BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040503
(767 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 233/641 (36%), Positives = 349/641 (54%), Gaps = 53/641 (8%)
Query: 115 TTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWK 174
TTRSWDFLG P + ++++ ++++ +D+G+WPES SF D+G P P KWK
Sbjct: 1 TTRSWDFLGF-------PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 175 GICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEXXXXXXXXX 234
G C+ N CN+K+IG R + G + P ++ RD
Sbjct: 54 GTCETSN--NFRCNRKIIGARSYHIG----------RPISPGDVNGPRDTNGHGTHTAST 101
Query: 235 XXXNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGV 294
V ++YG G GTA+GG P AR+AAYKVCW ND C+ DIL+AYD AI DGV
Sbjct: 102 AAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW----NDGCSDTDILAAYDDAIADGV 157
Query: 295 DVISASLGSI-AREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGA 353
D+IS S+G R + + IAIGSFHA+ GI++ +AGN GP+ + +++PW+L+V A
Sbjct: 158 DIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 217
Query: 354 STTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKG 413
ST DR+F + V +GN +G S++ D YPL+ G D + + C
Sbjct: 218 STMDRKFVTQVQIGNGQSFQGVSINTF----DNQYYPLVSGRDIPNTGFDKSTSRFCTDK 273
Query: 414 SIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLN 473
S++P ++GKI++C A +G + + + GA G+++ S+ + LP++ L+
Sbjct: 274 SVNPNLLKGKIVVCE-ASFGPHE-FFKSLDGAAGVLMTSNTRD----YADSYPLPSSVLD 327
Query: 474 YTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPG 533
D + YI S ++P A++ S T N + ++ F+SRGPN + KPD++ PG
Sbjct: 328 PNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPG 386
Query: 534 VDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSA 593
V+I+AA+ +P +R + ++SGTSMSCPH+ GI VKT +P WSPAAIKSA
Sbjct: 387 VEILAAWPSV---APVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSA 443
Query: 594 IMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDR 653
+MTTA ++ P + FAYG+GHVNP A+ PGLVYD DY+ ++C +
Sbjct: 444 LMTTASPMNARFNPQAE---------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQ 494
Query: 654 GYNQSTIDLFTAP-KKFTCPKSFNLADFNYPSIAV---PKLNGTITFTRKVKNVGAANST 709
GYN + T T + + D NYPS + P F R + +V ST
Sbjct: 495 GYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQAST 554
Query: 710 YKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAF--SVKG 748
Y+A S G++ V P++L+F G+ K+F + S+KG
Sbjct: 555 YRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKG 595
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 347 bits (889), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 237/654 (36%), Positives = 346/654 (52%), Gaps = 56/654 (8%)
Query: 115 TTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWK 174
TT + DFL L P W + G+DVI+A +DSG+WPES SF DDGM IP +WK
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 175 GICQ-NDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEXXXXXXXX 233
GIC+ + CN+KLIG Y N+G + A +P I N + RD +
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGIL----ANDPTVNITMN--SARDTDGHGTHCAS 109
Query: 234 XXXXNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDG 293
NF VS +G GTA+G +P+AR+A YK + N+ ++D+++A D A+ DG
Sbjct: 110 ITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF----NEGTFTSDLIAAMDQAVADG 165
Query: 294 VDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGA 353
VD+IS S G ++ I+I SF AMM G++ A+AGN GP GS+ N +PWIL V +
Sbjct: 166 VDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVAS 225
Query: 354 STTDREFTSYVTLGNKMVIKGASV-SQKGLLNDLDSYPLIGGADARIANVSEIDASECKK 412
TDR F +TLGN + I+G S+ + + D P+I +S+ + E
Sbjct: 226 GHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRD---SPVIYNK-----TLSDCSSEELLS 277
Query: 413 GSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV------GMILVSSKESGNKVLNMVHH 466
+P + I+IC D+ G ++ Q + I +S E +
Sbjct: 278 QVENP---ENTIVIC------DDNGDFSDQMRIITRARLKAAIFIS--EDPGVFRSATFP 326
Query: 467 LPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFK 526
P +N +G+ V Y+ ++ PTA++T +T +T+P+ ++A ++RGP+ I K
Sbjct: 327 NPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISK 386
Query: 527 PDVTAPGVDIIAAFT-EASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDW 585
PD+ APGV I+AA+ S YI+ SGTSM+ PH AGI ++K HP+W
Sbjct: 387 PDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEW 446
Query: 586 SPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFED 645
SP+AI+SA+MTTA D++ +PI D + + ATP GAGHV+PN ALDPGLVYD T +D
Sbjct: 447 SPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQD 506
Query: 646 YLGYICDRGYNQS---TIDLFTAPKKFTCPKSFNLADFNYPS-IAVPKLNGTIT-----F 696
Y+ +C + + TI +A + P AD NYPS IA+ + G T F
Sbjct: 507 YVNLLCSLNFTEEQFKTIARSSASHNCSNPS----ADLNYPSFIALYSIEGNFTLLEQKF 562
Query: 697 TRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDD 750
R V NVG +TYKA+ + V P IL F E++++ + GD+
Sbjct: 563 KRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDE 616
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Query: 512 FTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHV 571
F+SRGP + KP+V APG IIAA ASG S + Y GT+M+ PHV
Sbjct: 312 FSSRGPTADNR--LKPEVVAPGNWIIAA--RASGTSMGQPINDY--YTAAPGTAMATPHV 365
Query: 572 AGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNS 631
AGI L+ HP W+P +K+A++ TA D ++ AYGAG VN
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIETA-----------DIVKPDEIADIAYGAGRVNAYK 414
Query: 632 ALDPGLVYDLTFEDYLGYICDRG 654
A LTF GY+ ++G
Sbjct: 415 AAYYDNYAKLTFT---GYVSNKG 434
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 251 GTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD----GVDVISASLGSIAR 306
G KG +P A++ KV N S + +DI++ D A+ + G+ VI+ SLGS
Sbjct: 197 GKYKGMAPGAKLVGIKVL---NGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQS 253
Query: 307 EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVEN--VAPWILTVGA 353
++++ +A G+V V AAGNSGP+ +V + A ++TVGA
Sbjct: 254 SDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 172/425 (40%), Gaps = 85/425 (20%)
Query: 280 ADILSAYDLAIHDGVD----VISASLG--SIAREHLKNTIAIGSFHAMMNGIVSVAAAGN 333
AD Y AI D V+ VI+ S G ++A +L + +A G+ V +AGN
Sbjct: 140 ADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGN 199
Query: 334 SG-------------PDDGSVEN--VAPWILTVGASTTDREFTSYVTLGNKMVIKGASVS 378
PD G V A LTV + + D++ T T +K
Sbjct: 200 DSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT------VKTDDHQ 253
Query: 379 QKGLLNDLDSYPLIGGADARIANVSEIDASECKKG--SIDPAKVQGKI-LICYGARYGDE 435
K + P++ + R D + +G D V+GKI LI G +
Sbjct: 254 AKEM-------PVL--STNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKD 304
Query: 436 KGQWAAQAGAVGMILVSSKESGNKV-LNMVHHLPTAHLNYTDGESVYAYINSTQNPTASM 494
K A +AGAVG+++ +++ G + L V +P A ++ DG + T A+
Sbjct: 305 KIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATP 364
Query: 495 TNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKR 554
T +T+ SR ++ + N+ KPD+ APG DI+++
Sbjct: 365 KVLPTASDTKLSRFSSWGLTADGNI------KPDIAAPGQDILSSVANNK---------- 408
Query: 555 RIPYIMMSGTSMSCPHVAGIVGLVK----TLHPDWSPAA----IKSAIMTTARAEDSSNR 606
Y +SGTSMS P VAGI+GL++ T +PD +P+ K +M++A A
Sbjct: 409 ---YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATA------ 459
Query: 607 PILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAP 666
+ D++ +P GAG V+ A + Y+ D+ S + L
Sbjct: 460 -LYDEDEKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSSKVHLNNVS 507
Query: 667 KKFTC 671
KF
Sbjct: 508 DKFEV 512
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 158/389 (40%), Gaps = 80/389 (20%)
Query: 280 ADILSAYDLAIHD----GVDVISASLG--SIAREHLKNTIAIGSFHAMMNGIVSVAAAGN 333
AD Y AI D G VI+ S G ++A +L + +A G+ V +AGN
Sbjct: 131 ADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGN 190
Query: 334 SG-------------PDDGSVEN--VAPWILTVGASTTDREFTSYVTLGNKMVIKGASVS 378
PD G V A LTV + + D++ T V +K A
Sbjct: 191 DSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVR------VKTADQQ 244
Query: 379 QKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSI--DPAKVQGKI-LICYGARYGDE 435
K P++ + R D + +G+ D V+GKI LI G +
Sbjct: 245 DK-------EXPVL--STNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKD 295
Query: 436 KGQWAAQAGAVGMILVSSKESGNKV-LNMVHHLPTAHLNYTDGESVYAYINSTQNPTASM 494
K A +AGAVG+++ +++ G + L V P A ++ DG + NP ++
Sbjct: 296 KIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDG------LLLKDNPQKTI 349
Query: 495 TNSKTEFNTRPSRM-------MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPS 547
T FN P + ++ F+S G + KPD+ APG DI+++
Sbjct: 350 T-----FNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVANNK--- 399
Query: 548 PDETHKRRIPYIMMSGTSMSCPHVAGIVGLVK----TLHPDWSPAAIKSAIMTTARAEDS 603
Y +SGTS S P VAGI GL++ T +PD +P+ + + S
Sbjct: 400 ----------YAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPS---ERLDLAKKVLXS 446
Query: 604 SNRPILDQNTGEKATPFAYGAGHVNPNSA 632
S + D++ +P GAG V+ A
Sbjct: 447 SATALYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGV++ + + P T Y ++GTSM+ PHVAG+ LVK +P WS
Sbjct: 191 DIVAPGVNVQSTY-------PGST------YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 588 AAIKSAIMTTARAEDSSN 605
I++ + TA ++N
Sbjct: 238 VQIRNHLKNTATGLGNTN 255
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGV++ + + P T Y ++GTSM+ PHVAG LVK +P WS
Sbjct: 191 DIVAPGVNVQSTY-------PGST------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 588 AAIKSAIMTTARAEDSSN 605
I++ + TA + S+N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGV++ + + P T Y ++GTSM+ PHVAG LVK +P WS
Sbjct: 191 DIVAPGVNVQSTY-------PGST------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 588 AAIKSAIMTTARAEDSSN 605
I++ + TA + S+N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGV++ + + P T Y ++GTSM+ PHVAG LVK +P WS
Sbjct: 191 DIVAPGVNVQSTY-------PGST------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 588 AAIKSAIMTTARAEDSSN 605
I++ + TA + S+N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGV++ + + P T Y ++GTSM+ PHVAG LVK +P WS
Sbjct: 191 DIVAPGVNVQSTY-------PGST------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 588 AAIKSAIMTTARAEDSSN 605
I++ + TA + S+N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGV++ + + P T Y ++GTSM+ PHVAG LVK +P WS
Sbjct: 191 DIVAPGVNVQSTY-------PGST------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 588 AAIKSAIMTTARAEDSSN 605
I++ + TA + S+N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 38/128 (29%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I++ P + + SGT+
Sbjct: 174 SNQRASFSSVGPEL--------DVMAPGVSIVSTL-------PGNKYGAK------SGTA 212
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFAYGA 624
M+ PHVAG L+ + HP+W+ ++S++ TT + DS F YG
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FYYGK 256
Query: 625 GHVNPNSA 632
G +N +A
Sbjct: 257 GLINVQAA 264
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 21/93 (22%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + Y +SGTS
Sbjct: 174 SNQRAPFSSVGPEL--------DVMAPGVSICSTLPGGK-------------YGALSGTS 212
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTA 598
M+ PHVAG L+ + HP+W+ ++S++ TA
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 36/127 (28%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + P + + SGTS
Sbjct: 174 SNQRASFSSVGPEL--------DVMAPGVSICSTL-------PGNKYGAK------SGTS 212
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAG 625
M+ PHVAG L+ + HP+W+ ++S+ L+ T + F YG G
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSS---------------LENTTTKLGNSFYYGKG 257
Query: 626 HVNPNSA 632
+N +A
Sbjct: 258 LINVQAA 264
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 38/128 (29%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I++ P + + SGT+
Sbjct: 174 SNQRASFSSVGPEL--------DVMAPGVSIVSTL-------PGNKYGAK------SGTA 212
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFAYGA 624
M+ PHVAG L+ + HP+W+ ++S++ TT + DS F YG
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FYYGK 256
Query: 625 GHVNPNSA 632
G +N +A
Sbjct: 257 GLINVEAA 264
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 38/128 (29%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + P + + SGTS
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSICSTL-------PGNKYGAK------SGTS 221
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFAYGA 624
M+ PHVAG L+ + HP+W+ ++S++ TT + DS F YG
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FYYGK 265
Query: 625 GHVNPNSA 632
G +N +A
Sbjct: 266 GLINVQAA 273
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 38/128 (29%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + P + + SGTS
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSICSTL-------PGNKYGAK------SGTS 221
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFAYGA 624
M+ PHVAG L+ + HP+W+ ++S++ TT + DS F YG
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FYYGK 265
Query: 625 GHVNPNSA 632
G +N +A
Sbjct: 266 GLINVQAA 273
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 38/128 (29%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + P + + SGTS
Sbjct: 174 SNQRASFSSVGPEL--------DVMAPGVSICSTL-------PGNKYGAK------SGTS 212
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFAYGA 624
M+ PHVAG L+ + HP+W+ ++S++ TT + DS F YG
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FYYGK 256
Query: 625 GHVNPNSA 632
G +N +A
Sbjct: 257 GLINVEAA 264
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 38/128 (29%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + P + + SGTS
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTL-------PGNKYGAK------SGTS 221
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFAYGA 624
M+ PHVAG L+ + HP+W+ ++S++ TT + DS F YG
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FYYGK 265
Query: 625 GHVNPNSA 632
G +N +A
Sbjct: 266 GLINVQAA 273
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 21/93 (22%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + Y +SGT+
Sbjct: 174 SNQRAPFSSVGPEL--------DVMAPGVSICSTLPGGK-------------YGALSGTA 212
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTA 598
M+ PHVAG L+ + HP+W+ ++S++ TA
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 38/128 (29%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + P Y SGTS
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIXSTL-------PGNK------YGAYSGTS 221
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFAYGA 624
M+ PHVAG L+ + HP+W+ ++S++ TT + DS F YG
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FYYGK 265
Query: 625 GHVNPNSA 632
G +N +A
Sbjct: 266 GLINVQAA 273
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGV++ + + P T Y ++GT M+ PHVAG LVK +P WS
Sbjct: 191 DIVAPGVNVQSTY-------PGST------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 588 AAIKSAIMTTARAEDSSN 605
I++ + TA + S+N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGV++ + + P T Y ++GT M+ PHVAG LVK +P WS
Sbjct: 191 DIVAPGVNVQSTY-------PGST------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 588 AAIKSAIMTTARAEDSSN 605
I++ + TA + S+N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGV++ + + P T Y ++GT M+ PHVAG LVK +P WS
Sbjct: 191 DIVAPGVNVQSTY-------PGST------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 588 AAIKSAIMTTARAEDSSN 605
I++ + TA + S+N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGV++ + + P T Y ++GT M+ PHVAG LVK +P WS
Sbjct: 191 DIVAPGVNVQSTY-------PGST------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 588 AAIKSAIMTTARAEDSSN 605
I++ + TA + S+N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 44/131 (33%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP---YIMMS 562
S A F+S GP + DV APGV I + +P Y +
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSI----------------QSTLPGNKYGAYN 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFA 621
GTSM+ PHVAG L+ + HP+W+ ++S++ TT + DS F
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS----------------FY 262
Query: 622 YGAGHVNPNSA 632
YG G +N +A
Sbjct: 263 YGKGLINVQAA 273
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 44/131 (33%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP---YIMMS 562
S A F+S GP + DV APGV I + +P Y +
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSI----------------QSTLPGNKYGAYN 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFA 621
GTSM+ PHVAG L+ + HP+W+ ++S++ TT + DS F
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS----------------FY 262
Query: 622 YGAGHVNPNSA 632
YG G +N +A
Sbjct: 263 YGKGLINVQAA 273
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + P Y SGTS
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIXSTL-------PGNK------YGAYSGTS 221
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597
M+ PHVAG L+ + HP+W+ ++S++ T
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 38/128 (29%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + P + + SGT
Sbjct: 174 SNQRASFSSVGPEL--------DVMAPGVSICSTL-------PGNKYGAK------SGTX 212
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFAYGA 624
M+ PHVAG L+ + HP+W+ ++S++ TT + DS F YG
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FYYGK 256
Query: 625 GHVNPNSA 632
G +N +A
Sbjct: 257 GLINVEAA 264
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 44/131 (33%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP---YIMMS 562
S A F+S GP + DV APGV I + +P Y +
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSI----------------QSTLPGNKYGAYN 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFA 621
GTSM+ PHVAG L+ + HP+W+ ++S++ TT + DS F
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FY 262
Query: 622 YGAGHVNPNSA 632
YG G +N +A
Sbjct: 263 YGKGLINVQAA 273
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 38/128 (29%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + P + + SGT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTL-------PGNKYGAK------SGTX 221
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFAYGA 624
M+ PHVAG L+ + HP+W+ ++S++ TT + DS F YG
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FYYGK 265
Query: 625 GHVNPNSA 632
G +N +A
Sbjct: 266 GLINVQAA 273
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 44/131 (33%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP---YIMMS 562
S A F+S GP + DV APGV I + +P Y S
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSI----------------QSTLPGNKYGAYS 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFA 621
GT M+ PHVAG L+ + HP+W+ ++S++ TT + DS F
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FY 262
Query: 622 YGAGHVNPNSA 632
YG G +N +A
Sbjct: 263 YGKGLINVQAA 273
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 44/131 (33%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP---YIMMS 562
S A F+S GP + DV APGV I + +P Y +
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSI----------------QSTLPGNKYGAYN 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFA 621
GTSM+ PHVAG L+ + HP+W+ ++S++ TT + DS F
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FY 262
Query: 622 YGAGHVNPNSA 632
YG G +N +A
Sbjct: 263 YGKGLINVEAA 273
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 28/102 (27%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP---YIMMS 562
S A F+S GP + DV APGV I + +P Y +
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSI----------------QSTLPGNKYGAYN 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDS 603
GTSM+ PHVAG L+ + HP+W+ ++S++ TT + DS
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 44/131 (33%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP---YIMMS 562
S A F+S GP + DV APGV I + +P Y S
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSI----------------QSTLPGNKYGAYS 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFA 621
GT M+ PHVAG L+ + HP+W+ ++S++ TT + DS F
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FY 262
Query: 622 YGAGHVNPNSA 632
YG G +N +A
Sbjct: 263 YGKGLINVQAA 273
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 38/128 (29%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S GP + DV APGV I + P + + SGT
Sbjct: 171 SNQRASFSSVGPEL--------DVMAPGVSIWSTL-------PGNKYGAK------SGTX 209
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFAYGA 624
M+ PHVAG L+ + HP+W+ ++S++ TT + DS F YG
Sbjct: 210 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FYYGK 253
Query: 625 GHVNPNSA 632
G +N +A
Sbjct: 254 GLINVEAA 261
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 44/131 (33%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP---YIMMS 562
S A F+S GP + DV APGV I + +P Y +
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSI----------------QSTLPGNKYGAYN 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFA 621
GT M+ PHVAG L+ + HP+W+ ++S++ TT + DS F
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FY 262
Query: 622 YGAGHVNPNSA 632
YG G +N +A
Sbjct: 263 YGKGLINVQAA 273
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 44/131 (33%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP---YIMMS 562
S A F+S GP + DV APGV I + +P Y +
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSI----------------QSTLPGNKYGAYN 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFA 621
GT M+ PHVAG L+ + HP+W+ ++S++ TT + DS F
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FY 262
Query: 622 YGAGHVNPNSA 632
YG G +N +A
Sbjct: 263 YGKGLINVQAA 273
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 44/131 (33%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP---YIMMS 562
S A F+S GP + DV APGV I + +P Y +
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSI----------------QSTLPGNKYGAYN 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM-TTARAEDSSNRPILDQNTGEKATPFA 621
GTS + PHVAG L+ + HP+W+ ++S++ TT + DS F
Sbjct: 219 GTSXASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS----------------FY 262
Query: 622 YGAGHVNPNSA 632
YG G +N +A
Sbjct: 263 YGKGLINVQAA 273
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 36/123 (29%)
Query: 510 AFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCP 569
A F+S G + DV APGV I + P T Y +GTSM+ P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQSTL-------PGGT------YGAYNGTSMATP 225
Query: 570 HVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNP 629
HVAG L+ + HP W+ A ++ + +TA SS F YG G +N
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGSS---------------FYYGKGLINV 270
Query: 630 NSA 632
+A
Sbjct: 271 QAA 273
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Query: 255 GGSPKARVAAYKVCWKPNENDSCASAD---ILSAYDLAIHDGVDVISASLGS-IAREHLK 310
G +P A + A KV DS S I++ + AI + +DVI+ SLG LK
Sbjct: 83 GVAPSASLYAVKVL------DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALK 136
Query: 311 NTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVA-----PWILTVGASTTDREFTSYVT 365
+ A+ +GIV AAAGN G GS V P + VGA + + S+ +
Sbjct: 137 TVVD----KAVSSGIVVAAAAGNEG-SSGSTSTVGYPAKYPSTIAVGAVNSANQRASFSS 191
Query: 366 LGNKMVIKGASVSQKGLL 383
G+++ + VS + L
Sbjct: 192 AGSELDVMAPGVSIQSTL 209
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 508 MMAFFTSRGPNMIDPAIF--KPDVTAPGVDII----AAFTEASGPSPDETHKRRIPYIMM 561
++ + S P + +P + D+T P V + A G S +++ Y
Sbjct: 306 IIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYY 365
Query: 562 SGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTA 598
+GTSM+ PHV+G+ LV + HP+ S + +++A+ TA
Sbjct: 366 NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 25/149 (16%)
Query: 502 NTRPS--------RMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDET-- 551
N RPS +A F+SRGP KPDV APG I++A S +PD +
Sbjct: 187 NLRPSFGSYADNINHVAQFSSRGP--TKDGRIKPDVMAPGTFILSA---RSSLAPDSSFW 241
Query: 552 --HKRRIPYIMMSGTSMSCPHVAGIVG-----LVKTLHPDWSPAAIKSAIMTTARAEDSS 604
H + Y M GTSM+ P VAG V VK P+ +K+A++ A A+
Sbjct: 242 ANHDSK--YAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA-ADIGL 298
Query: 605 NRPILDQNTGEKATPFAYGAGHVNPNSAL 633
P +Q G + +VN +S+L
Sbjct: 299 GYPNGNQGWGRVTLDKSLNVAYVNESSSL 327
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 21/93 (22%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S G + DV APGV I + P T Y +GT
Sbjct: 183 SNQRASFSSAGSEL--------DVMAPGVSIQSTL-------PGGT------YGAYNGTC 221
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTA 598
M+ PHVAG L+ + HP W+ A ++ + +TA
Sbjct: 222 MATPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Query: 255 GGSPKARVAAYKVCWKPNENDSCASAD---ILSAYDLAIHDGVDVISASLGS-IAREHLK 310
G SP A + A KV DS S I++ + AI + +DVI+ SLG LK
Sbjct: 83 GVSPSASLYAVKVL------DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALK 136
Query: 311 NTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVA-----PWILTVGASTTDREFTSYVT 365
+ A+ +GIV AAAGN G GS V P + VGA + + S+ +
Sbjct: 137 TVVD----KAVSSGIVVAAAAGNEG-SSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSS 191
Query: 366 LGNKMVIKGASVSQKGLL 383
G+++ + VS + L
Sbjct: 192 AGSELDVMAPGVSIQSTL 209
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 21/93 (22%)
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
S A F+S G + DV APGV I + P T Y +GT
Sbjct: 183 SNQRASFSSVGSEL--------DVMAPGVSIQSTL-------PGGT------YGAYNGTX 221
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTA 598
M+ PHVAG L+ + HP W+ A ++ + +TA
Sbjct: 222 MATPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 20/138 (14%)
Query: 255 GGSPKARVAAYKVCWKPNENDSCASAD---ILSAYDLAIHDGVDVISASLGS-IAREHLK 310
G +P A + A KV DS S I++ + AI + +DVI+ SLG LK
Sbjct: 83 GVAPSASLYAVKVL------DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALK 136
Query: 311 NTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVA-----PWILTVGASTTDREFTSYVT 365
+ A+ +GIV AAAGN G GS V P + VGA + + S+ +
Sbjct: 137 TVVD----KAVSSGIVVAAAAGNEG-SSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSS 191
Query: 366 LGNKMVIKGASVSQKGLL 383
+G+++ + VS + L
Sbjct: 192 VGSELDVMAPGVSIQSTL 209
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT+M+ PHV+G+V L++ +
Sbjct: 220 QPEVSAPGVDILSTY-------PDDSYET------LMGTAMATPHVSGVVALIQAAY 263
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTV 351
D +VIS SLG A + + I +++A GIV VAA+GN G S P ++ V
Sbjct: 148 DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAV 204
Query: 352 GASTTDREFTSY 363
GA ++ S+
Sbjct: 205 GAIDSNDNIASF 216
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT+M+ PHV+G+V L++ +
Sbjct: 218 QPEVSAPGVDILSTY-------PDDSYET------LMGTAMATPHVSGVVALIQAAY 261
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTV 351
D +VIS SLG A + + I +++A GIV VAA+GN G S P ++ V
Sbjct: 146 DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAV 202
Query: 352 GASTTDREFTSY 363
GA ++ S+
Sbjct: 203 GAIDSNDNIASF 214
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT+M+ PHV+G+V L++ +
Sbjct: 229 QPEVSAPGVDILSTY-------PDDSYET------LMGTAMATPHVSGVVALIQAAY 272
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTV 351
D +VIS SLG A + + I +++A GIV VAA+GN G S P ++ V
Sbjct: 157 DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAV 213
Query: 352 GASTTDREFTSY 363
GA ++ S+
Sbjct: 214 GAIDSNDNIASF 225
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 28/105 (26%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
+V APG + + + P T Y ++GTSM+ PHVAG L+ + HP+ S
Sbjct: 196 EVMAPGAGVYSTY-------PTNT------YATLNGTSMASPHVAGAAALILSKHPNLSA 242
Query: 588 AAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSA 632
+ +++ + +TA SS F YG G +N +A
Sbjct: 243 SQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 272
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT+M+ PHV+G+V L++ +
Sbjct: 229 QPEVSAPGVDILSTY-------PDDSYET------LMGTAMATPHVSGVVALIQAAY 272
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTV 351
D +VIS SLG A + + I +++A GIV VAA+GN G S P ++ V
Sbjct: 157 DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAV 213
Query: 352 GASTTDREFTSY 363
GA ++ S+
Sbjct: 214 GAIDSNDNIASF 225
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 28/105 (26%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
+V APG + + + P T Y ++GTSM+ PHVAG L+ + HP+ S
Sbjct: 196 EVMAPGAGVYSTY-------PTNT------YATLNGTSMASPHVAGAAALILSKHPNLSA 242
Query: 588 AAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSA 632
+ +++ + +TA SS F YG G +N +A
Sbjct: 243 SQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 272
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 28/105 (26%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
+V APG + + + P T Y ++GTSM+ PHVAG L+ + HP+ S
Sbjct: 197 EVMAPGAGVYSTY-------PTNT------YATLNGTSMASPHVAGAAALILSKHPNLSA 243
Query: 588 AAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSA 632
+ +++ + +TA SS F YG G +N +A
Sbjct: 244 SQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 273
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 28/105 (26%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
+V APG + + + P T Y ++GTSM+ PHVAG L+ + HP+ S
Sbjct: 197 EVMAPGAGVYSTY-------PTNT------YATLNGTSMASPHVAGAAALILSKHPNLSA 243
Query: 588 AAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSA 632
+ +++ + +TA SS F YG G +N +A
Sbjct: 244 SQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 273
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 28/105 (26%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
+V APG + + + P T Y ++GTSM+ PHVAG L+ + HP+ S
Sbjct: 196 EVMAPGAGVYSTY-------PTNT------YATLNGTSMASPHVAGAAALILSKHPNLSA 242
Query: 588 AAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSA 632
+ +++ + +TA SS F YG G +N +A
Sbjct: 243 SQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 272
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 28/105 (26%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
+V APG + + + P T Y ++GTSM+ PHVAG L+ + HP+ S
Sbjct: 196 EVMAPGAGVYSTY-------PTNT------YATLNGTSMASPHVAGAAALILSKHPNLSA 242
Query: 588 AAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSA 632
+ +++ + +TA SS F YG G +N +A
Sbjct: 243 SQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 272
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT+M+ PHV+G+V L++ +
Sbjct: 298 QPEVSAPGVDILSTY-------PDDSYET------LMGTAMATPHVSGVVALIQAAY 341
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTV 351
D +VIS SLG A + + I +++A GIV VAA+GN G S P ++ V
Sbjct: 226 DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAV 282
Query: 352 GASTTDREFTSY 363
GA ++ S+
Sbjct: 283 GAIDSNDNIASF 294
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT+M+ PHV+G+V L++ +
Sbjct: 298 QPEVSAPGVDILSTY-------PDDSYET------LMGTAMATPHVSGVVALIQAAY 341
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTV 351
D +VIS SLG A + + I +++A GIV VAA+GN G S P ++ V
Sbjct: 226 DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAV 282
Query: 352 GASTTDREFTSY 363
GA ++ S+
Sbjct: 283 GAIDSNDNIASF 294
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT+M+ PHV+G+V L++ +
Sbjct: 298 QPEVSAPGVDILSTY-------PDDSYET------LMGTAMATPHVSGVVALIQAAY 341
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 295 DVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGAS 354
+VIS SLG A + + I +++A GIV VAA+GN G S P ++ VGA
Sbjct: 229 EVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAI 285
Query: 355 TTDREFTSY 363
++ S+
Sbjct: 286 DSNDNIASF 294
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT+M+ PHV+G+V L++ +
Sbjct: 298 QPEVSAPGVDILSTY-------PDDSYET------LMGTAMATPHVSGVVALIQAAY 341
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTV 351
D +VIS SLG A + + I +++A GIV VAA+GN G S P ++ V
Sbjct: 226 DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAV 282
Query: 352 GASTTDREFTSY 363
GA ++ S+
Sbjct: 283 GAIDSNDNIASF 294
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT+M+ PHV+G+V L++ +
Sbjct: 295 QPEVSAPGVDILSTY-------PDDSYET------LMGTAMATPHVSGVVALIQAAY 338
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTV 351
D +VIS SLG A + + I +++A GIV VAA+GN G S P ++ V
Sbjct: 223 DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAV 279
Query: 352 GASTTDREFTSY 363
GA ++ S+
Sbjct: 280 GAIDSNDNIASF 291
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT M+ PHV+G+V L++ +
Sbjct: 218 QPEVSAPGVDILSTY-------PDDSYET------LMGTXMATPHVSGVVALIQAAY 261
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTV 351
D +VIS SLG A + + I +++A GIV VAA+GN G S P ++ V
Sbjct: 146 DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAV 202
Query: 352 GASTTDREFTSY 363
GA ++ S+
Sbjct: 203 GAIDSNDNIASF 214
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 14/76 (18%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRI--PYIMMSGTSMSCPHVAGIVGLV----KTL 581
D+ APG DI++ D +R + Y M+GTSM+ PHV+G+ LV ++
Sbjct: 245 DLAAPGQDILSTV--------DSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 582 HPDWSPAAIKSAIMTT 597
+ + +PA +K +++T
Sbjct: 297 NKNLTPAELKDVLVST 312
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 13/57 (22%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH 582
+P+V+APGVDI++ + PD++++ + GT M+ PHV+G+V L++ +
Sbjct: 218 QPEVSAPGVDILSTY-------PDDSYET------LMGTCMATPHVSGVVALIQAAY 261
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTV 351
D +VIS SLG A + + I +++A GIV VAA+GN G S P ++ V
Sbjct: 146 DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAV 202
Query: 352 GASTTDREFTSY 363
GA ++ S+
Sbjct: 203 GAIDSNDNIASF 214
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 14/76 (18%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRI--PYIMMSGTSMSCPHVAGIVGLV----KTL 581
D+ APG DI++ D +R + Y M+GTSM+ PHV+G+ LV ++
Sbjct: 245 DLAAPGQDILSTV--------DSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 582 HPDWSPAAIKSAIMTT 597
+ + +PA +K +++T
Sbjct: 297 NKNLTPAELKDVLVST 312
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 14/76 (18%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRI--PYIMMSGTSMSCPHVAGIVGLV----KTL 581
D+ APG DI++ D +R + Y M+GTSM+ PHV+G+ LV ++
Sbjct: 245 DLAAPGQDILSTV--------DSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 582 HPDWSPAAIKSAIMTT 597
+ + +PA +K +++T
Sbjct: 297 NKNLTPAELKDVLVST 312
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 28/105 (26%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
+V APGV + + + P T Y ++GTSM+ PHVAG L+ + +P S
Sbjct: 196 EVMAPGVSVYSTY-------PSNT------YTSLNGTSMASPHVAGAAALILSKYPTLSA 242
Query: 588 AAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSA 632
+ +++ + +TA N G+ F YG G +N +A
Sbjct: 243 SQVRNRLSSTAT------------NLGDS---FYYGKGLINVEAA 272
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 255 GGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGS-IAREHLKNTI 313
G +P + A KV N + S + + I+S + A +G+DVI+ SLG LK +
Sbjct: 82 GVAPNVSLYAIKVL---NSSGSGSYSAIVSGIEWATQNGLDVINMSLGGPSGSTALKQAV 138
Query: 314 AIGSFHAMMNGIVSVAAAGNSGPDDGSVENVA-----PWILTVGASTTDREFTSYVTLGN 368
A +GIV VAAAGNSG + GS + ++ VGA +++ S+ ++G+
Sbjct: 139 D----KAYASGIVVVAAAGNSG-NSGSQNTIGYPAKYDSVIAVGAVDSNKNRASFSSVGS 193
Query: 369 KMVIKGASVS 378
++ + VS
Sbjct: 194 ELEVMAPGVS 203
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 13/53 (24%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT 580
DV APGVDI++ T R Y MSGTSM+ PHVAG+ L+ +
Sbjct: 202 DVVAPGVDIVSTIT-----------GNRYAY--MSGTSMASPHVAGLAALLAS 241
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 255 GGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAR-EHLKNTI 313
G +P R+ A + + N S +DI A A G +VI+ SLG L+N +
Sbjct: 92 GMAPNTRILAVRAL---DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAV 148
Query: 314 AIGSFHAMMNGIVSVAAAGNSGP----DDGSVENVAPWILTVGASTTDREFTSYVTLG 367
+A G V VAAAGN+G + S ENV + VGA S+ G
Sbjct: 149 N----YAWNKGSVVVAAAGNNGSSTTFEPASYENV----IAVGAVDQYDRLASFSNYG 198
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 28/105 (26%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
+V APG + + + P T Y ++GT M+ PHVAG L+ + HP+ S
Sbjct: 196 EVMAPGAGVYSTY-------PTNT------YATLNGTXMASPHVAGAAALILSKHPNLSA 242
Query: 588 AAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSA 632
+ +++ + +TA SS F YG G +N +A
Sbjct: 243 SQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 272
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 561 MSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAE 601
+SGTSM+ PHVAG+ L +P+ SPA + + + T A A+
Sbjct: 220 ISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 561 MSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTA 598
++GTSM+ PHVAG+ L +P +PA++ SAI+ A
Sbjct: 218 LNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
DV APG I + + P T Y +SGTSM+ PHVAG+ GL+ + S
Sbjct: 201 DVAAPGSSIYSTY-------PTST------YASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 588 AAIKSAIMTTA 598
+ I++AI TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 529 VTAPGVDIIAAFTEASGPSPD----ETHKRRIP------YIMMSGTSMSCPHVAGIVGLV 578
V APGV I++ P D E H +P Y GTSM+ PHV G+V ++
Sbjct: 340 VGAPGVTILSTV-----PGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVL 394
Query: 579 KTLHPDWSPAAIKSAIMTTA 598
P+ P I+ + TA
Sbjct: 395 LQKFPNAKPWQIRKLLENTA 414
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ PG DI++ + S S +SGTSM+ PHVAG+ + TL +
Sbjct: 200 DIFGPGTDILSTWIGGSTRS-------------ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 588 AAIKSAIMTTARAEDSSNRPI 608
+A + I TA D SN P
Sbjct: 247 SACR-YIADTANKGDLSNIPF 266
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
DV APG I + + P T Y +SGTSM+ PHVAG+ GL+ + S
Sbjct: 201 DVAAPGSWIYSTY-------PTST------YASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 588 AAIKSAIMTTA 598
+ I++AI TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 65/149 (43%), Gaps = 25/149 (16%)
Query: 502 NTRPS--------RMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDET-- 551
N RPS +A F+SRGP KPDV APG I++A S +PD +
Sbjct: 187 NLRPSFGSYADNINHVAQFSSRGP--TKDGRIKPDVMAPGTFILSA---RSSLAPDSSFW 241
Query: 552 --HKRRIPYIMMSGTSMSCPHVAGIVG-----LVKTLHPDWSPAAIKSAIMTTARAEDSS 604
H + Y GTS + P VAG V VK P+ +K+A++ A A+
Sbjct: 242 ANHDSK--YAYXGGTSXATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA-ADIGL 298
Query: 605 NRPILDQNTGEKATPFAYGAGHVNPNSAL 633
P +Q G + +VN +S+L
Sbjct: 299 GYPNGNQGWGRVTLDKSLNVAYVNESSSL 327
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 560 MMSGTSMSCPHVAGIVGL----VKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGE 615
+ +GTS + PHVAG V L +K + ++SP +IK AI TA + +D
Sbjct: 457 LXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTA-----TKLGYVD----- 506
Query: 616 KATPFAYGAGHVNPNSALD 634
PFA G G +N A +
Sbjct: 507 ---PFAQGHGLLNVEKAFE 522
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD 584
D+ APGV I + + ++ Y +SGT+M+ PHVAG + L+ L D
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD 584
D+ APGV I + + ++ Y +SGT+M+ PHVAG + L+ L D
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD 584
D+ APGV I + + ++ Y +SGT+M+ PHVAG + L+ L D
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 22/121 (18%)
Query: 509 MAFFTSRGPNMI--DPAIFKPDV--TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGT 564
+A F+SRG D I K DV +APG + + + + Y +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGG-------------YATISGT 248
Query: 565 SMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGA 624
SM+ PH AG+ + P S ++ + T A D IL N+ A G
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND-----ILSGNSAGSGDDIASGF 303
Query: 625 G 625
G
Sbjct: 304 G 304
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD 584
D+ APGV I + + ++ Y +SGT+M+ PHVAG + L+ L D
Sbjct: 208 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAED 251
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ PG I++ + S S +SGTSM+ PHVAG+ + TL +
Sbjct: 200 DIFGPGTSILSTWIGGSTRS-------------ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 588 AAIKSAIMTTARAEDSSNRPI 608
+A + I TA D SN P
Sbjct: 247 SACR-YIADTANKGDLSNIPF 266
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ PG I++ + S S +SGTSM+ PHVAG+ + TL +
Sbjct: 200 DIFGPGTSILSTWIGGSTRS-------------ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 588 AAIKSAIMTTARAEDSSNRPI 608
+A + I TA D SN P
Sbjct: 247 SACR-YIADTANKGDLSNIPF 266
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 255 GGSPKARVAAYKVCWKPNE--NDSCASADILSAYDLAIHDGVD-VISASLGSIAREHLKN 311
G +P A + AYKV +D A+A I A D A G +IS SLGS A L
Sbjct: 92 GVAPDADLWAYKVLLDSGSGYSDDIAAA-IRHAADQATATGTKTIISMSLGSSANNSL-- 148
Query: 312 TIAIGSFHAMMNGIVSVAAAGNSGPDDGSV 341
I+ +A G++ VAAAGNSG G++
Sbjct: 149 -ISSAVNYAYSKGVLIVAAAGNSGYSQGTI 177
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 558 YIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAED 602
Y +SGT M+ PHV+G+ + +P S ++S + A++ D
Sbjct: 243 YNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 255 GGSPKARVAAYKVCWKPNE--NDSCASADILSAYDLAIHDGVD-VISASLGSIAREHLKN 311
G +P A + AYKV +D A+A I A D A G +IS SLGS A L
Sbjct: 92 GVAPDADLWAYKVLLDSGSGYSDDIAAA-IRHAADQATATGTKTIISMSLGSSANNSL-- 148
Query: 312 TIAIGSFHAMMNGIVSVAAAGNSGPDDGSV 341
I+ +A G++ VAAAGNSG G++
Sbjct: 149 -ISSAVNYAYSKGVLIVAAAGNSGYSQGTI 177
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 558 YIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAED 602
Y +SGTSM+ PHV+G+ + +P S ++S + A++ D
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 529 VTAPGVDIIAAF-TEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLV--------K 579
+ APG +I++ +GP R Y M +GTSM+ PHV+G+ LV K
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVISAANSIGK 299
Query: 580 TLHP-DWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKA 617
TL P + S +++ R + I+D N A
Sbjct: 300 TLTPSELSDILVRTTSRFNGRLDRGLGSGIVDANAAVNA 338
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 529 VTAPGVDIIAAF-TEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLV--------K 579
+ APG +I++ +GP R Y M +GTSM+ PHV+G+ LV K
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVISAANSIGK 299
Query: 580 TLHP-DWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKA 617
TL P + S +++ R + I+D N A
Sbjct: 300 TLTPSELSDILVRTTSRFNGRLDRGLGSGIVDANAAVNA 338
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 522 PAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYI------MMSGTSMSCPHVAGIV 575
PA+ D+ PG D+ + PS + H +M+GTS + P +G +
Sbjct: 291 PAMVTTDL--PGCDM--GYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAM 346
Query: 576 GLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPIL 609
L+ + +PD S ++ + +A D+ ++P++
Sbjct: 347 ALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVM 380
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 397 ARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD--EKGQWAAQA-GAVGMILVSS 453
AR +VS++ + G + A+ +G+ ++ A D E WA G V + V S
Sbjct: 124 ARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVS 183
Query: 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTA 492
KE + V +P H NYTD E + + +TQ P +
Sbjct: 184 KEVTRVIDTGVFPVPAEHGNYTDPE-LTGPLRTTQKPIS 221
>pdb|1ZVJ|A Chain A, Structure Of Kumamolisin-As Mutant, D164n
Length = 364
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 36/143 (25%)
Query: 257 SPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGV---DVISASLGSIAREHLKNTI 313
+P A+ A Y + PN + A L A AIHD V+S S G I
Sbjct: 90 APGAKFAVY---FAPNTD-----AGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAI 141
Query: 314 AI---GSFHAMMNGIVSVAAAGNSGPDDGSVENV--------APWILTVGASTTDREFTS 362
A A G+ +AAAGNSG DG + + +P++L G
Sbjct: 142 AAMNRAFLDAAALGVTVLAAAGNSGSTDGEQDGLYHVDFPAASPYVLACG---------- 191
Query: 363 YVTLGNKMVIKGASVSQKGLLND 385
G ++V G ++Q+ + ND
Sbjct: 192 ----GTRLVASGGRIAQETVWND 210
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 397 ARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD--EKGQWAAQA-GAVGMILVSS 453
AR +VS++ + G + A+ +G+ ++ A D E WA G V + V S
Sbjct: 124 ARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVS 183
Query: 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTA 492
KE + V +P H NYTD E + + +TQ P +
Sbjct: 184 KEVTRVIDTGVFPVPAEHGNYTDPE-LTGPLRTTQKPIS 221
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 397 ARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD--EKGQWAAQA-GAVGMILVSS 453
AR +VS++ + G + A+ +G+ ++ A D E WA G V + V S
Sbjct: 124 ARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVS 183
Query: 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTA 492
KE + V +P H NYTD E + + +TQ P +
Sbjct: 184 KEVTRVIDTGVFPVPAEHGNYTDPE-LTGPLRTTQKPIS 221
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 397 ARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD--EKGQWAAQA-GAVGMILVSS 453
AR +VS++ + G + A+ +G+ ++ A D E WA G V + V S
Sbjct: 122 ARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVS 181
Query: 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTA 492
KE + V +P H NYTD E + + +TQ P +
Sbjct: 182 KEVTRVIDTGVFPVPAEHGNYTDPE-LTGPLRTTQKPIS 219
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 397 ARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD--EKGQWAAQA-GAVGMILVSS 453
AR +VS++ + G + A+ +G+ ++ A D E WA G V + V S
Sbjct: 124 ARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVS 183
Query: 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTA 492
KE + V +P H NYTD E + + +TQ P +
Sbjct: 184 KEVTRVIDTGVFPVPAEHGNYTDPE-LTGPLRTTQKPIS 221
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 397 ARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD--EKGQWAAQA-GAVGMILVSS 453
AR +VS++ + G + A+ +G+ ++ A D E WA G V + V S
Sbjct: 124 ARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVS 183
Query: 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTA 492
KE + V +P H NYTD E + + +TQ P +
Sbjct: 184 KEVTRVIDTGVFPVPAEHGNYTDPE-LTGPLRTTQKPIS 221
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 397 ARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD--EKGQWAAQA-GAVGMILVSS 453
AR +VS++ + G + A+ +G+ ++ A D E WA G V + V S
Sbjct: 124 ARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVS 183
Query: 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTA 492
KE + V +P H NYTD E + + +TQ P +
Sbjct: 184 KEVTRVIDTGVFPVPAEHGNYTDPE-LTGPLRTTQKPIS 221
>pdb|1ZVK|A Chain A, Structure Of Double Mutant, D164n, E78h Of Kumamolisin-as
pdb|1ZVK|B Chain B, Structure Of Double Mutant, D164n, E78h Of Kumamolisin-as
Length = 358
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 36/143 (25%)
Query: 257 SPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGV---DVISASLGSIAREHLKNTI 313
+P A+ A Y + PN + A L A AIHD V+S S G I
Sbjct: 90 APGAKFAVY---FAPNTD-----AGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAI 141
Query: 314 AI---GSFHAMMNGIVSVAAAGNSGPDDGSVENV--------APWILTVGASTTDREFTS 362
A A G+ +AAAGNSG DG + + +P++L G
Sbjct: 142 AAMNRAFLDAAALGVTVLAAAGNSGSTDGEQDGLYHVDFPAASPYVLACG---------- 191
Query: 363 YVTLGNKMVIKGASVSQKGLLND 385
G ++V G ++Q+ + ND
Sbjct: 192 ----GTRLVASGGRIAQETVWND 210
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 397 ARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD--EKGQWAAQA-GAVGMILVSS 453
AR +VS++ + G + A+ +G+ ++ A D E WA G V + V S
Sbjct: 124 ARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVS 183
Query: 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTA 492
KE + V +P H NYTD E + + +TQ P +
Sbjct: 184 KEVTRVIDTGVFPVPAEHGNYTDPE-LTGPLRTTQKPIS 221
>pdb|1SIO|A Chain A, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SIO|B Chain B, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SIO|C Chain C, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SN7|A Chain A, Kumamolisin-As, Apoenzyme
Length = 364
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 36/143 (25%)
Query: 257 SPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGV---DVISASLGSIAREHLKNTI 313
+P A+ A Y + PN + A L A AIHD V+S S G I
Sbjct: 90 APGAKFAVY---FAPNTD-----AGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAI 141
Query: 314 AI---GSFHAMMNGIVSVAAAGNSGPDDGSVENV--------APWILTVGASTTDREFTS 362
A A G+ +AAAG+SG DG + + +P++L G
Sbjct: 142 AAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACG---------- 191
Query: 363 YVTLGNKMVIKGASVSQKGLLND 385
G ++V G ++Q+ + ND
Sbjct: 192 ----GTRLVASGGRIAQETVWND 210
>pdb|1SIU|A Chain A, Kumamolisin-As E78h Mutant
Length = 364
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 36/143 (25%)
Query: 257 SPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGV---DVISASLGSIAREHLKNTI 313
+P A+ A Y + PN + A L A AIHD V+S S G I
Sbjct: 90 APGAKFAVY---FAPNTD-----AGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAI 141
Query: 314 AI---GSFHAMMNGIVSVAAAGNSGPDDGSVENV--------APWILTVGASTTDREFTS 362
A A G+ +AAAG+SG DG + + +P++L G
Sbjct: 142 AAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACG---------- 191
Query: 363 YVTLGNKMVIKGASVSQKGLLND 385
G ++V G ++Q+ + ND
Sbjct: 192 ----GTRLVASGGRIAQETVWND 210
>pdb|1APY|A Chain A, Human Aspartylglucosaminidase
pdb|1APY|C Chain C, Human Aspartylglucosaminidase
pdb|1APZ|A Chain A, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|C Chain C, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 162
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 22/128 (17%)
Query: 545 GPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSS 604
G SPDE + + ++M GT+M VG V L IK+AI + + +
Sbjct: 53 GGSPDELGETTLDAMIMDGTTMD-------VGAVGDLR------RIKNAIGVARKVLEHT 99
Query: 605 NRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFT 664
+L GE AT FA G +N + + D+L C Y ++ I
Sbjct: 100 THTLL---VGESATTFAQSMGFINEDLSTSASQAL---HSDWLARNCQPNYWRNVI---P 150
Query: 665 APKKFTCP 672
P K+ P
Sbjct: 151 DPSKYCGP 158
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 281 DILSAYDLAIHDGVDVISASLGSI-----AREHLKNTIAIGSFHAMMNGIVSVAAAGNSG 335
D+ + A++ G +I+ S G + A L+N +++ N ++ VAAAGN+G
Sbjct: 103 DLARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSL----CRQNNVLLVAAAGNNG 158
Query: 336 PDDGSVENVAPWILTVGA 353
D V P +L VGA
Sbjct: 159 CDCLHVPAALPAVLAVGA 176
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 245 VYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSI 304
++G + G +P+ R V ++ D+ + A++ G +I+ S G +
Sbjct: 78 IFGQPETSVPGIAPQCR--GLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGEL 135
Query: 305 -----AREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGA 353
A L+N +++ N ++ VAAAGN+G D V P +L VGA
Sbjct: 136 TDFGEADGWLENAVSL----CRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 185
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 281 DILSAYDLAIHDGVDVISASLGSI-----AREHLKNTIAIGSFHAMMNGIVSVAAAGNSG 335
D+ + A++ G +I+ S G + A L+N +++ N ++ VAAAGN+G
Sbjct: 93 DLARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSL----CRQNNVLLVAAAGNNG 148
Query: 336 PDDGSVENVAPWILTVGA 353
D V P +L VGA
Sbjct: 149 CDCLHVPAALPAVLAVGA 166
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 244 SVYGSGYGTAKGGSPKARV--AAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASL 301
++ G + G +P RV + N +D + ++ A DLA+ G ++I +
Sbjct: 116 TIVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAF 175
Query: 302 GSIAREHLKNTIAIGSFHAMM-NGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTD 357
+ I + + N ++ V+ GN+ + + V P L VGA+ D
Sbjct: 176 CRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD 232
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 244 SVYGSGYGTAKGGSPKARV--AAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASL 301
++ G + G +P RV + N +D + ++ A DLA+ G ++I +
Sbjct: 134 TIVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAF 193
Query: 302 GSIAREHLKNTIAIGSFHAMM-NGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTD 357
+ I + + N ++ V+ GN+ + + V P L VGA+ D
Sbjct: 194 CRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD 250
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 244 SVYGSGYGTAKGGSPKARV--AAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASL 301
++ G + G +P RV + N +D + ++ A DLA+ G ++I +
Sbjct: 134 TIVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAF 193
Query: 302 GSIAREHLKNTIAIGSFHAMM-NGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTD 357
+ I + + N ++ V+ GN+ + + V P L VGA+ D
Sbjct: 194 CRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD 250
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 13/50 (26%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGL 577
D+ APG I +A+ + Y +SGTSM+ PHVAG+ L
Sbjct: 196 DLFAPGSQIKSAWYDGG-------------YKTISGTSMATPHVAGVAAL 232
>pdb|3ST1|A Chain A, Crystal Structure Of Necrosis And Ethylene Inducing
Protein 2 From The Causal Agent Of Cocoa's Witches Broom
Disease
Length = 214
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 58 FLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAK-QLENHPGVVSV---FPDEGAKL 113
FL S ++ +S + ++ N GA +++ H K Q P + S D+G L
Sbjct: 110 FLNSDTQQIDGVAASAHGKWRKYPNPGGANIDDTHVKLQYSAEPVINSHALDLTDKGGDL 169
Query: 114 HTTRSWDFLGLEKDNFIPPDSAWKKARFG-EDVIIANVDSGVW 155
T SW+ +G + I S W A D +I + SG W
Sbjct: 170 PTLASWEGMGADARAAINERSHWGDANPPIADSLIGSSLSGAW 212
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 245 VYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSI 304
++G G +P+ R V +E+ + D+ A + A+++G ++I+ S G +
Sbjct: 72 IFGQHDSPVTGIAPQCRGLIVPV--FADESLKLSQLDLSRAIEQAVNNGANIINVSAGQL 129
Query: 305 -----AREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGA 353
A L+ I + N ++ +AA GN G + V P +L VGA
Sbjct: 130 TDAGEADTWLEKAIQL----CQENNVLLIAATGNDGCECLHVPASLPTVLAVGA 179
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 21/79 (26%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH--- 582
K + APG DI+ A K I +SGTS + P V+G+ L+ +L
Sbjct: 198 KQGILAPGKDILGA-------------KPNGGTIRLSGTSFATPIVSGVAALLLSLQIKR 244
Query: 583 ---PDWSPAAIKSAIMTTA 598
PD P +K+A++ +A
Sbjct: 245 GEKPD--PQKVKNALLASA 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,990,680
Number of Sequences: 62578
Number of extensions: 1031835
Number of successful extensions: 1955
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1701
Number of HSP's gapped (non-prelim): 210
length of query: 767
length of database: 14,973,337
effective HSP length: 106
effective length of query: 661
effective length of database: 8,340,069
effective search space: 5512785609
effective search space used: 5512785609
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)