A Tgtwinscan_2721 - E2 do 100.0 7E-47 2.4E-51 270.2 14.6 123 2-124 70-193 (193)
18 3bzh_A Ubiquitin-conjugating e 100.0 1.3E-46 4.3E-51 269.1 15.7 123 1-123 72-194 (194)
19 2pwq_A Ubiquitin conjugating e 100.0 8.1E-47 2.8E-51 273.8 14.0 124 1-124 47-171 (216)
20 2ucz_A UBC7, ubiquitin conjuga 100.0 2E-46 6.7E-51 262.2 14.5 120 4-123 32-164 (165)
21 2onu_A Ubiquitin-conjugating e 100.0 6.7E-47 2.3E-51 261.5 11.9 124 1-124 23-148 (152)
22 3rcz_B SUMO-conjugating enzyme 100.0 2.2E-46 7.6E-51 261.5 14.1 119 5-123 43-163 (163)
23 2gjd_A Ubiquitin-conjugating e 100.0 3.2E-46 1.1E-50 259.4 14.4 120 4-123 36-157 (157)
24 1i7k_A Ubiquitin-conjugating e 100.0 1.9E-46 6.6E-51 265.2 12.8 123 1-124 54-176 (179)
25 2grr_A Ubiquitin-conjugating e 100.0 4.5E-46 1.5E-50 259.5 14.5 121 4-124 39-161 (161)
26 1wzv_A Ubiquitin-conjugating e 100.0 5.2E-46 1.8E-50 257.8 13.5 122 1-123 29-151 (155)
27 3e46_A Ubiquitin-conjugating e 100.0 1.1E-45 3.9E-50 273.1 15.7 124 1-124 84-208 (253)
28 3fn1_B NEDD8-conjugating enzym 100.0 2.9E-45 1E-49 256.7 15.3 121 2-123 40-167 (167)
29 2y9m_A Ubiquitin-conjugating e 100.0 5.7E-45 1.9E-49 256.4 15.5 122 2-123 43-168 (172)
30 1yf9_A Ubiquitin carrier prote 100.0 1.8E-45 6.1E-50 258.7 12.2 122 2-123 33-156 (171)
31 2z5d_A Ubiquitin-conjugating e 100.0 1.3E-45 4.5E-50 260.8 11.3 120 4-123 48-169 (179)
32 1tte_A Ubiquitin-conjugating e 100.0 8E-46 2.7E-50 268.4 10.3 124 1-124 26-151 (215)
33 1c4z_D UBCH7, ubiquitin conjug 100.0 2E-45 7E-50 254.5 11.3 122 2-124 28-150 (154)
34 1y8x_A Ubiquitin-conjugating e 100.0 1.8E-44 6.1E-49 251.3 14.7 119 1-120 29-147 (160)
35 3rz3_A Ubiquitin-conjugating e 100.0 1.6E-44 5.4E-49 256.3 14.0 123 1-123 32-173 (183)
36 1yrv_A Ubiquitin-conjugating l 100.0 1.7E-44 5.8E-49 253.3 12.5 119 1-120 47-168 (169)
37 2nvu_C NEDD8-conjugating enzym 100.0 4.8E-44 1.6E-48 253.2 14.1 119 1-120 49-167 (180)
38 2awf_A Ubiquitin-conjugating e 100.0 4.5E-44 1.6E-48 251.8 10.9 114 4-117 45-172 (172)
39 4ddg_A Ubiquitin-conjugating e 100.0 2.7E-43 9.2E-48 275.0 14.6 124 1-124 27-150 (399)
40 3o2u_A NEDD8-conjugating enzym 100.0 7.4E-43 2.5E-47 248.9 13.4 120 1-121 55-177 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.4E-40 4.8E-45 233.0 11.3 115 2-116 45-164 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 1.1E-39 3.6E-44 247.6 11.2 122 2-123 105-243 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 7.6E-39 2.6E-43 221.9 7.0 101 5-106 53-156 (156)
44 2fo3_A Ubiquitin-conjugating e 100.0 3.4E-37 1.2E-41 206.7 10.5 92 1-92 30-122 (125)
45 2a4d_A Ubiquitin-conjugating e 100.0 6.6E-37 2.2E-41 212.9 9.8 95 6-100 58-156 (160)
46 2h2y_A Ubiquitin-conjugating e 100.0 1.8E-36 6.3E-41 205.8 11.0 91 1-91 44-135 (136)
47 1jat_B Ubiquitin-conjugating e 100.0 8.5E-38 2.9E-42 212.8 4.0 98 5-103 38-138 (138)
48 2a7l_A Hypothetical ubiquitin- 100.0 8.1E-36 2.8E-40 202.6 10.9 87 1-87 48-136 (136)
49 2hlw_A Ubiquitin-conjugating e 100.0 1.5E-36 5E-41 213.0 7.3 96 5-100 67-166 (170)
50 2f4w_A Ubiquitin-conjugating e 100.0 4.2E-34 1.4E-38 203.3 11.6 113 1-115 38-156 (187)
51 1zuo_A Hypothetical protein LO 100.0 9.6E-36 3.3E-40 211.5 -0.4 114 1-122 54-181 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.5E-25 5E-30 154.9 1.7 79 2-80 51-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 2E-20 6.8E-25 129.8 8.3 89 4-93 58-161 (162)
54 3kpa_A Probable ubiquitin fold 99.7 1.6E-17 5.6E-22 112.7 1.8 63 7-72 58-131 (168)
55 3obq_A Tumor susceptibility ge 99.6 4.7E-16 1.6E-20 106.1 7.1 80 3-88 50-138 (146)
56 2ebm_A RWD domain-containing p 96.2 0.037 1.3E-06 35.7 8.3 25 23-47 54-78 (128)
57 2daw_A RWD domain containing p 95.0 0.11 3.7E-06 34.9 7.1 24 25-48 76-99 (154)
58 2ebk_A RWD domain-containing p 94.2 0.28 9.6E-06 31.5 7.5 39 7-46 40-78 (128)
59 2yz0_A Serine/threonine-protei 94.2 0.2 6.8E-06 32.7 6.8 42 6-48 45-86 (138)
60 2day_A Ring finger protein 25; 93.6 0.22 7.7E-06 31.9 6.1 25 24-48 59-83 (128)
61 1ukx_A GCN2, GCN2 EIF2alpha ki 92.4 0.092 3.1E-06 34.2 2.9 24 24-47 63-86 (137)
62 2dax_A Protein C21ORF6; RWD do 92.4 0.36 1.2E-05 32.1 5.9 24 25-48 74-97 (152)
63 3zqs_A E3 ubiquitin-protein li 91.9 0.63 2.2E-05 32.4 6.8 66 4-88 23-88 (186)
64 2cwb_A Chimera of immunoglobul 88.0 0.097 3.3E-06 33.4 0.0 35 89-123 21-55 (108)
65 1zoq_C CREB-binding protein, i 58.3 6.8 0.00023 20.8 2.0 44 79-123 3-46 (47)
66 1kbh_B CREB-binding protein, n 48.3 34 0.0012 19.0 5.0 46 78-124 9-54 (59)
67 2bum_A Protocatechuate 3,4-dio 45.6 21 0.00072 25.0 3.6 27 21-47 108-139 (209)
68 2cu9_A Spcia1, histone chapero 43.6 43 0.0015 22.5 4.7 40 2-42 34-86 (161)
69 1h3o_B Transcription initiatio 35.9 47 0.0016 19.4 3.5 42 82-123 11-52 (76)
70 3rls_A YAF9, protein AF-9 homo 33.6 1.1E+02 0.0038 20.7 6.3 45 4-50 30-74 (175)
71 2k6w_A Putative uncharacterize 30.0 53 0.0018 20.7 3.3 26 9-34 82-107 (120)
72 2bum_B Protocatechuate 3,4-dio 29.8 32 0.0011 24.7 2.4 27 21-47 133-166 (241)
73 2yzh_A Probable thiol peroxida 29.2 38 0.0013 21.6 2.6 34 53-86 138-171 (171)
74 1roc_A Anti-silencing protein 29.1 95 0.0032 20.7 4.5 28 7-34 39-79 (155)
75 4g2e_A Peroxiredoxin; redox pr 28.3 59 0.002 20.6 3.4 33 53-85 124-156 (157)
76 3t63_M 3,4-PCD, protocatechuat 27.8 36 0.0012 24.3 2.4 25 22-46 133-164 (238)
77 2jrw_A Cyclic extended PEP.1; 27.6 19 0.00067 16.2 0.6 15 38-52 5-19 (26)
78 2xsu_A Catechol 1,2 dioxygenas 27.4 36 0.0012 25.4 2.4 25 22-46 187-229 (312)
79 1tmx_A Hydroxyquinol 1,2-dioxy 27.1 37 0.0012 25.1 2.4 26 21-46 182-225 (293)
80 2azq_A Catechol 1,2-dioxygenas 27.0 36 0.0012 25.3 2.4 25 22-46 183-225 (311)
81 3n9t_A PNPC; phospholipid bind 26.8 37 0.0013 25.0 2.4 25 22-46 180-222 (290)
82 3t63_A 3,4-PCD, protocatechuat 26.5 44 0.0015 23.2 2.6 23 24-46 102-129 (200)
83 2boy_A 3-chlorocatechol 1,2-di 25.6 41 0.0014 24.3 2.4 25 22-46 153-195 (254)
84 2hue_A Anti-silencing protein 25.1 1.4E+02 0.0048 20.3 4.9 33 7-39 44-89 (175)
85 2jsy_A Probable thiol peroxida 25.0 60 0.0021 20.4 3.0 34 53-86 133-166 (167)
86 3th1_A Chlorocatechol 1,2-diox 24.7 65 0.0022 23.3 3.3 25 22-46 150-192 (260)
87 1dmh_A 1,2-CTD, catechol 1,2-d 24.5 43 0.0015 24.9 2.4 25 22-46 186-228 (311)
88 3hhy_A 1,2-CTD, catechol 1,2-d 24.5 41 0.0014 24.7 2.2 25 22-46 182-224 (280)
89 2f4m_B UV excision repair prot 24.2 82 0.0028 17.5 3.0 20 95-114 37-56 (61)
90 4gqc_A Thiol peroxidase, perox 24.0 86 0.0029 20.1 3.6 35 53-87 126-160 (164)
91 1x9l_A CUI-DR1885; copper bind 24.0 69 0.0023 21.0 3.1 27 9-35 107-133 (149)
92 3s7v_A Major capsid protein VP 23.8 1.4E+02 0.0047 21.7 4.8 41 19-62 197-239 (277)
93 2idc_A Anti-silencing protein 23.5 1.3E+02 0.0046 20.5 4.5 28 7-34 40-80 (179)
94 1pve_A HHR23B, UV excision rep 22.3 81 0.0028 18.2 2.8 22 94-115 38-59 (72)
95 3keb_A Probable thiol peroxida 21.7 75 0.0026 22.2 3.1 47 53-99 142-188 (224)
96 1taf_B TFIID TBP associated fa 21.7 1.2E+02 0.0042 17.2 3.8 30 93-122 22-51 (70)
97 2fkn_A Urocanate hydratase; ro 21.2 1.1E+02 0.0038 24.5 4.2 26 97-122 278-303 (552)
98 1x87_A Urocanase protein; stru 21.1 1.1E+02 0.0038 24.5 4.2 26 97-122 277-302 (551)
99 1uwk_A Urocanate hydratase; hy 20.7 1.1E+02 0.0039 24.5 4.2 26 97-122 282-307 (557)
100 2kru_A Light-independent proto 20.3 1E+02 0.0035 17.3 2.9 28 96-123 7-34 (63)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.6e-48 Score=269.35 Aligned_cols=124 Identities=66% Similarity=1.236 Sum_probs=121.4
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|++||.
T Consensus 28 p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~ 107 (151)
T 4gpr_A 28 PVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLL 107 (151)
T ss_dssp ESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHH
T ss_pred EcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCCEEEcccccCCCCCCCcHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+.
T Consensus 108 ~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 108 SISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp HHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999974
No 2
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-48 Score=270.90 Aligned_cols=124 Identities=49% Similarity=0.946 Sum_probs=119.2
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 29 ~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~ 108 (154)
T 2c2v_B 29 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLL 108 (154)
T ss_dssp ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCHHHHTSCCTTCCHHHHHH
T ss_pred ECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCCeEEchhccCCCCCCCcHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 109 ~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 109 SIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp HHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999974
No 3
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.5e-48 Score=268.95 Aligned_cols=124 Identities=50% Similarity=0.961 Sum_probs=121.0
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 25 ~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~ 104 (149)
T 2r0j_A 25 PVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 104 (149)
T ss_dssp EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHH
T ss_pred ECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCEEechhcCCCCCCCCcHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 105 ~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 105 SIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp HHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999975
No 4
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=7.3e-48 Score=268.09 Aligned_cols=124 Identities=48% Similarity=0.912 Sum_probs=120.8
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeC-CCceecccccccCCCcCCHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL 79 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~W~p~~~i~~il 79 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|+++|.+||
T Consensus 35 ~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl 114 (159)
T 2bep_A 35 LVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL 114 (159)
T ss_dssp ECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHH
T ss_pred eCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhhccCCCCCcHHHHH
Confidence 45689999999999999999999999999999999999999999999999999994 99999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 80 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 80 ~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+|
T Consensus 115 ~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 115 LSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp HHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999986
No 5
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=7.3e-48 Score=269.72 Aligned_cols=122 Identities=80% Similarity=1.438 Sum_probs=119.7
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 45 ~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~ 124 (166)
T 2ayv_A 45 PVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLL 124 (166)
T ss_dssp ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHH
T ss_pred EcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCCCCeEEcccccccCCCCCcHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
+|+++|.+|++++|+|.+|+++|++|+++|+++||+|+++||
T Consensus 125 sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 125 SISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp HHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999998
No 6
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=6e-48 Score=266.21 Aligned_cols=123 Identities=80% Similarity=1.455 Sum_probs=120.2
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 28 ~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~ 107 (150)
T 1z2u_A 28 PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 107 (150)
T ss_dssp EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHH
T ss_pred ECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCCeEeeccccCCCCCCCCHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 108 ~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 108 SICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp HHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999996
No 7
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=9.8e-48 Score=268.87 Aligned_cols=123 Identities=81% Similarity=1.444 Sum_probs=120.5
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 43 p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~~G~ICl~iL~~~W~P~~ti~~vL~ 122 (165)
T 2c4o_A 43 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 122 (165)
T ss_dssp ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHH
T ss_pred EcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCCCCeEeehhhcCCCCCcCcHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+|+++|.+|++++|+|.+|+++|++|+++|+++||+|+++||+
T Consensus 123 si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 123 SICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp HHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999996
No 8
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=4.3e-48 Score=266.70 Aligned_cols=122 Identities=51% Similarity=1.014 Sum_probs=119.2
Q ss_pred CCC-CcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeC-CCceecccccccCCCcCCHHHHH
Q 040496 2 VAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL 79 (124)
Q Consensus 2 ~~~-dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~W~p~~~i~~il 79 (124)
.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|+++|.+||
T Consensus 26 ~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl 105 (149)
T 1fxt_A 26 VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSAL 105 (149)
T ss_dssp SSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHHHHTSCCTTCCHHHHH
T ss_pred CCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCcCCCCCCCCCcHHHHH
Confidence 445 9999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 80 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 80 ~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 106 ~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 106 ISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp HHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999996
No 9
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.2e-48 Score=267.34 Aligned_cols=122 Identities=42% Similarity=0.762 Sum_probs=119.6
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 37 ~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~ 116 (158)
T 1zdn_A 37 PNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLL 116 (158)
T ss_dssp ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHH
T ss_pred ECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCCCEEehhhcCCCCCCCCcHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||
T Consensus 117 ~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 117 TIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp HHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999998
No 10
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.7e-47 Score=264.48 Aligned_cols=123 Identities=45% Similarity=0.895 Sum_probs=120.3
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 28 ~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~ 107 (152)
T 2aak_A 28 PQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 107 (152)
T ss_dssp EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGTTSCCTTCCHHHHHH
T ss_pred eCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCCEEechhhcCCCCCCCcHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 108 ~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 108 SIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp HHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999996
No 11
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-47 Score=269.22 Aligned_cols=123 Identities=40% Similarity=0.850 Sum_probs=120.2
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 28 p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G~ICl~iL~~~WsP~~~i~~vL~ 107 (169)
T 1ayz_A 28 PLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILT 107 (169)
T ss_dssp EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHH
T ss_pred ecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCCeEeehhhccCCCCcCcHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+|++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 108 si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 108 SIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp HHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999996
No 12
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.9e-47 Score=266.73 Aligned_cols=124 Identities=44% Similarity=0.863 Sum_probs=120.8
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceeccccc----ccCCCcCCHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK----EQWSPALTIS 76 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~----~~W~p~~~i~ 76 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|. ++|+|+++|.
T Consensus 28 ~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~ 107 (169)
T 1yh2_A 28 QDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIA 107 (169)
T ss_dssp ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHH
T ss_pred eCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcCCeEecccccCCcccCCCCCCcHH
Confidence 457899999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 77 KVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 77 ~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+.
T Consensus 108 ~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 155 (169)
T 1yh2_A 108 TVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 155 (169)
T ss_dssp HHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999999974
No 13
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=8.1e-48 Score=266.88 Aligned_cols=124 Identities=48% Similarity=0.892 Sum_probs=120.7
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 29 ~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~ 108 (155)
T 1jat_A 29 PHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLL 108 (155)
T ss_dssp EETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHH
T ss_pred ECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCEEEchhhccCCCCCCCHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 109 ~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 109 SIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp HHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999963
No 14
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=7.3e-47 Score=264.12 Aligned_cols=123 Identities=38% Similarity=0.801 Sum_probs=119.2
Q ss_pred CCC-CcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceeccccc-------------c
Q 040496 2 VAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------E 67 (124)
Q Consensus 2 ~~~-dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~-------------~ 67 (124)
.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|+||+++|. +
T Consensus 28 ~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~ 107 (164)
T 3h8k_A 28 MNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAE 107 (164)
T ss_dssp SSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCC
T ss_pred CCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCCCcEeeecccCccccccccccccc
Confidence 444 99999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred cCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 68 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 68 ~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|+|++||++||.+|+++|.+|++++|+|.+|+++|++|+++|+++||+|++|++++
T Consensus 108 ~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~~~ 164 (164)
T 3h8k_A 108 RWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 164 (164)
T ss_dssp CCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999999999999999999999999999874
No 15
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=7.8e-47 Score=271.62 Aligned_cols=124 Identities=48% Similarity=0.912 Sum_probs=120.9
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeC-CCceecccccccCCCcCCHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL 79 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~W~p~~~i~~il 79 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|+++|.+||
T Consensus 32 ~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL 111 (201)
T 3k9o_A 32 LVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL 111 (201)
T ss_dssp ECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHH
T ss_pred ECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCeeeCcccccCCCCCCCHHHHH
Confidence 45789999999999999999999999999999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 80 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 80 ~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 112 ~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 112 LSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp HHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999975
No 16
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=8.7e-47 Score=261.94 Aligned_cols=122 Identities=39% Similarity=0.814 Sum_probs=119.0
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 33 p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~ 112 (156)
T 2e2c_A 33 PDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILL 112 (156)
T ss_dssp ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHH
T ss_pred ECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccCceEECccccccCCCCCcHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+|+++|.+|++++|+|.+|+++| +|+++|+++||+|+++||.
T Consensus 113 si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 113 SLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp HHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999 8999999999999999985
No 17
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=7e-47 Score=270.16 Aligned_cols=123 Identities=49% Similarity=0.957 Sum_probs=119.4
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEe-CCCceecccccccCCCcCCHHHHHH
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~-~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+ .+|.||+++|.++|+|+++|.+||.
T Consensus 70 ~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~ 149 (193)
T 2f4z_A 70 VGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALL 149 (193)
T ss_dssp ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHH
T ss_pred cCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999 5999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+.
T Consensus 150 sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya~~ 193 (193)
T 2f4z_A 150 SIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKE 193 (193)
T ss_dssp HHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999973
No 18
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.3e-46 Score=269.08 Aligned_cols=123 Identities=62% Similarity=1.171 Sum_probs=120.5
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 72 p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~ 151 (194)
T 3bzh_A 72 PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 151 (194)
T ss_dssp ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHH
T ss_pred cccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCCCceechhhhccCCCcCcHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+|++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 152 sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 152 SICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp HHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999996
No 19
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=8.1e-47 Score=273.83 Aligned_cols=124 Identities=51% Similarity=1.003 Sum_probs=120.6
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEe-CCCceecccccccCCCcCCHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVL 79 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~-~~G~icl~~l~~~W~p~~~i~~il 79 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+ .+|.||+++|.++|+|+++|.+||
T Consensus 47 p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL 126 (216)
T 2pwq_A 47 IKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTAL 126 (216)
T ss_dssp ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCHHHHH
T ss_pred EcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEEchhhcccCCCCCcHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 80 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 80 ~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
.+|++||.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 127 ~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 127 LSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp HHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999974
No 20
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=2e-46 Score=262.23 Aligned_cols=120 Identities=38% Similarity=0.843 Sum_probs=117.7
Q ss_pred CCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccc-------------cccCC
Q 040496 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWS 70 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l-------------~~~W~ 70 (124)
+|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++| .++|+
T Consensus 32 ~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~ 111 (165)
T 2ucz_A 32 NNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWS 111 (165)
T ss_dssp SCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCC
T ss_pred CCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCCCcEeehhhCCccccccccCCCCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999 68999
Q ss_pred CcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 71 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 71 p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++++.
T Consensus 112 p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 112 PVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLG 164 (165)
T ss_dssp TTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999975
No 21
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=6.7e-47 Score=261.54 Aligned_cols=124 Identities=33% Similarity=0.734 Sum_probs=119.7
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeC-CCceecccccccCCCcCCHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL 79 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~W~p~~~i~~il 79 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|+++|.+||
T Consensus 23 ~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~~i~~vl 102 (152)
T 2onu_A 23 LNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVF 102 (152)
T ss_dssp EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTCCHHHHH
T ss_pred EccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEecccccccCCCCCCHHHHH
Confidence 35689999999999999999999999999999999999999999999999999994 99999999999999999999999
Q ss_pred HH-HHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 80 LS-ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 80 ~~-i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
.+ |++||.+|++++|+|.+|+++|++|+++|+++||+|+++||++
T Consensus 103 ~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 103 EVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp HTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 99 6899999999999999999999999999999999999999974
No 22
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-46 Score=261.53 Aligned_cols=119 Identities=41% Similarity=0.865 Sum_probs=116.4
Q ss_pred CcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccc--cCCCcCCHHHHHHHH
Q 040496 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSI 82 (124)
Q Consensus 5 dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~--~W~p~~~i~~il~~i 82 (124)
|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.. +|+|+++|++||.+|
T Consensus 43 nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i 122 (163)
T 3rcz_B 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGI 122 (163)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHH
T ss_pred CccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999975 499999999999999
Q ss_pred HHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 83 CSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 83 ~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+++|.+|++++|+|.+|+++|++|+++|.++||+|++|||.
T Consensus 123 ~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 123 QDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp HHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999983
No 23
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3.2e-46 Score=259.36 Aligned_cols=120 Identities=37% Similarity=0.803 Sum_probs=117.6
Q ss_pred CCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccc--cCCCcCCHHHHHHH
Q 040496 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLS 81 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~--~W~p~~~i~~il~~ 81 (124)
+|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.. +|+|+++|.+||.+
T Consensus 36 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~ 115 (157)
T 2gjd_A 36 MDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLG 115 (157)
T ss_dssp EEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHH
T ss_pred CcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999976 79999999999999
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 82 ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 82 i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 116 i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 116 VQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp HHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999996
No 24
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-46 Score=265.20 Aligned_cols=123 Identities=34% Similarity=0.704 Sum_probs=119.2
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 54 p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~ 133 (179)
T 1i7k_A 54 PESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILL 133 (179)
T ss_dssp EETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHH
T ss_pred EcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccCCeEEcccCcCcCCCCCCHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|+++|.+|++++|+|.+|+++| +|+++|.++|++++++++++
T Consensus 134 sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 134 SIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp HHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999 99999999999999999875
No 25
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=4.5e-46 Score=259.54 Aligned_cols=121 Identities=37% Similarity=0.818 Sum_probs=117.9
Q ss_pred CCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccc--cCCCcCCHHHHHHH
Q 040496 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLS 81 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~--~W~p~~~i~~il~~ 81 (124)
+|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.. +|+|+++|.+||.+
T Consensus 39 ~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~ 118 (161)
T 2grr_A 39 MNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLG 118 (161)
T ss_dssp EEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHH
T ss_pred CCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999975 89999999999999
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 82 ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 82 i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 119 i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 119 IQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999985
No 26
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=5.2e-46 Score=257.77 Aligned_cols=122 Identities=34% Similarity=0.785 Sum_probs=119.4
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccc-cccCCCcCCHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVL 79 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l-~~~W~p~~~i~~il 79 (124)
|.++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++| .++|+|+++|.+||
T Consensus 29 ~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~~W~p~~~i~~vl 107 (155)
T 1wzv_A 29 SDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVL 107 (155)
T ss_dssp ECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBCCCGGGCTTTCCTTCCHHHHH
T ss_pred cCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCCCeEeecCCCccCCCCCCcHHHHH
Confidence 45789999999999 99999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 80 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 80 ~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 108 ~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 108 EALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp HHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999996
No 27
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=1.1e-45 Score=273.05 Aligned_cols=124 Identities=48% Similarity=0.912 Sum_probs=120.9
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeC-CCceecccccccCCCcCCHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL 79 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~W~p~~~i~~il 79 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|+++|.+||
T Consensus 84 p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL 163 (253)
T 3e46_A 84 LVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL 163 (253)
T ss_dssp ECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHH
T ss_pred ECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCeeecccccCCCCCCCCHHHHH
Confidence 46789999999999999999999999999999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 80 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 80 ~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 164 ~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 164 LSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp HHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999985
No 28
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=2.9e-45 Score=256.70 Aligned_cols=121 Identities=36% Similarity=0.659 Sum_probs=116.9
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccc------cCCCcCCH
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE------QWSPALTI 75 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~------~W~p~~~i 75 (124)
.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.. +|+|+++|
T Consensus 40 ~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i 118 (167)
T 3fn1_B 40 DPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTL 118 (167)
T ss_dssp SSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCH
T ss_pred CCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCCCCEEechhhccCCCCCCCCCCcCcH
Confidence 357899999999 89999999999999999999999999999999999999999999999999975 79999999
Q ss_pred HHHHHHHHHhhcC-CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 76 SKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 76 ~~il~~i~~ll~~-p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
++||.+|+++|.+ |++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 119 ~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 119 KDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp HHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999 69999999999999999999999999999999996
No 29
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=5.7e-45 Score=256.37 Aligned_cols=122 Identities=32% Similarity=0.720 Sum_probs=118.4
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEec-ccccceEe-CCCceeccccc-ccCCCcCCHHHH
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT-KVFHPNIN-SNGSICLDILK-EQWSPALTISKV 78 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t-~i~Hpnv~-~~G~icl~~l~-~~W~p~~~i~~i 78 (124)
.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.| ++|||||+ .+|.||+++|. ++|+|+++|.+|
T Consensus 43 ~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~v 122 (172)
T 2y9m_A 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122 (172)
T ss_dssp STTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHH
T ss_pred CCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHH
Confidence 4679999999999999999999999999999999999999999999 99999997 79999999998 899999999999
Q ss_pred HHHHHHhhcCCCCCCCccHHHHHHHHH-CHHHHHHHHHHHHHHhcC
Q 040496 79 LLSICSLLTDPNPDDPLVPEIAHMYKS-DKAKYEATARSWTQKYAM 123 (124)
Q Consensus 79 l~~i~~ll~~p~~~~~~n~~a~~~~~~-~~~~f~~~~~~~~~k~a~ 123 (124)
|.+|+++|.+|++++|+|.+|+++|++ |+++|.++||+|++++++
T Consensus 123 L~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~~~ 168 (172)
T 2y9m_A 123 VHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERER 168 (172)
T ss_dssp HHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 999999999999999874
No 30
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-45 Score=258.68 Aligned_cols=122 Identities=30% Similarity=0.749 Sum_probs=118.6
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEe-CCCceecccccccCCCcCCHHHHHH
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~-~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+ .+|.||+++|.++|+|+++|++||.
T Consensus 33 ~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~vL~ 112 (171)
T 1yf9_A 33 PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFD 112 (171)
T ss_dssp ECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHH
T ss_pred CCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEeccccccCCCCCCcHHHHHH
Confidence 368999999999999999999999999999999999999999999999999999 4999999999999999999999999
Q ss_pred HH-HHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 81 SI-CSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 81 ~i-~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+| ++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 113 sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 113 VFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp THHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 97 79999999999999999999999999999999999999996
No 31
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=260.80 Aligned_cols=120 Identities=36% Similarity=0.805 Sum_probs=118.0
Q ss_pred CCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeC-CCceecccccccCCCcCCHHHHHHH-
Q 040496 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS- 81 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~W~p~~~i~~il~~- 81 (124)
+|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|+++|.+||.+
T Consensus 48 ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~ 127 (179)
T 2z5d_A 48 GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESF 127 (179)
T ss_dssp EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTH
T ss_pred CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEeccccccCCCCCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 82 ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 82 i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
|++||.+|++++|+|.+|+++|++|+++|+++||+|+++||+
T Consensus 128 I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 128 LPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp HHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999996
No 32
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=8e-46 Score=268.45 Aligned_cols=124 Identities=49% Similarity=0.984 Sum_probs=119.2
Q ss_pred CCCC-CcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeC-CCceecccccccCCCcCCHHHH
Q 040496 1 PVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKV 78 (124)
Q Consensus 1 P~~~-dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~W~p~~~i~~i 78 (124)
|.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|++||.+|
T Consensus 26 p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~V 105 (215)
T 1tte_A 26 FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSA 105 (215)
T ss_dssp CCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCHHHH
T ss_pred ECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCEEECccCCCCCCCcCcHHHH
Confidence 3444 5679999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 79 LLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 79 l~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
|.+|++||.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 106 L~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 106 LISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp HHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999974
No 33
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=2e-45 Score=254.53 Aligned_cols=122 Identities=39% Similarity=0.920 Sum_probs=116.3
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceeccccc-ccCCCcCCHHHHHH
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLL 80 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~-~~W~p~~~i~~il~ 80 (124)
.++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|. ++|+|+++|.+||.
T Consensus 28 ~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~W~p~~~i~~vl~ 106 (154)
T 1c4z_D 28 DEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQ 106 (154)
T ss_dssp SCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCCTTTSSSSCCTTCCHHHHHH
T ss_pred CCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCEEECCCCCCCCCCCCCcHHHHHH
Confidence 4679999999998 999999999999999999999999999999999999999999999999996 89999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 107 ~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 107 SLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp HHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred HHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999974
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-44 Score=251.26 Aligned_cols=119 Identities=33% Similarity=0.724 Sum_probs=115.7
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 29 ~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~ 107 (160)
T 1y8x_A 29 SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIY 107 (160)
T ss_dssp SSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHH
T ss_pred ccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCCCeEEcccchhhccCCCCHHHHHH
Confidence 4678999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k 120 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||++++.
T Consensus 108 ~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 108 GLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp HHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999874
No 35
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1.6e-44 Score=256.29 Aligned_cols=123 Identities=36% Similarity=0.796 Sum_probs=117.7
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceeccccc-------------c
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------E 67 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~-------------~ 67 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|. +
T Consensus 32 ~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~ 111 (183)
T 3rz3_A 32 VDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSE 111 (183)
T ss_dssp CTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCTTSBBCCTTC--------------C
T ss_pred cCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCCCCcEehhhcCcccccccccccccC
Confidence 356899999999999999999999999999999999999999999999999999999999999996 8
Q ss_pred cCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHH------CHHHHHHHHHHHHHHhcC
Q 040496 68 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS------DKAKYEATARSWTQKYAM 123 (124)
Q Consensus 68 ~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~------~~~~f~~~~~~~~~k~a~ 123 (124)
+|+|+++|++||.+|+++|.+|++++|+|.+|+++|++ |+++|+++||++|++++.
T Consensus 112 ~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~v~~s~~ 173 (183)
T 3rz3_A 112 RWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKV 173 (183)
T ss_dssp CCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999 788999999999999864
No 36
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-44 Score=253.26 Aligned_cols=119 Identities=36% Similarity=0.723 Sum_probs=114.2
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceE-eCCCceeccccc--ccCCCcCCHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNI-NSNGSICLDILK--EQWSPALTISK 77 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv-~~~G~icl~~l~--~~W~p~~~i~~ 77 (124)
|.++|+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++||||| +.+|.||+++|. ++|+|+++|++
T Consensus 47 p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~ 126 (169)
T 1yrv_A 47 PVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSS 126 (169)
T ss_dssp ECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHH
T ss_pred EcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeEeehhhcCCcCCCCcCCHHH
Confidence 457899999999999999999999999999999999999999999999999999 689999999998 89999999999
Q ss_pred HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q 040496 78 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120 (124)
Q Consensus 78 il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k 120 (124)
||.+|+++|.+|++++|+|.+|+++|++|+++|.++ |+++++
T Consensus 127 vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 127 ILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp HHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 999999999999999999999999999999999999 888864
No 37
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.8e-44 Score=253.19 Aligned_cols=119 Identities=32% Similarity=0.693 Sum_probs=115.9
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.
T Consensus 49 p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~ 127 (180)
T 2nvu_C 49 SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIY 127 (180)
T ss_dssp SSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGTTSCCTTCCHHHHHH
T ss_pred cccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCcEEcccccccCCCCCCHHHHHH
Confidence 4678999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 120 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k 120 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||++++.
T Consensus 128 si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 128 GLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp HHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999874
No 38
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=4.5e-44 Score=251.75 Aligned_cols=114 Identities=39% Similarity=0.938 Sum_probs=84.3
Q ss_pred CCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceeccccc-------------ccCC
Q 040496 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQWS 70 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~-------------~~W~ 70 (124)
+|+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|. ++|+
T Consensus 45 ~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~Ws 124 (172)
T 2awf_A 45 NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWL 124 (172)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCGGGSCC---------CTTSCC
T ss_pred ccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCCCCcEehhhcCCcccccccccccCCCCC
Confidence 699999999999999999999999999999999999999999999999999999999999996 6899
Q ss_pred CcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHH-HHHHHHHHH
Q 040496 71 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKA-KYEATARSW 117 (124)
Q Consensus 71 p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~-~f~~~~~~~ 117 (124)
|+++|++||.+|++||.+|++++|+|.+|+++|++|++ +|+++||+|
T Consensus 125 P~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 125 PIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp TTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999 999999986
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=2.7e-43 Score=275.00 Aligned_cols=124 Identities=81% Similarity=1.419 Sum_probs=121.4
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL 80 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 80 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|++||++||.
T Consensus 27 p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vL~ 106 (399)
T 4ddg_A 27 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLL 106 (399)
T ss_dssp EETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHH
T ss_pred EcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCCeEeCcccccCCCccccHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 81 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 81 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 107 ~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 107 SICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp HHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999974
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=7.4e-43 Score=248.93 Aligned_cols=120 Identities=32% Similarity=0.640 Sum_probs=115.9
Q ss_pred CCCCCcc---eEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHH
Q 040496 1 PVAEDMF---HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISK 77 (124)
Q Consensus 1 P~~~dl~---~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~ 77 (124)
|.++|++ +|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|++
T Consensus 55 p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~ 133 (190)
T 3o2u_A 55 PDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQS 133 (190)
T ss_dssp TTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHH
T ss_pred CCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhccCCCCCCCCHHH
Confidence 5678999 9999997 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHh
Q 040496 78 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 121 (124)
Q Consensus 78 il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 121 (124)
||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|++..
T Consensus 134 vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~ 177 (190)
T 3o2u_A 134 IITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177 (190)
T ss_dssp HHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred HHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999654
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.4e-40 Score=232.96 Aligned_cols=115 Identities=27% Similarity=0.629 Sum_probs=108.1
Q ss_pred CCCCcceEEEEEECCCCCCCC--CCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHH
Q 040496 2 VAEDMFHWQATIMGPPDSPYA--GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVL 79 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpye--gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il 79 (124)
.++|+++|+++|.||++|||+ ||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|++++.++|
T Consensus 45 ~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vl 124 (167)
T 4ds2_A 45 DTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVI 124 (167)
T ss_dssp EESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHH
T ss_pred CCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHH
Confidence 468999999999999999999 999999999999999999999999999999999999999999999999999999975
Q ss_pred H-HHHHhhcC--CCCCCCccHHHHHHHHHCHHHHHHHHHH
Q 040496 80 L-SICSLLTD--PNPDDPLVPEIAHMYKSDKAKYEATARS 116 (124)
Q Consensus 80 ~-~i~~ll~~--p~~~~~~n~~a~~~~~~~~~~f~~~~~~ 116 (124)
. .|++++.. |++++|+|.+|+++|++|+++|+++||.
T Consensus 125 l~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr 164 (167)
T 4ds2_A 125 KLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164 (167)
T ss_dssp HHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence 4 57777774 7999999999999999999999999983
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=247.59 Aligned_cols=122 Identities=35% Similarity=0.657 Sum_probs=115.6
Q ss_pred CCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecc-----cccceEeCCCceeccccc-------ccC
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILK-------EQW 69 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~-------~~W 69 (124)
.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+ +|||||+.+|.||+++|. ++|
T Consensus 105 ~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~W 184 (323)
T 3ceg_A 105 DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKW 184 (323)
T ss_dssp ESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSC
T ss_pred cCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCC
Confidence 46899999999999999999999999999999999999999999998 999999999999999996 689
Q ss_pred CCcC-CHHHHHHHHHHhhc--CCCCCCCccHHH--HHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 70 SPAL-TISKVLLSICSLLT--DPNPDDPLVPEI--AHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 70 ~p~~-~i~~il~~i~~ll~--~p~~~~~~n~~a--~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
+|++ +|.+||.+|++||. +|++++|+|.++ +.++.+|+++|.++||+|+++||+
T Consensus 185 sPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~ 243 (323)
T 3ceg_A 185 NPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAM 243 (323)
T ss_dssp CTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999 89999999999997 667789999986 688999999999999999999997
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=7.6e-39 Score=221.94 Aligned_cols=101 Identities=27% Similarity=0.558 Sum_probs=95.5
Q ss_pred CcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCce---ecccccccCCCcCCHHHHHHH
Q 040496 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI---CLDILKEQWSPALTISKVLLS 81 (124)
Q Consensus 5 dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~i---cl~~l~~~W~p~~~i~~il~~ 81 (124)
|+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+.+|+| |+++|. +|+|+++|++||.+
T Consensus 53 nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~s 131 (156)
T 2q0v_A 53 TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILIS 131 (156)
T ss_dssp TCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHH
T ss_pred cceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCccCCeEehhhccccc-CCCCcCcHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999 889886 59999999999999
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHHC
Q 040496 82 ICSLLTDPNPDDPLVPEIAHMYKSD 106 (124)
Q Consensus 82 i~~ll~~p~~~~~~n~~a~~~~~~~ 106 (124)
|+++|.+|++++++|.+|+.+|++|
T Consensus 132 I~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 132 LRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp HHHHTTSTTTTTCCCCCTTCBC---
T ss_pred HHHHHhCCCCCCcCChHHHHHhhhC
Confidence 9999999999999999999998775
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-37 Score=206.70 Aligned_cols=92 Identities=37% Similarity=0.695 Sum_probs=84.5
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEeccc-ccceEeCCCceecccccccCCCcCCHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVL 79 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~G~icl~~l~~~W~p~~~i~~il 79 (124)
|.++|+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++ |||||+.+|+||+++|.++|+|+++|++||
T Consensus 30 ~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~iCl~iL~~~W~P~~~i~~vl 109 (125)
T 2fo3_A 30 VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLV 109 (125)
T ss_dssp ECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBBCCGGGTTTCCTTCCHHHHH
T ss_pred eCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCCCEEEchhcCCCCCCCCcHHHHH
Confidence 3568999999999999999999999999999999999999999999996 999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCC
Q 040496 80 LSICSLLTDPNPD 92 (124)
Q Consensus 80 ~~i~~ll~~p~~~ 92 (124)
.+|+++|.+|+..
T Consensus 110 ~si~~ll~~p~~~ 122 (125)
T 2fo3_A 110 LSIISMLSSAKEK 122 (125)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHhCcccc
Confidence 9999999998765
No 45
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=6.6e-37 Score=212.87 Aligned_cols=95 Identities=31% Similarity=0.566 Sum_probs=91.9
Q ss_pred cceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEe-CCCceeccccc--ccCCCcCCHHHHHHHH
Q 040496 6 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILK--EQWSPALTISKVLLSI 82 (124)
Q Consensus 6 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~-~~G~icl~~l~--~~W~p~~~i~~il~~i 82 (124)
+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+ .+|+||+++|. ++|+|+++|++||.+|
T Consensus 58 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI 137 (160)
T 2a4d_A 58 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQEL 137 (160)
T ss_dssp CCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHH
T ss_pred ceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 69999999997 8999999999999999
Q ss_pred HHhhc-CCCCCCCccHHHH
Q 040496 83 CSLLT-DPNPDDPLVPEIA 100 (124)
Q Consensus 83 ~~ll~-~p~~~~~~n~~a~ 100 (124)
+++|. +|++++|+|.||+
T Consensus 138 ~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 138 RRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp HHHHTSTTTTTCCCCCTTC
T ss_pred HHHHccCCCCCCCCChhhc
Confidence 99995 6999999999886
No 46
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.8e-36 Score=205.78 Aligned_cols=91 Identities=36% Similarity=0.698 Sum_probs=87.3
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEeccc-ccceEeCCCceecccccccCCCcCCHHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVL 79 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~G~icl~~l~~~W~p~~~i~~il 79 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++ |||||+.+|.||+++|.++|+|+++|.+||
T Consensus 44 ~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL 123 (136)
T 2h2y_A 44 VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLI 123 (136)
T ss_dssp ECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCTTCCBCCGGGTTTCCTTCCHHHHH
T ss_pred eccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCCCCEEECccccCCCCCCCcHHHHH
Confidence 3568999999999999999999999999999999999999999999996 999999999999999999999999999999
Q ss_pred HHHHHhhcCCCC
Q 040496 80 LSICSLLTDPNP 91 (124)
Q Consensus 80 ~~i~~ll~~p~~ 91 (124)
.+|++||.+|+.
T Consensus 124 ~si~sll~~p~~ 135 (136)
T 2h2y_A 124 LSIISMLSSAKE 135 (136)
T ss_dssp HHHHHHHSSSCC
T ss_pred HHHHHHHhCcCc
Confidence 999999999863
No 47
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=8.5e-38 Score=212.83 Aligned_cols=98 Identities=30% Similarity=0.631 Sum_probs=93.1
Q ss_pred CcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCC-Cce--ecccccccCCCcCCHHHHHHH
Q 040496 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSI--CLDILKEQWSPALTISKVLLS 81 (124)
Q Consensus 5 dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~-G~i--cl~~l~~~W~p~~~i~~il~~ 81 (124)
|+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+.+ |.| |+++|+ +|+|+++|++||.+
T Consensus 38 nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~ 116 (138)
T 1jat_B 38 TMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLD 116 (138)
T ss_dssp TCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHH
T ss_pred cceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999985 999 999885 89999999999999
Q ss_pred HHHhhcCCCCCCCccHHHHHHH
Q 040496 82 ICSLLTDPNPDDPLVPEIAHMY 103 (124)
Q Consensus 82 i~~ll~~p~~~~~~n~~a~~~~ 103 (124)
|+++|.+|++++++|.+|+.+|
T Consensus 117 i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 117 LRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp HHHHHTSHHHHTSCCCCTTCBC
T ss_pred HHHHHcCCCCCCCCCcchhhcC
Confidence 9999999999999999887543
No 48
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.1e-36 Score=202.57 Aligned_cols=87 Identities=41% Similarity=0.839 Sum_probs=84.3
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccc--cceEeCCCceecccccccCCCcCCHHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKV 78 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~--Hpnv~~~G~icl~~l~~~W~p~~~i~~i 78 (124)
|.++|+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++| ||||+.+|+||+++|.++|+|+++|++|
T Consensus 48 ~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~v 127 (136)
T 2a7l_A 48 SVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSV 127 (136)
T ss_dssp CCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHH
T ss_pred eCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHH
Confidence 45789999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 040496 79 LLSICSLLT 87 (124)
Q Consensus 79 l~~i~~ll~ 87 (124)
|.+|++||.
T Consensus 128 L~sI~slL~ 136 (136)
T 2a7l_A 128 CLSIISMLS 136 (136)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999999984
No 49
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=213.02 Aligned_cols=96 Identities=30% Similarity=0.561 Sum_probs=92.2
Q ss_pred CcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEe-CCCceeccccc--ccCCCcCCHHHHHHH
Q 040496 5 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILK--EQWSPALTISKVLLS 81 (124)
Q Consensus 5 dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~-~~G~icl~~l~--~~W~p~~~i~~il~~ 81 (124)
|+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+ .+|.||+++|. ++|+|+++|++||.+
T Consensus 67 nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~s 146 (170)
T 2hlw_A 67 TLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQE 146 (170)
T ss_dssp SCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHH
T ss_pred cceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHH
Confidence 399999999999999999999999999999999999999999999999999 79999999997 899999999999999
Q ss_pred HHHhhc-CCCCCCCccHHHH
Q 040496 82 ICSLLT-DPNPDDPLVPEIA 100 (124)
Q Consensus 82 i~~ll~-~p~~~~~~n~~a~ 100 (124)
|+++|. .|+.++|+|.||+
T Consensus 147 I~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 147 LRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp HHHHHHSTTTSSSCCCSSCC
T ss_pred HHHHHccCCCCCCCCCcccc
Confidence 999997 5999999999876
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-34 Score=203.27 Aligned_cols=113 Identities=24% Similarity=0.601 Sum_probs=90.4
Q ss_pred CCCCCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccc---cccCCCcCCHHH
Q 040496 1 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISK 77 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l---~~~W~p~~~i~~ 77 (124)
|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ ||+|+.+|.||+++| .++|+|+++|.+
T Consensus 38 p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~ 115 (187)
T 2f4w_A 38 PLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVST 115 (187)
T ss_dssp EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCTTSCBC----------CCTTCCHHH
T ss_pred EcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--CceeccCCeEeeeccccCccCCCCcCcHHH
Confidence 456899999999999999999999999999999999999999999999 999999999999999 689999999999
Q ss_pred HHHHHHHhhcCCCCCCC---ccHHHHHHHHHCHHHHHHHHH
Q 040496 78 VLLSICSLLTDPNPDDP---LVPEIAHMYKSDKAKYEATAR 115 (124)
Q Consensus 78 il~~i~~ll~~p~~~~~---~n~~a~~~~~~~~~~f~~~~~ 115 (124)
||.+|+++|.+|+++.. ......+.+..+...|+.+.+
T Consensus 116 vL~si~sll~~p~p~~g~~~~~~~~r~~~a~~s~~~~~~~~ 156 (187)
T 2f4w_A 116 ILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDK 156 (187)
T ss_dssp HHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHHHhhcCc
Confidence 99999999999988744 233444555555544444333
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=9.6e-36 Score=211.55 Aligned_cols=114 Identities=22% Similarity=0.532 Sum_probs=101.8
Q ss_pred CCCCCcceEEEEEECC-CCCCCCC-----------CEEEEEEeCCCCCCCCCCeeEEecccccc-eEeCCCceeccccc-
Q 040496 1 PVAEDMFHWQATIMGP-PDSPYAG-----------GVFLVTIHFPPDYPFKPPKVAFRTKVFHP-NINSNGSICLDILK- 66 (124)
Q Consensus 1 P~~~dl~~w~~~i~Gp-~~tpyeg-----------g~f~~~i~fp~~yP~~pP~v~f~t~i~Hp-nv~~~G~icl~~l~- 66 (124)
|.++|+++|+++|.|| ++|||+| |+|+++|.||++||++||+|+|.|++||| ||+.+|.||+++|.
T Consensus 54 p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~ 133 (186)
T 1zuo_A 54 LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTK 133 (186)
T ss_dssp EETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGST
T ss_pred EcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCC
Confidence 3568999999999997 9999998 89999999999999999999999999999 69999999999996
Q ss_pred ccCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 67 EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 67 ~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
++|+|+++|++||.+|+++|.+|+... .+.+++++|.+++++++.+.+
T Consensus 134 ~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~~~~~~ 181 (186)
T 1zuo_A 134 QGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQSYNSI 181 (186)
T ss_dssp TTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHHHHHHH
Confidence 789999999999999999999986542 344567788888888877764
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.90 E-value=1.5e-25 Score=154.94 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=73.2
Q ss_pred CCCCcceEEEEEECCCCCCCCCC----------EEEEEEeCCCCCCCCCCeeEEecc-cccceEeCCCceecccc-cc--
Q 040496 2 VAEDMFHWQATIMGPPDSPYAGG----------VFLVTIHFPPDYPFKPPKVAFRTK-VFHPNINSNGSICLDIL-KE-- 67 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~tpyegg----------~f~~~i~fp~~yP~~pP~v~f~t~-i~Hpnv~~~G~icl~~l-~~-- 67 (124)
..+|++.|.+.+.||.||+|+|| .|.+++.||++||.+||+|+|.+. ++||||+.+|+|||+++ +.
T Consensus 51 ~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~kp~W 130 (172)
T 2z6o_A 51 NKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLW 130 (172)
T ss_dssp HHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTHHHHH
T ss_pred CccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCCCCcEechhhccccc
Confidence 35789999999999999999999 999999999999999999999998 99999999999999999 43
Q ss_pred -cCCCcCCHHHHHH
Q 040496 68 -QWSPALTISKVLL 80 (124)
Q Consensus 68 -~W~p~~~i~~il~ 80 (124)
.|+|+++|.++|.
T Consensus 131 s~~~P~~~IahiL~ 144 (172)
T 2z6o_A 131 ARNVPKFGLAHLMA 144 (172)
T ss_dssp HHHTTSCCHHHHHH
T ss_pred cccCCccCHHHHHh
Confidence 5669999999984
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.82 E-value=2e-20 Score=129.79 Aligned_cols=89 Identities=30% Similarity=0.525 Sum_probs=77.0
Q ss_pred CCcceEEEEEECCCCCCCCCCE---EEEEEeCCCCCCCCCCeeEEecc----------cc-cceEeCCCceecccccccC
Q 040496 4 EDMFHWQATIMGPPDSPYAGGV---FLVTIHFPPDYPFKPPKVAFRTK----------VF-HPNINSNGSICLDILKEQW 69 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpyegg~---f~~~i~fp~~yP~~pP~v~f~t~----------i~-Hpnv~~~G~icl~~l~~~W 69 (124)
|...++-..+.|.-.++|+|+. |.+.|.||++||++||.|.|.++ ++ |||||.+|+||+++| ++|
T Consensus 58 dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL-~~W 136 (162)
T 3r3q_A 58 DGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAW 136 (162)
T ss_dssp TSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGG-GSC
T ss_pred CCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCccc-ccC
Confidence 4455566666666668999999 88999999999999999988651 77 999999999999999 579
Q ss_pred CC-cCCHHHHHHHHHHhhcCCCCCC
Q 040496 70 SP-ALTISKVLLSICSLLTDPNPDD 93 (124)
Q Consensus 70 ~p-~~~i~~il~~i~~ll~~p~~~~ 93 (124)
++ +.++.++|.+|+++|.+|+++.
T Consensus 137 ~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 137 DPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp CGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred CCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 99 6799999999999999999874
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.66 E-value=1.6e-17 Score=112.69 Aligned_cols=63 Identities=24% Similarity=0.495 Sum_probs=58.4
Q ss_pred ceEEEEEECCCCCCCCCC----------EEEEEEeCCCCCCCCCCeeEEecc-cccceEeCCCceecccccccCCCc
Q 040496 7 FHWQATIMGPPDSPYAGG----------VFLVTIHFPPDYPFKPPKVAFRTK-VFHPNINSNGSICLDILKEQWSPA 72 (124)
Q Consensus 7 ~~w~~~i~Gp~~tpyegg----------~f~~~i~fp~~yP~~pP~v~f~t~-i~Hpnv~~~G~icl~~l~~~W~p~ 72 (124)
..|...+.|+.||+|+|+ .|.++++||.+||.+||+|+|.+. .+||+++.+|+|||+++ |+|.
T Consensus 58 ~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~GkICLdIh---wkPl 131 (168)
T 3kpa_A 58 SHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTH---FFPL 131 (168)
T ss_dssp CCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTTEECCCTT---HHHH
T ss_pred CCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCCcEEeccc---cchh
Confidence 469999999999999999 999999999999999999999995 89999999999999986 6554
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.63 E-value=4.7e-16 Score=106.11 Aligned_cols=80 Identities=21% Similarity=0.517 Sum_probs=71.1
Q ss_pred CCCcceEEEEEECCCCCCCCCCEEE--EEEeCCCCCCCCCCeeEEecc------cccceEeCCCceecccccccCCC-cC
Q 040496 3 AEDMFHWQATIMGPPDSPYAGGVFL--VTIHFPPDYPFKPPKVAFRTK------VFHPNINSNGSICLDILKEQWSP-AL 73 (124)
Q Consensus 3 ~~dl~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~yP~~pP~v~f~t~------i~Hpnv~~~G~icl~~l~~~W~p-~~ 73 (124)
..+++.|.++|. .+|+|+.|. +.|.||++||++||.| |.++ ..|+|||.+|+||++.|. +|++ ..
T Consensus 50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~-~W~~~~s 123 (146)
T 3obq_A 50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH-EWKHPQS 123 (146)
T ss_dssp TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH-TCCTTTC
T ss_pred hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc-ccCCCCC
Confidence 467899999998 579999998 5999999999999999 6665 589999999999999995 4998 78
Q ss_pred CHHHHHHHHHHhhcC
Q 040496 74 TISKVLLSICSLLTD 88 (124)
Q Consensus 74 ~i~~il~~i~~ll~~ 88 (124)
++.++|..|++.|.+
T Consensus 124 nL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 124 DLLGLIQVMIVVFGD 138 (146)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999975
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.21 E-value=0.037 Score=35.74 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.5
Q ss_pred CCEEEEEEeCCCCCCCCCCeeEEec
Q 040496 23 GGVFLVTIHFPPDYPFKPPKVAFRT 47 (124)
Q Consensus 23 gg~f~~~i~fp~~yP~~pP~v~f~t 47 (124)
.-.+.+.+.+|++||.+||.|...+
T Consensus 54 ~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 54 TVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred ceeEEEEEEeCCCCCCCCceEEEEc
Confidence 3478899999999999999998654
No 57
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=95.00 E-value=0.11 Score=34.93 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=21.3
Q ss_pred EEEEEEeCCCCCCCCCCeeEEecc
Q 040496 25 VFLVTIHFPPDYPFKPPKVAFRTK 48 (124)
Q Consensus 25 ~f~~~i~fp~~yP~~pP~v~f~t~ 48 (124)
.+.+.|.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999986653
No 58
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.23 E-value=0.28 Score=31.55 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=27.0
Q ss_pred ceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEe
Q 040496 7 FHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFR 46 (124)
Q Consensus 7 ~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~ 46 (124)
..+.+.|.. .+..=..-.+.+.+.+|.+||..+|.|...
T Consensus 40 ~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 40 TVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp EEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred CeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 466666753 221111247899999999999999998755
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.2 Score=32.65 Aligned_cols=42 Identities=14% Similarity=0.385 Sum_probs=29.2
Q ss_pred cceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecc
Q 040496 6 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK 48 (124)
Q Consensus 6 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~ 48 (124)
...+.+.|....+ .-..-.+.+.+.+|++||..+|.|.+.+.
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 3556677763222 11234788999999999999999987653
No 60
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=93.62 E-value=0.22 Score=31.94 Aligned_cols=25 Identities=24% Similarity=0.700 Sum_probs=21.8
Q ss_pred CEEEEEEeCCCCCCCCCCeeEEecc
Q 040496 24 GVFLVTIHFPPDYPFKPPKVAFRTK 48 (124)
Q Consensus 24 g~f~~~i~fp~~yP~~pP~v~f~t~ 48 (124)
-.+.+.+.+|++||..+|.|...+.
T Consensus 59 ~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 59 VCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred eeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 4788999999999999999987763
No 61
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=92.43 E-value=0.092 Score=34.20 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=20.9
Q ss_pred CEEEEEEeCCCCCCCCCCeeEEec
Q 040496 24 GVFLVTIHFPPDYPFKPPKVAFRT 47 (124)
Q Consensus 24 g~f~~~i~fp~~yP~~pP~v~f~t 47 (124)
-.+.+.+.||++||..+|.|....
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEec
Confidence 468999999999999999998743
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.37 E-value=0.36 Score=32.08 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCCCCCCCeeEEecc
Q 040496 25 VFLVTIHFPPDYPFKPPKVAFRTK 48 (124)
Q Consensus 25 ~f~~~i~fp~~yP~~pP~v~f~t~ 48 (124)
.+.+.+.+|.+||..||.|.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 688999999999999999987654
No 63
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=91.87 E-value=0.63 Score=32.40 Aligned_cols=66 Identities=15% Similarity=0.306 Sum_probs=48.7
Q ss_pred CCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCceecccccccCCCcCCHHHHHHHHH
Q 040496 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSIC 83 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~~i~ 83 (124)
+++....+.+..- .|....++|.++.+||.++|.+...-|. |. .-.|++..++.+++.+.+
T Consensus 23 ~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------------~~~w~~~ssL~~v~~qF~ 83 (186)
T 3zqs_A 23 TCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF------------CASWTPQSSLISIYSQFL 83 (186)
T ss_dssp TTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC------------CCCCCTTCCHHHHHHHHH
T ss_pred CCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------------ccccCCCccHHHHHHHHH
Confidence 4566666677632 4678889999999999999987655443 21 147999999999988888
Q ss_pred HhhcC
Q 040496 84 SLLTD 88 (124)
Q Consensus 84 ~ll~~ 88 (124)
..+..
T Consensus 84 ~~Le~ 88 (186)
T 3zqs_A 84 AAIES 88 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77753
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=87.97 E-value=0.097 Score=33.42 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 89 PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 89 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
.....|.+.+++++|+++++.|.+.+|.|+.-+|.
T Consensus 21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~ 55 (108)
T 2cwb_A 21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT 55 (108)
T ss_dssp -----------------------------------
T ss_pred cccCCchhHHHHHHHHhchhccccccccccccCcC
Confidence 34457889999999999999999999999976664
No 65
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=58.27 E-value=6.8 Score=20.80 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=31.7
Q ss_pred HHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 79 LLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 79 l~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
|..|..-+.+|+ ..--+..+...++.|+..-....+.-+.+|++
T Consensus 3 LqqLl~tlksp~-sp~qqqqvl~ILksnPqLMAAfIkQR~~~y~~ 46 (47)
T 1zoq_C 3 LQDLLRTLKSPS-SPQQQQQVLNILKSNPQLMAAFIKQRTAKYVA 46 (47)
T ss_dssp HHHHHHTCCSCC-CHHHHHHHHHHHHTCHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcc
Confidence 444455555555 22256788899999999988888888888876
No 66
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=48.27 E-value=34 Score=18.97 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 040496 78 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 124 (124)
Q Consensus 78 il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 124 (124)
.|..|..-+.+|. ..--+..+.+.++.|+..-....+.-+.+|.++
T Consensus 9 aLqqLl~tlksp~-speqqqqvl~ILksNPqLMAAfIKQR~~~~~~~ 54 (59)
T 1kbh_B 9 ALQDLLRTLKSPS-SPQQQQQVLNILKSNPQLMAAFIKQRTAKYVAN 54 (59)
T ss_dssp HHHHHHHHHHSCT-TTTCSTHHHHHHTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Confidence 3445555555665 333678899999999998888888888888763
No 67
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=45.63 E-value=21 Score=24.97 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=22.6
Q ss_pred CCCCEEEEEEeCCCCCCC-----CCCeeEEec
Q 040496 21 YAGGVFLVTIHFPPDYPF-----KPPKVAFRT 47 (124)
Q Consensus 21 yegg~f~~~i~fp~~yP~-----~pP~v~f~t 47 (124)
-+.|.|.|+-.+|-.||. .||.|.|.-
T Consensus 108 d~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 108 FGTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 357999999999999998 788887753
No 68
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=43.63 E-value=43 Score=22.55 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=28.0
Q ss_pred CCCCcceEEEEEECCCCC-------------CCCCCEEEEEEeCCCCCCCCCCe
Q 040496 2 VAEDMFHWQATIMGPPDS-------------PYAGGVFLVTIHFPPDYPFKPPK 42 (124)
Q Consensus 2 ~~~dl~~w~~~i~Gp~~t-------------pyegg~f~~~i~fp~~yP~~pP~ 42 (124)
..+|+ +|+++..|..++ |-.-|+++|.++-+.=-+.+-|.
T Consensus 34 L~~dl-ewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~IP~ 86 (161)
T 2cu9_A 34 LKSDL-EWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNIDLLPQ 86 (161)
T ss_dssp CSSCE-EEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCCCGGGSSC
T ss_pred CCCCe-EEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCCChhHCCC
Confidence 34454 899999986654 66669999988876555555555
No 69
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=35.93 E-value=47 Score=19.44 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=32.3
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 82 ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 82 i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
|+.|+..-++...+.+++..++.+=.+.|...+-..+.+.|+
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAK 52 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLAR 52 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555446677788999999998888999888888887774
No 70
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=33.61 E-value=1.1e+02 Score=20.75 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCcceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeeEEecccc
Q 040496 4 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF 50 (124)
Q Consensus 4 ~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~ 50 (124)
+.-++|.+.+.|+.+.-...-+=++...+.+.||. |.-.+..+-|
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 46678999999987765555677888999999985 6666655544
No 71
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=30.00 E-value=53 Score=20.75 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=23.1
Q ss_pred EEEEEECCCCCCCCCCEEEEEEeCCC
Q 040496 9 WQATIMGPPDSPYAGGVFLVTIHFPP 34 (124)
Q Consensus 9 w~~~i~Gp~~tpyegg~f~~~i~fp~ 34 (124)
.|+.+.|.+..+=+|..+.+.+.|-+
T Consensus 82 ~HvML~gl~~~l~~G~~v~ltL~Fe~ 107 (120)
T 2k6w_A 82 YHFMLLGLKRPLKAGEEVELDLLFAG 107 (120)
T ss_dssp EEEEEEEESSCBCTTCEEEEEEEETT
T ss_pred eEEEEeCCCCCCCCCCEEEEEEEECC
Confidence 68999999888889999999999864
No 72
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=29.81 E-value=32 Score=24.66 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=22.3
Q ss_pred CCCCEEEEEEeCCCCCC-------CCCCeeEEec
Q 040496 21 YAGGVFLVTIHFPPDYP-------FKPPKVAFRT 47 (124)
Q Consensus 21 yegg~f~~~i~fp~~yP-------~~pP~v~f~t 47 (124)
-+.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 133 D~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~V 166 (241)
T 2bum_B 133 DDNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSL 166 (241)
T ss_dssp CTTSEEEEEEECCCCEEESSSTTEEECSEEEEEE
T ss_pred CCCceEEEEEecCCccccCCCCCCCcCceEEEEE
Confidence 35699999999999998 4788887763
No 73
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=29.20 E-value=38 Score=21.64 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=21.6
Q ss_pred eEeCCCceecccccccCCCcCCHHHHHHHHHHhh
Q 040496 53 NINSNGSICLDILKEQWSPALTISKVLLSICSLL 86 (124)
Q Consensus 53 nv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll 86 (124)
-||++|+|-............+..+++..|+.+|
T Consensus 138 liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll 171 (171)
T 2yzh_A 138 IIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI 171 (171)
T ss_dssp EECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred EEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence 4567888876555434444456778888887764
No 74
>1roc_A Anti-silencing protein 1; beta-sandwich, replication, chaperone; 1.50A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 2ygv_A
Probab=29.08 E-value=95 Score=20.73 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=21.0
Q ss_pred ceEEEEEECCCCC-------------CCCCCEEEEEEeCCC
Q 040496 7 FHWQATIMGPPDS-------------PYAGGVFLVTIHFPP 34 (124)
Q Consensus 7 ~~w~~~i~Gp~~t-------------pyegg~f~~~i~fp~ 34 (124)
.+|+++..|..++ |-.-|+++|.++-+.
T Consensus 39 lewkliYVgSa~s~~~DQ~Ld~v~vGPi~~G~~kFv~~adp 79 (155)
T 1roc_A 39 LEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADP 79 (155)
T ss_dssp EEEEEEECCCTTSSCTTEEEEEEEECSCCSEEEEEEEEECC
T ss_pred cEEEEEEEeCCCcccCceEeeEEEeccccceeEEEEEEcCC
Confidence 7899999886554 556688888887654
No 75
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=28.31 E-value=59 Score=20.60 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=21.4
Q ss_pred eEeCCCceecccccccCCCcCCHHHHHHHHHHh
Q 040496 53 NINSNGSICLDILKEQWSPALTISKVLLSICSL 85 (124)
Q Consensus 53 nv~~~G~icl~~l~~~W~p~~~i~~il~~i~~l 85 (124)
-||++|+|-...+...+....++.+++..|++|
T Consensus 124 lID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 124 VIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp EECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred EECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 467888886554444444445677888777664
No 76
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=27.76 E-value=36 Score=24.34 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.7
Q ss_pred CCCEEEEEEeCCCCCCC-------CCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYPF-------KPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP~-------~pP~v~f~ 46 (124)
+.|.|.|+-.+|--||. .||.|.|.
T Consensus 133 ~~G~y~F~TI~Pg~Yp~p~~~~~~Rp~HIHf~ 164 (238)
T 3t63_M 133 SDGYYSFRTIKPGPAPWRNGPNDWRPAHIYFG 164 (238)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEECCcCccCCCCCCCCcCCeEEEE
Confidence 45999999999999986 78888776
No 77
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=27.64 E-value=19 Score=16.20 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=7.9
Q ss_pred CCCCeeEEecccccc
Q 040496 38 FKPPKVAFRTKVFHP 52 (124)
Q Consensus 38 ~~pP~v~f~t~i~Hp 52 (124)
+.-|.-.|..+.|||
T Consensus 5 mtlpenyfserpyhp 19 (26)
T 2jrw_A 5 MTLPENYFSERPYHP 19 (26)
T ss_dssp CCCSSSSCCSSSCCS
T ss_pred cccchhhcccCCCCC
Confidence 334444555566665
No 78
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=27.35 E-value=36 Score=25.40 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=21.1
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~ 46 (124)
+.|.|.|+-.+|-.|| ..||.|.|.
T Consensus 187 ~~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~ 229 (312)
T 2xsu_A 187 VNGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYF 229 (312)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEE
Confidence 5699999999999998 568888775
No 79
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=27.05 E-value=37 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=21.9
Q ss_pred CCCCEEEEEEeCCCCCC------------------CCCCeeEEe
Q 040496 21 YAGGVFLVTIHFPPDYP------------------FKPPKVAFR 46 (124)
Q Consensus 21 yegg~f~~~i~fp~~yP------------------~~pP~v~f~ 46 (124)
-+.|.|.|+-.+|--|| ..||.|.|.
T Consensus 182 D~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 225 (293)
T 1tmx_A 182 GPDGGYAFWAITPTPYPIPHDGPVGRMLAATGRSPMRASHLHFM 225 (293)
T ss_dssp CTTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCCceEEEEEECCCcccCCCCCchHHHHHhcccCCCCCceEEEE
Confidence 46799999999999998 458888776
No 80
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=26.95 E-value=36 Score=25.33 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.4
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~ 46 (124)
+.|.|.|+-.+|-.|| ..||.|.|.
T Consensus 183 ~~G~y~F~TI~Pg~Y~~p~dGp~g~lL~~~grh~~RpaHIHf~ 225 (311)
T 2azq_A 183 AEGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHVHFF 225 (311)
T ss_dssp TTCEEEEEEECCCCEECCTTSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CCceEEEEEEcCCCcCCCCCCcHHHHHHhhhccCCCCceEEEE
Confidence 5699999999999998 458888875
No 81
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=26.76 E-value=37 Score=25.01 Aligned_cols=25 Identities=28% Similarity=0.680 Sum_probs=21.1
Q ss_pred CCCEEEEEEeCCCCCCC------------------CCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYPF------------------KPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP~------------------~pP~v~f~ 46 (124)
+.|.|.|+-.+|--||. .||.|.|.
T Consensus 180 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 222 (290)
T 3n9t_A 180 NDGCFAIQTTVPVCYPIPTDGPVGEMLDAANRHAWRPAHLHFM 222 (290)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CCceEEEEEeCCCCcCCCCCCcHHHHHHhccCCCCcCceEEEE
Confidence 45999999999999994 58888776
No 82
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=26.50 E-value=44 Score=23.19 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.1
Q ss_pred CEEEEEEeCCCCCCCC-----CCeeEEe
Q 040496 24 GVFLVTIHFPPDYPFK-----PPKVAFR 46 (124)
Q Consensus 24 g~f~~~i~fp~~yP~~-----pP~v~f~ 46 (124)
|.|.|+-.+|--||.. ||.|.|.
T Consensus 102 G~~~F~TI~Pg~Y~~~~g~~rp~HIH~~ 129 (200)
T 3t63_A 102 GEWTLHTVKPGVVNNAAGVPMAPHINIS 129 (200)
T ss_dssp CSEEEEEECCCCEECTTSCEECSCEEEE
T ss_pred CEEEEEEECCcCcCCCCCCccCCEEEEE
Confidence 8999999999999986 7777765
No 83
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=25.59 E-value=41 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.549 Sum_probs=20.6
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~ 46 (124)
+.|.|.|+-..|-.|| ..||.|.|.
T Consensus 153 ~~G~y~F~TI~Pg~Y~~p~dGp~G~ll~~~grh~~RpaHIH~~ 195 (254)
T 2boy_A 153 ENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWI 195 (254)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECCccccCCCCCcHHHHHHhcccccCCCceEEEE
Confidence 4599999999999887 467888776
No 84
>2hue_A Anti-silencing protein 1; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 1wg3_A
Probab=25.13 E-value=1.4e+02 Score=20.29 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=23.7
Q ss_pred ceEEEEEECCCCC-------------CCCCCEEEEEEeCCCCCCCC
Q 040496 7 FHWQATIMGPPDS-------------PYAGGVFLVTIHFPPDYPFK 39 (124)
Q Consensus 7 ~~w~~~i~Gp~~t-------------pyegg~f~~~i~fp~~yP~~ 39 (124)
.+|+++..|..++ |..-|+++|.++-+.=-+.+
T Consensus 44 leWkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~ 89 (175)
T 2hue_A 44 LEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADPPSAEL 89 (175)
T ss_dssp EEEEEEEESCTTCGGGEEEEEEEEECSCCSEEEEEEEEECCCCGGG
T ss_pred cEEEEEEEcCCCCccCCeEeeEEEECCccceeEEEEEEcCCCChhh
Confidence 7899999886654 66779999888875433333
No 85
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=25.03 E-value=60 Score=20.43 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=22.4
Q ss_pred eEeCCCceecccccccCCCcCCHHHHHHHHHHhh
Q 040496 53 NINSNGSICLDILKEQWSPALTISKVLLSICSLL 86 (124)
Q Consensus 53 nv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll 86 (124)
-||++|+|-...........-++.+++..|..++
T Consensus 133 lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 133 VLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp EECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred EEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 3567888876555444444456778888887765
No 86
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=24.73 E-value=65 Score=23.30 Aligned_cols=25 Identities=28% Similarity=0.685 Sum_probs=19.7
Q ss_pred CCCEEEEEEeCCCCC------------------CCCCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDY------------------PFKPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~y------------------P~~pP~v~f~ 46 (124)
+.|.|.|+-.+|.-| |..||.|.|.
T Consensus 150 ~~G~y~F~TI~P~~Ypip~dGp~g~ll~~~gr~~~RpaHIHf~ 192 (260)
T 3th1_A 150 SQGNYRVRTTMPVPYQIPYEGPTGRLLGHLGSHTWRPAHVHFK 192 (260)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCSEECCEEEEE
T ss_pred CCCEEEEEEECCCCCCCCCCCcHHHHHHhcCCCCCCCCeEEEE
Confidence 458999999999666 4567888776
No 87
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=24.54 E-value=43 Score=24.91 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~ 46 (124)
+.|.|.|+-.+|--|| ..||.|.|.
T Consensus 186 ~~G~y~F~TI~Pg~Yp~p~dgp~g~lL~~~grh~~RpaHIHf~ 228 (311)
T 1dmh_A 186 ENGQYRVRTILPAGYGCPPEGPTQQLLNQLGRHGNRPAHIHYF 228 (311)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECSEEEEE
T ss_pred CCceEEEEEEcCCcccCCCCCcHHHHHHhcccCCCCCceEEEE
Confidence 4599999999999997 468888776
No 88
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=24.48 E-value=41 Score=24.65 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=20.4
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeEEe
Q 040496 22 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 46 (124)
Q Consensus 22 egg~f~~~i~fp~~yP------------------~~pP~v~f~ 46 (124)
+.|.|.|+-.+|-.|| ..||.|.|.
T Consensus 182 ~dG~y~F~TI~Pg~Yp~p~dGp~G~lL~~~grh~~RpaHIH~~ 224 (280)
T 3hhy_A 182 EEGRYEITTIQPAPYQIPTDGPTGQFIEAQNGHPWRPAHLHLI 224 (280)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECSCEEEE
T ss_pred CCceEEEEEECCcCcCCCCCCcHHHHHHhcCCCCCCCcEEEEE
Confidence 4599999999998887 467888775
No 89
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=24.16 E-value=82 Score=17.53 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=17.3
Q ss_pred ccHHHHHHHHHCHHHHHHHH
Q 040496 95 LVPEIAHMYKSDKAKYEATA 114 (124)
Q Consensus 95 ~n~~a~~~~~~~~~~f~~~~ 114 (124)
.|++..++..+|.++|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 67889999999999998765
No 90
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=24.04 E-value=86 Score=20.08 Aligned_cols=35 Identities=6% Similarity=0.110 Sum_probs=22.2
Q ss_pred eEeCCCceecccccccCCCcCCHHHHHHHHHHhhc
Q 040496 53 NINSNGSICLDILKEQWSPALTISKVLLSICSLLT 87 (124)
Q Consensus 53 nv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 87 (124)
-||++|+|-.........-.-++.++|..|+.+..
T Consensus 126 lID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 126 IVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp EECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred EECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 46778888654443333333468888888877653
No 91
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form, structural proteomics in europe, spine, structur genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1 PDB: 2jqa_A
Probab=23.96 E-value=69 Score=21.04 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=23.8
Q ss_pred EEEEEECCCCCCCCCCEEEEEEeCCCC
Q 040496 9 WQATIMGPPDSPYAGGVFLVTIHFPPD 35 (124)
Q Consensus 9 w~~~i~Gp~~tpyegg~f~~~i~fp~~ 35 (124)
.|+.++|.+..+=+|..+.+.+.|-+.
T Consensus 107 ~HvML~gL~~~l~~G~~v~lTL~Fe~~ 133 (149)
T 1x9l_A 107 DHVMLMGLKRPLKVGETVNITLKATDG 133 (149)
T ss_dssp SEEEEEEECSCCCTTEEEEEEECBTTT
T ss_pred eEEEEeCCCCCCCCCCEEEEEEEECCC
Confidence 689999999888899999999999654
No 92
>3s7v_A Major capsid protein VP1; jelly-roll, antiparallel beta sandwich, major capsid protein protein; 2.55A {Ki polyomavirus} PDB: 3s7x_A
Probab=23.79 E-value=1.4e+02 Score=21.71 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=28.6
Q ss_pred CCCCCCEEEEEEeCCCCCCCCCCeeEEecccccceEeCCCc--eec
Q 040496 19 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS--ICL 62 (124)
Q Consensus 19 tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~--icl 62 (124)
+-=|+.+|..++.=.. ..||.+.|....--+.+|++|. +|.
T Consensus 197 skNENtRYFG~~tGG~---~TPPVl~ftNt~TTvLLDENGVGpLCk 239 (277)
T 3s7v_A 197 SRNDNCRYFGRVVGGA---ATPPVVSYGNNSTIPLLDENGIGILCL 239 (277)
T ss_dssp TSCCSEEEEEEEECCS---SCCCEEEEESSCCEECCCTTSCCEECT
T ss_pred CcCcCceeeEEecCCC---CCCCeEEecCceeEEEEcCCCcccccc
Confidence 3345666666665443 3579999998888889998754 665
No 93
>2idc_A Anti-silencing protein 1 and histone H3 chimera; IG-like fold, ASF1, chaperone, chromatin, repli chaperone complex; 2.20A {Saccharomyces cerevisiae}
Probab=23.54 E-value=1.3e+02 Score=20.48 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=21.2
Q ss_pred ceEEEEEECCCCC-------------CCCCCEEEEEEeCCC
Q 040496 7 FHWQATIMGPPDS-------------PYAGGVFLVTIHFPP 34 (124)
Q Consensus 7 ~~w~~~i~Gp~~t-------------pyegg~f~~~i~fp~ 34 (124)
.+|+++..|..++ |..-|+++|.+.-+.
T Consensus 40 leWkliYVgSa~s~~~DQ~Ldsv~VGPi~~G~~kFv~~adp 80 (179)
T 2idc_A 40 LEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADP 80 (179)
T ss_dssp EEEEEEECSCTTCGGGCEEEEEEEECSCCSEEEEEEEEECC
T ss_pred cEEEEEEEcCCCcccCCeEeeEEEECCccceeEEEEEEcCC
Confidence 7899999886654 566688888887643
No 94
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=22.31 E-value=81 Score=18.22 Aligned_cols=22 Identities=5% Similarity=0.123 Sum_probs=18.9
Q ss_pred CccHHHHHHHHHCHHHHHHHHH
Q 040496 94 PLVPEIAHMYKSDKAKYEATAR 115 (124)
Q Consensus 94 ~~n~~a~~~~~~~~~~f~~~~~ 115 (124)
..|++.+++..+|.++|.+...
T Consensus 38 ~~NPqL~q~I~~n~e~Fl~ll~ 59 (72)
T 1pve_A 38 RENPQLLQQISQHQEHFIQMLN 59 (72)
T ss_dssp TTCHHHHHHHHTTHHHHHHHHH
T ss_pred hHCHHHHHHHHHCHHHHHHHHc
Confidence 3688999999999999998763
No 95
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=21.73 E-value=75 Score=22.18 Aligned_cols=47 Identities=2% Similarity=-0.127 Sum_probs=25.6
Q ss_pred eEeCCCceecccccccCCCcCCHHHHHHHHHHhhcCCCCCCCccHHH
Q 040496 53 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 99 (124)
Q Consensus 53 nv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a 99 (124)
-||++|.|-...+.......-++.++|..|+.+....-..++--.+|
T Consensus 142 vID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~~~~~~~~~~~ 188 (224)
T 3keb_A 142 LADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQQAMAAEREAAEA 188 (224)
T ss_dssp EECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHHHHC----------
T ss_pred EEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhhhcccccChhhhhh
Confidence 45678888765554444444568899999888876544333333333
No 96
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=21.70 E-value=1.2e+02 Score=17.24 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=25.0
Q ss_pred CCccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 93 DPLVPEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 93 ~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
+.++.+++..+.++-+...+.+-+.+.|++
T Consensus 22 ~~lsddaa~~LA~dvEyr~~eI~qeA~kfm 51 (70)
T 1taf_B 22 GSLSDDAAKELAEDVSIKLKRIVQDAAKFM 51 (70)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999988887777777776
No 97
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=21.21 E-value=1.1e+02 Score=24.54 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.2
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 97 PEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 97 ~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
.|+..+..+|++.|.++|++...++.
T Consensus 278 ee~~~l~~~dp~~~~~~~~~Sm~rhv 303 (552)
T 2fkn_A 278 DEADRLRQDTPELYVRLAKQSMKKHV 303 (552)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 57888889999999999999887653
No 98
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=21.06 E-value=1.1e+02 Score=24.51 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 97 PEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 97 ~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
.|+..+..+|++.|.++|++...++.
T Consensus 277 ee~~~l~~~dp~~~~~~~~~Sm~rhv 302 (551)
T 1x87_A 277 DEAAELRARDPKQYIARAKQSIAAHV 302 (551)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 57888889999999999999887653
No 99
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=20.70 E-value=1.1e+02 Score=24.47 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=22.2
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 040496 97 PEIAHMYKSDKAKYEATARSWTQKYA 122 (124)
Q Consensus 97 ~~a~~~~~~~~~~f~~~~~~~~~k~a 122 (124)
.|+..+..+|++.|.++|++...++.
T Consensus 282 ee~~~l~~~dp~~~~~~~~~Sm~rhv 307 (557)
T 1uwk_A 282 EQYRDRAQTEPAAVVKAAKQSMAVHV 307 (557)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 57888889999999999999887653
No 100
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=20.29 E-value=1e+02 Score=17.34 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=21.3
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 040496 96 VPEIAHMYKSDKAKYEATARSWTQKYAM 123 (124)
Q Consensus 96 n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 123 (124)
..||...+++=+--...+||.-+.+||.
T Consensus 7 t~EAe~~LkkIP~FVR~kvrr~tE~~Ar 34 (63)
T 2kru_A 7 TAEAEKMLGKVPFFVRKKVRKNTDNYAR 34 (63)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3567777777776677888888888884
Done!