Query 040502
Match_columns 252
No_of_seqs 345 out of 1328
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:31:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.4E-35 4.8E-40 230.4 8.8 105 8-112 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 2.7E-35 9.3E-40 237.8 8.1 108 10-117 1-108 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.6E-35 1.6E-39 228.7 8.7 103 11-113 1-103 (107)
4 3osg_A MYB21; transcription-DN 100.0 3.5E-34 1.2E-38 229.9 8.7 106 4-110 4-109 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 3E-34 1E-38 230.6 7.5 107 6-112 22-128 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.3E-32 4.5E-37 228.5 5.3 134 8-153 3-137 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.7E-32 1.6E-36 225.2 7.8 107 6-112 53-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 8.5E-24 2.9E-28 169.5 5.9 105 37-153 1-106 (128)
9 2dim_A Cell division cycle 5-l 99.9 3.5E-23 1.2E-27 149.7 2.5 68 4-71 2-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 1.2E-19 4.1E-24 158.2 6.6 106 6-111 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 1.8E-18 6.1E-23 126.1 6.0 59 48-107 8-66 (73)
12 2d9a_A B-MYB, MYB-related prot 99.7 9.1E-19 3.1E-23 122.7 2.8 58 5-62 2-59 (60)
13 2juh_A Telomere binding protei 99.7 5.3E-19 1.8E-23 140.3 1.4 83 5-87 11-103 (121)
14 1gvd_A MYB proto-oncogene prot 99.7 1.5E-18 5.1E-23 118.2 2.6 52 9-60 1-52 (52)
15 2roh_A RTBP1, telomere binding 99.7 2.7E-18 9.2E-23 136.5 3.9 79 6-84 26-114 (122)
16 2din_A Cell division cycle 5-l 99.7 1.5E-17 5.1E-22 118.7 7.0 59 56-115 2-60 (66)
17 1ity_A TRF1; helix-turn-helix, 99.7 2.7E-18 9.2E-23 123.6 1.9 65 3-67 2-68 (69)
18 1guu_A C-MYB, MYB proto-oncoge 99.7 3.3E-18 1.1E-22 116.4 1.3 51 10-60 2-52 (52)
19 2cu7_A KIAA1915 protein; nucle 99.7 5.9E-17 2E-21 117.5 7.4 58 57-114 3-60 (72)
20 2d9a_A B-MYB, MYB-related prot 99.7 4.5E-17 1.5E-21 114.0 5.9 55 58-112 3-58 (60)
21 2dim_A Cell division cycle 5-l 99.7 3.9E-17 1.3E-21 117.8 5.3 61 58-118 4-65 (70)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 1.6E-16 5.5E-21 108.0 6.0 50 61-110 1-51 (52)
23 3sjm_A Telomeric repeat-bindin 99.6 1.4E-17 4.8E-22 118.4 0.6 56 7-62 7-64 (64)
24 1x41_A Transcriptional adaptor 99.6 3.1E-17 1E-21 115.0 1.9 56 5-60 2-57 (60)
25 1gvd_A MYB proto-oncogene prot 99.6 2.7E-16 9.2E-21 106.9 5.6 50 61-110 1-51 (52)
26 1ity_A TRF1; helix-turn-helix, 99.6 5.2E-16 1.8E-20 111.6 6.8 60 56-115 3-65 (69)
27 1w0t_A Telomeric repeat bindin 99.6 6.6E-16 2.3E-20 105.5 6.5 49 62-110 1-52 (53)
28 1x41_A Transcriptional adaptor 99.6 8.4E-16 2.9E-20 107.7 7.1 53 58-110 3-56 (60)
29 1w0t_A Telomeric repeat bindin 99.6 9E-17 3.1E-21 109.8 1.0 49 10-58 1-51 (53)
30 3osg_A MYB21; transcription-DN 99.6 1.4E-16 4.9E-21 127.2 2.0 117 58-188 6-124 (126)
31 3sjm_A Telomeric repeat-bindin 99.6 1.8E-15 6.3E-20 107.4 6.5 52 61-112 9-63 (64)
32 2elk_A SPCC24B10.08C protein; 99.6 2.5E-16 8.7E-21 109.7 1.5 51 7-57 5-56 (58)
33 2yum_A ZZZ3 protein, zinc fing 99.6 1.5E-16 5.3E-21 116.0 0.1 62 5-66 2-68 (75)
34 2din_A Cell division cycle 5-l 99.6 9.4E-17 3.2E-21 114.5 -1.1 58 6-65 4-61 (66)
35 2yum_A ZZZ3 protein, zinc fing 99.6 2.6E-15 8.9E-20 109.5 6.1 57 58-114 3-65 (75)
36 2elk_A SPCC24B10.08C protein; 99.6 7E-15 2.4E-19 102.3 7.4 50 59-108 5-56 (58)
37 2cu7_A KIAA1915 protein; nucle 99.6 3.2E-16 1.1E-20 113.6 -0.0 59 4-63 2-60 (72)
38 1gv2_A C-MYB, MYB proto-oncoge 99.5 3.8E-15 1.3E-19 114.9 4.9 82 61-154 2-84 (105)
39 2k9n_A MYB24; R2R3 domain, DNA 99.5 1.2E-14 4.2E-19 112.8 6.3 78 63-152 1-79 (107)
40 2ltp_A Nuclear receptor corepr 99.3 1E-15 3.5E-20 115.5 0.0 56 56-111 9-64 (89)
41 2aje_A Telomere repeat-binding 99.5 1.4E-14 4.7E-19 112.4 3.7 78 5-82 7-94 (105)
42 3zqc_A MYB3; transcription-DNA 99.5 1.2E-14 4.1E-19 116.7 3.5 81 63-155 2-83 (131)
43 2ckx_A NGTRF1, telomere bindin 99.5 1.6E-14 5.5E-19 107.6 3.5 69 12-80 1-79 (83)
44 2llk_A Cyclin-D-binding MYB-li 99.5 1.2E-14 3.9E-19 105.9 1.9 54 6-62 18-71 (73)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.3E-13 4.5E-18 100.3 5.0 51 59-109 14-68 (73)
46 2yus_A SWI/SNF-related matrix- 99.4 2.4E-13 8.1E-18 100.4 5.7 48 60-107 15-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.4 6.2E-14 2.1E-18 103.5 2.0 50 6-56 13-62 (79)
48 2ltp_A Nuclear receptor corepr 99.1 3.2E-14 1.1E-18 107.3 0.0 54 5-59 10-63 (89)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.4 7.2E-14 2.5E-18 101.7 0.1 54 5-58 12-68 (73)
50 2ckx_A NGTRF1, telomere bindin 99.4 1.3E-12 4.3E-17 97.3 6.7 48 64-111 1-53 (83)
51 2juh_A Telomere binding protei 99.3 3.4E-12 1.2E-16 101.2 6.2 55 56-110 10-69 (121)
52 1ign_A Protein (RAP1); RAP1,ye 99.3 1.6E-12 5.4E-17 113.5 4.2 55 59-113 4-64 (246)
53 2aje_A Telomere repeat-binding 99.3 4.4E-12 1.5E-16 98.3 6.2 54 58-111 8-66 (105)
54 1x58_A Hypothetical protein 49 99.3 5.1E-12 1.7E-16 88.5 5.9 50 61-110 6-58 (62)
55 2roh_A RTBP1, telomere binding 99.2 1.5E-11 5E-16 97.7 7.6 54 58-111 26-84 (122)
56 2cjj_A Radialis; plant develop 99.2 1.1E-11 3.6E-16 94.2 6.4 50 62-111 7-60 (93)
57 2cjj_A Radialis; plant develop 99.1 9.1E-12 3.1E-16 94.5 -0.3 49 9-57 6-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.1 2.9E-10 1E-14 79.6 6.3 48 62-109 11-58 (61)
59 1x58_A Hypothetical protein 49 99.0 7.5E-11 2.6E-15 82.6 2.1 51 7-58 4-57 (62)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.9 3E-09 1E-13 76.9 6.6 50 60-110 5-58 (72)
61 3hm5_A DNA methyltransferase 1 98.9 2.2E-09 7.7E-14 81.1 6.0 65 47-115 18-87 (93)
62 2eqr_A N-COR1, N-COR, nuclear 98.9 5E-10 1.7E-14 78.4 2.1 49 7-56 8-56 (61)
63 2iw5_B Protein corest, REST co 98.8 5.9E-09 2E-13 90.2 7.4 49 62-110 132-180 (235)
64 2xag_B REST corepressor 1; ami 98.7 2E-08 6.7E-13 95.8 6.2 46 64-109 381-426 (482)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.7 2.9E-09 9.9E-14 77.0 0.4 51 6-57 3-56 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.6 6.2E-08 2.1E-12 70.1 6.0 47 63-109 8-58 (73)
67 1fex_A TRF2-interacting telome 98.6 6.7E-09 2.3E-13 72.3 0.6 48 11-58 2-58 (59)
68 1fex_A TRF2-interacting telome 98.5 1E-07 3.4E-12 66.3 4.6 47 63-109 2-58 (59)
69 2iw5_B Protein corest, REST co 98.5 3.2E-08 1.1E-12 85.6 1.9 51 7-58 129-179 (235)
70 1wgx_A KIAA1903 protein; MYB D 98.4 5.5E-08 1.9E-12 70.4 1.6 48 12-59 9-59 (73)
71 2yqk_A Arginine-glutamic acid 98.1 5.1E-06 1.8E-10 58.2 6.4 48 59-106 5-53 (63)
72 1ug2_A 2610100B20RIK gene prod 98.1 1.5E-05 5E-10 59.5 8.8 46 65-110 35-83 (95)
73 1ofc_X ISWI protein; nuclear p 98.1 1.3E-05 4.3E-10 72.6 9.4 99 12-110 111-275 (304)
74 4eef_G F-HB80.4, designed hema 98.1 7.3E-07 2.5E-11 64.2 0.7 44 11-54 20-66 (74)
75 4eef_G F-HB80.4, designed hema 98.0 9.4E-07 3.2E-11 63.7 0.3 43 63-105 20-66 (74)
76 2lr8_A CAsp8-associated protei 97.2 9.8E-07 3.4E-11 62.5 0.0 45 65-110 16-63 (70)
77 2yqk_A Arginine-glutamic acid 97.9 4.9E-06 1.7E-10 58.3 2.5 50 4-54 2-52 (63)
78 4iej_A DNA methyltransferase 1 97.8 6.3E-05 2.2E-09 56.6 7.1 52 64-115 31-87 (93)
79 4a69_C Nuclear receptor corepr 97.8 3.7E-05 1.3E-09 58.0 5.8 44 63-106 43-86 (94)
80 2crg_A Metastasis associated p 97.7 6.5E-05 2.2E-09 53.7 6.2 43 63-105 8-51 (70)
81 2xag_B REST corepressor 1; ami 97.6 1.5E-05 5.3E-10 76.0 1.6 48 8-56 377-424 (482)
82 3hm5_A DNA methyltransferase 1 97.6 1.7E-05 5.8E-10 59.8 1.1 45 12-57 31-80 (93)
83 4a69_C Nuclear receptor corepr 97.4 4.2E-05 1.5E-09 57.7 1.5 43 11-54 43-85 (94)
84 2crg_A Metastasis associated p 97.4 7.1E-05 2.4E-09 53.4 2.6 46 8-54 5-51 (70)
85 2ebi_A DNA binding protein GT- 97.4 0.00016 5.6E-09 53.1 4.5 48 63-110 4-65 (86)
86 2lr8_A CAsp8-associated protei 96.4 4E-05 1.4E-09 54.2 0.0 45 13-58 16-62 (70)
87 2y9y_A Imitation switch protei 97.1 0.00075 2.6E-08 62.5 6.7 99 12-110 124-291 (374)
88 4b4c_A Chromodomain-helicase-D 96.9 0.00076 2.6E-08 57.2 4.8 104 7-110 3-196 (211)
89 1ug2_A 2610100B20RIK gene prod 96.7 0.00021 7.4E-09 53.3 -0.4 45 12-56 34-80 (95)
90 2ebi_A DNA binding protein GT- 96.6 0.00016 5.5E-09 53.2 -1.6 49 9-57 2-63 (86)
91 4iej_A DNA methyltransferase 1 94.5 0.01 3.5E-07 44.5 1.1 44 12-56 31-79 (93)
92 1irz_A ARR10-B; helix-turn-hel 94.5 0.16 5.5E-06 35.4 7.1 46 62-107 6-56 (64)
93 1ofc_X ISWI protein; nuclear p 93.6 0.087 3E-06 47.5 5.5 48 63-110 110-158 (304)
94 1irz_A ARR10-B; helix-turn-hel 92.6 0.039 1.4E-06 38.5 1.3 50 6-55 2-55 (64)
95 2xb0_X Chromo domain-containin 92.0 0.46 1.6E-05 42.0 7.8 27 64-90 169-196 (270)
96 4b4c_A Chromodomain-helicase-D 91.7 0.24 8.1E-06 41.5 5.5 49 62-110 6-59 (211)
97 2xb0_X Chromo domain-containin 91.1 0.11 3.9E-06 46.0 2.9 28 12-39 169-196 (270)
98 2o8x_A Probable RNA polymerase 74.6 7.8 0.00027 25.5 5.7 43 66-110 16-58 (70)
99 1ku3_A Sigma factor SIGA; heli 72.3 9.4 0.00032 25.8 5.8 41 69-110 13-57 (73)
100 2li6_A SWI/SNF chromatin-remod 71.9 4.4 0.00015 30.9 4.3 38 73-110 53-98 (116)
101 3cz6_A DNA-binding protein RAP 70.4 3.6 0.00012 33.7 3.6 25 6-30 109-141 (168)
102 2lm1_A Lysine-specific demethy 68.2 11 0.00036 28.0 5.7 38 73-110 48-97 (107)
103 2p7v_B Sigma-70, RNA polymeras 68.1 16 0.00055 24.2 6.2 41 70-111 9-53 (68)
104 2jrz_A Histone demethylase jar 67.2 9.7 0.00033 29.0 5.4 38 73-110 44-93 (117)
105 1kkx_A Transcription regulator 65.5 7 0.00024 30.2 4.2 37 74-110 53-97 (123)
106 2cxy_A BAF250B subunit, HBAF25 62.7 13 0.00046 28.4 5.4 38 73-110 55-104 (125)
107 2eqy_A RBP2 like, jumonji, at 62.6 13 0.00046 28.4 5.4 38 73-110 46-95 (122)
108 3hug_A RNA polymerase sigma fa 58.7 22 0.00075 25.0 5.7 40 70-110 41-80 (92)
109 2jxj_A Histone demethylase jar 58.2 9 0.00031 27.8 3.6 38 73-110 40-89 (96)
110 2y9y_A Imitation switch protei 57.8 14 0.0005 33.9 5.5 48 64-112 124-173 (374)
111 3i4p_A Transcriptional regulat 54.2 17 0.00057 28.6 4.8 45 69-114 3-48 (162)
112 1c20_A DEAD ringer protein; DN 53.6 24 0.00084 27.0 5.5 39 72-110 55-106 (128)
113 2kk0_A AT-rich interactive dom 52.5 22 0.00076 28.0 5.2 38 73-110 68-118 (145)
114 1tty_A Sigma-A, RNA polymerase 51.6 35 0.0012 23.7 5.8 40 70-110 22-65 (87)
115 1ig6_A MRF-2, modulator recogn 49.4 12 0.00042 27.7 3.1 38 73-110 37-87 (107)
116 3e7l_A Transcriptional regulat 48.0 44 0.0015 21.9 5.5 34 69-103 19-52 (63)
117 1x3u_A Transcriptional regulat 47.9 43 0.0015 22.3 5.6 42 66-110 17-58 (79)
118 1fse_A GERE; helix-turn-helix 47.1 46 0.0016 21.7 5.6 43 65-110 11-53 (74)
119 3ulq_B Transcriptional regulat 47.0 57 0.0019 23.1 6.3 45 63-110 27-71 (90)
120 2rq5_A Protein jumonji; develo 46.5 29 0.00099 26.6 4.9 78 8-110 4-96 (121)
121 3c57_A Two component transcrip 45.2 53 0.0018 23.3 6.0 43 65-110 27-69 (95)
122 1je8_A Nitrate/nitrite respons 43.7 53 0.0018 22.6 5.6 43 65-110 21-63 (82)
123 1or7_A Sigma-24, RNA polymeras 43.6 44 0.0015 26.0 5.8 29 81-110 155-183 (194)
124 2dbb_A Putative HTH-type trans 42.6 50 0.0017 25.1 5.8 45 69-114 9-54 (151)
125 2e1c_A Putative HTH-type trans 41.6 47 0.0016 26.4 5.7 45 68-113 26-71 (171)
126 1xsv_A Hypothetical UPF0122 pr 40.2 61 0.0021 23.9 5.8 40 70-110 29-68 (113)
127 2cyy_A Putative HTH-type trans 39.7 59 0.002 24.8 5.9 44 69-113 7-51 (151)
128 3mzy_A RNA polymerase sigma-H 39.3 57 0.0019 24.3 5.6 30 80-110 122-151 (164)
129 2jpc_A SSRB; DNA binding prote 38.5 72 0.0025 20.0 5.3 38 71-110 3-40 (61)
130 1ntc_A Protein (nitrogen regul 37.9 62 0.0021 22.9 5.3 35 68-103 50-84 (91)
131 2rnj_A Response regulator prot 37.0 62 0.0021 22.5 5.2 43 65-110 29-71 (91)
132 1s7o_A Hypothetical UPF0122 pr 34.9 96 0.0033 22.9 6.2 42 66-109 23-64 (113)
133 1rp3_A RNA polymerase sigma fa 34.6 68 0.0023 25.6 5.7 30 80-110 201-230 (239)
134 2cg4_A Regulatory protein ASNC 32.5 87 0.003 23.7 5.8 45 69-114 8-53 (152)
135 2p5v_A Transcriptional regulat 31.5 87 0.003 24.1 5.7 45 69-114 10-55 (162)
136 1umq_A Photosynthetic apparatu 30.1 81 0.0028 22.2 4.7 36 67-103 39-74 (81)
137 1p4w_A RCSB; solution structur 29.2 1.5E+02 0.0052 21.2 6.3 44 64-110 33-76 (99)
138 3cz6_A DNA-binding protein RAP 29.2 57 0.0019 26.5 4.1 41 59-105 110-150 (168)
139 2p1m_A SKP1-like protein 1A; F 28.6 18 0.00062 28.7 1.1 35 35-76 119-153 (160)
140 2yqf_A Ankyrin-1; death domain 28.3 96 0.0033 22.8 5.1 35 67-102 14-48 (111)
141 1i1g_A Transcriptional regulat 27.9 1.1E+02 0.0037 22.7 5.5 43 70-113 5-48 (141)
142 2ia0_A Putative HTH-type trans 27.3 1.1E+02 0.0038 24.0 5.7 46 68-114 16-62 (171)
143 2pn6_A ST1022, 150AA long hypo 27.2 84 0.0029 23.7 4.8 45 69-114 3-48 (150)
144 2q1z_A RPOE, ECF SIGE; ECF sig 26.2 29 0.00099 26.9 1.9 29 81-110 150-178 (184)
145 2o71_A Death domain-containing 25.9 93 0.0032 23.4 4.7 27 73-100 26-52 (115)
146 1qgp_A Protein (double strande 25.7 1E+02 0.0036 21.1 4.6 45 66-111 11-59 (77)
147 2of5_H Leucine-rich repeat and 24.8 87 0.003 23.4 4.3 30 71-101 13-42 (118)
148 1qbj_A Protein (double-strande 23.3 1.5E+02 0.005 20.7 5.0 44 67-111 8-55 (81)
149 2cfx_A HTH-type transcriptiona 23.3 1.6E+02 0.0054 22.1 5.7 45 69-114 5-50 (144)
150 1tc3_C Protein (TC3 transposas 23.1 1.1E+02 0.0039 17.4 6.2 38 65-104 5-42 (51)
151 2of5_A Death domain-containing 23.0 87 0.003 23.5 4.0 28 73-101 26-53 (114)
152 1eto_A FIS, factor for inversi 22.2 1.7E+02 0.0059 21.1 5.4 35 68-103 57-91 (98)
153 3t72_q RNA polymerase sigma fa 21.5 2.1E+02 0.007 20.7 5.7 29 82-111 39-67 (99)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.4e-35 Score=230.44 Aligned_cols=105 Identities=62% Similarity=1.132 Sum_probs=99.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCCChHH
Q 040502 8 ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWAT 87 (252)
Q Consensus 8 ~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~ 87 (252)
+.+||+||+|||++|+++|++||..+|..||..|||||+.||+.||.++|+|.+++++||+|||++|+++|.+||++|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 46899999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhhhh
Q 040502 88 IARLLNGRTDNAIKNHWNSTLKRKY 112 (252)
Q Consensus 88 IA~~lpgRT~~qck~Rw~~~lk~k~ 112 (252)
||+.|||||+++|++||+.++++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHcCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999998763
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.7e-35 Score=237.76 Aligned_cols=108 Identities=44% Similarity=0.882 Sum_probs=104.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCCChHHHH
Q 040502 10 VKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIA 89 (252)
Q Consensus 10 ~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA 89 (252)
+||+||+|||++|+++|.+||..+|..||..|||||+.||+.||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 58999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHhhhhhhhhhh
Q 040502 90 RLLNGRTDNAIKNHWNSTLKRKYAETTR 117 (252)
Q Consensus 90 ~~lpgRT~~qck~Rw~~~lk~k~~~~~~ 117 (252)
+.|||||+++|++||+++|++++....+
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~ 108 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSN 108 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999998876643
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=4.6e-35 Score=228.73 Aligned_cols=103 Identities=36% Similarity=0.727 Sum_probs=99.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCCChHHHHH
Q 040502 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIAR 90 (252)
Q Consensus 11 Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~ 90 (252)
||+||+|||++|+++|.+||..+|..||..||+||++||+.||.++|+|.+++++||+|||++|+++|.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 79999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHhhhhhh
Q 040502 91 LLNGRTDNAIKNHWNSTLKRKYA 113 (252)
Q Consensus 91 ~lpgRT~~qck~Rw~~~lk~k~~ 113 (252)
.|||||+++|++||+.++++..+
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHH
Confidence 99999999999999999887543
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=3.5e-34 Score=229.89 Aligned_cols=106 Identities=35% Similarity=0.777 Sum_probs=101.2
Q ss_pred ccccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCC
Q 040502 4 DSVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGN 83 (252)
Q Consensus 4 ~~~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~ 83 (252)
...+..+||+||+|||++|+++|.+||. +|..||..||+|+++||+.||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 4466788999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 84 KWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 84 ~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
+|+.||+.|||||+++|++||+.++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988875
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=3e-34 Score=230.60 Aligned_cols=107 Identities=57% Similarity=1.042 Sum_probs=102.3
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCCCh
Q 040502 6 VSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKW 85 (252)
Q Consensus 6 ~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W 85 (252)
.+..++|+||+|||++|+++|++||..+|..||..|||||+.||+.||.++|+|.+++++||+|||++|+++|.+||++|
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W 101 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 101 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 57789999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhhh
Q 040502 86 ATIARLLNGRTDNAIKNHWNSTLKRKY 112 (252)
Q Consensus 86 ~~IA~~lpgRT~~qck~Rw~~~lk~k~ 112 (252)
+.||+.|||||+++|++||+.++++++
T Consensus 102 ~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 102 AEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999998753
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.3e-32 Score=228.53 Aligned_cols=134 Identities=31% Similarity=0.570 Sum_probs=83.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCC-ChH
Q 040502 8 ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGN-KWA 86 (252)
Q Consensus 8 ~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~-~W~ 86 (252)
...||+||+|||++|+++|.+||..+|..||..||+|++.||+.||.++|+|.+++++||+|||++|+++|..||. +|.
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 3578999999999999999999988999999999999999999999999999999999999999999999999995 699
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCCCCchHHHHhhhhcccCCCccCCCCC
Q 040502 87 TIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVDEDSEDSDEREKKRSAVSVSGISCSPSGS 153 (252)
Q Consensus 87 ~IA~~lpgRT~~qck~Rw~~~lk~k~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~~~~~~~~s~s~s 153 (252)
.||..|||||+.||++||+++|.+.+... .|+.+++..+...+...|..|+..+.
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~------------~WT~eEd~~L~~~~~~~g~~W~~Ia~ 137 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKT------------SWTEEEDRIIYQAHKRLGNRWAEIAK 137 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCS------------CCCHHHHHHHHHHHHHHCSCHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCcccccc------------CCChHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999998765444 57788888888888777777765444
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=4.7e-32 Score=225.18 Aligned_cols=107 Identities=61% Similarity=1.105 Sum_probs=101.9
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCCCh
Q 040502 6 VSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKW 85 (252)
Q Consensus 6 ~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W 85 (252)
.+..++|+||+|||++|+++|.+||..+|..||..|||||+.||+.||.++|+|.+++++||++||.+|++++.+||++|
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W 132 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 132 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCH
Confidence 46778999999999999999999998789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhhh
Q 040502 86 ATIARLLNGRTDNAIKNHWNSTLKRKY 112 (252)
Q Consensus 86 ~~IA~~lpgRT~~qck~Rw~~~lk~k~ 112 (252)
+.||+.|||||+++|++||+.++++++
T Consensus 133 ~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 133 AEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999998763
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.89 E-value=8.5e-24 Score=169.55 Aligned_cols=105 Identities=26% Similarity=0.501 Sum_probs=73.7
Q ss_pred ccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHHhhhhhhhh
Q 040502 37 ISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGN-KWATIARLLNGRTDNAIKNHWNSTLKRKYAET 115 (252)
Q Consensus 37 Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~~ 115 (252)
||+.|||||+.||+.||.++|+|.+++++||+|||++|+++|..||. +|..||..|+|||+.||++||+++|.+.+.+.
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 78999999999999999999999999999999999999999999995 69999999999999999999999998765544
Q ss_pred hhhhhhcCCCCCCCCchHHHHhhhhcccCCCccCCCCC
Q 040502 116 TRSALAAGVDEDSEDSDEREKKRSAVSVSGISCSPSGS 153 (252)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~rs~~~~~~~~~s~s~s 153 (252)
.|+.+|+..+...+...|..|+..+.
T Consensus 81 ------------~WT~eEd~~L~~~~~~~G~~W~~Ia~ 106 (128)
T 1h8a_C 81 ------------SWTEEEDRIIYQAHKRLGNRWAEIAK 106 (128)
T ss_dssp ------------CCCHHHHHHHHHHHHHHCSCHHHHGG
T ss_pred ------------cCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 57788888888888777777765544
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.5e-23 Score=149.66 Aligned_cols=68 Identities=29% Similarity=0.618 Sum_probs=65.2
Q ss_pred ccccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCCCChHHH
Q 040502 4 DSVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDED 71 (252)
Q Consensus 4 ~~~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED 71 (252)
++.+..++|+||+|||++|+++|.+||..+|..||..|++||++||+.||.++|+|.+++++||+|||
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46788999999999999999999999987899999999999999999999999999999999999998
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.78 E-value=1.2e-19 Score=158.24 Aligned_cols=106 Identities=27% Similarity=0.450 Sum_probs=92.4
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCCCC-----cccccccccccccccccccccccCCCccc------------------
Q 040502 6 VSERVKGPWSPEEDQLLLKLVQRYGARN-----WSVISKSIPGRSGKSCRLRWCNQLSPEVE------------------ 62 (252)
Q Consensus 6 ~~~~~Kg~WT~eED~~L~~~V~~~g~~n-----W~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~------------------ 62 (252)
.+...|++||+|||++|+++|.+||..+ |..||+.|||||+.||+.||..+|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 4677899999999999999999998753 99999999999999999999999999986
Q ss_pred -----------CCCCChHHHHHHHHHHHH-h-------------------------------------------------
Q 040502 63 -----------HRTFTPDEDEIIIKAHAR-Y------------------------------------------------- 81 (252)
Q Consensus 63 -----------~~~WT~eED~~Ll~lv~~-~------------------------------------------------- 81 (252)
+..||.+||-.|+..+.+ |
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999998876 2
Q ss_pred ----CC----ChHHHHHHhCCCCHHHHHHHHHHHhhhh
Q 040502 82 ----GN----KWATIARLLNGRTDNAIKNHWNSTLKRK 111 (252)
Q Consensus 82 ----G~----~W~~IA~~lpgRT~~qck~Rw~~~lk~k 111 (252)
|. .|..||+.+|+||.++.|+||...|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 5999999999999999999999888654
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=126.08 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=46.8
Q ss_pred cccccccccCCCcccCCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHH
Q 040502 48 SCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNST 107 (252)
Q Consensus 48 qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~ 107 (252)
+..-||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||++|||+||+.+
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999 99999999999854
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=9.1e-19 Score=122.67 Aligned_cols=58 Identities=31% Similarity=0.684 Sum_probs=54.9
Q ss_pred cccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCccc
Q 040502 5 SVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVE 62 (252)
Q Consensus 5 ~~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~ 62 (252)
+.+..++|+||+|||++|+++|.+||..+|..||..|++||+.||+.||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4678999999999999999999999977899999999999999999999999999875
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.72 E-value=5.3e-19 Score=140.34 Aligned_cols=83 Identities=18% Similarity=0.345 Sum_probs=77.4
Q ss_pred cccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----cccccccccccccccCC-----CcccCC-CCChHHHHHH
Q 040502 5 SVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSI----PGRSGKSCRLRWCNQLS-----PEVEHR-TFTPDEDEII 74 (252)
Q Consensus 5 ~~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~l----pgRs~~qcr~Rw~~~L~-----p~~~~~-~WT~eED~~L 74 (252)
....+++++||+|||+.|+++|++||.++|..|+..+ ++||+.+|++||++++. |.++++ +|+++|+.+|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 3568889999999999999999999998899999974 89999999999999997 999998 9999999999
Q ss_pred HHHHHHhCCChHH
Q 040502 75 IKAHARYGNKWAT 87 (252)
Q Consensus 75 l~lv~~~G~~W~~ 87 (252)
+.++..+|++|+.
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999976
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.72 E-value=1.5e-18 Score=118.18 Aligned_cols=52 Identities=62% Similarity=1.204 Sum_probs=49.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCc
Q 040502 9 RVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPE 60 (252)
Q Consensus 9 ~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~ 60 (252)
.+||+||+|||++|+++|.+||..+|..||..|+|||+.||+.||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 3689999999999999999999878999999999999999999999999984
No 15
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.71 E-value=2.7e-18 Score=136.47 Aligned_cols=79 Identities=19% Similarity=0.378 Sum_probs=73.6
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----cccccccccccccccC-----CCcccCCCCChHH-HHHHH
Q 040502 6 VSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSI----PGRSGKSCRLRWCNQL-----SPEVEHRTFTPDE-DEIII 75 (252)
Q Consensus 6 ~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~l----pgRs~~qcr~Rw~~~L-----~p~~~~~~WT~eE-D~~Ll 75 (252)
...+++++||+|||+.|+++|++||.++|..|++.+ ++||+.+|++||++++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 567889999999999999999999998999999864 8999999999999999 8999999999999 89999
Q ss_pred HHHHHhCCC
Q 040502 76 KAHARYGNK 84 (252)
Q Consensus 76 ~lv~~~G~~ 84 (252)
.++..||+.
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999974
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=118.67 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=56.2
Q ss_pred cCCCcccCCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhhhhhhh
Q 040502 56 QLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAET 115 (252)
Q Consensus 56 ~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~~ 115 (252)
+|+|.+++++||+|||++|++++..||++|..||+ |+|||++||++||+++|++.+...
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 79999999999999999999999999999999999 889999999999999999987765
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.70 E-value=2.7e-18 Score=123.62 Aligned_cols=65 Identities=25% Similarity=0.348 Sum_probs=59.4
Q ss_pred CccccCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc--ccccccccccccccCCCcccCCCCC
Q 040502 3 RDSVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIP--GRSGKSCRLRWCNQLSPEVEHRTFT 67 (252)
Q Consensus 3 ~~~~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lp--gRs~~qcr~Rw~~~L~p~~~~~~WT 67 (252)
.+..+.+.+++||+|||++|+++|++||..+|..||..|+ +||+.||++||.++|+|.+.++..+
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 3456788999999999999999999999878999999999 9999999999999999999887654
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.69 E-value=3.3e-18 Score=116.39 Aligned_cols=51 Identities=41% Similarity=0.836 Sum_probs=48.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCc
Q 040502 10 VKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPE 60 (252)
Q Consensus 10 ~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~ 60 (252)
++|+||+|||++|+++|.+||..+|..||+.|||||+.||+.||.++|+|.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 689999999999999999999878999999999999999999999999984
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.68 E-value=5.9e-17 Score=117.53 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=55.0
Q ss_pred CCCcccCCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhhhhhh
Q 040502 57 LSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAE 114 (252)
Q Consensus 57 L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~ 114 (252)
.+|.+++++||+|||++|+++|..||.+|..||.+|+|||++||++||+.+|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999987654
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=4.5e-17 Score=113.97 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=51.8
Q ss_pred CCcccCCCCChHHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhh
Q 040502 58 SPEVEHRTFTPDEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKY 112 (252)
Q Consensus 58 ~p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~ 112 (252)
+|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5778999999999999999999999 699999999999999999999999998764
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.9e-17 Score=117.79 Aligned_cols=61 Identities=30% Similarity=0.493 Sum_probs=57.3
Q ss_pred CCcccCCCCChHHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhhhhhhh
Q 040502 58 SPEVEHRTFTPDEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRS 118 (252)
Q Consensus 58 ~p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~~~~~ 118 (252)
.|.+++++||++||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.+++..|+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt 65 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCC
Confidence 4678899999999999999999999 799999999999999999999999999998888775
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=1.6e-16 Score=107.99 Aligned_cols=50 Identities=30% Similarity=0.547 Sum_probs=46.3
Q ss_pred ccCCCCChHHHHHHHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 61 VEHRTFTPDEDEIIIKAHARYGN-KWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 61 ~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46789999999999999999997 999999999999999999999999875
No 23
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.65 E-value=1.4e-17 Score=118.43 Aligned_cols=56 Identities=30% Similarity=0.530 Sum_probs=49.1
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc--ccccccccccccccCCCccc
Q 040502 7 SERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIP--GRSGKSCRLRWCNQLSPEVE 62 (252)
Q Consensus 7 ~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lp--gRs~~qcr~Rw~~~L~p~~~ 62 (252)
...+|++||+|||++|+++|++||..+|..||+.++ +||+.||++||.+++.|.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 346789999999999999999999889999999865 99999999999999887664
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=3.1e-17 Score=115.04 Aligned_cols=56 Identities=20% Similarity=0.420 Sum_probs=52.0
Q ss_pred cccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCc
Q 040502 5 SVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPE 60 (252)
Q Consensus 5 ~~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~ 60 (252)
+.+...+++||+|||++|+++|++||..+|..||+.|++||+.||+.||.++|.+.
T Consensus 2 ss~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 2 SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 35678999999999999999999999778999999999999999999999999764
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=2.7e-16 Score=106.92 Aligned_cols=50 Identities=30% Similarity=0.679 Sum_probs=47.0
Q ss_pred ccCCCCChHHHHHHHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 61 VEHRTFTPDEDEIIIKAHARYGN-KWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 61 ~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46889999999999999999996 699999999999999999999999875
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=5.2e-16 Score=111.59 Aligned_cols=60 Identities=20% Similarity=0.396 Sum_probs=54.7
Q ss_pred cCCCcccCCCCChHHHHHHHHHHHHhC-CChHHHHHHhC--CCCHHHHHHHHHHHhhhhhhhh
Q 040502 56 QLSPEVEHRTFTPDEDEIIIKAHARYG-NKWATIARLLN--GRTDNAIKNHWNSTLKRKYAET 115 (252)
Q Consensus 56 ~L~p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~qck~Rw~~~lk~k~~~~ 115 (252)
..++...+++||+|||++|+++|..|| ++|..||..|+ |||+.||++||+++|++.+.+.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 456678899999999999999999999 79999999999 9999999999999999876554
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.62 E-value=6.6e-16 Score=105.48 Aligned_cols=49 Identities=22% Similarity=0.481 Sum_probs=46.3
Q ss_pred cCCCCChHHHHHHHHHHHHhC-CChHHHHHHhC--CCCHHHHHHHHHHHhhh
Q 040502 62 EHRTFTPDEDEIIIKAHARYG-NKWATIARLLN--GRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 62 ~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~qck~Rw~~~lk~ 110 (252)
++++||+|||++|+++|..|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 468999999999999999999 79999999999 99999999999999875
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=8.4e-16 Score=107.67 Aligned_cols=53 Identities=17% Similarity=0.361 Sum_probs=49.5
Q ss_pred CCcccCCCCChHHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 58 SPEVEHRTFTPDEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 58 ~p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
++.+.+++||+|||++|+++|..|| ++|..||+.|+|||+.||++||+++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4568899999999999999999999 7999999999999999999999998864
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=9e-17 Score=109.82 Aligned_cols=49 Identities=31% Similarity=0.466 Sum_probs=46.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccc--ccccccccccccccCC
Q 040502 10 VKGPWSPEEDQLLLKLVQRYGARNWSVISKSIP--GRSGKSCRLRWCNQLS 58 (252)
Q Consensus 10 ~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lp--gRs~~qcr~Rw~~~L~ 58 (252)
+||+||+|||++|+++|.+||..+|..||..|+ +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 489999999999999999999878999999999 9999999999998764
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.60 E-value=1.4e-16 Score=127.23 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=79.7
Q ss_pred CCcccCCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCCCCchHHHHh
Q 040502 58 SPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVDEDSEDSDEREKK 137 (252)
Q Consensus 58 ~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (252)
.+..++++||+|||++|+++|..||.+|..||..|+|||+.||+.||.++|.+.+.+. .|+.+|+..+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~------------~WT~eEd~~L 73 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHT------------PWTAEEDALL 73 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCS------------CCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccc------------cCCHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999998776554 5778899999
Q ss_pred hhhcccCCCccCCCCCCC-CCCCCCcccccCcccc-ccccCCCcccccCCCCc
Q 040502 138 RSAVSVSGISCSPSGSDV-SDSGLPVRVFESECRY-NEVFDVSTDLTLGLPVT 188 (252)
Q Consensus 138 rs~~~~~~~~~s~s~s~~-sds~~~~~~~~~~~~~-~~~~dp~t~Lsls~pg~ 188 (252)
...+...|..|+..+..+ .++...|. .....+ +...-|.+...++.||+
T Consensus 74 ~~~v~~~G~~W~~Ia~~l~gRt~~~~k--~rw~~l~~k~~~p~~~~~~~~~~~ 124 (126)
T 3osg_A 74 VQKIQEYGRQWAIIAKFFPGRTDIHIK--NRWVTISNKLGIPQTQQMLEHHHH 124 (126)
T ss_dssp HHHHHHHCSCHHHHHTTSTTCCHHHHH--HHHHHHHHHTTC------------
T ss_pred HHHHHHHCcCHHHHHHHcCCCCHHHHH--HHHHHHHHhcCCCCCCCCcCcccc
Confidence 888888888887655543 33333222 122111 12344555555555554
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.59 E-value=1.8e-15 Score=107.44 Aligned_cols=52 Identities=25% Similarity=0.523 Sum_probs=47.4
Q ss_pred ccCCCCChHHHHHHHHHHHHhC-CChHHHHHHhC--CCCHHHHHHHHHHHhhhhh
Q 040502 61 VEHRTFTPDEDEIIIKAHARYG-NKWATIARLLN--GRTDNAIKNHWNSTLKRKY 112 (252)
Q Consensus 61 ~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~qck~Rw~~~lk~k~ 112 (252)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||.+++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4678999999999999999999 58999999966 9999999999999998764
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=2.5e-16 Score=109.68 Aligned_cols=51 Identities=24% Similarity=0.545 Sum_probs=47.2
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccC
Q 040502 7 SERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIP-GRSGKSCRLRWCNQL 57 (252)
Q Consensus 7 ~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lp-gRs~~qcr~Rw~~~L 57 (252)
....+++||+|||++|+++|++||..+|..||+.|+ +||+.||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999999889999999999 999999999998865
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-16 Score=116.04 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=56.4
Q ss_pred cccCCCcCCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccccccccccccCCCcccCCCC
Q 040502 5 SVSERVKGPWSPEEDQLLLKLVQRYGA-----RNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTF 66 (252)
Q Consensus 5 ~~~~~~Kg~WT~eED~~L~~~V~~~g~-----~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~W 66 (252)
+.+...+++||+|||++|+++|.+||. .+|..||.+|++||..||+.||.++|.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 468899999999999999999999995 67999999999999999999999999887776643
No 34
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.4e-17 Score=114.47 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=53.5
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCC
Q 040502 6 VSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRT 65 (252)
Q Consensus 6 ~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~ 65 (252)
.|..++++||+|||++|+++|+.||. +|..||+ ++|||+.||+.||.++|+|.++++.
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 57889999999999999999999998 7999999 8999999999999999998776643
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=109.48 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=52.5
Q ss_pred CCcccCCCCChHHHHHHHHHHHHhC------CChHHHHHHhCCCCHHHHHHHHHHHhhhhhhh
Q 040502 58 SPEVEHRTFTPDEDEIIIKAHARYG------NKWATIARLLNGRTDNAIKNHWNSTLKRKYAE 114 (252)
Q Consensus 58 ~p~~~~~~WT~eED~~Ll~lv~~~G------~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~ 114 (252)
+|.+.+++||+|||++|+++|..|| ++|..||.+|+|||+.||++||+++|.+.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 4778899999999999999999999 68999999999999999999999999876544
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56 E-value=7e-15 Score=102.33 Aligned_cols=50 Identities=26% Similarity=0.481 Sum_probs=46.2
Q ss_pred CcccCCCCChHHHHHHHHHHHHhC-CChHHHHHHhC-CCCHHHHHHHHHHHh
Q 040502 59 PEVEHRTFTPDEDEIIIKAHARYG-NKWATIARLLN-GRTDNAIKNHWNSTL 108 (252)
Q Consensus 59 p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~qck~Rw~~~l 108 (252)
..+.+++||++||++|+++|.+|| ++|..||+.|+ |||+.||++||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999998764
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.55 E-value=3.2e-16 Score=113.64 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=54.5
Q ss_pred ccccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccC
Q 040502 4 DSVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEH 63 (252)
Q Consensus 4 ~~~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~ 63 (252)
++.|+..+|+||+|||++|+++|..||. +|..||.+|||||..||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999998 7999999999999999999999998776655
No 38
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.54 E-value=3.8e-15 Score=114.94 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=70.6
Q ss_pred ccCCCCChHHHHHHHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCCCCchHHHHhhh
Q 040502 61 VEHRTFTPDEDEIIIKAHARYGN-KWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVDEDSEDSDEREKKRS 139 (252)
Q Consensus 61 ~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~~~~~~~~~~~~~~~~~~~~~~~~rs 139 (252)
+.+++||+|||++|+++|..||. +|..||..|+|||+.||++||.++|.+.+.+. .|+.+|+..+..
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~------------~Wt~eEd~~L~~ 69 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT------------SWTEEEDRIIYQ 69 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCC------------CCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCccccc------------CCCHHHHHHHHH
Confidence 67899999999999999999996 79999999999999999999999998765443 677888888888
Q ss_pred hcccCCCccCCCCCC
Q 040502 140 AVSVSGISCSPSGSD 154 (252)
Q Consensus 140 ~~~~~~~~~s~s~s~ 154 (252)
.+...|..|+..+..
T Consensus 70 ~~~~~G~~W~~Ia~~ 84 (105)
T 1gv2_A 70 AHKRLGNRWAEIAKL 84 (105)
T ss_dssp HHHHHSSCHHHHHTT
T ss_pred HHHHhCCCHHHHHHH
Confidence 888888777665543
No 39
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.52 E-value=1.2e-14 Score=112.77 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=67.5
Q ss_pred CCCCChHHHHHHHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCCCCchHHHHhhhhc
Q 040502 63 HRTFTPDEDEIIIKAHARYGN-KWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVDEDSEDSDEREKKRSAV 141 (252)
Q Consensus 63 ~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~ 141 (252)
+++||+|||++|+++|..||. +|..||..|+|||+.||+.||.++|.+.+... .|+.+|+..+...+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~------------~WT~eEd~~L~~~~ 68 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTD------------PWSPEEDMLLDQKY 68 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTC------------CCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccccccc------------ccCHHHHHHHHHHH
Confidence 578999999999999999995 89999999999999999999999998866544 57788888888888
Q ss_pred ccCCCccCCCC
Q 040502 142 SVSGISCSPSG 152 (252)
Q Consensus 142 ~~~~~~~s~s~ 152 (252)
...|..|+..+
T Consensus 69 ~~~G~~W~~Ia 79 (107)
T 2k9n_A 69 AEYGPKWNKIS 79 (107)
T ss_dssp HHTCSCHHHHH
T ss_pred HHhCcCHHHHH
Confidence 87877765543
No 40
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.27 E-value=1e-15 Score=115.49 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=52.9
Q ss_pred cCCCcccCCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhhh
Q 040502 56 QLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111 (252)
Q Consensus 56 ~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~k 111 (252)
.++|.+++++||+|||++|+++|..||++|..||..|+|||++||++||+++|++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56788999999999999999999999999999999999999999999999998864
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.48 E-value=1.4e-14 Score=112.37 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=67.2
Q ss_pred cccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----cccccccccccccccC-----CCcccCCCCChHHHHH-H
Q 040502 5 SVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSI----PGRSGKSCRLRWCNQL-----SPEVEHRTFTPDEDEI-I 74 (252)
Q Consensus 5 ~~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~l----pgRs~~qcr~Rw~~~L-----~p~~~~~~WT~eED~~-L 74 (252)
....+++++||+|||+.|+.+|++||..+|..|++.+ ++||..+|++||++++ +|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 3567889999999999999999999998899999965 8999999999999988 7889998888887655 7
Q ss_pred HHHHHHhC
Q 040502 75 IKAHARYG 82 (252)
Q Consensus 75 l~lv~~~G 82 (252)
+++++.+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.48 E-value=1.2e-14 Score=116.68 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=71.4
Q ss_pred CCCCChHHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCCCCchHHHHhhhhc
Q 040502 63 HRTFTPDEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVDEDSEDSDEREKKRSAV 141 (252)
Q Consensus 63 ~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~ 141 (252)
+|+||+|||++|+++|..|| ++|..||..|||||+.||+.||.++|.+.+.+. .|+.+|+..+...+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~------------~Wt~eEd~~L~~~~ 69 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKH------------AWTPEEDETIFRNY 69 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCS------------CCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCC------------CCCHHHHHHHHHHH
Confidence 68999999999999999999 789999999999999999999999998866554 57788999999998
Q ss_pred ccCCCccCCCCCCC
Q 040502 142 SVSGISCSPSGSDV 155 (252)
Q Consensus 142 ~~~~~~~s~s~s~~ 155 (252)
...|..|+..+..+
T Consensus 70 ~~~G~~W~~Ia~~l 83 (131)
T 3zqc_A 70 LKLGSKWSVIAKLI 83 (131)
T ss_dssp HHSCSCHHHHTTTS
T ss_pred HHHCcCHHHHHHHc
Confidence 88888887766554
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.47 E-value=1.6e-14 Score=107.62 Aligned_cols=69 Identities=20% Similarity=0.367 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----ccccccccccccccccC-----CCcccC-CCCChHHHHHHHHHHHH
Q 040502 12 GPWSPEEDQLLLKLVQRYGARNWSVISKS----IPGRSGKSCRLRWCNQL-----SPEVEH-RTFTPDEDEIIIKAHAR 80 (252)
Q Consensus 12 g~WT~eED~~L~~~V~~~g~~nW~~Ia~~----lpgRs~~qcr~Rw~~~L-----~p~~~~-~~WT~eED~~Ll~lv~~ 80 (252)
++||+|||+.|+++|++||.++|..|++. |++||+.+|++||++++ +|.+++ .+..++....++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999899999985 89999999999999987 676655 46777777889888764
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-14 Score=105.86 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=47.4
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCccc
Q 040502 6 VSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVE 62 (252)
Q Consensus 6 ~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~ 62 (252)
+|+.+||+||+|||++|+++|.+||.+ |+.||+.| |||+.||+.||.. |....+
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 678999999999999999999999985 99999999 9999999999974 544433
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.42 E-value=1.3e-13 Score=100.29 Aligned_cols=51 Identities=14% Similarity=0.337 Sum_probs=47.1
Q ss_pred CcccCCCCChHHHHHHHHHHHHhC----CChHHHHHHhCCCCHHHHHHHHHHHhh
Q 040502 59 PEVEHRTFTPDEDEIIIKAHARYG----NKWATIARLLNGRTDNAIKNHWNSTLK 109 (252)
Q Consensus 59 p~~~~~~WT~eED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~lk 109 (252)
+...+++||.+||.+|++++..|| ++|..||.+|||||..||++||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 689999999999999999999998865
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.40 E-value=2.4e-13 Score=100.39 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=45.0
Q ss_pred cccCCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHH
Q 040502 60 EVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNST 107 (252)
Q Consensus 60 ~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~ 107 (252)
...+++||++||++|+++|..||++|..||++|++||+.||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999865
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.39 E-value=6.2e-14 Score=103.50 Aligned_cols=50 Identities=22% Similarity=0.529 Sum_probs=46.1
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 040502 6 VSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQ 56 (252)
Q Consensus 6 ~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~ 56 (252)
.....+++||+|||.+|+++|++|| .+|..||++|++||..||+.||.++
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3445679999999999999999999 6899999999999999999999987
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.09 E-value=3.2e-14 Score=107.27 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=50.1
Q ss_pred cccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCC
Q 040502 5 SVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSP 59 (252)
Q Consensus 5 ~~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p 59 (252)
..+...+|+||+|||++|+++|..||. +|..||..|+|||..||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 467888999999999999999999998 699999999999999999999988763
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.35 E-value=7.2e-14 Score=101.67 Aligned_cols=54 Identities=24% Similarity=0.569 Sum_probs=47.6
Q ss_pred cccCCCcCCCCHHHHHHHHHHHHHhC---CCCcccccccccccccccccccccccCC
Q 040502 5 SVSERVKGPWSPEEDQLLLKLVQRYG---ARNWSVISKSIPGRSGKSCRLRWCNQLS 58 (252)
Q Consensus 5 ~~~~~~Kg~WT~eED~~L~~~V~~~g---~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~ 58 (252)
..+...+++||++||.+|+.++..|| ..+|..||.+|||||..||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34566789999999999999999999 3469999999999999999999987653
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=1.3e-12 Score=97.33 Aligned_cols=48 Identities=23% Similarity=0.503 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHHHHhCC-ChHHHHHH----hCCCCHHHHHHHHHHHhhhh
Q 040502 64 RTFTPDEDEIIIKAHARYGN-KWATIARL----LNGRTDNAIKNHWNSTLKRK 111 (252)
Q Consensus 64 ~~WT~eED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~qck~Rw~~~lk~k 111 (252)
++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999996 89999999999999999754
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.29 E-value=3.4e-12 Score=101.19 Aligned_cols=55 Identities=24% Similarity=0.466 Sum_probs=50.3
Q ss_pred cCCCcccCCCCChHHHHHHHHHHHHhCC-ChHHHHHHh----CCCCHHHHHHHHHHHhhh
Q 040502 56 QLSPEVEHRTFTPDEDEIIIKAHARYGN-KWATIARLL----NGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 56 ~L~p~~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~l----pgRT~~qck~Rw~~~lk~ 110 (252)
-+.+...+++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+|++||+++++.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3566788999999999999999999996 999999985 899999999999999984
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.28 E-value=1.6e-12 Score=113.45 Aligned_cols=55 Identities=22% Similarity=0.474 Sum_probs=48.8
Q ss_pred CcccCCCCChHHHHHHHHHHHHhCCC------hHHHHHHhCCCCHHHHHHHHHHHhhhhhh
Q 040502 59 PEVEHRTFTPDEDEIIIKAHARYGNK------WATIARLLNGRTDNAIKNHWNSTLKRKYA 113 (252)
Q Consensus 59 p~~~~~~WT~eED~~Ll~lv~~~G~~------W~~IA~~lpgRT~~qck~Rw~~~lk~k~~ 113 (252)
+.+++++||+|||+.|+++|.+||++ |..||++|||||++|||+||+++|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35678899999999999999999875 99999999999999999999999999876
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.28 E-value=4.4e-12 Score=98.27 Aligned_cols=54 Identities=20% Similarity=0.442 Sum_probs=48.2
Q ss_pred CCcccCCCCChHHHHHHHHHHHHhCC-ChHHHHHHh----CCCCHHHHHHHHHHHhhhh
Q 040502 58 SPEVEHRTFTPDEDEIIIKAHARYGN-KWATIARLL----NGRTDNAIKNHWNSTLKRK 111 (252)
Q Consensus 58 ~p~~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~l----pgRT~~qck~Rw~~~lk~k 111 (252)
.+..++++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+|++||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999996 999999965 8999999999999999753
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=5.1e-12 Score=88.55 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=45.9
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCChHHHHH---HhCCCCHHHHHHHHHHHhhh
Q 040502 61 VEHRTFTPDEDEIIIKAHARYGNKWATIAR---LLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 61 ~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~---~lpgRT~~qck~Rw~~~lk~ 110 (252)
.++.+||+|||+.|+++|.+||.+|..|+. .+++||.-++++||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 467899999999999999999999999994 67899999999999998875
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.24 E-value=1.5e-11 Score=97.68 Aligned_cols=54 Identities=22% Similarity=0.439 Sum_probs=48.3
Q ss_pred CCcccCCCCChHHHHHHHHHHHHhCC-ChHHHHHHh----CCCCHHHHHHHHHHHhhhh
Q 040502 58 SPEVEHRTFTPDEDEIIIKAHARYGN-KWATIARLL----NGRTDNAIKNHWNSTLKRK 111 (252)
Q Consensus 58 ~p~~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~l----pgRT~~qck~Rw~~~lk~k 111 (252)
.....+++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+|++||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567889999999999999999995 999999974 8999999999999999753
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.24 E-value=1.1e-11 Score=94.18 Aligned_cols=50 Identities=28% Similarity=0.593 Sum_probs=45.2
Q ss_pred cCCCCChHHHHHHHHHHHHhC----CChHHHHHHhCCCCHHHHHHHHHHHhhhh
Q 040502 62 EHRTFTPDEDEIIIKAHARYG----NKWATIARLLNGRTDNAIKNHWNSTLKRK 111 (252)
Q Consensus 62 ~~~~WT~eED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~lk~k 111 (252)
..++||.+||.+|++++..|| ++|..||..|||||.++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999996 67999999999999999999999987653
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.08 E-value=9.1e-12 Score=94.55 Aligned_cols=49 Identities=16% Similarity=0.491 Sum_probs=43.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhC---CCCcccccccccccccccccccccccC
Q 040502 9 RVKGPWSPEEDQLLLKLVQRYG---ARNWSVISKSIPGRSGKSCRLRWCNQL 57 (252)
Q Consensus 9 ~~Kg~WT~eED~~L~~~V~~~g---~~nW~~Ia~~lpgRs~~qcr~Rw~~~L 57 (252)
-.+++||+|||++|.+++..|| ...|..||..|||||..+|+.||.+++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3478999999999999999997 345999999999999999999998754
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.9e-10 Score=79.60 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=43.8
Q ss_pred cCCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhh
Q 040502 62 EHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLK 109 (252)
Q Consensus 62 ~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk 109 (252)
..++||++|+.++++++..||.+|..||..||+||..+|..+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999999999999999999999999976543
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.02 E-value=7.5e-11 Score=82.62 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=45.9
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHhCCCCccccc---ccccccccccccccccccCC
Q 040502 7 SERVKGPWSPEEDQLLLKLVQRYGARNWSVIS---KSIPGRSGKSCRLRWCNQLS 58 (252)
Q Consensus 7 ~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia---~~lpgRs~~qcr~Rw~~~L~ 58 (252)
.-+.+.+||+|||+.|+++|++||. +|..|+ .++++||...+++||+++..
T Consensus 4 ~~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 4 GSSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 4568999999999999999999998 899999 57889999999999987653
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.89 E-value=3e-09 Score=76.94 Aligned_cols=50 Identities=14% Similarity=0.316 Sum_probs=44.5
Q ss_pred cccCCCCChHHHHHHHHHHHHhC----CChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 60 EVEHRTFTPDEDEIIIKAHARYG----NKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 60 ~~~~~~WT~eED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
....+.||.|||.+|.++++.|+ ++|..||..| |||..+|++||+.+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34567899999999999999997 5699999998 99999999999987654
No 61
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.89 E-value=2.2e-09 Score=81.15 Aligned_cols=65 Identities=11% Similarity=0.150 Sum_probs=57.8
Q ss_pred ccccccccccCCCcccCCCCChHHHHHHHHHHHHhCCChHHHHHHh-----CCCCHHHHHHHHHHHhhhhhhhh
Q 040502 47 KSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLL-----NGRTDNAIKNHWNSTLKRKYAET 115 (252)
Q Consensus 47 ~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~l-----pgRT~~qck~Rw~~~lk~k~~~~ 115 (252)
.=+.++|.++|.+ .+||.||+..|++|+.+||.+|..|+..+ ++||..++|+||..+.++.+...
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4578899999876 89999999999999999999999999999 58999999999999888765544
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=5e-10 Score=78.39 Aligned_cols=49 Identities=14% Similarity=0.311 Sum_probs=43.6
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 040502 7 SERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQ 56 (252)
Q Consensus 7 ~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~ 56 (252)
.....++||+||++++.+++.+||. +|..||..||+||..||..+|...
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3445689999999999999999995 799999999999999999998643
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.83 E-value=5.9e-09 Score=90.25 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=45.7
Q ss_pred cCCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 62 EHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 62 ~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
...+||++|+.++++++..||++|..||+.|++||..||+++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999977764
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.67 E-value=2e-08 Score=95.83 Aligned_cols=46 Identities=17% Similarity=0.421 Sum_probs=42.5
Q ss_pred CCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhh
Q 040502 64 RTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLK 109 (252)
Q Consensus 64 ~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk 109 (252)
..||.+|-.++++++.+||.+|..||+.+++||..||+++|..+.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999975443
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.67 E-value=2.9e-09 Score=77.05 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=44.0
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccC
Q 040502 6 VSERVKGPWSPEEDQLLLKLVQRYGA---RNWSVISKSIPGRSGKSCRLRWCNQL 57 (252)
Q Consensus 6 ~~~~~Kg~WT~eED~~L~~~V~~~g~---~nW~~Ia~~lpgRs~~qcr~Rw~~~L 57 (252)
.+....+.||.|||++|.+++.+|+. ..|..||.++ |||..+|+.||..+.
T Consensus 3 ~~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 3 SGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 44556789999999999999999973 4599999998 999999999997654
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.61 E-value=6.2e-08 Score=70.09 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=42.8
Q ss_pred CCCCChHHHHHHHHHHHHhCC----ChHHHHHHhCCCCHHHHHHHHHHHhh
Q 040502 63 HRTFTPDEDEIIIKAHARYGN----KWATIARLLNGRTDNAIKNHWNSTLK 109 (252)
Q Consensus 63 ~~~WT~eED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~qck~Rw~~~lk 109 (252)
...||.+|+.+|.+++..|+. +|..||..++|||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 467999999999999999984 59999999999999999999997754
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.60 E-value=6.7e-09 Score=72.30 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=43.5
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccccccccccccCC
Q 040502 11 KGPWSPEEDQLLLKLVQRY--------GARNWSVISK-SIPGRSGKSCRLRWCNQLS 58 (252)
Q Consensus 11 Kg~WT~eED~~L~~~V~~~--------g~~nW~~Ia~-~lpgRs~~qcr~Rw~~~L~ 58 (252)
|.+||+|||.+|++.|.+| |..-|..+++ .+|++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5789999999999999999 5445999999 8999999999999998875
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.51 E-value=1e-07 Score=66.30 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=42.1
Q ss_pred CCCCChHHHHHHHHHHHHh--------CCC-hHHHHH-HhCCCCHHHHHHHHHHHhh
Q 040502 63 HRTFTPDEDEIIIKAHARY--------GNK-WATIAR-LLNGRTDNAIKNHWNSTLK 109 (252)
Q Consensus 63 ~~~WT~eED~~Ll~lv~~~--------G~~-W~~IA~-~lpgRT~~qck~Rw~~~lk 109 (252)
+.+||+|||+.|++.|.+| |++ |..+++ .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4589999999999999999 444 999999 8999999999999988764
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.48 E-value=3.2e-08 Score=85.64 Aligned_cols=51 Identities=22% Similarity=0.431 Sum_probs=46.2
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCC
Q 040502 7 SERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLS 58 (252)
Q Consensus 7 ~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~ 58 (252)
..+..++||+||+.++++++.+||. +|..||+.|++||..||+.+|.++..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3466789999999999999999995 79999999999999999999987664
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=5.5e-08 Score=70.39 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccCCC
Q 040502 12 GPWSPEEDQLLLKLVQRYGA---RNWSVISKSIPGRSGKSCRLRWCNQLSP 59 (252)
Q Consensus 12 g~WT~eED~~L~~~V~~~g~---~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p 59 (252)
..||.+|+.+|.+++..|+. .+|..||..|||||..+|+.||..++..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999974 3599999999999999999999877643
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=5.1e-06 Score=58.21 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=43.8
Q ss_pred CcccCCCCChHHHHHHHHHHHHhCCChHHHHH-HhCCCCHHHHHHHHHH
Q 040502 59 PEVEHRTFTPDEDEIIIKAHARYGNKWATIAR-LLNGRTDNAIKNHWNS 106 (252)
Q Consensus 59 p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~qck~Rw~~ 106 (252)
|.+....||++|-.+..+++..||.+|..|++ .|++||..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 56677899999999999999999999999999 5999999999998863
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.12 E-value=1.5e-05 Score=59.54 Aligned_cols=46 Identities=15% Similarity=0.373 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHhCC---ChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 65 TFTPDEDEIIIKAHARYGN---KWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 65 ~WT~eED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
.||.+||..||...++-|. .|+.||+.|.+|+.+|+++||+.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 5999999999999999986 699999999999999999999988864
No 73
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.07 E-value=1.3e-05 Score=72.57 Aligned_cols=99 Identities=15% Similarity=0.307 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc-------cccc-----------------------------
Q 040502 12 GPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRL-------RWCN----------------------------- 55 (252)
Q Consensus 12 g~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~-------Rw~~----------------------------- 55 (252)
+.||..+...++.++.+||..+|..||..|+|+|...++. ||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999989999999999888755432 1100
Q ss_pred --------------cCCCcccCCCCChHHHHHHHHHHHHhCC----ChHHHHH------------HhCCCCHHHHHHHHH
Q 040502 56 --------------QLSPEVEHRTFTPDEDEIIIKAHARYGN----KWATIAR------------LLNGRTDNAIKNHWN 105 (252)
Q Consensus 56 --------------~L~p~~~~~~WT~eED~~Ll~lv~~~G~----~W~~IA~------------~lpgRT~~qck~Rw~ 105 (252)
+..+..+...||.+||..||-++.+||- .|..|.. ++..||+.+|..|.+
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 0001223468999999999999999995 5999973 456899999999999
Q ss_pred HHhhh
Q 040502 106 STLKR 110 (252)
Q Consensus 106 ~~lk~ 110 (252)
++++-
T Consensus 271 tLi~~ 275 (304)
T 1ofc_X 271 TLITL 275 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.06 E-value=7.3e-07 Score=64.23 Aligned_cols=44 Identities=14% Similarity=0.346 Sum_probs=38.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---Cccccccccccccccccccccc
Q 040502 11 KGPWSPEEDQLLLKLVQRYGAR---NWSVISKSIPGRSGKSCRLRWC 54 (252)
Q Consensus 11 Kg~WT~eED~~L~~~V~~~g~~---nW~~Ia~~lpgRs~~qcr~Rw~ 54 (252)
-+.||.+|+++|.+++..|+.. .|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999642 4999999999999999999995
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.00 E-value=9.4e-07 Score=63.66 Aligned_cols=43 Identities=23% Similarity=0.453 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHHHHhCC----ChHHHHHHhCCCCHHHHHHHHH
Q 040502 63 HRTFTPDEDEIIIKAHARYGN----KWATIARLLNGRTDNAIKNHWN 105 (252)
Q Consensus 63 ~~~WT~eED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~qck~Rw~ 105 (252)
...||.+|+.+|..+++.|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999984 6999999999999999999884
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.21 E-value=9.8e-07 Score=62.47 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHHhCC---ChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 65 TFTPDEDEIIIKAHARYGN---KWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 65 ~WT~eED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
.||.|||..||..+++-|. .|+.||..| +||++|+.+||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999996 699999999 99999999999988753
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=4.9e-06 Score=58.33 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=44.8
Q ss_pred ccccCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccc
Q 040502 4 DSVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISK-SIPGRSGKSCRLRWC 54 (252)
Q Consensus 4 ~~~~~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~-~lpgRs~~qcr~Rw~ 54 (252)
++.|......||+||-++..+++.+||. +|..|++ .|++|+..+|...|.
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHh
Confidence 4567788899999999999999999996 7999998 699999999988774
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.78 E-value=6.3e-05 Score=56.57 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=46.9
Q ss_pred CCCChHHHHHHHHHHHHhCCChHHHHHHhC-----CCCHHHHHHHHHHHhhhhhhhh
Q 040502 64 RTFTPDEDEIIIKAHARYGNKWATIARLLN-----GRTDNAIKNHWNSTLKRKYAET 115 (252)
Q Consensus 64 ~~WT~eED~~Ll~lv~~~G~~W~~IA~~lp-----gRT~~qck~Rw~~~lk~k~~~~ 115 (252)
..||.||...|++++.+|+-+|.-|+..+. .||-.++|.||..+.++.+...
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 679999999999999999999999999874 7999999999999888766544
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.77 E-value=3.7e-05 Score=58.04 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=41.2
Q ss_pred CCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 040502 63 HRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNS 106 (252)
Q Consensus 63 ~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~ 106 (252)
...||++|.+++.+++..||.+|..||..|++||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 35799999999999999999999999999999999999998864
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.73 E-value=6.5e-05 Score=53.66 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=40.3
Q ss_pred CCCCChHHHHHHHHHHHHhCCChHHHHH-HhCCCCHHHHHHHHH
Q 040502 63 HRTFTPDEDEIIIKAHARYGNKWATIAR-LLNGRTDNAIKNHWN 105 (252)
Q Consensus 63 ~~~WT~eED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~qck~Rw~ 105 (252)
...||++|-.+..+++..||.+|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 3479999999999999999999999999 699999999999987
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.59 E-value=1.5e-05 Score=75.99 Aligned_cols=48 Identities=23% Similarity=0.487 Sum_probs=43.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 040502 8 ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQ 56 (252)
Q Consensus 8 ~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~ 56 (252)
.+...+||.+|-.++++++.+||. +|..||..|++||..||+.+|.++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356789999999999999999995 899999999999999999998754
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.56 E-value=1.7e-05 Score=59.84 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccc-----cccccccccccccccC
Q 040502 12 GPWSPEEDQLLLKLVQRYGARNWSVISKSI-----PGRSGKSCRLRWCNQL 57 (252)
Q Consensus 12 g~WT~eED~~L~~~V~~~g~~nW~~Ia~~l-----pgRs~~qcr~Rw~~~L 57 (252)
++||.||++.|++++++|+.+ |..|+..+ ++||..+++.||..+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999986 99999988 5899999999997643
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.40 E-value=4.2e-05 Score=57.72 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccc
Q 040502 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWC 54 (252)
Q Consensus 11 Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~ 54 (252)
...||+||.++..++...||. +|..||..||+||..+|-..|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCCCCHHHHHHHHh
Confidence 368999999999999999996 7999999999999999988774
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.40 E-value=7.1e-05 Score=53.44 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=41.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccc
Q 040502 8 ERVKGPWSPEEDQLLLKLVQRYGARNWSVISK-SIPGRSGKSCRLRWC 54 (252)
Q Consensus 8 ~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~-~lpgRs~~qcr~Rw~ 54 (252)
......||++|-.+..+++.+||. +|..|++ .||+||..+|...|.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence 345678999999999999999996 7999999 699999999988775
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.38 E-value=0.00016 Score=53.14 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=39.9
Q ss_pred CCCCChHHHHHHHHHHHHhCC----------ChHHHHHHhC----CCCHHHHHHHHHHHhhh
Q 040502 63 HRTFTPDEDEIIIKAHARYGN----------KWATIARLLN----GRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 63 ~~~WT~eED~~Ll~lv~~~G~----------~W~~IA~~lp----gRT~~qck~Rw~~~lk~ 110 (252)
...||.+|...||+++..+.. .|..||..|. .||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999975321 4999999874 69999999999987765
No 86
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.37 E-value=4e-05 Score=54.23 Aligned_cols=45 Identities=13% Similarity=0.429 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccCC
Q 040502 13 PWSPEEDQLLLKLVQRYGA--RNWSVISKSIPGRSGKSCRLRWCNQLS 58 (252)
Q Consensus 13 ~WT~eED~~L~~~V~~~g~--~nW~~Ia~~lpgRs~~qcr~Rw~~~L~ 58 (252)
.||.|||..|+...++.|. ..|..||..| +|+..|+..||...+.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999986 2499999999 9999999999987654
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.10 E-value=0.00075 Score=62.46 Aligned_cols=99 Identities=20% Similarity=0.374 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccc-------ccccc---------------------------
Q 040502 12 GPWSPEEDQLLLKLVQRYGARNWSVISKSIP-GRSGKSCRL-------RWCNQ--------------------------- 56 (252)
Q Consensus 12 g~WT~eED~~L~~~V~~~g~~nW~~Ia~~lp-gRs~~qcr~-------Rw~~~--------------------------- 56 (252)
+.||.-+=..++.+..+||-.+-..||..|. ++|...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999888999999996 777644331 11110
Q ss_pred -------------C----CCc-ccCCCCChHHHHHHHHHHHHhCC----ChHHHHHH------------hCCCCHHHHHH
Q 040502 57 -------------L----SPE-VEHRTFTPDEDEIIIKAHARYGN----KWATIARL------------LNGRTDNAIKN 102 (252)
Q Consensus 57 -------------L----~p~-~~~~~WT~eED~~Ll~lv~~~G~----~W~~IA~~------------lpgRT~~qck~ 102 (252)
| .+. .+...||.+||..||-++.+||- .|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 011 13457999999999999999994 59999543 45799999999
Q ss_pred HHHHHhhh
Q 040502 103 HWNSTLKR 110 (252)
Q Consensus 103 Rw~~~lk~ 110 (252)
|.+.+++-
T Consensus 284 Rc~tLi~~ 291 (374)
T 2y9y_A 284 RGNTLLQC 291 (374)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.94 E-value=0.00076 Score=57.17 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=68.9
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHhC--CCCccccccc--ccccccccccc-------ccc---------------------
Q 040502 7 SERVKGPWSPEEDQLLLKLVQRYG--ARNWSVISKS--IPGRSGKSCRL-------RWC--------------------- 54 (252)
Q Consensus 7 ~~~~Kg~WT~eED~~L~~~V~~~g--~~nW~~Ia~~--lpgRs~~qcr~-------Rw~--------------------- 54 (252)
|+-....||..|=..|++++.+|| ...|..|+.. |.+++...+.. ++.
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~ 82 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK 82 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 455667899999999999999999 4569999753 56665533211 000
Q ss_pred --------------------------------------cc-CC----CcccCCCCChHHHHHHHHHHHHhC-CChHHHHH
Q 040502 55 --------------------------------------NQ-LS----PEVEHRTFTPDEDEIIIKAHARYG-NKWATIAR 90 (252)
Q Consensus 55 --------------------------------------~~-L~----p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~ 90 (252)
+. +. +..-...||.+||..||..+.+|| ++|..|-.
T Consensus 83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 00 00 001123599999999999999999 89999976
Q ss_pred --Hh------------CCCCHHHHHHHHHHHhhh
Q 040502 91 --LL------------NGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 91 --~l------------pgRT~~qck~Rw~~~lk~ 110 (252)
.| ..++...+..|-..+|+-
T Consensus 163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred ChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 21 124566799998877763
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.70 E-value=0.00021 Score=53.26 Aligned_cols=45 Identities=27% Similarity=0.483 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccccc
Q 040502 12 GPWSPEEDQLLLKLVQRYGA--RNWSVISKSIPGRSGKSCRLRWCNQ 56 (252)
Q Consensus 12 g~WT~eED~~L~~~V~~~g~--~nW~~Ia~~lpgRs~~qcr~Rw~~~ 56 (252)
-.||.|||..|+...++.|. ..|..||+.|.+|+..|+.+||+.+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 36999999999999999985 3599999999999999999999753
No 90
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.62 E-value=0.00016 Score=53.21 Aligned_cols=49 Identities=24% Similarity=0.505 Sum_probs=39.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhC------CC---Cccccccccc----ccccccccccccccC
Q 040502 9 RVKGPWSPEEDQLLLKLVQRYG------AR---NWSVISKSIP----GRSGKSCRLRWCNQL 57 (252)
Q Consensus 9 ~~Kg~WT~eED~~L~~~V~~~g------~~---nW~~Ia~~lp----gRs~~qcr~Rw~~~L 57 (252)
.....||.+|-.+|+.+...+. .. -|..||..|. .||+.||+.+|.++.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4567899999999999997642 11 3999999873 799999999998643
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.54 E-value=0.01 Score=44.50 Aligned_cols=44 Identities=25% Similarity=0.466 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccc-----cccccccccccccc
Q 040502 12 GPWSPEEDQLLLKLVQRYGARNWSVISKSIP-----GRSGKSCRLRWCNQ 56 (252)
Q Consensus 12 g~WT~eED~~L~~~V~~~g~~nW~~Ia~~lp-----gRs~~qcr~Rw~~~ 56 (252)
..||.||.+.|..++++|.-+ |..|+.... .||..+.+.||..+
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 689999999999999999986 999998763 68888888888654
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.49 E-value=0.16 Score=35.38 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=39.5
Q ss_pred cCCCCChHHHHHHHHHHHHhCCC---hHHHHHHh--CCCCHHHHHHHHHHH
Q 040502 62 EHRTFTPDEDEIIIKAHARYGNK---WATIARLL--NGRTDNAIKNHWNST 107 (252)
Q Consensus 62 ~~~~WT~eED~~Ll~lv~~~G~~---W~~IA~~l--pgRT~~qck~Rw~~~ 107 (252)
.+-.||+|.-+..+++|..+|.. +..|-+.| +|.|..+|+.|.+.+
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34579999999999999999954 78999987 589999999998754
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.58 E-value=0.087 Score=47.46 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=41.9
Q ss_pred CCCCChHHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 63 HRTFTPDEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 63 ~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
.+.||..|...++.++..|| +.|..||..|+|+|...|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 34699999999999999999 5799999999999999997776665554
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.56 E-value=0.039 Score=38.50 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=38.5
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCCCC--cccccccc--cccccccccccccc
Q 040502 6 VSERVKGPWSPEEDQLLLKLVQRYGARN--WSVISKSI--PGRSGKSCRLRWCN 55 (252)
Q Consensus 6 ~~~~~Kg~WT~eED~~L~~~V~~~g~~n--W~~Ia~~l--pgRs~~qcr~Rw~~ 55 (252)
..++.+-.||+|..+..+.+|+..|... +..|.+.| +|.|..++..|.+.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3567788999999999999999999432 67887765 57777777766543
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.98 E-value=0.46 Score=41.99 Aligned_cols=27 Identities=30% Similarity=0.661 Sum_probs=25.0
Q ss_pred CCCChHHHHHHHHHHHHhC-CChHHHHH
Q 040502 64 RTFTPDEDEIIIKAHARYG-NKWATIAR 90 (252)
Q Consensus 64 ~~WT~eED~~Ll~lv~~~G-~~W~~IA~ 90 (252)
..|+.+||..||..|.+|| ++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999 89999975
No 96
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.70 E-value=0.24 Score=41.51 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=40.3
Q ss_pred cCCCCChHHHHHHHHHHHHhC---CChHHHHHH--hCCCCHHHHHHHHHHHhhh
Q 040502 62 EHRTFTPDEDEIIIKAHARYG---NKWATIARL--LNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 62 ~~~~WT~eED~~Ll~lv~~~G---~~W~~IA~~--lpgRT~~qck~Rw~~~lk~ 110 (252)
....||..|-..|++++.+|| .+|..|+.. |.++|...++..+..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 446799999999999999999 579999875 7899999999876655543
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.08 E-value=0.11 Score=45.97 Aligned_cols=28 Identities=39% Similarity=0.735 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 040502 12 GPWSPEEDQLLLKLVQRYGARNWSVISK 39 (252)
Q Consensus 12 g~WT~eED~~L~~~V~~~g~~nW~~Ia~ 39 (252)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999999999953
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=74.56 E-value=7.8 Score=25.45 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 66 FTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 66 WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
++ +.+..++.++...|-.+.+||..| |-+...|+.+....+++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44 444555666657788999999999 88999999887765543
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=72.30 E-value=9.4 Score=25.77 Aligned_cols=41 Identities=15% Similarity=0.332 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHH----hCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 69 DEDEIIIKAHAR----YGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 69 eED~~Ll~lv~~----~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
+.+..++.+..- .|..|.+||..| |-|...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344445555544 567899999999 99999999988766654
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=71.87 E-value=4.4 Score=30.86 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=30.8
Q ss_pred HHHHHHHHhCC--------ChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 73 IIIKAHARYGN--------KWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 73 ~Ll~lv~~~G~--------~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
.|..+|..+|+ .|..||..|.--....++.+|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 38888888885 699999998544478899999988765
No 101
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=70.38 E-value=3.6 Score=33.65 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=20.9
Q ss_pred ccCCCcCCCCHHHHHHH--------HHHHHHhC
Q 040502 6 VSERVKGPWSPEEDQLL--------LKLVQRYG 30 (252)
Q Consensus 6 ~~~~~Kg~WT~eED~~L--------~~~V~~~g 30 (252)
-|....|-||+++|+.| .+++++||
T Consensus 109 iP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp SCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 46789999999999988 46777887
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=68.18 E-value=11 Score=28.05 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC--------ChHHHHHHhCCCC----HHHHHHHHHHHhhh
Q 040502 73 IIIKAHARYGN--------KWATIARLLNGRT----DNAIKNHWNSTLKR 110 (252)
Q Consensus 73 ~Ll~lv~~~G~--------~W~~IA~~lpgRT----~~qck~Rw~~~lk~ 110 (252)
.|..+|.++|+ .|..|+..|.--. ...++.+|..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47777888885 6999999994322 46788889887754
No 103
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=68.14 E-value=16 Score=24.15 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=30.0
Q ss_pred HHHHHHHHHH----HhCCChHHHHHHhCCCCHHHHHHHHHHHhhhh
Q 040502 70 EDEIIIKAHA----RYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111 (252)
Q Consensus 70 ED~~Ll~lv~----~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~k 111 (252)
.+..++.+.. ..|-.+.+||..| |-|...|+.+....+++-
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444555543 2467899999999 999999999888766543
No 104
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=67.24 E-value=9.7 Score=28.96 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC--------ChHHHHHHhCCCC----HHHHHHHHHHHhhh
Q 040502 73 IIIKAHARYGN--------KWATIARLLNGRT----DNAIKNHWNSTLKR 110 (252)
Q Consensus 73 ~Ll~lv~~~G~--------~W~~IA~~lpgRT----~~qck~Rw~~~lk~ 110 (252)
.|..+|..+|+ .|..|+..|.--. ...++.+|..+|-+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47888888885 6999999984322 56789999888765
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=65.48 E-value=7 Score=30.20 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=30.1
Q ss_pred HHHHHHHhCC--------ChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 74 IIKAHARYGN--------KWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 74 Ll~lv~~~G~--------~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
|..+|.+.|+ .|..|+..|.--....++..|..+|-+
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 7777877775 499999998544588999999988865
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=62.72 E-value=13 Score=28.45 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC--------ChHHHHHHhCCCC----HHHHHHHHHHHhhh
Q 040502 73 IIIKAHARYGN--------KWATIARLLNGRT----DNAIKNHWNSTLKR 110 (252)
Q Consensus 73 ~Ll~lv~~~G~--------~W~~IA~~lpgRT----~~qck~Rw~~~lk~ 110 (252)
.|..+|..+|+ .|.+|+..|.--+ ..+++..|..+|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47788888885 6999999984322 46789999888765
No 107
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=62.63 E-value=13 Score=28.39 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC--------ChHHHHHHhCCCC----HHHHHHHHHHHhhh
Q 040502 73 IIIKAHARYGN--------KWATIARLLNGRT----DNAIKNHWNSTLKR 110 (252)
Q Consensus 73 ~Ll~lv~~~G~--------~W~~IA~~lpgRT----~~qck~Rw~~~lk~ 110 (252)
.|..+|.++|+ .|..|+..|.--+ ...++.+|..+|-+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47788888885 6999999984321 45788889887764
No 108
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.69 E-value=22 Score=24.98 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 70 EDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 70 ED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
.+..++.++...|-.-.+||..| |-+...|+.+....+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445556556678899999999 99999999988765544
No 109
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=58.19 E-value=9 Score=27.85 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC--------ChHHHHHHhCCC----CHHHHHHHHHHHhhh
Q 040502 73 IIIKAHARYGN--------KWATIARLLNGR----TDNAIKNHWNSTLKR 110 (252)
Q Consensus 73 ~Ll~lv~~~G~--------~W~~IA~~lpgR----T~~qck~Rw~~~lk~ 110 (252)
.|..+|.+.|+ .|.+|+..|.-- ...+++.+|..+|-+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 37778887774 699999998421 256788888877653
No 110
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=57.77 E-value=14 Score=33.88 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHHHhC-CChHHHHHHhC-CCCHHHHHHHHHHHhhhhh
Q 040502 64 RTFTPDEDEIIIKAHARYG-NKWATIARLLN-GRTDNAIKNHWNSTLKRKY 112 (252)
Q Consensus 64 ~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~qck~Rw~~~lk~k~ 112 (252)
+.||.-|=..++.+...|| +.-..||..|. |+|...|+. |...+=.++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry 173 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNI 173 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhh
Confidence 4699999999999999999 56999999997 999999995 444443333
No 111
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=54.16 E-value=17 Score=28.61 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhhh
Q 040502 69 DEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYAE 114 (252)
Q Consensus 69 eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~ 114 (252)
+-|..|+.+..+.| -.|.+||+.+ |=|...|+.|++.+....+-.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 55788888887776 4699999999 999999999999887776543
No 112
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=53.65 E-value=24 Score=27.01 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCC--------ChHHHHHHhC--CC---CHHHHHHHHHHHhhh
Q 040502 72 EIIIKAHARYGN--------KWATIARLLN--GR---TDNAIKNHWNSTLKR 110 (252)
Q Consensus 72 ~~Ll~lv~~~G~--------~W~~IA~~lp--gR---T~~qck~Rw~~~lk~ 110 (252)
-.|..+|..+|+ .|..|+..|. .. ....++.+|..+|.+
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 457788888885 6999999983 22 257889999988865
No 113
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=52.53 E-value=22 Score=28.00 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC--------ChHHHHHHhCC--C---CHHHHHHHHHHHhhh
Q 040502 73 IIIKAHARYGN--------KWATIARLLNG--R---TDNAIKNHWNSTLKR 110 (252)
Q Consensus 73 ~Ll~lv~~~G~--------~W~~IA~~lpg--R---T~~qck~Rw~~~lk~ 110 (252)
.|..+|...|+ .|.+|+..|.- . ....++..|..+|-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 47788888885 69999999832 1 256889999988765
No 114
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=51.58 E-value=35 Score=23.73 Aligned_cols=40 Identities=8% Similarity=0.203 Sum_probs=29.0
Q ss_pred HHHHHHHHHHH----hCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 70 EDEIIIKAHAR----YGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 70 ED~~Ll~lv~~----~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
.+..++.+..- .|-.+.+||..| |-|...|+.+-...+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34444555443 467899999999 99999999987766544
No 115
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=49.41 E-value=12 Score=27.74 Aligned_cols=38 Identities=18% Similarity=0.459 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC--------ChHHHHHHhCC--C---CHHHHHHHHHHHhhh
Q 040502 73 IIIKAHARYGN--------KWATIARLLNG--R---TDNAIKNHWNSTLKR 110 (252)
Q Consensus 73 ~Ll~lv~~~G~--------~W~~IA~~lpg--R---T~~qck~Rw~~~lk~ 110 (252)
.|..+|..+|+ .|.+|+..|.- . ...+++..|..+|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 47778888874 69999999842 1 246789999888764
No 116
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=48.01 E-value=44 Score=21.93 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHH
Q 040502 69 DEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNH 103 (252)
Q Consensus 69 eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~R 103 (252)
-|.+.|.+++..+++++.+.|+.| |=+...+..+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rk 52 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 477888899999999999999999 6666555443
No 117
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=47.94 E-value=43 Score=22.28 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 66 FTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 66 WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
+|+.|-+.| .++ ..|-.-.+||..| |-+...++.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455555444 444 5678899999999 88999999988766554
No 118
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=47.11 E-value=46 Score=21.68 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 65 TFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 65 ~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
.+|+.|-+.|.- + ..|..-.+||..| |-+...++.+....+++
T Consensus 11 ~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 11 LLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467777665554 4 5678899999999 88999999888765543
No 119
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=46.99 E-value=57 Score=23.09 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=34.9
Q ss_pred CCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 63 HRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 63 ~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
....|+.|-+.|.-+ . .|..-.+||..| |-+...|+.+...++++
T Consensus 27 ~~~Lt~rE~~Vl~l~-~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEV-E-KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHH-H-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH-H-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345788877766544 3 788899999999 99999999998877654
No 120
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.53 E-value=29 Score=26.62 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCCcCCCCHHHH--HHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCC--
Q 040502 8 ERVKGPWSPEED--QLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGN-- 83 (252)
Q Consensus 8 ~~~Kg~WT~eED--~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~-- 83 (252)
..-+-+|.+.+. +.|.+..+..|.. ...+. .+.||.- + --.|..+|.++|+
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P-~i~gk~l-----------D------------L~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGIT-MDELP-LIGGCEL-----------D------------LACFFRLINEMGGMQ 58 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTCC-CSSCC-EETTEEC-----------C------------HHHHHHHHHHTTSHH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCCC-CCCCC-cCCCEec-----------c------------HHHHHHHHHHcCcHH
Confidence 344667988776 4567777777752 33332 1222221 1 1237788888885
Q ss_pred ------ChHHHHHHhC--CC---CHHHHHHHHHHHhhh
Q 040502 84 ------KWATIARLLN--GR---TDNAIKNHWNSTLKR 110 (252)
Q Consensus 84 ------~W~~IA~~lp--gR---T~~qck~Rw~~~lk~ 110 (252)
.|..||..|. .- ....++.+|..+|-+
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 6999999983 21 246789999887765
No 121
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.22 E-value=53 Score=23.27 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 65 TFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 65 ~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
..|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467666665554 4 6788899999999 89999999988766654
No 122
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=43.70 E-value=53 Score=22.59 Aligned_cols=43 Identities=33% Similarity=0.388 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 65 TFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 65 ~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 36766665554 44 5788899999999 89999999988766554
No 123
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=43.59 E-value=44 Score=25.96 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=23.9
Q ss_pred hCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 81 YGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 81 ~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
.|-...+||..| |-+...|+.+....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467899999999 89999999988765543
No 124
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=42.65 E-value=50 Score=25.12 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhhh
Q 040502 69 DEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYAE 114 (252)
Q Consensus 69 eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~ 114 (252)
+-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+....+-.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 45667888877776 5799999999 889999999999887766543
No 125
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=41.59 E-value=47 Score=26.37 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhh
Q 040502 68 PDEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYA 113 (252)
Q Consensus 68 ~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~ 113 (252)
.+-|..|+.++...| -.+.+||+.+ |-+...|..|.+.+....+-
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 455777888888777 5799999999 89999999999888766543
No 126
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=40.15 E-value=61 Score=23.93 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 70 EDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 70 ED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
.+..++.++...|-...+||..| |-+...++.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 33445556556788999999999 99999999887755443
No 127
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=39.70 E-value=59 Score=24.79 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhh
Q 040502 69 DEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYA 113 (252)
Q Consensus 69 eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~ 113 (252)
+-|..|+.+....| -.+.+||+.+ |-+...|..|.+.+....+-
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 34667778777776 5799999999 89999999999988776654
No 128
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=39.29 E-value=57 Score=24.26 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=24.2
Q ss_pred HhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 80 RYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 80 ~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
..|-...+||..| |-|...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 99999999988765543
No 129
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.46 E-value=72 Score=19.98 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 71 DEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 71 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
+..++.++ ..|-.-.+||..| |-+...++.+....+++
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34455553 5688889999999 89999999988766654
No 130
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=37.88 E-value=62 Score=22.87 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHH
Q 040502 68 PDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNH 103 (252)
Q Consensus 68 ~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~R 103 (252)
.-|.+.|.+++..+|++....|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888899999999999999999 7777666544
No 131
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=36.96 E-value=62 Score=22.50 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 65 TFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 65 ~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 36677766654 44 5788899999999 99999999988766654
No 132
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=34.89 E-value=96 Score=22.90 Aligned_cols=42 Identities=21% Similarity=0.140 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhh
Q 040502 66 FTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLK 109 (252)
Q Consensus 66 WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk 109 (252)
+++.+ ..++.++...|..-.+||..+ |-|...|+.+....++
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 45544 445555557788999999999 9999999988776554
No 133
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=34.63 E-value=68 Score=25.57 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=24.1
Q ss_pred HhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 80 RYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 80 ~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
..|-...+||..| |-|...|+.+....+++
T Consensus 201 ~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 201 YEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp TSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 99999999887765543
No 134
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=32.52 E-value=87 Score=23.75 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhhh
Q 040502 69 DEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYAE 114 (252)
Q Consensus 69 eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~ 114 (252)
+-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+....+-.
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCcc
Confidence 34667888887776 4799999999 889999999999887776554
No 135
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=31.55 E-value=87 Score=24.09 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhhh
Q 040502 69 DEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYAE 114 (252)
Q Consensus 69 eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~ 114 (252)
+-|..|+.++...| -.+.+||+.+ |-+...|..+...+....+-.
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEe
Confidence 44667777777776 5799999999 889999999999887776544
No 136
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=30.06 E-value=81 Score=22.22 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHH
Q 040502 67 TPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNH 103 (252)
Q Consensus 67 T~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~R 103 (252)
..-|.+.|.+++.+++++..+.|+.| |=+...+..+
T Consensus 39 ~~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyrK 74 (81)
T 1umq_A 39 DRVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQRI 74 (81)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHH
Confidence 34567788899999999999999999 7676655443
No 137
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=29.19 E-value=1.5e+02 Score=21.25 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=34.3
Q ss_pred CCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 64 RTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 64 ~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
...|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...++++
T Consensus 33 ~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 33 KRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4578888776644 4 3688899999999 88999999988766554
No 138
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=29.17 E-value=57 Score=26.55 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=25.6
Q ss_pred CcccCCCCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 040502 59 PEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWN 105 (252)
Q Consensus 59 p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~ 105 (252)
|....|-||.++|+.|. ++.=..|.+....-....+..||+
T Consensus 110 P~N~pGIWT~eDDe~L~------s~d~~dikrL~kKHG~erie~R~~ 150 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK------SNDQEQIRKLVKKHGTGRMEMRKR 150 (168)
T ss_dssp CTTCTTCCCHHHHHHHH------SCCHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH------cCCHHHHHHHHHHhCHHHHHHHHH
Confidence 45678999999999886 333344544443334455555554
No 139
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=28.59 E-value=18 Score=28.71 Aligned_cols=35 Identities=23% Similarity=0.538 Sum_probs=27.5
Q ss_pred ccccccccccccccccccccccCCCcccCCCCChHHHHHHHH
Q 040502 35 SVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIK 76 (252)
Q Consensus 35 ~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~ 76 (252)
..||..+.|+|..+||.-+. +. ..||+||++.|.+
T Consensus 119 ~~vA~~ikgkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 57888899999999998772 22 2499999988764
No 140
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=28.32 E-value=96 Score=22.81 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHH
Q 040502 67 TPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKN 102 (252)
Q Consensus 67 T~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~ 102 (252)
+..-+..|..+....|..|..+|+.| |=+..++..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 55667778888888999999999999 777765543
No 141
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=27.85 E-value=1.1e+02 Score=22.70 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhh
Q 040502 70 EDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYA 113 (252)
Q Consensus 70 ED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~ 113 (252)
-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+....+-
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i 48 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGII 48 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 3566777776666 4799999999 89999999999888766544
No 142
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=27.31 E-value=1.1e+02 Score=24.04 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhhh
Q 040502 68 PDEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYAE 114 (252)
Q Consensus 68 ~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~ 114 (252)
.+-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+....+-.
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQL-KKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 345667778777766 5799999999 899999999999887766543
No 143
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=27.16 E-value=84 Score=23.69 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhhh
Q 040502 69 DEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYAE 114 (252)
Q Consensus 69 eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~ 114 (252)
+-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+....+-.
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREI-RIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEE
Confidence 34667777777666 5799999999 889999999999887776543
No 144
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=26.22 E-value=29 Score=26.87 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=23.2
Q ss_pred hCCChHHHHHHhCCCCHHHHHHHHHHHhhh
Q 040502 81 YGNKWATIARLLNGRTDNAIKNHWNSTLKR 110 (252)
Q Consensus 81 ~G~~W~~IA~~lpgRT~~qck~Rw~~~lk~ 110 (252)
.|-...+||..| |-+...|+++....+++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466788999999 88999999988766543
No 145
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=25.92 E-value=93 Score=23.37 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCChHHHHHHhCCCCHHHH
Q 040502 73 IIIKAHARYGNKWATIARLLNGRTDNAI 100 (252)
Q Consensus 73 ~Ll~lv~~~G~~W~~IA~~lpgRT~~qc 100 (252)
.|..+....|..|..+|+.| |=+..+|
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 45556788899999999998 6666654
No 146
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.66 E-value=1e+02 Score=21.10 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHHhC---C-ChHHHHHHhCCCCHHHHHHHHHHHhhhh
Q 040502 66 FTPDEDEIIIKAHARYG---N-KWATIARLLNGRTDNAIKNHWNSTLKRK 111 (252)
Q Consensus 66 WT~eED~~Ll~lv~~~G---~-~W~~IA~~lpgRT~~qck~Rw~~~lk~k 111 (252)
.|.+-|+.|+.++...| . .=.+||+.| |-+...|..+-..+.+..
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 35677788999999888 2 479999999 788888887766655543
No 147
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=24.78 E-value=87 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHhCCCCHHHHH
Q 040502 71 DEIIIKAHARYGNKWATIARLLNGRTDNAIK 101 (252)
Q Consensus 71 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck 101 (252)
|..|..+....|..|..+|+.| |=+..++.
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~ 42 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQ 42 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 3456677788899999999999 66666553
No 148
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.33 E-value=1.5e+02 Score=20.74 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHhC----CChHHHHHHhCCCCHHHHHHHHHHHhhhh
Q 040502 67 TPDEDEIIIKAHARYG----NKWATIARLLNGRTDNAIKNHWNSTLKRK 111 (252)
Q Consensus 67 T~eED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~lk~k 111 (252)
+.+-|+.|+.++.+.| -.=.+||+.| |-+...|+.+-+.+.+..
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 3455788899999988 2578999999 788888888766655443
No 149
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=23.31 E-value=1.6e+02 Score=22.09 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHhhhhhhh
Q 040502 69 DEDEIIIKAHARYG-NKWATIARLLNGRTDNAIKNHWNSTLKRKYAE 114 (252)
Q Consensus 69 eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~lk~k~~~ 114 (252)
+-|..|+.++...| -...+||+.+ |-+...|..+.+.+....+-.
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKI-KLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 34667888877776 5799999999 889999999998877665543
No 150
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.14 E-value=1.1e+02 Score=17.41 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHH
Q 040502 65 TFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHW 104 (252)
Q Consensus 65 ~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~Rw 104 (252)
..++++-..++.++ .-|....+||+.| |-+...++...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666677665 4577899999999 88888776643
No 151
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.98 E-value=87 Score=23.48 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCChHHHHHHhCCCCHHHHH
Q 040502 73 IIIKAHARYGNKWATIARLLNGRTDNAIK 101 (252)
Q Consensus 73 ~Ll~lv~~~G~~W~~IA~~lpgRT~~qck 101 (252)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 45556788899999999998 66666543
No 152
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=22.24 E-value=1.7e+02 Score=21.09 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHH
Q 040502 68 PDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNH 103 (252)
Q Consensus 68 ~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qck~R 103 (252)
.-|...|..++..+|++....|+.| |=+...++.+
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~L-GIsR~TL~rk 91 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMM-GINRGTLRKK 91 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHH
Confidence 3467788888999999999999999 7777666543
No 153
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=21.49 E-value=2.1e+02 Score=20.65 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=23.6
Q ss_pred CCChHHHHHHhCCCCHHHHHHHHHHHhhhh
Q 040502 82 GNKWATIARLLNGRTDNAIKNHWNSTLKRK 111 (252)
Q Consensus 82 G~~W~~IA~~lpgRT~~qck~Rw~~~lk~k 111 (252)
|-.+.+||..| |-|...|+.+-...+++-
T Consensus 39 ~~s~~EIA~~l-giS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 39 DYTLEEVGKQF-DVTRERIRQIEAKALRKL 67 (99)
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46799999999 899999998877666543
Done!