Query 040497
Match_columns 295
No_of_seqs 176 out of 357
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 6E-09 2E-13 72.4 3.7 47 16-62 6-52 (53)
2 3l2o_B F-box only protein 4; s 98.4 7.2E-08 2.5E-12 90.3 2.5 79 18-97 4-97 (312)
3 2e31_A FBS1, F-box only protei 97.8 9.7E-06 3.3E-10 75.7 3.8 82 16-100 48-131 (297)
4 2ovr_B FBW7, F-BOX/WD repeat p 97.7 1.2E-05 4.2E-10 75.1 1.9 49 16-64 16-64 (445)
5 3v7d_B Cell division control p 97.3 3.6E-05 1.2E-09 71.8 0.1 45 19-63 15-60 (464)
6 1p22_A F-BOX/WD-repeat protein 97.3 3.4E-05 1.2E-09 72.1 -0.5 48 19-66 11-62 (435)
7 2ast_B S-phase kinase-associat 96.8 0.00054 1.8E-08 61.9 3.0 48 15-62 5-52 (336)
8 2p1m_B Transport inhibitor res 94.1 0.024 8.1E-07 54.9 3.0 35 18-52 5-40 (594)
9 3ogk_B Coronatine-insensitive 91.9 0.07 2.4E-06 51.6 2.7 33 20-52 14-47 (592)
10 4hfx_A Transcription elongatio 83.5 0.42 1.4E-05 37.3 1.6 63 22-92 13-75 (97)
11 1dyo_A Endo-1,4-beta-xylanase 33.9 1.8E+02 0.0063 23.3 10.6 46 235-285 113-158 (160)
12 2lde_A Sarafotoxin-I3; endothe 22.3 23 0.00078 20.9 0.4 11 121-131 16-26 (26)
13 2xom_A Arabinogalactan endo-1, 20.9 3.2E+02 0.011 21.8 10.8 40 237-283 111-151 (152)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.74 E-value=6e-09 Score=72.41 Aligned_cols=47 Identities=21% Similarity=0.483 Sum_probs=40.5
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccC
Q 040497 16 GPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENK 62 (295)
Q Consensus 16 ~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~f 62 (295)
...+.+||++++..|+++++|.|.+++++||+.|+.++.++.+|+++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 45789999999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.41 E-value=7.2e-08 Score=90.26 Aligned_cols=79 Identities=14% Similarity=0.294 Sum_probs=61.5
Q ss_pred CCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCCch---hhhcCCCCcc----------C--CCc
Q 040497 18 GLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQ---DLLDLMPPER----------Y--LNL 82 (295)
Q Consensus 18 ~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~---~i~~~~~~~~----------~--~~~ 82 (295)
.|++||.+++-+|+||++|.|+||+++||+.+|..|+.+.+|+.||-+|++ +|...+.|.. . .+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~ 83 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFF 83 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CC
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCccccccccccc
Confidence 478999999999999999999999999999999999999999999988754 3433222100 0 134
Q ss_pred cHHHHHHHhcCCCcc
Q 040497 83 SKKEIFALLSRPVPF 97 (295)
Q Consensus 83 skKely~~Lc~p~ll 97 (295)
.++.+|.+=| |.|+
T Consensus 84 ~~~~~y~~~~-p~l~ 97 (312)
T 3l2o_B 84 DYMAVYRMCC-PYLI 97 (312)
T ss_dssp CHHHHHHHHC-TTCC
T ss_pred cHHHHHHhcC-hhhh
Confidence 5799999965 4343
No 3
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.81 E-value=9.7e-06 Score=75.69 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=61.7
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHH-HHhhhhHHhhcccCchhhhccCCCCCchhhhcCCCCccCCCccHHHHHHHhc-C
Q 040497 16 GPGLGDIPESCVACVFMYLTPPEIC-NLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLS-R 93 (295)
Q Consensus 16 ~~~~~~LPe~cia~ils~tsP~d~c-r~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~skKely~~Lc-~ 93 (295)
+..+..||++.+..||+++.|+|.+ |+++||+.+|..++++.+|.+.+... .+..... ..++..+-|.+|+.-- .
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~-~~~~~~~Wk~~y~~~~~g 124 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGS-ADEERDHWQQFYFLSKRR 124 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC------CCSCHHHHHHHHHHC
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Ccccccc-cCCCCCChhhhheheecc
Confidence 4678999999999999999999999 99999999999999999999987654 1111111 1123456899998743 3
Q ss_pred CCccCCC
Q 040497 94 PVPFDDG 100 (295)
Q Consensus 94 p~lld~g 100 (295)
-+||.+.
T Consensus 125 RNLL~NP 131 (297)
T 2e31_A 125 RNLLRNP 131 (297)
T ss_dssp CCCSSCS
T ss_pred cceeecC
Confidence 4666653
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.65 E-value=1.2e-05 Score=75.07 Aligned_cols=49 Identities=20% Similarity=0.355 Sum_probs=45.1
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCC
Q 040497 16 GPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLP 64 (295)
Q Consensus 16 ~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP 64 (295)
.--|..||++++..|++|++|.|.|++++||+.|+.+++++.+|.+++-
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 3457899999999999999999999999999999999999999997763
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.30 E-value=3.6e-05 Score=71.84 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=42.3
Q ss_pred CCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCc-hhhhccCC
Q 040497 19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASS-DSVWENKL 63 (295)
Q Consensus 19 ~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~s-D~vW~~fl 63 (295)
|..||++.+..|++|++|+|.|++++||+.++..+++ +.+|.+++
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5679999999999999999999999999999998887 89999876
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.27 E-value=3.4e-05 Score=72.10 Aligned_cols=48 Identities=13% Similarity=0.392 Sum_probs=43.9
Q ss_pred CCCchhH----HHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCC
Q 040497 19 LGDIPES----CVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSN 66 (295)
Q Consensus 19 ~~~LPe~----cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d 66 (295)
|..||++ .+..|++|++|.|.|++++||+.|+..++.+.+|.+++..+
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 5679999 99999999999999999999999999999999999876543
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.80 E-value=0.00054 Score=61.87 Aligned_cols=48 Identities=21% Similarity=0.456 Sum_probs=41.8
Q ss_pred CCCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccC
Q 040497 15 MGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENK 62 (295)
Q Consensus 15 ~~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~f 62 (295)
....+++||++++..|+++++++|.++++.||+.|+.++.+...|.++
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 467789999999999999999999999999999999998766677754
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.08 E-value=0.024 Score=54.90 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCCCchhHHHHHHHhcCC-hHHHHHHhhhhHHhhcc
Q 040497 18 GLGDIPESCVACVFMYLT-PPEICNLARLNRAFRGA 52 (295)
Q Consensus 18 ~~~~LPe~cia~ils~ts-P~d~cr~a~vs~~fr~a 52 (295)
.+++||++++.+|++|++ ++|++++|.||+.++.+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 478999999999999999 99999999999999987
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.93 E-value=0.07 Score=51.62 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCchhHHHHHHHhcC-ChHHHHHHhhhhHHhhcc
Q 040497 20 GDIPESCVACVFMYL-TPPEICNLARLNRAFRGA 52 (295)
Q Consensus 20 ~~LPe~cia~ils~t-sP~d~cr~a~vs~~fr~a 52 (295)
.+||++++.+|++|+ +++|+++++.||+.|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 479999999999999 899999999999999887
No 10
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=83.48 E-value=0.42 Score=37.31 Aligned_cols=63 Identities=17% Similarity=0.320 Sum_probs=39.3
Q ss_pred chhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCCchhhhcCCCCccCCCccHHHHHHHhc
Q 040497 22 IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLS 92 (295)
Q Consensus 22 LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~skKely~~Lc 92 (295)
.|-+.+.-||-..||....++-.-|+.+ +-++|-+|.+++-.||+.-. ....-|-+++|++|.
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~------p~e~esWRelY~rl~ 75 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER------PEEYESWREMYLRLQ 75 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC------CCSSSCHHHHHHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC------CCCCCCHHHHHHHHH
Confidence 5888889999999999999999999976 67899999999999998431 124468999999986
No 11
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=33.92 E-value=1.8e+02 Score=23.30 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=30.4
Q ss_pred cCceEEEEeeeEEecCCCCCeEEEEEEEEeeCCCccccEEEEEEEEEeccc
Q 040497 235 RGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNL 285 (295)
Q Consensus 235 rdgW~EielGeF~~~~~~~~~eV~fsl~E~~~~~wK~GLiV~GIeIRPk~~ 285 (295)
.++|.+++-|.|..... ...+.+-+ |. ..-..=+.|+.|.|.|...
T Consensus 113 ~~~W~~L~G~~ft~~~~--~~~~~lyv-e~--~~~~~d~yiDdv~i~~~g~ 158 (160)
T 1dyo_A 113 PNQWVHLYNPQYRIPSD--ATDMYVYV-ET--ADDTINFYIDEAIGAVAGT 158 (160)
T ss_dssp SSCCEEEEEEEEECCTT--CEEEEEEE-EE--SSCCCCEEEEEEEEEETTC
T ss_pred CCccEEEECcEEEeCCC--CCEEEEEE-EC--CCCCccEEEEEEEEEeCcc
Confidence 37899999889998643 22333322 33 2334558999999998753
No 12
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=22.29 E-value=23 Score=20.90 Aligned_cols=11 Identities=0% Similarity=-0.007 Sum_probs=7.1
Q ss_pred cceeecCCCCC
Q 040497 121 AMAITGIEDRR 131 (295)
Q Consensus 121 ~L~ItWgdd~~ 131 (295)
.|.|+|.++|+
T Consensus 16 hlDiIWvntp~ 26 (26)
T 2lde_A 16 HKDVIWVNRNX 26 (26)
T ss_dssp STTCSTTTCC-
T ss_pred cccEEEecCCC
Confidence 36777877764
No 13
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A*
Probab=20.95 E-value=3.2e+02 Score=21.80 Aligned_cols=40 Identities=8% Similarity=0.212 Sum_probs=28.7
Q ss_pred ceEEEEeeeEEecCCCCCeEEEEEEEE-eeCCCccccEEEEEEEEEec
Q 040497 237 CWIDYKVGEFVVHDSEPATEVQFSMKQ-IDCTHSKGGLCVDSVFIIPS 283 (295)
Q Consensus 237 gW~EielGeF~~~~~~~~~eV~fsl~E-~~~~~wK~GLiV~GIeIRPk 283 (295)
.|-.+.+-+|.+.. +.++++++- -..++| +-|+-+++.+.
T Consensus 111 ~w~~~~i~~i~v~~----G~~~Ig~~~~~~~g~W---~~iDd~~L~~~ 151 (152)
T 2xom_A 111 EWKNPEIRNIKVET----GRIKITVSVEGRAGDW---GFIDDFYLFRE 151 (152)
T ss_dssp EEECCEEEEEEECS----SEEEEEEEEEECTTCE---EEEEEEEEEEC
T ss_pred cccEEEEeEEEEeC----CeEEEEEEEEcCCCCe---EEEEEEEEEEc
Confidence 67778888888853 467777743 345666 78999998765
Done!