BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040502
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 83/104 (79%)
Query: 8 ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFT 67
E +KGPW+ EEDQ ++KLVQ+YG + WSVI+K + GR GK CR RW N L+PEV+ ++T
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 68 PDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
+ED II +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 83/104 (79%)
Query: 8 ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFT 67
E +KGPW+ EEDQ ++KLVQ+YG + WSVI+K + GR GK CR RW N L+PEV+ ++T
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 68 PDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
+ED II +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 82/102 (80%)
Query: 10 VKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPD 69
+KGPW+ EEDQ ++KLVQ+YG + WSVI+K + GR GK CR RW N L+PEV+ ++T +
Sbjct: 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 70 EDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
ED II +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 83/106 (78%)
Query: 6 VSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRT 65
+ + VKGPW+ EEDQ +++LV++YG + W++I+K + GR GK CR RW N L+PEV+ +
Sbjct: 2 IPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSS 61
Query: 66 FTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
+T +ED II +AH GN+WA IA+LL GRTDNA+KNHWNST+KRK
Sbjct: 62 WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 79/101 (78%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDE 70
KGPW+ EEDQ +++ VQ+YG + WS I+K + GR GK CR RW N L+PEV+ ++T +E
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 71 DEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
D II +AH R GN+WA IA+LL GRTDNA+KNHWNST++RK
Sbjct: 87 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEV 61
K W+ EED+++ + +R G R W+ I+K +PGR+ + + W + + +V
Sbjct: 79 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 70/104 (67%)
Query: 10 VKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPD 69
+KGP++ ED L+ + V+ G +NW I+ +P RS K CR RW N L P V +TP+
Sbjct: 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 70 EDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYA 113
EDE I + + + G+KW+ IA+L+ GRTDNAIKN WNS++ ++ +
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDE 70
K ++PEED++L + V ++G+ +W +I+ + P R+ + CR RW N L+P + H +T +E
Sbjct: 11 KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 71 DEIIIKAHARYGNKWATIARLLNGRTDNAIKNHW 104
D ++++ YG +WA IA+ GRTD IKN W
Sbjct: 70 DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 66 FTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSA 119
FTP+EDE++ +A A++G+ W IA R ++ W + L + T +A
Sbjct: 14 FTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 57/88 (64%)
Query: 17 EEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIK 76
EED L +LV RYGA++W IS+ + R+ + CR RW N ++P + ++P+ED ++ +
Sbjct: 7 EEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQ 66
Query: 77 AHARYGNKWATIARLLNGRTDNAIKNHW 104
+A YG KW I++ L R+DN I+N W
Sbjct: 67 KYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 43/52 (82%)
Query: 60 EVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
EV+ ++T +ED I+ +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEV 61
K W+ EED++L + +R G R W+ I+K +PGR+ + + W + + +V
Sbjct: 5 KTSWTEEEDRILYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 74.7 bits (182), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/51 (62%), Positives = 40/51 (78%)
Query: 10 VKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPE 60
+KGPW+ EEDQ L+KLVQ+YG + WSVI+K + GR GK CR RW N L+PE
Sbjct: 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 31.6 bits (70), Expect = 0.41, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 66 FTPDEDEIIIKAHARYGNK-WATIARLLNGRTDNAIKNHWNSTL 108
+T +ED+ +IK +YG K W+ IA+ L GR + W++ L
Sbjct: 6 WTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 42/51 (82%)
Query: 61 VEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
V+ ++T +ED II +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEV 61
K W+ EED+++ + +R G R W+ I+K +PGR+ + + W + + +V
Sbjct: 3 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 73.2 bits (178), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 10 VKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPE 60
+KGPW+ EEDQ ++KLVQ+YG + WSVI+K + GR GK CR RW N L+PE
Sbjct: 2 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 32.0 bits (71), Expect = 0.32, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 66 FTPDEDEIIIKAHARYGNK-WATIARLLNGRTDNAIKNHWNSTL 108
+T +ED+ +IK +YG K W+ IA+ L GR + W++ L
Sbjct: 6 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 71.6 bits (174), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 10 VKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPE 60
+KGPW+ EEDQ +++LVQ+YG + WSVI+K + GR GK CR RW N L+PE
Sbjct: 2 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 30.4 bits (67), Expect = 0.91, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 66 FTPDEDEIIIKAHARYGNK-WATIARLLNGRTDNAIKNHWNSTL 108
+T +ED+ +I+ +YG K W+ IA+ L GR + W++ L
Sbjct: 6 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPE 60
K W+ EED+ L KLV++ G +W VI+ +P R+ C+ RW L+PE
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPE 60
K W+ EED+ L KLV++ G +W VI+ +P R+ C+ RW L+PE
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLS 58
K W+ EED+ L LV+++G ++W ++ P R+ + C+ RW LS
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 14 WSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFT 67
W ED++L V +YG WS I+ + +S K C+ RW L P ++ ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIP--GRSGKSCRLRW 53
K W+ EE + + VQ+YG NW+ ISK+ P R+ + RW
Sbjct: 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIP--GRSGKSCRLRW 53
K W+ EE + + VQ+YG NW+ ISK+ P R+ + RW
Sbjct: 14 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 58
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIP--GRSGKSCRLRW 53
K W+ EE + + VQ+YG NW+ ISK+ P R+ + RW
Sbjct: 10 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 54
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 13 PWSPEEDQLLLKLVQRYGARN---WSVISKSIPGRSGKSCRLRW 53
PW+ EE +LL + ++ Y W I++++PGR+ K C R+
Sbjct: 5 PWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRY 48
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIP--GRSGKSCRLRW 53
K W+ EE + + VQ+YG NW+ ISK+ P R+ + RW
Sbjct: 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIP 42
K W+ EE + + VQ+YG NW+ ISK+ P
Sbjct: 2 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYP 33
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 66 FTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKN 102
+TP+E E + + ++GN WATI L GR+ +++K+
Sbjct: 26 YTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKD 61
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 66 FTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
+T +E E+ + A++G +W I++L+ RT +K++ K K
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK 57
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 64 RTFTPDEDEIIIKAHARYG----NKWATIARLLNGRTDNAIKNHW 104
R ++ E++ +A A Y ++WA +AR + GRT +K H+
Sbjct: 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,310,656
Number of Sequences: 62578
Number of extensions: 225442
Number of successful extensions: 557
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 50
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)