Query 040497
Match_columns 295
No_of_seqs 176 out of 357
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 4.1E-61 8.8E-66 413.5 19.8 150 111-283 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.6 1.8E-08 3.9E-13 69.5 2.5 45 19-63 1-45 (47)
3 smart00256 FBOX A Receptor for 98.3 8.5E-07 1.8E-11 58.3 3.6 40 22-61 1-40 (41)
4 PF00646 F-box: F-box domain; 98.2 2.3E-07 5E-12 63.7 0.3 44 19-62 3-46 (48)
5 PF06881 Elongin_A: RNA polyme 94.2 0.033 7.2E-07 45.2 2.5 71 18-92 3-73 (109)
6 KOG2997 F-box protein FBX9 [Ge 88.0 0.19 4.2E-06 48.4 0.7 79 19-99 107-194 (366)
7 KOG3926 F-box proteins [Amino 87.5 0.36 7.8E-06 45.7 2.1 78 15-92 198-278 (332)
8 PLN03215 ascorbic acid mannose 80.6 1.5 3.3E-05 43.2 3.2 39 18-56 3-42 (373)
9 KOG0274 Cdc4 and related F-box 80.5 0.95 2.1E-05 46.6 1.9 52 16-67 105-156 (537)
10 KOG4408 Putative Mg2+ and Co2+ 78.8 0.53 1.2E-05 45.7 -0.5 52 16-67 5-56 (386)
11 KOG2120 SCF ubiquitin ligase, 65.7 8.6 0.00019 37.5 4.2 47 16-62 95-141 (419)
12 PF13013 F-box-like_2: F-box-l 56.9 9.9 0.00022 31.2 2.6 46 15-63 18-63 (109)
13 KOG4114 Cytochrome c oxidase a 49.9 9.2 0.0002 29.0 1.2 33 16-52 35-69 (73)
14 KOG3233 RNA polymerase III, su 38.1 6.6 0.00014 37.3 -1.4 43 108-158 137-183 (297)
15 KOG0281 Beta-TrCP (transducin 24.8 47 0.001 33.0 1.9 43 19-61 75-121 (499)
16 PF02018 CBM_4_9: Carbohydrate 24.8 3.3E+02 0.0071 21.0 10.1 65 166-262 60-125 (131)
17 KOG1496 Malate dehydrogenase [ 22.9 55 0.0012 31.1 1.9 48 231-281 251-305 (332)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=4.1e-61 Score=413.46 Aligned_cols=150 Identities=36% Similarity=0.730 Sum_probs=138.1
Q ss_pred CceEEEEeeccceeecCCCCCCeeeecCCcccccceeEEeEeeEEEEeeEEeecC--CCCcEEEEEEEEecccccccCce
Q 040497 111 GRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPL--PADVYTVSFRLHLGRFAKRLGRR 188 (295)
Q Consensus 111 GkkCymLSAR~L~ItWgdd~~YW~Wi~~peSRF~EVAeL~~VcWLEI~Gki~t~l--p~t~Y~ay~v~kl~~~~~~~g~~ 188 (295)
|+||||||||+|+|||||||+||+|+++|+|||.|||||++||||||+|+|++++ |+|+|+||||||+
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl---------- 70 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKL---------- 70 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEe----------
Confidence 8999999999999999999999999999999999999999999999999999985 9999999999999
Q ss_pred eecccccccCCCCCeEEEEeecCCce--eeeEEecccCccccCCCccccCceEEEEeeeEEecCCCCCeEEEEEEEEeeC
Q 040497 189 VCNFEHTHGWDIKPVRLELSTSDGQQ--ASSECYLDKMEQDDANGYHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDC 266 (295)
Q Consensus 189 ~~~~~~~~Gwd~~Pv~~~l~~~~g~~--~~~~~~l~~~~~~~~~~~~~rdgW~EielGeF~~~~~~~~~eV~fsl~E~~~ 266 (295)
++++|||+..||++++++++++. ..+.+++. .+++|||||||+|||+|+++ ++++|+|+|+|+++
T Consensus 71 ---~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~---------~~r~dgW~Eie~GeF~~~~~-~~~ev~f~~~E~~~ 137 (154)
T PF14299_consen 71 ---KDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLP---------KERGDGWMEIELGEFFNEGG-DDGEVEFSMYEVDS 137 (154)
T ss_pred ---cCCCCCCCcCCEEEEEEeCCCccccceeeEEcC---------CCCCCCEEEEEcceEEecCC-CCcEEEEEEEEecC
Confidence 68899999999999999998875 33344443 35679999999999999965 78999999999999
Q ss_pred CCccccEEEEEEEEEec
Q 040497 267 THSKGGLCVDSVFIIPS 283 (295)
Q Consensus 267 ~~wK~GLiV~GIeIRPk 283 (295)
++||+||||+|||||||
T Consensus 138 ~~wK~GLiv~GieIRPK 154 (154)
T PF14299_consen 138 GHWKGGLIVEGIEIRPK 154 (154)
T ss_pred CcccCeEEEEEEEEecC
Confidence 99999999999999998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.63 E-value=1.8e-08 Score=69.49 Aligned_cols=45 Identities=24% Similarity=0.592 Sum_probs=40.2
Q ss_pred CCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCC
Q 040497 19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKL 63 (295)
Q Consensus 19 ~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~fl 63 (295)
+.+||+|.+..|+++++|.|.+++++||+.|+.++.++.+|.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 478999999999999999999999999999999999999998753
No 3
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=8.5e-07 Score=58.28 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=38.6
Q ss_pred chhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhcc
Q 040497 22 IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWEN 61 (295)
Q Consensus 22 LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~ 61 (295)
||++++..|+++++|.|.+++++||+.||.+.+.+.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.25 E-value=2.3e-07 Score=63.69 Aligned_cols=44 Identities=23% Similarity=0.604 Sum_probs=38.6
Q ss_pred CCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccC
Q 040497 19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENK 62 (295)
Q Consensus 19 ~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~f 62 (295)
+.+||++++.+|++++++.|+++++.||+.|+.+.+++..|.++
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56899999999999999999999999999999999999999764
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=94.25 E-value=0.033 Score=45.16 Aligned_cols=71 Identities=14% Similarity=0.297 Sum_probs=57.0
Q ss_pred CCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCCchhhhcCCCCccCCCccHHHHHHHhc
Q 040497 18 GLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLS 92 (295)
Q Consensus 18 ~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~skKely~~Lc 92 (295)
.++++|...|.-||...+|....++-.-|+.+ +-++|.+|.+|+=.||+.-..... ....-+-+++|.++.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~--~~~~~~Wr~~Y~~~~ 73 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK--PKEPESWRELYEKLK 73 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc--ccccchHHHHHHHHH
Confidence 47889999999999999999999999999866 567999999999999975222211 112357899999976
No 6
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=87.99 E-value=0.19 Score=48.45 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=56.7
Q ss_pred CCCchhHHHHHHHhcCC-----hHHHHHHhhhhHHhhcccCchhhhccCCCCCchhhhcCCCCc---cCCCccHHHHHHH
Q 040497 19 LGDIPESCVACVFMYLT-----PPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPE---RYLNLSKKEIFAL 90 (295)
Q Consensus 19 ~~~LPe~cia~ils~ts-----P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~---~~~~~skKely~~ 90 (295)
|..||++.+-.|+...= -++-.++|+|++.|+-+|..|.+|..++-.-|..-+-.+.+. +.-..|-+++|+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~ 186 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE 186 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence 57899999988886654 499999999999999999999999998876664322222110 1123467777765
Q ss_pred hcCC-CccCC
Q 040497 91 LSRP-VPFDD 99 (295)
Q Consensus 91 Lc~p-~lld~ 99 (295)
+| |.+|+
T Consensus 187 --RpRvrFdG 194 (366)
T KOG2997|consen 187 --RPRVRFDG 194 (366)
T ss_pred --Ccceeecc
Confidence 55 56654
No 7
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=87.46 E-value=0.36 Score=45.71 Aligned_cols=78 Identities=15% Similarity=0.315 Sum_probs=56.5
Q ss_pred CCCCCCCchhHHHHHHHhcCC-hHHHHHHhhhhHHhhcccCchhhhccCCCCCch--hhhcCCCCccCCCccHHHHHHHh
Q 040497 15 MGPGLGDIPESCVACVFMYLT-PPEICNLARLNRAFRGAASSDSVWENKLPSNYQ--DLLDLMPPERYLNLSKKEIFALL 91 (295)
Q Consensus 15 ~~~~~~~LPe~cia~ils~ts-P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~--~i~~~~~~~~~~~~skKely~~L 91 (295)
.+..|.|||++|+..||-+++ -+|.--+|.|-+++....+.+-+|.+.+-=.|. +|-..+.-..-....-|++|+.|
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L 277 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQL 277 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHH
Confidence 578899999999999999865 899999999999999999999999987653331 23222210000112357888887
Q ss_pred c
Q 040497 92 S 92 (295)
Q Consensus 92 c 92 (295)
-
T Consensus 278 ~ 278 (332)
T KOG3926|consen 278 R 278 (332)
T ss_pred H
Confidence 4
No 8
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=80.59 E-value=1.5 Score=43.21 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=35.2
Q ss_pred CCCCchhHHHHHHHhcC-ChHHHHHHhhhhHHhhcccCch
Q 040497 18 GLGDIPESCVACVFMYL-TPPEICNLARLNRAFRGAASSD 56 (295)
Q Consensus 18 ~~~~LPe~cia~ils~t-sP~d~cr~a~vs~~fr~aa~sD 56 (295)
.-.+||++.+..|..++ +..|.-|+++|+++.|+|+...
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 34689999999999998 7899999999999999998863
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.49 E-value=0.95 Score=46.63 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=46.4
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCCc
Q 040497 16 GPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNY 67 (295)
Q Consensus 16 ~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~ 67 (295)
...+..||-+-.-.|+++++|++.+.+++||+.|+.-++.|.+|.+.+.+..
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~ 156 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELI 156 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhc
Confidence 4457789999999999999999999999999999999999999997766543
No 10
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=78.80 E-value=0.53 Score=45.73 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=47.4
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCCc
Q 040497 16 GPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNY 67 (295)
Q Consensus 16 ~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~ 67 (295)
..+++.||.+-+..+++|+.++++.+.|+||+.+...+.-+..|+++.-.++
T Consensus 5 ~~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 5 PLGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred ccchhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 4568899999999999999999999999999999999999999999985544
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=65.70 E-value=8.6 Score=37.55 Aligned_cols=47 Identities=21% Similarity=0.463 Sum_probs=43.8
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccC
Q 040497 16 GPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENK 62 (295)
Q Consensus 16 ~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~f 62 (295)
+..++.||++.+-.|+|.+--.|.-++|.|++.|...|.....|...
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 55589999999999999999999999999999999999999999754
No 12
>PF13013 F-box-like_2: F-box-like domain
Probab=56.89 E-value=9.9 Score=31.15 Aligned_cols=46 Identities=30% Similarity=0.473 Sum_probs=39.0
Q ss_pred CCCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCC
Q 040497 15 MGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKL 63 (295)
Q Consensus 15 ~~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~fl 63 (295)
....+.|||++.+..|+.+-.+.+...+....+++|.+. +..|. +|
T Consensus 18 ~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r--~~~~~-~L 63 (109)
T PF13013_consen 18 QSLTLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWR--DHIWY-LL 63 (109)
T ss_pred cccchhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH--HHHHH-Hh
Confidence 345689999999999999999999999999999999874 44665 44
No 13
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=49.88 E-value=9.2 Score=28.99 Aligned_cols=33 Identities=36% Similarity=0.851 Sum_probs=22.3
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHhhhh--HHhhcc
Q 040497 16 GPGLGDIPESCVACVFMYLTPPEICNLARLN--RAFRGA 52 (295)
Q Consensus 16 ~~~~~~LPe~cia~ils~tsP~d~cr~a~vs--~~fr~a 52 (295)
..++.+|||+|++.+=.|+. |.=+.|- +.||.+
T Consensus 35 n~~~~~vPeeC~al~~af~d----CKRslvDmrkRfrgr 69 (73)
T KOG4114|consen 35 NPELKDVPEECIALMKAFLD----CKRSLVDMRKRFRGR 69 (73)
T ss_pred CCccccCcHHHHHHHHHHHH----HHHHHHHHHHHHccc
Confidence 34567899999999998875 4444443 335544
No 14
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=38.13 E-value=6.6 Score=37.32 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=30.3
Q ss_pred ecCCceEEEEee--ccceeecCCCCCCeeeecCC--cccccceeEEeEeeEEEEe
Q 040497 108 RVTGRVCLSIST--KAMAITGIEDRRYWNWIPTE--ESRFHVVAYLQQIWWFEVD 158 (295)
Q Consensus 108 k~sGkkCymLSA--R~L~ItWgdd~~YW~Wi~~p--eSRF~EVAeL~~VcWLEI~ 158 (295)
+.+++|||||.. -+.+||.|- |.+.. |+-|.|+ |+++||.=+.
T Consensus 137 ~n~~~KvYmLy~leP~~elTGG~------WytDqdlDvEfIe~--L~~~c~~fl~ 183 (297)
T KOG3233|consen 137 KNSRKKVYMLYDLEPDSELTGGT------WYTDQDLDVEFIEV--LKQICVRFLE 183 (297)
T ss_pred cCCCceEEEEecccccccccCCc------ccccccccHHHHHH--HHHHHHHHHH
Confidence 468999999975 567888774 66644 4656655 8888885443
No 15
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=24.78 E-value=47 Score=32.99 Aligned_cols=43 Identities=14% Similarity=0.480 Sum_probs=35.3
Q ss_pred CCCch----hHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhcc
Q 040497 19 LGDIP----ESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWEN 61 (295)
Q Consensus 19 ~~~LP----e~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~ 61 (295)
++-|| |.....|||++...+.|.+-.||+..+.+-....+|.+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 45689 88888999999999999999999998877655555543
No 16
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=24.76 E-value=3.3e+02 Score=20.96 Aligned_cols=65 Identities=25% Similarity=0.427 Sum_probs=38.6
Q ss_pred CCCcEEEEEEEEecccccccCceeecccccccCCCCCeEEEEeecCCc-eeeeEEecccCccccCCCccccCceEEEEee
Q 040497 166 PADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQ-QASSECYLDKMEQDDANGYHKRGCWIDYKVG 244 (295)
Q Consensus 166 p~t~Y~ay~v~kl~~~~~~~g~~~~~~~~~~Gwd~~Pv~~~l~~~~g~-~~~~~~~l~~~~~~~~~~~~~rdgW~EielG 244 (295)
|+.+|.+.|-++.. .. .++.+.+...++. ... .... .....+.|-++++
T Consensus 60 ~G~~Y~~s~~vk~~--------------~~-----~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~W~~~s~- 109 (131)
T PF02018_consen 60 PGKTYTVSFWVKAD--------------SG-----GTVSVSLRDEDGSPYNW---YTGQ-------TVTITGEWTKYSG- 109 (131)
T ss_dssp TTSEEEEEEEEEES--------------SS-----EEEEEEEEESSTTTEEE---EEEE-------EEEETSSEEEEEE-
T ss_pred CCCEEEEEEEEEeC--------------CC-----CEEEEEEEEcCCCCcEE---EEEE-------EEECCCCcEEEEE-
Confidence 88999999988762 11 3666777666552 111 1100 0012379999995
Q ss_pred eEEecCCCCCeEEEEEEE
Q 040497 245 EFVVHDSEPATEVQFSMK 262 (295)
Q Consensus 245 eF~~~~~~~~~eV~fsl~ 262 (295)
+|.... ....+.|.+.
T Consensus 110 ~ft~~~--~~~~~~l~~~ 125 (131)
T PF02018_consen 110 TFTAPS--DDDTVRLYFE 125 (131)
T ss_dssp EEEEES--SCEEEEEEEE
T ss_pred EEEECC--CCceEEEEEE
Confidence 898873 3456666543
No 17
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=22.90 E-value=55 Score=31.11 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=34.8
Q ss_pred CccccCceEEEEeeeEEecC----C--CCCeEEEEEE-EEeeCCCccccEEEEEEEEE
Q 040497 231 GYHKRGCWIDYKVGEFVVHD----S--EPATEVQFSM-KQIDCTHSKGGLCVDSVFII 281 (295)
Q Consensus 231 ~~~~rdgW~EielGeF~~~~----~--~~~~eV~fsl-~E~~~~~wK~GLiV~GIeIR 281 (295)
..|.+|=|+.-.-|+|+.-+ + +-+..+-||+ .++++|.|| ||+|++|-
T Consensus 251 cDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~k~g~wk---iVqgl~id 305 (332)
T KOG1496|consen 251 CDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTIKNGDWK---IVQGLPID 305 (332)
T ss_pred hhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEecCCceE---EEcCcchh
Confidence 35667888888888888632 1 1234567888 778899999 89999884
Done!