Query 040503
Match_columns 767
No_of_seqs 450 out of 3130
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.4E-52 3E-57 449.8 29.6 306 111-599 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 5.1E-50 1.1E-54 445.5 22.4 293 133-639 304-618 (639)
3 cd07478 Peptidases_S8_CspA-lik 100.0 6.1E-49 1.3E-53 438.4 26.7 414 140-625 1-455 (455)
4 cd07497 Peptidases_S8_14 Pepti 100.0 9.1E-49 2E-53 416.3 23.7 287 142-598 1-311 (311)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 1.2E-48 2.6E-53 406.6 24.1 243 136-601 1-253 (255)
6 cd05562 Peptidases_S53_like Pe 100.0 2.5E-48 5.4E-53 407.1 23.5 270 139-634 1-274 (275)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 1.5E-47 3.4E-52 418.4 27.8 313 134-634 1-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.2E-46 2.5E-51 405.1 26.2 294 133-637 3-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 5.1E-46 1.1E-50 388.6 25.5 248 135-603 2-254 (267)
10 cd05561 Peptidases_S8_4 Peptid 100.0 1.4E-45 3.1E-50 380.1 24.4 238 145-625 1-239 (239)
11 cd07474 Peptidases_S8_subtilis 100.0 4.5E-45 9.7E-50 390.3 28.1 292 142-632 1-295 (295)
12 cd07483 Peptidases_S8_Subtilis 100.0 5.2E-45 1.1E-49 387.0 24.4 271 143-599 1-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 9E-45 1.9E-49 380.5 24.0 245 144-599 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 1.9E-44 4.2E-49 378.5 24.1 247 142-599 1-264 (264)
15 KOG1153 Subtilisin-related pro 100.0 8.2E-45 1.8E-49 375.9 20.6 334 25-601 78-463 (501)
16 cd07485 Peptidases_S8_Fervidol 100.0 3.6E-44 7.9E-49 378.3 25.0 264 134-597 1-273 (273)
17 cd04857 Peptidases_S8_Tripepti 100.0 1.3E-43 2.7E-48 383.4 27.2 222 222-600 182-411 (412)
18 cd07487 Peptidases_S8_1 Peptid 100.0 2.7E-43 5.8E-48 370.5 25.7 257 142-599 1-264 (264)
19 cd04847 Peptidases_S8_Subtilis 100.0 4.7E-43 1E-47 373.3 20.9 266 146-599 2-291 (291)
20 cd04077 Peptidases_S8_PCSK9_Pr 100.0 2.7E-42 5.8E-47 360.7 26.0 233 135-600 17-255 (255)
21 cd07490 Peptidases_S8_6 Peptid 100.0 2.6E-42 5.7E-47 360.8 24.8 253 144-599 1-254 (254)
22 cd07484 Peptidases_S8_Thermita 100.0 6.1E-42 1.3E-46 359.2 25.4 241 133-601 19-259 (260)
23 cd07496 Peptidases_S8_13 Pepti 100.0 7.4E-42 1.6E-46 363.0 25.1 207 220-597 66-285 (285)
24 cd07494 Peptidases_S8_10 Pepti 100.0 1.8E-41 4E-46 359.7 23.7 250 133-602 11-286 (298)
25 cd07498 Peptidases_S8_15 Pepti 100.0 1.6E-41 3.5E-46 352.2 22.5 240 145-597 1-242 (242)
26 cd04842 Peptidases_S8_Kp43_pro 100.0 2.8E-41 6.1E-46 360.7 24.7 279 138-599 2-293 (293)
27 cd07480 Peptidases_S8_12 Pepti 100.0 5.7E-41 1.2E-45 358.0 24.2 265 137-630 2-296 (297)
28 cd04843 Peptidases_S8_11 Pepti 100.0 4.4E-41 9.5E-46 352.7 21.5 244 133-599 5-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 2.4E-40 5.3E-45 346.9 25.5 250 143-599 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 1.8E-40 3.8E-45 341.5 23.9 227 144-597 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 2.1E-40 4.5E-45 342.1 19.6 161 142-356 2-171 (247)
32 cd07492 Peptidases_S8_8 Peptid 100.0 1.9E-39 4.1E-44 332.0 23.0 222 144-599 1-222 (222)
33 PF00082 Peptidase_S8: Subtila 100.0 3.3E-40 7.2E-45 350.4 16.1 274 146-634 1-282 (282)
34 cd07482 Peptidases_S8_Lantibio 100.0 2.4E-39 5.3E-44 345.9 22.7 208 219-597 47-294 (294)
35 cd04059 Peptidases_S8_Protein_ 100.0 1.3E-39 2.9E-44 348.3 19.6 247 133-599 29-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 2.6E-38 5.6E-43 333.0 22.4 244 141-599 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.2E-36 2.7E-41 322.7 14.2 360 27-635 49-466 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 2.2E-33 4.8E-38 288.7 15.9 192 221-597 33-246 (247)
39 cd00306 Peptidases_S8_S53 Pept 100.0 5.1E-31 1.1E-35 272.1 24.1 197 220-597 39-241 (241)
40 KOG1114 Tripeptidyl peptidase 100.0 3E-31 6.5E-36 293.8 15.0 241 224-634 309-557 (1304)
41 COG1404 AprE Subtilisin-like s 99.9 1.5E-23 3.3E-28 240.2 23.1 249 133-599 130-397 (508)
42 KOG3526 Subtilisin-like propro 99.9 4.4E-22 9.6E-27 201.7 12.0 154 133-337 151-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 2.1E-17 4.5E-22 180.7 15.3 101 251-358 81-198 (361)
44 cd02120 PA_subtilisin_like PA_ 99.2 3.8E-10 8.3E-15 104.5 12.4 122 364-493 2-125 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.1 3.1E-10 6.8E-15 107.3 11.1 106 409-519 35-142 (143)
46 PF05922 Inhibitor_I9: Peptida 98.9 3.7E-09 8E-14 89.9 6.6 78 29-114 1-82 (82)
47 KOG3525 Subtilisin-like propro 98.5 6E-07 1.3E-11 99.4 12.8 156 133-338 23-188 (431)
48 cd04816 PA_SaNapH_like PA_SaNa 98.5 5.6E-07 1.2E-11 82.7 9.0 87 407-493 29-121 (122)
49 cd04818 PA_subtilisin_1 PA_sub 98.5 8.9E-07 1.9E-11 80.9 9.7 87 406-493 26-117 (118)
50 cd02122 PA_GRAIL_like PA _GRAI 98.4 1E-06 2.2E-11 82.2 9.8 89 406-494 43-138 (138)
51 PF02225 PA: PA domain; Inter 98.4 3.5E-07 7.5E-12 81.0 6.1 79 406-484 18-101 (101)
52 cd02129 PA_hSPPL_like PA_hSPPL 98.4 1.6E-06 3.4E-11 78.2 9.6 81 406-486 29-114 (120)
53 cd02127 PA_hPAP21_like PA_hPAP 98.4 2.5E-06 5.4E-11 77.4 10.0 87 407-494 21-116 (118)
54 cd00538 PA PA: Protease-associ 98.4 1.6E-06 3.5E-11 80.0 9.1 87 406-492 29-124 (126)
55 COG4934 Predicted protease [Po 98.3 1.2E-05 2.7E-10 95.7 16.5 95 252-353 287-395 (1174)
56 cd02126 PA_EDEM3_like PA_EDEM3 98.3 3.8E-06 8.1E-11 77.4 9.2 85 407-492 27-124 (126)
57 cd02130 PA_ScAPY_like PA_ScAPY 98.3 4.3E-06 9.3E-11 76.8 9.2 86 407-493 31-121 (122)
58 cd02125 PA_VSR PA_VSR: Proteas 98.2 1.4E-05 3E-10 73.5 10.7 87 407-493 22-126 (127)
59 cd04817 PA_VapT_like PA_VapT_l 98.2 7.8E-06 1.7E-10 76.0 8.5 74 414-487 49-134 (139)
60 cd02132 PA_GO-like PA_GO-like: 98.1 1.1E-05 2.3E-10 75.8 9.3 83 407-492 48-137 (139)
61 cd02124 PA_PoS1_like PA_PoS1_l 98.1 1.6E-05 3.6E-10 73.3 9.5 87 406-493 40-128 (129)
62 cd04813 PA_1 PA_1: Protease-as 98.1 1.8E-05 4E-10 71.6 8.6 80 406-487 26-112 (117)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.0 3.9E-05 8.5E-10 73.2 9.3 83 407-489 50-142 (153)
64 cd04819 PA_2 PA_2: Protease-as 97.6 0.00059 1.3E-08 63.1 10.1 74 415-488 38-121 (127)
65 PF06280 DUF1034: Fn3-like dom 97.1 0.0039 8.5E-08 56.2 10.2 78 685-767 1-100 (112)
66 cd04815 PA_M28_2 PA_M28_2: Pro 96.3 0.015 3.3E-07 54.2 7.9 77 416-492 34-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 95.7 0.02 4.4E-07 55.7 6.1 71 417-487 51-156 (183)
68 PF10633 NPCBM_assoc: NPCBM-as 95.2 0.092 2E-06 43.8 7.6 66 692-757 5-71 (78)
69 KOG2442 Uncharacterized conser 94.8 0.1 2.2E-06 57.0 8.4 79 417-495 91-176 (541)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 93.9 0.11 2.3E-06 48.4 5.3 49 407-455 35-96 (137)
71 cd04814 PA_M28_1 PA_M28_1: Pro 93.8 0.11 2.3E-06 48.7 5.3 49 407-455 33-100 (142)
72 cd02131 PA_hNAALADL2_like PA_h 93.2 0.13 2.7E-06 48.2 4.5 38 418-455 37-75 (153)
73 cd04822 PA_M28_1_3 PA_M28_1_3: 92.4 0.25 5.3E-06 46.8 5.5 50 407-456 33-101 (151)
74 cd02121 PA_GCPII_like PA_GCPII 91.7 0.3 6.4E-06 49.3 5.5 39 417-455 67-106 (220)
75 PF14874 PapD-like: Flagellar- 89.3 3.8 8.2E-05 35.8 9.9 54 692-746 20-73 (102)
76 PF11614 FixG_C: IG-like fold 88.1 2.8 6.1E-05 37.9 8.5 53 693-746 32-84 (118)
77 KOG3920 Uncharacterized conser 87.6 0.73 1.6E-05 42.8 4.1 88 406-494 73-171 (193)
78 KOG4628 Predicted E3 ubiquitin 87.0 1.7 3.6E-05 46.6 7.0 81 407-487 62-150 (348)
79 COG1470 Predicted membrane pro 83.6 3.6 7.8E-05 45.4 7.6 65 692-756 397-462 (513)
80 KOG1114 Tripeptidyl peptidase 81.8 0.97 2.1E-05 53.4 2.7 24 139-162 77-100 (1304)
81 PF00345 PapD_N: Pili and flag 81.4 10 0.00023 34.3 9.0 64 692-758 14-85 (122)
82 PF06030 DUF916: Bacterial pro 79.5 24 0.00052 32.2 10.5 69 692-766 27-119 (121)
83 cd04821 PA_M28_1_2 PA_M28_1_2: 78.4 3.5 7.6E-05 39.4 4.9 41 414-454 42-102 (157)
84 TIGR02745 ccoG_rdxA_fixG cytoc 67.4 28 0.00061 39.1 9.4 54 692-746 346-399 (434)
85 PF00635 Motile_Sperm: MSP (Ma 65.7 35 0.00077 29.9 8.2 52 692-746 18-69 (109)
86 COG1470 Predicted membrane pro 64.2 34 0.00073 38.1 8.8 65 692-757 284-354 (513)
87 PF07172 GRP: Glycine rich pro 58.5 5.1 0.00011 34.8 1.2 22 1-22 1-23 (95)
88 smart00635 BID_2 Bacterial Ig- 53.1 35 0.00076 28.4 5.5 25 721-746 4-28 (81)
89 PF05506 DUF756: Domain of unk 52.7 1.1E+02 0.0024 25.9 8.6 57 685-746 11-67 (89)
90 PF07610 DUF1573: Protein of u 50.4 49 0.0011 24.2 5.2 44 698-744 2-45 (45)
91 PF02845 CUE: CUE domain; Int 39.0 31 0.00068 24.7 2.6 24 575-598 5-28 (42)
92 PF07705 CARDB: CARDB; InterP 38.9 1.6E+02 0.0036 24.8 7.8 51 692-746 19-71 (101)
93 PF00927 Transglut_C: Transglu 38.6 2.4E+02 0.0052 24.6 8.9 54 691-746 14-76 (107)
94 PF12690 BsuPI: Intracellular 37.2 1.7E+02 0.0037 24.5 7.1 52 694-746 2-70 (82)
95 PF07718 Coatamer_beta_C: Coat 35.3 3.6E+02 0.0078 25.2 9.4 68 693-766 70-138 (140)
96 smart00237 Calx_beta Domains i 35.1 2.5E+02 0.0055 23.7 8.1 61 683-746 9-75 (90)
97 PRK15098 beta-D-glucoside gluc 31.2 1.2E+02 0.0027 36.9 7.5 52 692-746 667-727 (765)
98 PRK15019 CsdA-binding activato 30.6 47 0.001 31.4 3.0 33 559-592 77-109 (147)
99 TIGR03391 FeS_syn_CsdE cystein 29.1 52 0.0011 30.7 3.0 34 559-593 72-105 (138)
100 PRK09918 putative fimbrial cha 28.9 2.5E+02 0.0055 28.6 8.3 63 692-758 38-105 (230)
101 PF13940 Ldr_toxin: Toxin Ldr, 28.3 42 0.00092 22.8 1.6 13 566-578 14-26 (35)
102 TIGR01451 B_ant_repeat conserv 26.9 2.4E+02 0.0052 21.4 5.8 39 691-731 11-50 (53)
103 smart00546 CUE Domain that may 26.5 95 0.0021 22.3 3.4 24 574-597 5-28 (43)
104 PRK09296 cysteine desufuration 25.7 64 0.0014 30.1 3.0 33 559-592 67-99 (138)
105 PF04255 DUF433: Protein of un 25.0 61 0.0013 25.0 2.3 39 557-595 10-54 (56)
106 PF08260 Kinin: Insect kinin p 24.9 33 0.00072 15.6 0.4 6 511-516 3-8 (8)
107 PF02657 SufE: Fe-S metabolism 24.2 76 0.0016 29.1 3.1 34 559-593 58-91 (125)
108 PF05984 Cytomega_UL20A: Cytom 24.1 90 0.002 25.9 3.1 23 1-23 1-23 (100)
109 COG2166 sufE Cysteine desulfur 23.1 71 0.0015 29.9 2.7 32 560-592 73-104 (144)
110 cd08523 Reeler_cohesin_like Do 23.0 5.3E+02 0.011 23.6 8.2 19 728-746 74-92 (124)
111 PF03160 Calx-beta: Calx-beta 23.0 3.9E+02 0.0084 22.8 7.4 65 681-746 16-85 (100)
112 PF01345 DUF11: Domain of unkn 22.8 2E+02 0.0042 23.4 5.1 31 692-722 41-72 (76)
113 PF02368 Big_2: Bacterial Ig-l 22.2 57 0.0012 26.8 1.8 25 721-746 4-28 (79)
114 PLN03080 Probable beta-xylosid 21.3 1.5E+02 0.0033 36.2 5.7 53 693-746 685-744 (779)
115 PF05753 TRAP_beta: Translocon 20.5 4.9E+02 0.011 25.5 8.1 54 692-746 38-97 (181)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-52 Score=449.77 Aligned_cols=306 Identities=51% Similarity=0.807 Sum_probs=259.3
Q ss_pred cccCccCCCcccCCccCCCCCCccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCC-CCcccCCc
Q 040503 111 AKLHTTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDN-YKGVSCNK 189 (767)
Q Consensus 111 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-~~~~~~n~ 189 (767)
++++++++++++|++.... ..+|..+.+|+||+|||||||||++||+|.+.+..++...|.+.|..+. ++...|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWG---GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCCC---cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 4688999999999986521 1257789999999999999999999999999888999999999999887 66678999
Q ss_pred ccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeec
Q 040503 190 KLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCW 269 (767)
Q Consensus 190 ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 269 (767)
|+++.++|.++++...+. ....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++
T Consensus 78 ki~g~~~~~~~~~~~~~~-----~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~ 152 (307)
T cd04852 78 KLIGARYFSDGYDAYGGF-----NSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW 152 (307)
T ss_pred eEEEEEEcccchhhccCc-----ccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec
Confidence 999999998876554220 023335678899999999999999998877766777777889999999999999998
Q ss_pred CCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceE
Q 040503 270 KPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWIL 349 (767)
Q Consensus 270 ~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vi 349 (767)
..+ .+..+++++||++|++++++|||||||........+.+..++..+.++|++||+||||+|+......+..||++
T Consensus 153 ~~~---~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi 229 (307)
T cd04852 153 PDG---GCFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVT 229 (307)
T ss_pred CCC---CccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeE
Confidence 744 48899999999999999999999999987544566788888889999999999999999988777888899999
Q ss_pred EeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEec
Q 040503 350 TVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYG 429 (767)
Q Consensus 350 tVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 429 (767)
+|||++
T Consensus 230 ~Vga~~-------------------------------------------------------------------------- 235 (307)
T cd04852 230 TVAAST-------------------------------------------------------------------------- 235 (307)
T ss_pred EEEecc--------------------------------------------------------------------------
Confidence 999721
Q ss_pred CCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCce
Q 040503 430 ARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMM 509 (767)
Q Consensus 430 g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 509 (767)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHH
Q 040503 510 AFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAA 589 (767)
Q Consensus 510 a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ 589 (767)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|
T Consensus 236 ---------------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~ 297 (307)
T cd04852 236 ---------------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAA 297 (307)
T ss_pred ---------------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 467999999999999875311 11122335899999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 040503 590 IKSAIMTTAR 599 (767)
Q Consensus 590 ik~~L~~TA~ 599 (767)
||++|++||+
T Consensus 298 v~~~L~~tA~ 307 (307)
T cd04852 298 IKSALMTTAY 307 (307)
T ss_pred HHHHHHHhcC
Confidence 9999999984
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=5.1e-50 Score=445.48 Aligned_cols=293 Identities=19% Similarity=0.181 Sum_probs=210.1
Q ss_pred ccccc--cCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcc-cCCcccceeEEcccchhhhhccCC
Q 040503 133 DSAWK--KARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGV-SCNKKLIGIRYINQGTIEELRAKN 209 (767)
Q Consensus 133 ~~~~~--~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~-~~n~ki~g~~~~~~~~~~~~~~~~ 209 (767)
+.+|. .+.+|+||+|||||||||++||+|.++- |....+....... .+++..+. ...+|+..+
T Consensus 304 ~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni-------~~n~~el~GrdgiDdD~nG~vd---d~~G~nfVd---- 369 (639)
T PTZ00262 304 DETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNI-------DVNVKELHGRKGIDDDNNGNVD---DEYGANFVN---- 369 (639)
T ss_pred hHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhc-------ccccccccCccccccccCCccc---ccccccccC----
Confidence 34565 3568999999999999999999998641 1110000000000 00110100 011222111
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHh
Q 040503 210 PDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLA 289 (767)
Q Consensus 210 ~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a 289 (767)
....|.|..||||||||||||...++. .+.||||+|+|+++|+++..+ .+..+++++||+||
T Consensus 370 -------~~~~P~D~~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G---~G~~sdI~~AI~yA 431 (639)
T PTZ00262 370 -------NDGGPMDDNYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHK---LGRLGDMFKCFDYC 431 (639)
T ss_pred -------CCCCCCCCCCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCC---CccHHHHHHHHHHH
Confidence 133568899999999999999754322 248999999999999998776 47889999999999
Q ss_pred hhcCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC--------------ccc----CCCceEEe
Q 040503 290 IHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS--------------VEN----VAPWILTV 351 (767)
Q Consensus 290 ~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~~p~vitV 351 (767)
++.|++|||||||+.. ....+..++.+|.++|++||+||||+|+.... ++. ..|++|+|
T Consensus 432 ~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaV 508 (639)
T PTZ00262 432 ISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITV 508 (639)
T ss_pred HHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEE
Confidence 9999999999999763 34567788889999999999999999864211 111 24677888
Q ss_pred ccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCC
Q 040503 352 GASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGAR 431 (767)
Q Consensus 352 gA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 431 (767)
||++.+..
T Consensus 509 GAv~~d~~------------------------------------------------------------------------ 516 (639)
T PTZ00262 509 SNLIKDKN------------------------------------------------------------------------ 516 (639)
T ss_pred eeccCCCC------------------------------------------------------------------------
Confidence 87543210
Q ss_pred chhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceec
Q 040503 432 YGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAF 511 (767)
Q Consensus 432 ~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 511 (767)
.....+.
T Consensus 517 -------------------------------------------------------------------------~~~s~s~ 523 (639)
T PTZ00262 517 -------------------------------------------------------------------------NQYSLSP 523 (639)
T ss_pred -------------------------------------------------------------------------Ccccccc
Confidence 0012345
Q ss_pred ccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHH
Q 040503 512 FTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIK 591 (767)
Q Consensus 512 fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik 591 (767)
||++|.. ++||+|||++|+|+++.+ .|..++|||||||||||+||||++++|+|+++||+
T Consensus 524 ~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~ 583 (639)
T PTZ00262 524 NSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVI 583 (639)
T ss_pred cccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHH
Confidence 6666522 349999999999998763 79999999999999999999999999999999999
Q ss_pred HHHHhccccccCCCCcccCCCCCCCCCCCccCC-CccCccCcCCCCccc
Q 040503 592 SAIMTTARAEDSSNRPILDQNTGEKATPFAYGA-GHVNPNSALDPGLVY 639 (767)
Q Consensus 592 ~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~-G~vd~~~A~~~glv~ 639 (767)
++|++||.++... +..+|| |+||+++|++..+-+
T Consensus 584 ~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 584 RILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999865311 122343 899999999876654
No 3
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=6.1e-49 Score=438.39 Aligned_cols=414 Identities=22% Similarity=0.231 Sum_probs=249.0
Q ss_pred CCCCceEEEEecccCCCCCCCccC-CCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCC
Q 040503 140 RFGEDVIIANVDSGVWPESKSFAD-DGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNL 218 (767)
Q Consensus 140 ~~G~gV~VgVIDtGid~~Hp~f~~-~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (767)
.+|+||+|||||||||+.||+|++ +|.+|+...|++.......+ .....+..+..+..+...... .+.+.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-----~p~~~ 71 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP----GGYYGGGEYTEEIINAALASD-----NPYDI 71 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC----ccccCceEEeHHHHHHHHhcC-----Ccccc
Confidence 479999999999999999999986 56899999999988765411 111222222221122211111 22234
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCC-------CCCChhHHHHHHHHhhh
Q 040503 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNEN-------DSCASADILSAYDLAIH 291 (767)
Q Consensus 219 ~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~-------~~~~~~~i~~aid~a~~ 291 (767)
....|..||||||||||||+..++ ..+.||||+|+|+++|++...+.. ..+..++++.||+|+++
T Consensus 72 ~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~ 143 (455)
T cd07478 72 VPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYD 143 (455)
T ss_pred CcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHH
Confidence 456799999999999999986432 344899999999999999877521 12678899999999887
Q ss_pred c-----CCcEEEeccCCCC-ccCcccHHHHHHHHHHhC-CCEEEEecCCCCCCCCCcccC-CC-----c-eEEeccccCc
Q 040503 292 D-----GVDVISASLGSIA-REHLKNTIAIGSFHAMMN-GIVSVAAAGNSGPDDGSVENV-AP-----W-ILTVGASTTD 357 (767)
Q Consensus 292 ~-----gvdVIn~SlG~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-~p-----~-vitVgA~~~~ 357 (767)
. .++|||||||... .....+.++.++..+.++ |++||+||||+|....+.... .+ . -+.|+.-.
T Consensus 144 ~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~-- 221 (455)
T cd07478 144 KALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE-- 221 (455)
T ss_pred HHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--
Confidence 4 4789999999873 345667888888887765 999999999999765554431 00 0 13333311
Q ss_pred ceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCC-chh--
Q 040503 358 REFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGAR-YGD-- 434 (767)
Q Consensus 358 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~-~~~-- 434 (767)
..+.-.++......+.-.-..+. ....+.+... ........+ .....++.+..+.. ...
T Consensus 222 ~~~~~eiW~~~~d~~~v~i~sP~-----Ge~~~~i~~~-----------~~~~~~~~~--~~~~t~i~v~y~~~~~~~g~ 283 (455)
T cd07478 222 KGFNLEIWGDFPDRFSVSIISPS-----GESSGRINPG-----------IGGSESYKF--VFEGTTVYVYYYLPEPYTGD 283 (455)
T ss_pred cceEEEEecCCCCEEEEEEECCC-----CCccCccCcC-----------CCcceeEEE--EECCeEEEEEEcCCCCCCCC
Confidence 11111122111111100000000 0000000000 000000000 00011111111110 000
Q ss_pred ----HHHHHHHHcCceEEEEeccCCCCccccc-ccccccEEEeehhhHHHHHHHHhcCCCceEEEecCc----eeeccCC
Q 040503 435 ----EKGQWAAQAGAVGMILVSSKESGNKVLN-MVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSK----TEFNTRP 505 (767)
Q Consensus 435 ----~~~~~~~~~G~~g~i~~~~~~~~~~~~~-~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~----~~~~~~~ 505 (767)
...++ ...|-.-+.+..... ... ...|+|...+...+. .++......++++.... ++..+..
T Consensus 284 ~~i~i~~~~-~~~GiW~i~~~~~~~----~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~ 354 (455)
T cd07478 284 QLIFIRFKN-IKPGIWKIRLTGVSI----TDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQ 354 (455)
T ss_pred eEEEEEccC-CCccceEEEEEeccC----CCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeC
Confidence 00000 011111122221110 111 123666554443322 24445555555554332 3444444
Q ss_pred -CCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhC--
Q 040503 506 -SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH-- 582 (767)
Q Consensus 506 -~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-- 582 (767)
.+.++.||||||+. ++++||||+|||++|+++.+.. .|..++|||||||||||++|||+|.+
T Consensus 355 ~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~ 419 (455)
T cd07478 355 NNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIV 419 (455)
T ss_pred CCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchh
Confidence 35699999999998 8999999999999999999863 89999999999999999999999965
Q ss_pred ----CCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccCCC
Q 040503 583 ----PDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAG 625 (767)
Q Consensus 583 ----P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 625 (767)
|.|++++||++|++||+++. ...+++++||||
T Consensus 420 ~~~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 420 RGNDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred ccCCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999998763 234578899998
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.1e-49 Score=416.30 Aligned_cols=287 Identities=26% Similarity=0.255 Sum_probs=191.7
Q ss_pred CCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCC
Q 040503 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTG 221 (767)
Q Consensus 142 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (767)
|+||+|||||||||++||+|.++.. ..|...+. +...+ ..+++... .....+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~~d--------~~~~~------~~g~d~~~----------~~~~~~ 52 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFD--------YKAYL------LPGMDKWG----------GFYVIM 52 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccccC--------cCCCc------cCCcCCCC----------CccCCC
Confidence 8999999999999999999975420 01111000 00011 11111110 012346
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccC-CCcccccCCCCeEEEEEeecCCCCCCCCChhHHHH-------HHHH--hhh
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSG-YGTAKGGSPKARVAAYKVCWKPNENDSCASADILS-------AYDL--AIH 291 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~-------aid~--a~~ 291 (767)
.|.+||||||||||||....+.+.+++. ...+.||||+|+|+.+|++...+ .+....+.. +++| +.+
T Consensus 53 ~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~ 129 (311)
T cd07497 53 YDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD---VIYAWLWTAGFDPVDRKLSWIYTGG 129 (311)
T ss_pred CCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC---cchhhhhhhccchhhhhhhhhhccC
Confidence 7899999999999999864433322221 23568999999999999997543 232333333 3444 346
Q ss_pred cCCcEEEeccCCCCccC-----cccHHHHHHHHH-HhCCCEEEEecCCCCCCCCCcc--cCCCceEEeccccCcceeeee
Q 040503 292 DGVDVISASLGSIAREH-----LKNTIAIGSFHA-MMNGIVSVAAAGNSGPDDGSVE--NVAPWILTVGASTTDREFTSY 363 (767)
Q Consensus 292 ~gvdVIn~SlG~~~~~~-----~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgA~~~~~~~~~~ 363 (767)
++++|||||||.....+ ..+..+..++.+ .++|++||+||||+|+...+.. ..++++|+|||++..+..+
T Consensus 130 ~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~-- 207 (311)
T cd07497 130 PRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRP-- 207 (311)
T ss_pred CCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccc--
Confidence 79999999999863211 112233333332 3899999999999998655544 4578999999986432100
Q ss_pred EEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHc
Q 040503 364 VTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQA 443 (767)
Q Consensus 364 ~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 443 (767)
.+.+.
T Consensus 208 ------------------------~~~~~--------------------------------------------------- 212 (311)
T cd07497 208 ------------------------FYLFG--------------------------------------------------- 212 (311)
T ss_pred ------------------------hhhhc---------------------------------------------------
Confidence 00000
Q ss_pred CceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCC
Q 040503 444 GAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPA 523 (767)
Q Consensus 444 G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 523 (767)
......+.++.||||||+. ++
T Consensus 213 ---------------------------------------------------------~~~~~~~~~~~fSs~Gp~~--~g 233 (311)
T cd07497 213 ---------------------------------------------------------YLPGGSGDVVSWSSRGPSI--AG 233 (311)
T ss_pred ---------------------------------------------------------cccCCCCCccccccCCCCc--cc
Confidence 0001135789999999998 89
Q ss_pred cccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCC------CCCHHHHHHHHHhc
Q 040503 524 IFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHP------DWSPAAIKSAIMTT 597 (767)
Q Consensus 524 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~~sp~~ik~~L~~T 597 (767)
++||||+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++|
T Consensus 234 ~~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~t 310 (311)
T cd07497 234 DPKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMST 310 (311)
T ss_pred CCCCceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhc
Confidence 999999999999999876542100 011224799999999999999999999999886 68999999999999
Q ss_pred c
Q 040503 598 A 598 (767)
Q Consensus 598 A 598 (767)
|
T Consensus 311 A 311 (311)
T cd07497 311 A 311 (311)
T ss_pred C
Confidence 7
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.2e-48 Score=406.56 Aligned_cols=243 Identities=25% Similarity=0.337 Sum_probs=198.4
Q ss_pred cccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCC
Q 040503 136 WKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIP 215 (767)
Q Consensus 136 ~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 215 (767)
|+.+++|+||+|||||||||.+||+|.+. +...+|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~---------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWTN---------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccCC----------------
Confidence 88999999999999999999999999742 00111111
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCc
Q 040503 216 QNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVD 295 (767)
Q Consensus 216 ~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvd 295 (767)
.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ .+..+.++++|+||++++++
T Consensus 38 --~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~~a~~~a~~~~~~ 101 (255)
T cd07479 38 --EKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQ---VSYTSWFLDAFNYAILTKID 101 (255)
T ss_pred --CCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCC---CchHHHHHHHHHhhhhcCCC
Confidence 12345778999999999998741 247999999999999998766 36678899999999999999
Q ss_pred EEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--ccCCCceEEeccccCcceeeeeEEecCceeEe
Q 040503 296 VISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV--ENVAPWILTVGASTTDREFTSYVTLGNKMVIK 373 (767)
Q Consensus 296 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~ 373 (767)
|||||||... +.+.++..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 102 Vin~S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~----------------- 162 (255)
T cd07479 102 VLNLSIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF----------------- 162 (255)
T ss_pred EEEeeccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-----------------
Confidence 9999999863 2345566677788899999999999999765443 345688999998543
Q ss_pred eeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEecc
Q 040503 374 GASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSS 453 (767)
Q Consensus 374 g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~ 453 (767)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCC----CCCcccceE
Q 040503 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMI----DPAIFKPDV 529 (767)
Q Consensus 454 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI 529 (767)
.+.++.|||+|++.. ..+++||||
T Consensus 163 ----------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di 190 (255)
T cd07479 163 ----------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDI 190 (255)
T ss_pred ----------------------------------------------------CCccccccCCCCCcccccCCCCCcCccE
Confidence 246788999996521 267889999
Q ss_pred EeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCC----CCCHHHHHHHHHhccccc
Q 040503 530 TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHP----DWSPAAIKSAIMTTARAE 601 (767)
Q Consensus 530 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~~sp~~ik~~L~~TA~~~ 601 (767)
+|||.+|+++.... .|..++|||||||||||++|||+|++| .++|++||++|++||+++
T Consensus 191 ~apG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 191 VTYGSGVYGSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred EecCCCeeccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 99999999876542 788999999999999999999999999 799999999999999875
No 6
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.5e-48 Score=407.06 Aligned_cols=270 Identities=23% Similarity=0.226 Sum_probs=201.6
Q ss_pred CCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCC
Q 040503 139 ARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNL 218 (767)
Q Consensus 139 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (767)
+++|+||+|+|||||||..||++.+... .++.+...+... .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~----------------------~~l~~~~~~~~~-----------------~ 41 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS----------------------GDLPGNVNVLGD-----------------L 41 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC----------------------CCCCcceeeccc-----------------c
Confidence 5799999999999999999986543211 111111111111 1
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEE
Q 040503 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVIS 298 (767)
Q Consensus 219 ~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn 298 (767)
....|..||||||||||+ ||||+|+|+.+|+. ...+++++||+||+++|++|||
T Consensus 42 ~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~--------~~~~~i~~ai~~a~~~g~~Vin 95 (275)
T cd05562 42 DGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG--------GGELDFAAAIRALAAAGADIIV 95 (275)
T ss_pred CCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC--------CCHHHHHHHHHHHHHcCCCEEE
Confidence 234578899999999994 67999999998873 4478899999999999999999
Q ss_pred eccCCCCccC-cccHHHHHHHHHHhC-CCEEEEecCCCCCCCCC-cccCCCceEEeccccCcceeeeeEEecCceeEeee
Q 040503 299 ASLGSIAREH-LKNTIAIGSFHAMMN-GIVSVAAAGNSGPDDGS-VENVAPWILTVGASTTDREFTSYVTLGNKMVIKGA 375 (767)
Q Consensus 299 ~SlG~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~ 375 (767)
||||...... .+..+..++.++.++ |++||+||||+|+.... .++..|++|+|||++...........+
T Consensus 96 ~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~-------- 167 (275)
T cd05562 96 DDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA-------- 167 (275)
T ss_pred ecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc--------
Confidence 9999864332 344677888888887 99999999999975432 345689999999987543110000000
Q ss_pred eeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCC
Q 040503 376 SVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKE 455 (767)
Q Consensus 376 ~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~ 455 (767)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCC-
Q 040503 456 SGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGV- 534 (767)
Q Consensus 456 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~- 534 (767)
........+.|+++||+. ++++||||+|||.
T Consensus 168 ----------------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~ 199 (275)
T cd05562 168 ----------------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGV 199 (275)
T ss_pred ----------------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcc
Confidence 000012345678899987 7899999999975
Q ss_pred cEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCC
Q 040503 535 DIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTG 614 (767)
Q Consensus 535 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~ 614 (767)
++.+.+.. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++..
T Consensus 200 ~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~----------- 255 (275)
T cd05562 200 NGTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE----------- 255 (275)
T ss_pred cccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------
Confidence 44444332 279999999999999999999999999999999999999999987632
Q ss_pred CCCCCCccCCCccCccCcCC
Q 040503 615 EKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 615 ~~~~~~~~G~G~vd~~~A~~ 634 (767)
...+..||||+||+.+|++
T Consensus 256 -~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 256 -PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred -CCCCCCcCcCcccHHHHhh
Confidence 2245689999999999986
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.5e-47 Score=418.41 Aligned_cols=313 Identities=31% Similarity=0.354 Sum_probs=235.2
Q ss_pred cccccCC-CCCceEEEEecccCCCCCCCccCCCCCCCCC-----CccccccCCCCCcccCCcccceeEEcccchhhhhcc
Q 040503 134 SAWKKAR-FGEDVIIANVDSGVWPESKSFADDGMGPIPS-----KWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRA 207 (767)
Q Consensus 134 ~~~~~~~-~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~-----~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 207 (767)
.+|+++. +|+||+|+|||||||++||+|.+....+... .+...+.. .....++.+++..++|.++...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI--GYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC--CCCcccccCCCeeEcCCCCCCc----
Confidence 3788887 9999999999999999999998764332211 12222221 2244566777777777654221
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecC--CCCCCCCChhHHHHH
Q 040503 208 KNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWK--PNENDSCASADILSA 285 (767)
Q Consensus 208 ~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~~~~~~~~~~i~~a 285 (767)
.....|..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. .. .+....++++
T Consensus 75 ----------~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~---~~~~~~~~~a 136 (346)
T cd07475 75 ----------ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGG---STYDDAYAKA 136 (346)
T ss_pred ----------cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCC---CCCHHHHHHH
Confidence 11245789999999999999864321 1234589999999999999974 33 4788899999
Q ss_pred HHHhhhcCCcEEEeccCCCCc-cCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcc----------------cCCCce
Q 040503 286 YDLAIHDGVDVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVE----------------NVAPWI 348 (767)
Q Consensus 286 id~a~~~gvdVIn~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~~p~v 348 (767)
++++++.|++|||||||.... ......+..++.++.++|++||+||||+|....... ...+++
T Consensus 137 i~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 999999999999999998742 244566778888899999999999999985433221 224566
Q ss_pred EEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEe
Q 040503 349 LTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY 428 (767)
Q Consensus 349 itVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~ 428 (767)
|+||+++...
T Consensus 217 i~Vga~~~~~---------------------------------------------------------------------- 226 (346)
T cd07475 217 LTVASANKKV---------------------------------------------------------------------- 226 (346)
T ss_pred eEEeeccccc----------------------------------------------------------------------
Confidence 6666643100
Q ss_pred cCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCc
Q 040503 429 GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRM 508 (767)
Q Consensus 429 ~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 508 (767)
.....+.
T Consensus 227 -------------------------------------------------------------------------~~~~~~~ 233 (346)
T cd07475 227 -------------------------------------------------------------------------PNPNGGQ 233 (346)
T ss_pred -------------------------------------------------------------------------CCCCCCc
Confidence 0111357
Q ss_pred eecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHh----CCC
Q 040503 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTL----HPD 584 (767)
Q Consensus 509 ~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~ 584 (767)
++.||+|||+. ..++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.
T Consensus 234 ~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~ 298 (346)
T cd07475 234 MSGFSSWGPTP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPK 298 (346)
T ss_pred cCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 88999999998 8999999999999999987653 7899999999999999999999997 789
Q ss_pred CCHHH----HHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCC
Q 040503 585 WSPAA----IKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 585 ~sp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
|++.+ ||.+|++||.+.... ......+.+..+|+|+||+.+|++
T Consensus 299 l~~~~~~~~ik~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 299 LSGEELVDLVKNLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCHHHHHHHHHHHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 99876 788999999853211 133455677889999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-46 Score=405.07 Aligned_cols=294 Identities=29% Similarity=0.343 Sum_probs=228.5
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccc-hhhhhccCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQG-TIEELRAKNPD 211 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~ 211 (767)
+.+|+.+++|+||+|||||+|||++||+|.+.-.. +.++.+.++|..+ +....
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~--------------------~~~~~~~~d~~~~~~~~~~------ 56 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP--------------------GCKVAGGYDFVGDDYDGTN------ 56 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC--------------------CceeccccccCCccccccc------
Confidence 57999999999999999999999999999864110 1112222223211 11000
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh
Q 040503 212 AVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH 291 (767)
Q Consensus 212 ~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~ 291 (767)
...+...+.|..||||||||||+|...+ .| +.||||+|+|+.+|++...+ ....+.++++|++|++
T Consensus 57 --~~~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~~ 122 (312)
T cd07489 57 --PPVPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSG---STTEDTIIAAFLRAYE 122 (312)
T ss_pred --CCCCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCC---CCCHHHHHHHHHHHHh
Confidence 1122345667899999999999998643 23 38999999999999998666 4778889999999999
Q ss_pred cCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC---cccCCCceEEeccccCcceeeeeEEecC
Q 040503 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS---VENVAPWILTVGASTTDREFTSYVTLGN 368 (767)
Q Consensus 292 ~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~~~ 368 (767)
++++|||||||... .+..+.+...+.++.++|+++|+||||+|..... .+...+++|+||+++
T Consensus 123 ~~~~iIn~S~g~~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------- 188 (312)
T cd07489 123 DGADVITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------- 188 (312)
T ss_pred cCCCEEEeCCCcCC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------
Confidence 99999999999873 3344677778888999999999999999865322 234567888888732
Q ss_pred ceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEE
Q 040503 369 KMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGM 448 (767)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~ 448 (767)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccce
Q 040503 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPD 528 (767)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 528 (767)
+.||++||+. +.+.|||
T Consensus 189 -------------------------------------------------------------~~~s~~g~~~--~~~~kpd 205 (312)
T cd07489 189 -------------------------------------------------------------SYFSSWGPTN--ELYLKPD 205 (312)
T ss_pred -------------------------------------------------------------CCccCCCCCC--CCCcCcc
Confidence 4578999998 7899999
Q ss_pred EEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhC-CCCCHHHHHHHHHhccccccCCCCc
Q 040503 529 VTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH-PDWSPAAIKSAIMTTARAEDSSNRP 607 (767)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~~sp~~ik~~L~~TA~~~~~~g~~ 607 (767)
|+|||.+|+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++......
T Consensus 206 v~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~ 274 (312)
T cd07489 206 VAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGT 274 (312)
T ss_pred EEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCC
Confidence 9999999999987642 168999999999999999999999999 9999999999999999887533211
Q ss_pred ccCCCCCCCCCCCccCCCccCccCcCCCCc
Q 040503 608 ILDQNTGEKATPFAYGAGHVNPNSALDPGL 637 (767)
Q Consensus 608 ~~~~~~~~~~~~~~~G~G~vd~~~A~~~gl 637 (767)
- .....++...+|||+||+.+|++..-
T Consensus 275 ~---~~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 275 S---ALPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred c---cccCCCCHhhcCcceeeHHHHhcCCc
Confidence 1 11114667899999999999998643
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=5.1e-46 Score=388.60 Aligned_cols=248 Identities=25% Similarity=0.324 Sum_probs=202.7
Q ss_pred ccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCC
Q 040503 135 AWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVI 214 (767)
Q Consensus 135 ~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (767)
+|..+++|+||+|||||+|||++||+|.+....+. ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-------------------------~~~~~--------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-------------------------FTYAA--------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-------------------------cCccc---------------
Confidence 79999999999999999999999999986421110 00000
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCC
Q 040503 215 PQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGV 294 (767)
Q Consensus 215 ~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gv 294 (767)
......|..+|||||||||+|+.. ..+.||||+|+|+.+|++...+. .++..++++||+||+++|+
T Consensus 42 --~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~--~~~~~~i~~ai~~a~~~g~ 107 (267)
T cd07476 42 --AACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRR--GCSQLDLARAINLALEQGA 107 (267)
T ss_pred --cCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCC--CCCHHHHHHHHHHHHHCCC
Confidence 012345778999999999998742 13489999999999999976542 2457889999999999999
Q ss_pred cEEEeccCCCCc-cCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeEe
Q 040503 295 DVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIK 373 (767)
Q Consensus 295 dVIn~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~ 373 (767)
+|||||||.... ......+..++.++.++|++||+||||+|......+...|++|+|||++.+
T Consensus 108 ~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------- 171 (267)
T cd07476 108 HIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------- 171 (267)
T ss_pred CEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------
Confidence 999999997632 234566788888999999999999999997766667778999999985421
Q ss_pred eeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEecc
Q 040503 374 GASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSS 453 (767)
Q Consensus 374 g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~ 453 (767)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCC
Q 040503 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPG 533 (767)
Q Consensus 454 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 533 (767)
+.++.||++|+.. .||||+|||
T Consensus 172 -----------------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG 193 (267)
T cd07476 172 -----------------------------------------------------GLPLKFSNWGADY-----RKKGILAPG 193 (267)
T ss_pred -----------------------------------------------------CCeeeecCCCCCC-----CCceEEecC
Confidence 3456789999764 388999999
Q ss_pred CcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCC----CCHHHHHHHHHhccccccC
Q 040503 534 VDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD----WSPAAIKSAIMTTARAEDS 603 (767)
Q Consensus 534 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----~sp~~ik~~L~~TA~~~~~ 603 (767)
.+|+++.+.. .|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 194 ~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 194 ENILGAALGG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred CCceeecCCC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 9999988763 7999999999999999999999999887 9999999999999998754
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-45 Score=380.06 Aligned_cols=238 Identities=24% Similarity=0.335 Sum_probs=192.6
Q ss_pred eEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCC
Q 040503 145 VIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDE 224 (767)
Q Consensus 145 V~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 224 (767)
|+|||||||||++||+|.+. ++..+++. .....|.
T Consensus 1 V~VavIDsGvd~~hp~l~~~--------------------------~~~~~~~~-------------------~~~~~~~ 35 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV--------------------------VIARLFFA-------------------GPGAPAP 35 (239)
T ss_pred CEEEEEeCCCCCCCcccccC--------------------------ccccccCC-------------------CCCCCCC
Confidence 78999999999999999753 11111111 0134577
Q ss_pred CCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCCC
Q 040503 225 EGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSI 304 (767)
Q Consensus 225 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~~ 304 (767)
.+|||||||||+|.... . .|+||+|+|+.+|++...+....++..++++||+||++.|++|||||||..
T Consensus 36 ~~HGT~vAgiia~~~~~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~ 104 (239)
T cd05561 36 SAHGTAVASLLAGAGAQ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP 104 (239)
T ss_pred CCCHHHHHHHHhCCCCC----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 89999999999998522 1 699999999999999865322247788999999999999999999999975
Q ss_pred CccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccccC
Q 040503 305 AREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD-GSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLL 383 (767)
Q Consensus 305 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 383 (767)
. ...+..++.++.++|++||+||||+|+.. ..+++..+++|+||+++.+
T Consensus 105 ~----~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~-------------------------- 154 (239)
T cd05561 105 P----NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR-------------------------- 154 (239)
T ss_pred C----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC--------------------------
Confidence 2 35677788889999999999999999753 3445567899999985431
Q ss_pred CCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccccc
Q 040503 384 NDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNM 463 (767)
Q Consensus 384 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~ 463 (767)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCC
Q 040503 464 VHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEA 543 (767)
Q Consensus 464 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 543 (767)
+.++.||++|+.. ||.|||.+|+++.+..
T Consensus 155 -------------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~ 183 (239)
T cd05561 155 -------------------------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPGG 183 (239)
T ss_pred -------------------------------------------CCccccCCCCCcc--------eEEccccceecccCCC
Confidence 3567899999987 9999999999976552
Q ss_pred CCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccC
Q 040503 544 SGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYG 623 (767)
Q Consensus 544 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 623 (767)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++... ..+..||
T Consensus 184 -------------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~------------~~d~~~G 237 (239)
T cd05561 184 -------------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP------------GRDPVFG 237 (239)
T ss_pred -------------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC------------CcCCCcC
Confidence 799999999999999999999999999 99999999999999876432 3456889
Q ss_pred CC
Q 040503 624 AG 625 (767)
Q Consensus 624 ~G 625 (767)
||
T Consensus 238 ~G 239 (239)
T cd05561 238 YG 239 (239)
T ss_pred CC
Confidence 88
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.5e-45 Score=390.33 Aligned_cols=292 Identities=38% Similarity=0.500 Sum_probs=217.3
Q ss_pred CCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCC
Q 040503 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTG 221 (767)
Q Consensus 142 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (767)
|+||+|||||+|||++||+|.+.. .+++++...++|............ ..........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 58 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDDYDPMDTRP--YPSPLGDASA 58 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCCCCcccccc--cccccccCCC
Confidence 899999999999999999998531 122334444444322110000000 0000011234
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEecc
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASL 301 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~Sl 301 (767)
.|..+|||||||+|+|...+ ...+.|+||+|+|+.+|+++..+ .+...+++++|+|+++++++||||||
T Consensus 59 ~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Iin~S~ 127 (295)
T cd07474 59 GDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGG---SGTTDVIIAAIEQAVDDGMDVINLSL 127 (295)
T ss_pred CCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCC---CCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 56899999999999988643 23348999999999999998554 47889999999999999999999999
Q ss_pred CCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--ccCCCceEEeccccCcceeeeeEEecCceeEeeeeeec
Q 040503 302 GSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV--ENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQ 379 (767)
Q Consensus 302 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 379 (767)
|.... ...+.+..++.++.++|+++|+||||+|...... +...+++|+||++....
T Consensus 128 g~~~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~--------------------- 185 (295)
T cd07474 128 GSSVN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD--------------------- 185 (295)
T ss_pred CCCCC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC---------------------
Confidence 98732 2456778888899999999999999998765544 34578999999964210
Q ss_pred cccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcc
Q 040503 380 KGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNK 459 (767)
Q Consensus 380 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~ 459 (767)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCC-CCCCCCCCcccceEEeCCCcEEE
Q 040503 460 VLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSR-GPNMIDPAIFKPDVTAPGVDIIA 538 (767)
Q Consensus 460 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~~KPDI~APG~~I~s 538 (767)
.........|+++ |++. ..++||||+|||.+|++
T Consensus 186 -------------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~ 220 (295)
T cd07474 186 -------------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMS 220 (295)
T ss_pred -------------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEe
Confidence 0001233344454 5555 78899999999999999
Q ss_pred eecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCC
Q 040503 539 AFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKAT 618 (767)
Q Consensus 539 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 618 (767)
++.... ..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ...+
T Consensus 221 ~~~~~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~ 281 (295)
T cd07474 221 TAPGSG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYP 281 (295)
T ss_pred eccCCC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCC
Confidence 987631 278999999999999999999999999999999999999999998754321 1124
Q ss_pred CCccCCCccCccCc
Q 040503 619 PFAYGAGHVNPNSA 632 (767)
Q Consensus 619 ~~~~G~G~vd~~~A 632 (767)
+..+|||+||+.+|
T Consensus 282 ~~~~G~G~l~~~~A 295 (295)
T cd07474 282 VSRQGAGRVDALRA 295 (295)
T ss_pred hhccCcceeccccC
Confidence 57899999999987
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=5.2e-45 Score=387.04 Aligned_cols=271 Identities=23% Similarity=0.272 Sum_probs=190.6
Q ss_pred CceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCC-CCcccCCccc--ceeEEcccchhhh----hccCCCC--CC
Q 040503 143 EDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDN-YKGVSCNKKL--IGIRYINQGTIEE----LRAKNPD--AV 213 (767)
Q Consensus 143 ~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-~~~~~~n~ki--~g~~~~~~~~~~~----~~~~~~~--~~ 213 (767)
|+|+|||||||||++||+|++. .|.+..+... -....-|+.+ +++++|...+... ..+.+.. ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999875 4443322211 0000011111 2233333211100 0000000 00
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcC
Q 040503 214 IPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDG 293 (767)
Q Consensus 214 ~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~g 293 (767)
...+...+.+..+|||||||||++...++. | +.||||+|+|+.+|++.... ....++++||+||++.|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~~g~----~~~~~i~~Ai~~a~~~g 141 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVPNGD----ERDKDIANAIRYAVDNG 141 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEecCCC----cCHHHHHHHHHHHHHCC
Confidence 011233455789999999999999864332 2 48999999999999986443 66788999999999999
Q ss_pred CcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc---c--------cCCCceEEeccccCcceeee
Q 040503 294 VDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV---E--------NVAPWILTVGASTTDREFTS 362 (767)
Q Consensus 294 vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~~p~vitVgA~~~~~~~~~ 362 (767)
++|||||||.... .....+..++..+.++|+++|+||||+|...... + ...+++|+|||++...
T Consensus 142 ~~IiN~S~G~~~~-~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~---- 216 (291)
T cd07483 142 AKVINMSFGKSFS-PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY---- 216 (291)
T ss_pred CcEEEeCCCCCCC-CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC----
Confidence 9999999997522 2334567777888999999999999998542211 1 1236677777754321
Q ss_pred eEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHH
Q 040503 363 YVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQ 442 (767)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 442 (767)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCC
Q 040503 443 AGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDP 522 (767)
Q Consensus 443 ~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 522 (767)
....++.||++|+.
T Consensus 217 --------------------------------------------------------------~~~~~~~~Sn~G~~---- 230 (291)
T cd07483 217 --------------------------------------------------------------ENNLVANFSNYGKK---- 230 (291)
T ss_pred --------------------------------------------------------------CcccccccCCCCCC----
Confidence 01246889999974
Q ss_pred CcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 523 AIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 523 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
+|||+|||.+|+++.+.. .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 231 ---~vdi~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 ---NVDVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ---ceEEEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 359999999999987653 7999999999999999999999999999999999999999984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9e-45 Score=380.51 Aligned_cols=245 Identities=29% Similarity=0.380 Sum_probs=195.6
Q ss_pred ceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCC-CC
Q 040503 144 DVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTT-GR 222 (767)
Q Consensus 144 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 222 (767)
||+||||||||+++||+|... ...++.++.+.++|.+. ... ..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~-------------------~~~~~~~i~~~~~~~~~-----------------~~~~~~ 44 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFK-------------------HLFKNLRILGEYDFVDN-----------------SNNTNY 44 (261)
T ss_pred CCEEEEEccCCCccCcchhhh-------------------ccccCCceeeeecCccC-----------------CCCCCC
Confidence 799999999999999999532 11123456666666543 112 35
Q ss_pred CCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccC
Q 040503 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLG 302 (767)
Q Consensus 223 D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG 302 (767)
|..+|||||||||+|+.. +.+.||||+|+|+.+|+....... ......++.|++||.+.|++|||||||
T Consensus 45 ~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~-~~~~~~~~~ai~~a~~~~v~VIn~S~G 113 (261)
T cd07493 45 TDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASET-PVEEDNWVAAAEWADSLGVDIISSSLG 113 (261)
T ss_pred CCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcc-cccHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 788999999999999852 235899999999999987643311 245667899999999999999999999
Q ss_pred CCCccC------------cccHHHHHHHHHHhCCCEEEEecCCCCCCC---CCcccCCCceEEeccccCcceeeeeEEec
Q 040503 303 SIAREH------------LKNTIAIGSFHAMMNGIVSVAAAGNSGPDD---GSVENVAPWILTVGASTTDREFTSYVTLG 367 (767)
Q Consensus 303 ~~~~~~------------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~~p~vitVgA~~~~~~~~~~~~~~ 367 (767)
...... ....+..+++.+.++|++||+||||+|... ...+...+++|+|||.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~----------- 182 (261)
T cd07493 114 YTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA----------- 182 (261)
T ss_pred cCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc-----------
Confidence 873211 123577788889999999999999999763 334456799999998542
Q ss_pred CceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceE
Q 040503 368 NKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVG 447 (767)
Q Consensus 368 ~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g 447 (767)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccc
Q 040503 448 MILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKP 527 (767)
Q Consensus 448 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 527 (767)
.+.++.||++||+. ++++||
T Consensus 183 ----------------------------------------------------------~~~~~~~S~~G~~~--~~~~~p 202 (261)
T cd07493 183 ----------------------------------------------------------NGNKASFSSIGPTA--DGRLKP 202 (261)
T ss_pred ----------------------------------------------------------CCCCCccCCcCCCC--CCCcCC
Confidence 13567899999988 899999
Q ss_pred eEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
||+|||.+|++.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 203 di~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 203 DVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999985433 27899999999999999999999999999999999999999984
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.9e-44 Score=378.50 Aligned_cols=247 Identities=31% Similarity=0.388 Sum_probs=194.5
Q ss_pred CCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCC
Q 040503 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTG 221 (767)
Q Consensus 142 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (767)
|+||+|||||+||+++||+|.+. |.+... ..+ ...++..+ .......+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~----------~~~------~~~~~~~d--------~~~~~~~~ 48 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG----------GSA------DHDYNWFD--------PVGNTPLP 48 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC----------CCc------cccccccc--------CCCCCCCC
Confidence 89999999999999999999864 111000 000 00000000 00112355
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh----------
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH---------- 291 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~---------- 291 (767)
.|..+|||||||||+|.... +...||||+|+|+.+|++.... +...+++++++++++
T Consensus 49 ~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (264)
T cd07481 49 YDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNG----GNDADYLRCAQWMLAPTDSAGNPAD 115 (264)
T ss_pred CCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCC----CcHHHHHHHHHHHHhcccccccccc
Confidence 68889999999999987532 2237999999999999998765 788899999999875
Q ss_pred --cCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC---cccCCCceEEeccccCcceeeeeEEe
Q 040503 292 --DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS---VENVAPWILTVGASTTDREFTSYVTL 366 (767)
Q Consensus 292 --~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (767)
.|++|||||||.... ....+..++..+.++|++||+||||+|..... .+...|++|+|||++.+
T Consensus 116 ~~~~~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------- 184 (264)
T cd07481 116 PDLAPDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------- 184 (264)
T ss_pred cccCCeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------
Confidence 789999999998742 34556666777889999999999999865443 34567899999985432
Q ss_pred cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCce
Q 040503 367 GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV 446 (767)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~ 446 (767)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCccc
Q 040503 447 GMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFK 526 (767)
Q Consensus 447 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 526 (767)
+.++.||++||.. .+++|
T Consensus 185 ------------------------------------------------------------~~~~~~S~~g~~~--~~~~~ 202 (264)
T cd07481 185 ------------------------------------------------------------DVLADFSSRGPST--YGRIK 202 (264)
T ss_pred ------------------------------------------------------------CCCccccCCCCCC--CCCcC
Confidence 4678899999998 78999
Q ss_pred ceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 040503 527 PDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD--WSPAAIKSAIMTTAR 599 (767)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--~sp~~ik~~L~~TA~ 599 (767)
|||+|||.+|.++++.. .|..++|||||||+|||++|||+|++|. ++++|||++|++||+
T Consensus 203 ~dv~ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 203 PDISAPGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ceEEECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999999998763 7899999999999999999999999999 999999999999984
No 15
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-45 Score=375.94 Aligned_cols=334 Identities=23% Similarity=0.347 Sum_probs=261.2
Q ss_pred CCCCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccc------cc------------cceEEEEc---ceeee
Q 040503 25 AAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEE------AE------------SSIFHSYG---RFING 83 (767)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~------------~~i~~~y~---~~~~g 83 (767)
.....|||.|++... ++..+.|.++++...+.... .. ..+.+.|. .++++
T Consensus 78 ~~~~~YiV~f~~~~~---------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~ 148 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDAS---------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRG 148 (501)
T ss_pred ccccceEEEeCCCcc---------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhc
Confidence 346799999996544 46677788887766542211 00 01334443 37888
Q ss_pred EEEEcCHHHHHHhhCCCCeEEEEeCcccccCc-----cCCCcccCCccCCCCC-------CccccccCCCCCceEEEEec
Q 040503 84 FGAVLEEEHAKQLENHPGVVSVFPDEGAKLHT-----TRSWDFLGLEKDNFIP-------PDSAWKKARFGEDVIIANVD 151 (767)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~V~~v~~~~~~~~~~-----~~s~~~~g~~~~~~~~-------~~~~~~~~~~G~gV~VgVID 151 (767)
+...++.+-+..++++|-++.++++..++... .+....|||-++.+.. ...++ +-..|+||...|+|
T Consensus 149 y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y-~~~aG~gvtaYv~D 227 (501)
T KOG1153|consen 149 YTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVY-EIDAGKGVTAYVLD 227 (501)
T ss_pred cccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEe-ecccCCCeEEEEec
Confidence 88999999999999999999999998876553 2333445555442211 01222 23489999999999
Q ss_pred ccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchhh
Q 040503 152 SGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHT 231 (767)
Q Consensus 152 tGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThV 231 (767)
|||+.+||+|.++ +.|-- |.. ......|++||||||
T Consensus 228 TGVni~H~dFegR------a~wGa-~i~-------------------------------------~~~~~~D~nGHGTH~ 263 (501)
T KOG1153|consen 228 TGVNIEHPDFEGR------AIWGA-TIP-------------------------------------PKDGDEDCNGHGTHV 263 (501)
T ss_pred ccccccccccccc------eeccc-ccC-------------------------------------CCCcccccCCCccee
Confidence 9999999999875 12211 100 012456899999999
Q ss_pred hhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc---------CCcEEEeccC
Q 040503 232 LATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD---------GVDVISASLG 302 (767)
Q Consensus 232 Agi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~---------gvdVIn~SlG 302 (767)
||+|++.. .|||.+++|+++||+.++| .+..+++++++|++++. +..|.|||+|
T Consensus 264 AG~I~sKt--------------~GvAK~s~lvaVKVl~~dG---sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlG 326 (501)
T KOG1153|consen 264 AGLIGSKT--------------FGVAKNSNLVAVKVLRSDG---SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLG 326 (501)
T ss_pred eeeeeccc--------------cccccccceEEEEEeccCC---cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecC
Confidence 99999986 6889999999999999998 69999999999999986 4899999999
Q ss_pred CCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcc-cCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccc
Q 040503 303 SIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVE-NVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKG 381 (767)
Q Consensus 303 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 381 (767)
+. ..-.+..|++.|.+.||++++||||+..+++..+ +.+..+|||||++..
T Consensus 327 g~----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------------ 378 (501)
T KOG1153|consen 327 GF----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------------ 378 (501)
T ss_pred Cc----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc------------------------
Confidence 97 4456888889999999999999999998877665 567899999997642
Q ss_pred cCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccc
Q 040503 382 LLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVL 461 (767)
Q Consensus 382 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~ 461 (767)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeec
Q 040503 462 NMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFT 541 (767)
Q Consensus 462 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 541 (767)
+.+|.||+||++. ||.|||++|+|+|.
T Consensus 379 ---------------------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~i 405 (501)
T KOG1153|consen 379 ---------------------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWI 405 (501)
T ss_pred ---------------------------------------------cchhhhcCcccee--------eeecCchhhhhhhh
Confidence 5789999999999 99999999999999
Q ss_pred CCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCC---------CCHHHHHHHHHhccccc
Q 040503 542 EASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD---------WSPAAIKSAIMTTARAE 601 (767)
Q Consensus 542 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---------~sp~~ik~~L~~TA~~~ 601 (767)
+... .-.+.||||||+|||||++|..+..+|. .||.++|..++.-..+.
T Consensus 406 Gs~~-----------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~d 463 (501)
T KOG1153|consen 406 GSNN-----------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQD 463 (501)
T ss_pred cCcc-----------chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccccc
Confidence 8643 6678999999999999999999999883 38999998888766543
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.6e-44 Score=378.28 Aligned_cols=264 Identities=25% Similarity=0.322 Sum_probs=203.5
Q ss_pred cccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCC
Q 040503 134 SAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAV 213 (767)
Q Consensus 134 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 213 (767)
++|..+++|+||+|+|||||||++||+|.+.... .+...+...+.....
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~------------------------~~~~~~~~~~~~~~~------- 49 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG------------------------DGYDPAVNGYNFVPN------- 49 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC------------------------CCcccccCCcccccc-------
Confidence 4799999999999999999999999999875100 000000111000000
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcC
Q 040503 214 IPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDG 293 (767)
Q Consensus 214 ~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~g 293 (767)
.........|..||||||||||+|+..+....-|++ .+.|+||+|+|+.+|++...+ .+..+.++++|+||++.|
T Consensus 50 ~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~g 124 (273)
T cd07485 50 VGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRY---YVGDDAVAAAIVYAADNG 124 (273)
T ss_pred cCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHcC
Confidence 000122445788999999999999764432222221 346799999999999998765 478889999999999999
Q ss_pred CcEEEeccCCCCccCcccHHHHHHHHHHhC-------CCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEe
Q 040503 294 VDVISASLGSIAREHLKNTIAIGSFHAMMN-------GIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTL 366 (767)
Q Consensus 294 vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (767)
++|||||||......+...+..++..+.++ |++||+||||+|......++..+++|+||+++.+
T Consensus 125 ~~Vin~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~--------- 195 (273)
T cd07485 125 AVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN--------- 195 (273)
T ss_pred CcEEEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC---------
Confidence 999999999874344556677778888887 9999999999998776666778999999985431
Q ss_pred cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCce
Q 040503 367 GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV 446 (767)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~ 446 (767)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCccc
Q 040503 447 GMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFK 526 (767)
Q Consensus 447 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 526 (767)
+.++.||++|+..
T Consensus 196 ------------------------------------------------------------~~~~~~S~~g~~~------- 208 (273)
T cd07485 196 ------------------------------------------------------------DNKASFSNYGRWV------- 208 (273)
T ss_pred ------------------------------------------------------------CCcCccccCCCce-------
Confidence 3567899999987
Q ss_pred ceEEeCCC-cEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 040503 527 PDVTAPGV-DIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD-WSPAAIKSAIMTT 597 (767)
Q Consensus 527 PDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-~sp~~ik~~L~~T 597 (767)
||+|||. .|+++++.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 209 -~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 -DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred -EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 89988765321 11237899999999999999999999999999 9999999999986
No 17
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.3e-43 Score=383.36 Aligned_cols=222 Identities=24% Similarity=0.316 Sum_probs=167.4
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEecc
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASL 301 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~Sl 301 (767)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++...+ ..+....+++||++|++.|++||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~g-s~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLG-SMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCC-CccchHHHHHHHHHHHHcCCCEEEecC
Confidence 478899999999999985332 33489999999999999865431 123446799999999999999999999
Q ss_pred CCCCccCcccHHHHHHHH-HHhCCCEEEEecCCCCCCCCCccc---CCCceEEeccccCcceeeeeEEecCceeEeeeee
Q 040503 302 GSIAREHLKNTIAIGSFH-AMMNGIVSVAAAGNSGPDDGSVEN---VAPWILTVGASTTDREFTSYVTLGNKMVIKGASV 377 (767)
Q Consensus 302 G~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~ 377 (767)
|..........+..++.+ +.++||+||+||||+|+...+... ..+++|+|||+.......
T Consensus 253 G~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~---------------- 316 (412)
T cd04857 253 GEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMA---------------- 316 (412)
T ss_pred CcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccc----------------
Confidence 987321112233444444 347899999999999988776653 358999999964321000
Q ss_pred eccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCC
Q 040503 378 SQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESG 457 (767)
Q Consensus 378 ~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~ 457 (767)
..+.+.
T Consensus 317 ---------~~y~~~----------------------------------------------------------------- 322 (412)
T cd04857 317 ---------AEYSLR----------------------------------------------------------------- 322 (412)
T ss_pred ---------cccccc-----------------------------------------------------------------
Confidence 000000
Q ss_pred cccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEE
Q 040503 458 NKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDII 537 (767)
Q Consensus 458 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 537 (767)
....+.++.||||||+. ++++||||+|||+.|.
T Consensus 323 ---------------------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~ 355 (412)
T cd04857 323 ---------------------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIA 355 (412)
T ss_pred ---------------------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEE
Confidence 00135689999999998 9999999999999998
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH----hCCCCCHHHHHHHHHhcccc
Q 040503 538 AAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT----LHPDWSPAAIKSAIMTTARA 600 (767)
Q Consensus 538 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~ 600 (767)
+.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||++
T Consensus 356 s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 356 SVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411 (412)
T ss_pred EcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence 752211 12789999999999999999999985 57899999999999999975
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-43 Score=370.50 Aligned_cols=257 Identities=30% Similarity=0.447 Sum_probs=204.5
Q ss_pred CCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCC
Q 040503 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTG 221 (767)
Q Consensus 142 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (767)
|+||+|+|||+||+++||+|.+... ....+.... ......
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~--------------------------~~~~~~~~~--------------~~~~~~ 40 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII--------------------------RFADFVNTV--------------NGRTTP 40 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc--------------------------ccccccccc--------------cCCCCC
Confidence 8999999999999999999986411 011111100 012345
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc----CCcEE
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD----GVDVI 297 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~----gvdVI 297 (767)
.|..+|||||||+|+|...+. ...+.||||+|+|+.+|+++..+ .+...++++||+|+++. +++||
T Consensus 41 ~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~---~~~~~~~~~ai~~~~~~~~~~~~~Ii 110 (264)
T cd07487 41 YDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSG---SGSESDIIAGIDWVVENNEKYNIRVV 110 (264)
T ss_pred CCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCC---CccHHHHHHHHHHHHhhccccCceEE
Confidence 677899999999999986432 23358999999999999998876 47788999999999998 99999
Q ss_pred EeccCCCCc-cCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC--CcccCCCceEEeccccCcceeeeeEEecCceeEee
Q 040503 298 SASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDG--SVENVAPWILTVGASTTDREFTSYVTLGNKMVIKG 374 (767)
Q Consensus 298 n~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g 374 (767)
|||||.... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||++.+..
T Consensus 111 n~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------- 175 (264)
T cd07487 111 NLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------- 175 (264)
T ss_pred EeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------
Confidence 999998742 446677888899999999999999999997765 34456789999999654320
Q ss_pred eeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccC
Q 040503 375 ASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSK 454 (767)
Q Consensus 375 ~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~ 454 (767)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCC
Q 040503 455 ESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGV 534 (767)
Q Consensus 455 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 534 (767)
....++.||++||+. ++++||||+|||.
T Consensus 176 --------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~ 203 (264)
T cd07487 176 --------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGE 203 (264)
T ss_pred --------------------------------------------------CCccccccccCCCCC--CCCcCCCEEcccc
Confidence 002478899999998 8999999999999
Q ss_pred cEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 535 DIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 535 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
+|+++.+.... ........|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 204 ~i~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 204 NIVSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ceEeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99998654311 01122347899999999999999999999999999999999999999984
No 19
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.7e-43 Score=373.35 Aligned_cols=266 Identities=24% Similarity=0.218 Sum_probs=188.3
Q ss_pred EEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCC
Q 040503 146 IIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEE 225 (767)
Q Consensus 146 ~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 225 (767)
+|||||||||..||+|.+. +.....+... .....|..
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~~-----------------~~~~~d~~ 38 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSDE-----------------PGWTADDL 38 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hccccccccC-----------------CCCcCCCC
Confidence 7999999999999999753 1111111100 01156899
Q ss_pred CCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCC-CCCCChhHHHHHHHHhhhcC---CcEEEecc
Q 040503 226 GHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNE-NDSCASADILSAYDLAIHDG---VDVISASL 301 (767)
Q Consensus 226 gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~-~~~~~~~~i~~aid~a~~~g---vdVIn~Sl 301 (767)
||||||||||++.... .....|+||+|+|+.+|++...+. ......+++++||+|+++.+ ++||||||
T Consensus 39 gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~Sl 110 (291)
T cd04847 39 GHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSL 110 (291)
T ss_pred CChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 9999999999976432 123479999999999999987641 11356788999999999854 59999999
Q ss_pred CCCCccC--cccHHHHHHHH-HHhCCCEEEEecCCCCCCCCCc------------ccCCCceEEeccccCcceeeeeEEe
Q 040503 302 GSIAREH--LKNTIAIGSFH-AMMNGIVSVAAAGNSGPDDGSV------------ENVAPWILTVGASTTDREFTSYVTL 366 (767)
Q Consensus 302 G~~~~~~--~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~~p~vitVgA~~~~~~~~~~~~~ 366 (767)
|...... ....+..++.+ +.++|++||+||||+|...... +..++++|+|||++.+.......
T Consensus 111 G~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s-- 188 (291)
T cd04847 111 GSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA-- 188 (291)
T ss_pred CCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc--
Confidence 9973221 11245555544 4589999999999999765432 23467999999987643110000
Q ss_pred cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCce
Q 040503 367 GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV 446 (767)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~ 446 (767)
.+
T Consensus 189 ------------------------~~------------------------------------------------------ 190 (291)
T cd04847 189 ------------------------RY------------------------------------------------------ 190 (291)
T ss_pred ------------------------cc------------------------------------------------------
Confidence 00
Q ss_pred EEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCccc
Q 040503 447 GMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFK 526 (767)
Q Consensus 447 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 526 (767)
+.......+.||++||.. ++.+|
T Consensus 191 -------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~K 213 (291)
T cd04847 191 -------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIK 213 (291)
T ss_pred -------------------------------------------------------cccccccCCCccccCCCC--CCCcC
Confidence 000011233499999998 99999
Q ss_pred ceEEeCCCcEEEeecCCCCCC-----CCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 527 PDVTAPGVDIIAAFTEASGPS-----PDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
|||+|||++|.+......... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 214 PDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 214 PDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999988654211000 0001112348999999999999999999999999999999999999999984
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=2.7e-42 Score=360.73 Aligned_cols=233 Identities=33% Similarity=0.438 Sum_probs=195.3
Q ss_pred ccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCC
Q 040503 135 AWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVI 214 (767)
Q Consensus 135 ~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (767)
+|..+++|+||+|||||+||+++||+|.++ +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~~-------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVGG-------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCCC--------------
Confidence 777889999999999999999999999754 1112222211
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc--
Q 040503 215 PQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD-- 292 (767)
Q Consensus 215 ~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~-- 292 (767)
....|..+|||||||||+++. .||||+|+|+.+|+++..+ ....+.++++++|+++.
T Consensus 57 ----~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~---~~~~~~~~~ai~~~~~~~~ 115 (255)
T cd04077 57 ----DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNG---SGTLSGIIAGLEWVANDAT 115 (255)
T ss_pred ----CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHhccc
Confidence 125578899999999999874 6899999999999998775 47788999999999987
Q ss_pred ---CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-CcccCCCceEEeccccCcceeeeeEEecC
Q 040503 293 ---GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDG-SVENVAPWILTVGASTTDREFTSYVTLGN 368 (767)
Q Consensus 293 ---gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 368 (767)
+++|||||||... ...+..++.++.++|+++|+||||+|.... ..+...|++|+||+++.+
T Consensus 116 ~~~~~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------- 180 (255)
T cd04077 116 KRGKPAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------- 180 (255)
T ss_pred ccCCCeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------
Confidence 4899999999873 456777788899999999999999997653 444567999999996532
Q ss_pred ceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEE
Q 040503 369 KMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGM 448 (767)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~ 448 (767)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccce
Q 040503 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPD 528 (767)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 528 (767)
+.++.||++||.. |
T Consensus 181 ----------------------------------------------------------~~~~~~S~~g~~~--------~ 194 (255)
T cd04077 181 ----------------------------------------------------------DARASFSNYGSCV--------D 194 (255)
T ss_pred ----------------------------------------------------------CCccCcccCCCCC--------c
Confidence 3467899999988 9
Q ss_pred EEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 040503 529 VTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARA 600 (767)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~ 600 (767)
|+|||.+|.++..... ..|..++|||||||+|||++|||+|++|.+++++||++|++||++
T Consensus 195 i~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 195 IFAPGVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EEeCCCCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9999999999876422 279999999999999999999999999999999999999999963
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-42 Score=360.80 Aligned_cols=253 Identities=31% Similarity=0.378 Sum_probs=188.8
Q ss_pred ceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCC
Q 040503 144 DVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRD 223 (767)
Q Consensus 144 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 223 (767)
||+|||||+|||++||+|.+. +...+.|..+. ........|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~-------------~~~~~~~~d 41 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENR-------------RISATEVFD 41 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCC-------------CCCCCCCCC
Confidence 799999999999999999764 22222222110 001234557
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCC
Q 040503 224 EEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGS 303 (767)
Q Consensus 224 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~ 303 (767)
..+|||||||||+|+.. .+.+.||||+|+|+.+|++...+ +..++++++|+|+++.+++|||||||.
T Consensus 42 ~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~----~~~~~~~~ai~~a~~~~~~Vin~S~g~ 108 (254)
T cd07490 42 AGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGG----GSLSQIIAGMEWAVEKDADVVSMSLGG 108 (254)
T ss_pred CCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCC----CcHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 88999999999999863 23347999999999999998765 788999999999999999999999998
Q ss_pred CCccCcccHHHHHHHHHHh-CCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeecccc
Q 040503 304 IAREHLKNTIAIGSFHAMM-NGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGL 382 (767)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 382 (767)
.... .+.+..+++.+.+ +|++||+||||+|......+...+++|+|||++.+.........
T Consensus 109 ~~~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~---------------- 170 (254)
T cd07490 109 TYYS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF---------------- 170 (254)
T ss_pred CCCC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC----------------
Confidence 7432 5556656555554 69999999999998766666778999999997654310000000
Q ss_pred CCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCccccc
Q 040503 383 LNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLN 462 (767)
Q Consensus 383 ~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~ 462 (767)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecC
Q 040503 463 MVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTE 542 (767)
Q Consensus 463 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 542 (767)
........+.+|.. .....||||+|||.+|+++...
T Consensus 171 -------------------------------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~ 206 (254)
T cd07490 171 -------------------------------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQG 206 (254)
T ss_pred -------------------------------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccC
Confidence 00122223334433 2557899999999999986532
Q ss_pred CCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 543 ASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 543 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
.. ....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 207 ~~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 207 AN---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CC---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11 1237999999999999999999999999999999999999999984
No 22
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=6.1e-42 Score=359.18 Aligned_cols=241 Identities=32% Similarity=0.391 Sum_probs=201.6
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|..+ +|+||+|+|||+||+++||+|... ++...+.+.++
T Consensus 19 ~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~~------------ 60 (260)
T cd07484 19 PKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVDN------------ 60 (260)
T ss_pred HHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccCC------------
Confidence 5789988 999999999999999999998432 12222233221
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..+|||||||||++...++ ..+.|+||+|+|+.+|+++..+ .+...+++++|+++++.
T Consensus 61 -----~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~ 124 (260)
T cd07484 61 -----DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANG---SGSLADIANGIRYAADK 124 (260)
T ss_pred -----CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHC
Confidence 1235578899999999999875332 2348999999999999998765 47888999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeE
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVI 372 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (767)
|++|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 125 ~~~iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------- 186 (260)
T cd07484 125 GAKVINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD--------------- 186 (260)
T ss_pred CCeEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC---------------
Confidence 9999999999873 4456777778888999999999999998877778888999999985432
Q ss_pred eeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEec
Q 040503 373 KGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVS 452 (767)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~ 452 (767)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeC
Q 040503 453 SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532 (767)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 532 (767)
+..+.||++|+.. |++||
T Consensus 187 ------------------------------------------------------~~~~~~s~~g~~~--------~~~ap 204 (260)
T cd07484 187 ------------------------------------------------------DKRASFSNYGKWV--------DVSAP 204 (260)
T ss_pred ------------------------------------------------------CCcCCcCCCCCCc--------eEEeC
Confidence 3567889999887 99999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAE 601 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~ 601 (767)
|.+|+++.+.. .|..++|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 205 G~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 205 GGGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCCcEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999987652 799999999999999999999999999 99999999999999864
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-42 Score=362.99 Aligned_cols=207 Identities=29% Similarity=0.372 Sum_probs=167.9
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh---------
Q 040503 220 TGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI--------- 290 (767)
Q Consensus 220 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~--------- 290 (767)
...+..+|||||||||+|...++ .| +.||||+|+|+.+|+++..+ ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~---~~-----~~GvAp~a~i~~~~v~~~~~----~~~~~i~~a~~~a~~~~~~~~~~ 133 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG---VG-----VAGVAWGARILPVRVLGKCG----GTLSDIVDGMRWAAGLPVPGVPV 133 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC---CC-----ceeecCCCeEEEEEEecCCC----CcHHHHHHHHHHHhccCcCCCcc
Confidence 45678899999999999986422 22 38999999999999998776 57889999999998
Q ss_pred -hcCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcccCCCceEEeccccCcceeeeeEEecC
Q 040503 291 -HDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD-GSVENVAPWILTVGASTTDREFTSYVTLGN 368 (767)
Q Consensus 291 -~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 368 (767)
.++++|||||||.... ....+..++..+.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 134 ~~~~~~Iin~S~G~~~~--~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 200 (285)
T cd07496 134 NPNPAKVINLSLGGDGA--CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR----------- 200 (285)
T ss_pred cCCCCeEEEeCCCCCCC--CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-----------
Confidence 4579999999998732 145677788889999999999999999765 4455677899999986432
Q ss_pred ceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEE
Q 040503 369 KMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGM 448 (767)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~ 448 (767)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccce
Q 040503 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPD 528 (767)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 528 (767)
+.++.||++||.. |
T Consensus 201 ----------------------------------------------------------~~~~~~S~~g~~v--------d 214 (285)
T cd07496 201 ----------------------------------------------------------GQRASYSNYGPAV--------D 214 (285)
T ss_pred ----------------------------------------------------------CCcccccCCCCCC--------C
Confidence 4578899999987 9
Q ss_pred EEeCCCcEEEeecCCCCCC--CCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 529 VTAPGVDIIAAFTEASGPS--PDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 529 I~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
|+|||.+|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 215 i~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 215 VSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred EEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999998876532110 00111223478999999999999999999999999999999999999976
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-41 Score=359.65 Aligned_cols=250 Identities=27% Similarity=0.330 Sum_probs=181.9
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|+.+++|+||+||||||||+..|| |...++ .+...+..+
T Consensus 11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------------------------~~~~~~~~~------------ 52 (298)
T cd07494 11 TRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------------------------QVRVVLAPG------------ 52 (298)
T ss_pred hHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------------------------cceeecCCC------------
Confidence 589999999999999999999999888 754311 000011000
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
......|+.|||||||+++ .||||+|+|+.+|++++ ..+++++||+||+++
T Consensus 53 ----~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~-------~~~~~~~ai~~a~~~ 103 (298)
T cd07494 53 ----ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP-------DLVNSVGAFKKAISL 103 (298)
T ss_pred ----CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC-------CcHHHHHHHHHHHhc
Confidence 0124567889999999865 47899999999999863 456789999999999
Q ss_pred CCcEEEeccCCCCcc----------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeee
Q 040503 293 GVDVISASLGSIARE----------HLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTS 362 (767)
Q Consensus 293 gvdVIn~SlG~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~ 362 (767)
+++|||||||..... .....+..++.+|.++|++||+||||++. .+++..|++|+|||++.+..
T Consensus 104 g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~--- 177 (298)
T cd07494 104 SPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED--- 177 (298)
T ss_pred CCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---
Confidence 999999999986211 12345778888899999999999999874 45677899999999754320
Q ss_pred eEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHH
Q 040503 363 YVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQ 442 (767)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 442 (767)
+. ..
T Consensus 178 ------g~------------------~~---------------------------------------------------- 181 (298)
T cd07494 178 ------GA------------------RR---------------------------------------------------- 181 (298)
T ss_pred ------Cc------------------cc----------------------------------------------------
Confidence 00 00
Q ss_pred cCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCC
Q 040503 443 AGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDP 522 (767)
Q Consensus 443 ~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 522 (767)
.....+.|++. ..+
T Consensus 182 --------------------------------------------------------------~~~~~~~~~s~----~~~ 195 (298)
T cd07494 182 --------------------------------------------------------------ASSYASGFRSK----IYP 195 (298)
T ss_pred --------------------------------------------------------------ccccccCcccc----cCC
Confidence 00001111111 125
Q ss_pred CcccceE----------------EeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCC
Q 040503 523 AIFKPDV----------------TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWS 586 (767)
Q Consensus 523 ~~~KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 586 (767)
++.|||+ +|||..|.++...... .......|..++|||||||||||++|||+|++|.|+
T Consensus 196 g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~ 270 (298)
T cd07494 196 GRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLS 270 (298)
T ss_pred CCccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCC
Confidence 6677777 4799998766532100 001124799999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccc
Q 040503 587 PAAIKSAIMTTARAED 602 (767)
Q Consensus 587 p~~ik~~L~~TA~~~~ 602 (767)
+++||.+|++||+++.
T Consensus 271 ~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 271 PERARSLLNKTARDVT 286 (298)
T ss_pred HHHHHHHHHHhCcccC
Confidence 9999999999998763
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-41 Score=352.15 Aligned_cols=240 Identities=26% Similarity=0.318 Sum_probs=190.0
Q ss_pred eEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCC
Q 040503 145 VIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDE 224 (767)
Q Consensus 145 V~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 224 (767)
|+|||||+||+++||+|.+.. ++...+.+... .....|.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~------------------------~~~~~~~~~~~-----------------~~~~~~~ 39 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP------------------------KLVPGWNFVSN-----------------NDPTSDI 39 (242)
T ss_pred CEEEEecCCCCCCChhhccCc------------------------CccCCccccCC-----------------CCCCCCC
Confidence 689999999999999998630 01111111100 1134678
Q ss_pred CCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCCC
Q 040503 225 EGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSI 304 (767)
Q Consensus 225 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~~ 304 (767)
.+|||||||||+|+..++ ..+.||||+|+|+.+|++...+ .+...++.++++|+++.+++|||||||..
T Consensus 40 ~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Vin~S~g~~ 108 (242)
T cd07498 40 DGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLG---YAYWSDIAQAITWAADNGADVISNSWGGS 108 (242)
T ss_pred CCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHCCCeEEEeccCCC
Confidence 999999999999986322 2348999999999999998765 47889999999999999999999999987
Q ss_pred Cc-cCcccHHHHHHHHHHh-CCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeecccc
Q 040503 305 AR-EHLKNTIAIGSFHAMM-NGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGL 382 (767)
Q Consensus 305 ~~-~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 382 (767)
.. ......+..++..+.+ +|++||+||||+|......++..+++|+|||++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------- 163 (242)
T cd07498 109 DSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------- 163 (242)
T ss_pred CCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------
Confidence 32 2345667777778888 99999999999998766667778999999996532
Q ss_pred CCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCccccc
Q 040503 383 LNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLN 462 (767)
Q Consensus 383 ~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~ 462 (767)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecC
Q 040503 463 MVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTE 542 (767)
Q Consensus 463 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 542 (767)
+.++.||++||.. |++|||.++......
T Consensus 164 --------------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~ 191 (242)
T cd07498 164 --------------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTG 191 (242)
T ss_pred --------------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcc
Confidence 3567899999987 999999999887544
Q ss_pred CCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 543 ASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 543 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
.... .......|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 192 ~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 192 RGSA----GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cccc----ccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2111 11123478899999999999999999999999999999999999976
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.8e-41 Score=360.66 Aligned_cols=279 Identities=27% Similarity=0.340 Sum_probs=201.1
Q ss_pred cCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCC
Q 040503 138 KARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQN 217 (767)
Q Consensus 138 ~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (767)
++++|+||+|||||+|||++||+|.+.... . ....++++.....+.
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~---~~~~~~~~~~~~~~~------------------- 47 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------K---TNLFHRKIVRYDSLS------------------- 47 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------c---CccCcccEEEeeccC-------------------
Confidence 578999999999999999999999764210 0 001223333222211
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEE
Q 040503 218 LTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVI 297 (767)
Q Consensus 218 ~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVI 297 (767)
....|..+|||||||||+|...+.... ..+.||||+|+|+.+|+++..+. .....++..+++++.+.+++||
T Consensus 48 -~~~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vi 119 (293)
T cd04842 48 -DTKDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGN--LSSPPDLNKLFSPMYDAGARIS 119 (293)
T ss_pred -CCCCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCcc--ccCCccHHHHHHHHHHhCCEEE
Confidence 122278999999999999986543211 13489999999999999887642 3567778999999999999999
Q ss_pred EeccCCCCccCcccHHHHHHHHHH-h-CCCEEEEecCCCCCCCC---CcccCCCceEEeccccCcceeeeeEEecCceeE
Q 040503 298 SASLGSIAREHLKNTIAIGSFHAM-M-NGIVSVAAAGNSGPDDG---SVENVAPWILTVGASTTDREFTSYVTLGNKMVI 372 (767)
Q Consensus 298 n~SlG~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (767)
|||||..... .......++.++. + +|++||+||||+|.... ..+...+++|+|||++......
T Consensus 120 n~S~G~~~~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~----------- 187 (293)
T cd04842 120 SNSWGSPVNN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN----------- 187 (293)
T ss_pred eccCCCCCcc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc-----------
Confidence 9999988432 1233344444443 3 79999999999997665 4556689999999977643100
Q ss_pred eeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEec
Q 040503 373 KGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVS 452 (767)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~ 452 (767)
...|..
T Consensus 188 ----------------------------------~~~~~~---------------------------------------- 193 (293)
T cd04842 188 ----------------------------------GEGGLG---------------------------------------- 193 (293)
T ss_pred ----------------------------------cccccc----------------------------------------
Confidence 000000
Q ss_pred cCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeC
Q 040503 453 SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532 (767)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 532 (767)
.......++.||++||+. ++++||||+||
T Consensus 194 -------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~Ap 222 (293)
T cd04842 194 -------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAP 222 (293)
T ss_pred -------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECC
Confidence 001135789999999998 89999999999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH-----P---DWSPAAIKSAIMTTAR 599 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~~sp~~ik~~L~~TA~ 599 (767)
|.+|+++...... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 223 G~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 223 GTGILSARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCeEeccCCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 9999999754200 011122478999999999999999999999985 4 6677899999999984
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.7e-41 Score=358.05 Aligned_cols=265 Identities=27% Similarity=0.300 Sum_probs=184.8
Q ss_pred ccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCC
Q 040503 137 KKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQ 216 (767)
Q Consensus 137 ~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 216 (767)
..+++|+||+|||||+|||++||+|.+.. +....|.+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~--------------------------~~~~~~~~----------------- 38 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD--------------------------ITTKSFVG----------------- 38 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc--------------------------ccCcccCC-----------------
Confidence 35789999999999999999999997641 11112211
Q ss_pred CCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcE
Q 040503 217 NLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDV 296 (767)
Q Consensus 217 ~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdV 296 (767)
...+.|..||||||||||+|+..+ +...||||+|+|+.+|++.... .+....+++||+||++.|++|
T Consensus 39 -~~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~---~~~~~~i~~ai~~a~~~g~~V 105 (297)
T cd07480 39 -GEDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDG---GGGDGGILAGIQWAVANGADV 105 (297)
T ss_pred -CCCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCC---CCcHHHHHHHHHHHHHcCCCE
Confidence 112467899999999999998633 2347999999999999997665 467778999999999999999
Q ss_pred EEeccCCCCc----------cCcccHHHHHHHHH---------------HhCCCEEEEecCCCCCCCCCccc-----CCC
Q 040503 297 ISASLGSIAR----------EHLKNTIAIGSFHA---------------MMNGIVSVAAAGNSGPDDGSVEN-----VAP 346 (767)
Q Consensus 297 In~SlG~~~~----------~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~~p 346 (767)
||||||.... ......++.....+ .++|++||+||||+|........ ..+
T Consensus 106 in~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~ 185 (297)
T cd07480 106 ISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACP 185 (297)
T ss_pred EEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccc
Confidence 9999998531 11112222222233 67999999999999865333211 123
Q ss_pred ceEEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEE
Q 040503 347 WILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILI 426 (767)
Q Consensus 347 ~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 426 (767)
++++|+++...
T Consensus 186 ~~~~V~~V~~~--------------------------------------------------------------------- 196 (297)
T cd07480 186 SAMGVAAVGAL--------------------------------------------------------------------- 196 (297)
T ss_pred cccEEEEECCC---------------------------------------------------------------------
Confidence 33333332211
Q ss_pred EecCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCC
Q 040503 427 CYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPS 506 (767)
Q Consensus 427 ~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 506 (767)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCC
Q 040503 507 RMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWS 586 (767)
Q Consensus 507 ~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 586 (767)
+....|++..+ ....||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.++
T Consensus 197 ~~~~~~~~~~~----~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~ 259 (297)
T cd07480 197 GRTGNFSAVAN----FSNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAG 259 (297)
T ss_pred CCCCCccccCC----CCCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccC
Confidence 11112222222 2235789999999999988763 899999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCcc
Q 040503 587 PAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPN 630 (767)
Q Consensus 587 p~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~ 630 (767)
+.+++.+|++........ ..........+|+|++++.
T Consensus 260 ~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 260 GRALAALLQARLTAARTT-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHHHHHHhhcccC-------CCCCCCChhhcCCceeecC
Confidence 888888887432221000 1122345678999998875
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-41 Score=352.70 Aligned_cols=244 Identities=20% Similarity=0.192 Sum_probs=176.8
Q ss_pred ccccccCC-CCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCC
Q 040503 133 DSAWKKAR-FGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPD 211 (767)
Q Consensus 133 ~~~~~~~~-~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (767)
..+|+... .|+||+|+|||+|||.+||+|.++.. . ...
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~--------------------------~---~~~------------ 43 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGI--------------------------T---LIS------------ 43 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhccccc--------------------------c---ccC------------
Confidence 57898754 59999999999999999999986410 0 000
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh
Q 040503 212 AVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH 291 (767)
Q Consensus 212 ~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~ 291 (767)
...+.|+.+|||||||||+|..+ .+| +.||||+|+|+.+|++. .++++++|.+|++
T Consensus 44 ------~~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~---------~~~~~~ai~~A~~ 99 (277)
T cd04843 44 ------GLTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR---------VSNTADAILDAAD 99 (277)
T ss_pred ------CCCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC---------CCCHHHHHHHHHh
Confidence 01145788999999999998731 123 38999999999999975 2234455555554
Q ss_pred ----cCCcEEEeccCCCCcc------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcc-------------cCCCce
Q 040503 292 ----DGVDVISASLGSIARE------HLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVE-------------NVAPWI 348 (767)
Q Consensus 292 ----~gvdVIn~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~v 348 (767)
.++.+||||||..... .....+..++.++.++|+++|+||||++....... ...|++
T Consensus 100 ~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~v 179 (277)
T cd04843 100 YLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGA 179 (277)
T ss_pred ccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCe
Confidence 4578899999986321 12334556777888999999999999986522111 123578
Q ss_pred EEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEe
Q 040503 349 LTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY 428 (767)
Q Consensus 349 itVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~ 428 (767)
|+|||++.+.
T Consensus 180 I~VgA~~~~~---------------------------------------------------------------------- 189 (277)
T cd04843 180 IMVGAGSSTT---------------------------------------------------------------------- 189 (277)
T ss_pred EEEEeccCCC----------------------------------------------------------------------
Confidence 8888754321
Q ss_pred cCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCc
Q 040503 429 GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRM 508 (767)
Q Consensus 429 ~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 508 (767)
...
T Consensus 190 -----------------------------------------------------------------------------~~~ 192 (277)
T cd04843 190 -----------------------------------------------------------------------------GHT 192 (277)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 013
Q ss_pred eecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH----h-CC
Q 040503 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT----L-HP 583 (767)
Q Consensus 509 ~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P 583 (767)
++.||++||.. ||.|||++|+++....... ........|..++|||||||||||++|||++ + +|
T Consensus 193 ~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p 261 (277)
T cd04843 193 RLAFSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGT 261 (277)
T ss_pred cccccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCC
Confidence 78999999987 9999999999998764311 0111122457899999999999999999975 3 49
Q ss_pred CCCHHHHHHHHHhccc
Q 040503 584 DWSPAAIKSAIMTTAR 599 (767)
Q Consensus 584 ~~sp~~ik~~L~~TA~ 599 (767)
+|+|+|||++|+.|+.
T Consensus 262 ~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 262 PLTPIEMRELLTATGT 277 (277)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 9999999999999973
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-40 Score=346.95 Aligned_cols=250 Identities=29% Similarity=0.389 Sum_probs=191.0
Q ss_pred CceEEEEecccCCCCCCCccCCCCCCCCCCcccc---ccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCC
Q 040503 143 EDVIIANVDSGVWPESKSFADDGMGPIPSKWKGI---CQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLT 219 (767)
Q Consensus 143 ~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~---~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (767)
+||+|||||||||++||+|.+. .|... +..+. ..+....+.. ..+|+.. ....
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~-----------~~~~ 57 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGI---DDDGNGYVDD---IYGWNFV-----------NNDN 57 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCc---ccCCCCcccC---CCccccc-----------CCCC
Confidence 6899999999999999999875 23321 11110 0000000000 0011111 1134
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEe
Q 040503 220 TGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISA 299 (767)
Q Consensus 220 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~ 299 (767)
++.|..+|||||||||+|...++. .+.|+||+|+|+.+|++...+ .+...+++++|+++++.+++|||+
T Consensus 58 ~~~d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~---~~~~~~~~~a~~~a~~~~~~vin~ 126 (259)
T cd07473 58 DPMDDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADG---SGTTSDAIKAIDYAVDMGAKIINN 126 (259)
T ss_pred CCCCCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCeEEEe
Confidence 567889999999999999864332 248999999999999998776 488899999999999999999999
Q ss_pred ccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC---CCccc--CCCceEEeccccCcceeeeeEEecCceeEee
Q 040503 300 SLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD---GSVEN--VAPWILTVGASTTDREFTSYVTLGNKMVIKG 374 (767)
Q Consensus 300 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g 374 (767)
|||.... ...+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.+
T Consensus 127 S~G~~~~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~----------------- 186 (259)
T cd07473 127 SWGGGGP---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN----------------- 186 (259)
T ss_pred CCCCCCC---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------
Confidence 9998732 56677788889999999999999998662 22222 34789999985432
Q ss_pred eeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccC
Q 040503 375 ASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSK 454 (767)
Q Consensus 375 ~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~ 454 (767)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCC
Q 040503 455 ESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGV 534 (767)
Q Consensus 455 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 534 (767)
+.++.||++||. +||+.|||.
T Consensus 187 ----------------------------------------------------~~~~~~s~~g~~-------~~~~~apG~ 207 (259)
T cd07473 187 ----------------------------------------------------DALASFSNYGKK-------TVDLAAPGV 207 (259)
T ss_pred ----------------------------------------------------CCcCcccCCCCC-------CcEEEeccC
Confidence 355678999985 359999999
Q ss_pred cEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 535 DIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 535 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
++++..+.. .|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 208 ~~~~~~~~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 208 DILSTSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred CeEeccCCC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 999966542 7999999999999999999999999999999999999999984
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.8e-40 Score=341.48 Aligned_cols=227 Identities=32% Similarity=0.471 Sum_probs=187.6
Q ss_pred ceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCC
Q 040503 144 DVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRD 223 (767)
Q Consensus 144 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 223 (767)
||+|||||+||+++||+|.+. +.....|.... .....|
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~~----------------~~~~~~ 38 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGDD----------------NNDYQD 38 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCCC----------------CCCCCC
Confidence 799999999999999999764 12222222110 024557
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCC
Q 040503 224 EEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGS 303 (767)
Q Consensus 224 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~ 303 (767)
..+|||||||||++.... ..+.|+||+|+|+.+|+++..+ .+...+++++++++++.|++|||||||.
T Consensus 39 ~~~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~---~~~~~~l~~ai~~a~~~~~~Vin~S~g~ 106 (229)
T cd07477 39 GNGHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDG---SGTYSDIIAGIEWAIENGMDIINMSLGG 106 (229)
T ss_pred CCCCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 889999999999997532 1348999999999999998776 3677899999999999999999999998
Q ss_pred CCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--ccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccc
Q 040503 304 IAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV--ENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKG 381 (767)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 381 (767)
.. ....+..++..+.++|+++|+||||++...... ++..+++|+||+++.+
T Consensus 107 ~~---~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 107 PS---DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred CC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 63 234566677788899999999999999776554 6678999999986532
Q ss_pred cCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccc
Q 040503 382 LLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVL 461 (767)
Q Consensus 382 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~ 461 (767)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeec
Q 040503 462 NMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFT 541 (767)
Q Consensus 462 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 541 (767)
+.++.||++|+.. |+.|||.+|+++++
T Consensus 160 ---------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~ 186 (229)
T cd07477 160 ---------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYP 186 (229)
T ss_pred ---------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecC
Confidence 3556789999976 99999999999987
Q ss_pred CCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 542 EASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 542 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
.. .|..++|||||||+|||++|||+|++|.++|++||++|++|
T Consensus 187 ~~-------------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 187 NN-------------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred CC-------------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 63 78999999999999999999999999999999999999986
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-40 Score=342.07 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=120.6
Q ss_pred CCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCC
Q 040503 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTG 221 (767)
Q Consensus 142 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (767)
+++|+|||||||||++||+|.++ +...+.|....... .......
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~~~~----------~~~~~~~ 45 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYEGDG----------NKVSPYY 45 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCCCCc----------ccCCCCC
Confidence 78999999999999999999753 22222222210000 0001123
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCC---CCCChhHHHHHHHHhhhcCCcEEE
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNEN---DSCASADILSAYDLAIHDGVDVIS 298 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~---~~~~~~~i~~aid~a~~~gvdVIn 298 (767)
.|..||||||||||+ |+||+|+|+.+|+++..+.. ..++...+++||+||+++|+||||
T Consensus 46 ~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 46 VSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 578899999999996 56999999999999865421 135678899999999999999999
Q ss_pred eccCCCCcc---CcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-Cc--ccCCCceEEeccccC
Q 040503 299 ASLGSIARE---HLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDG-SV--ENVAPWILTVGASTT 356 (767)
Q Consensus 299 ~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~~p~vitVgA~~~ 356 (767)
||||..... .....+..++.+|.++|++||+||||+|.... .+ +...|++|+|||++.
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 999987421 12567888888999999999999999997654 33 245689999999654
No 32
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-39 Score=331.96 Aligned_cols=222 Identities=24% Similarity=0.279 Sum_probs=174.8
Q ss_pred ceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCC
Q 040503 144 DVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRD 223 (767)
Q Consensus 144 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 223 (767)
||+|||||||||++||+|.+.- ...+.+..+ . .........|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~--------------------------~~~~~~~~~-~-----------~~~~~~~~~d 42 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLA--------------------------LDGEVTIDL-E-----------IIVVSAEGGD 42 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccc--------------------------ccccccccc-c-----------cccCCCCCCC
Confidence 7999999999999999998641 111111100 0 0001234567
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCC
Q 040503 224 EEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGS 303 (767)
Q Consensus 224 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~ 303 (767)
..||||||||||++. +|+++|+.+|+++..+ .+..+.+++||+|++++|++|||||||.
T Consensus 43 ~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~v~Vin~S~G~ 101 (222)
T cd07492 43 KDGHGTACAGIIKKY------------------APEAEIGSIKILGEDG---RCNSFVLEKALRACVENDIRIVNLSLGG 101 (222)
T ss_pred CCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 899999999999865 6999999999998776 4888999999999999999999999998
Q ss_pred CCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccccC
Q 040503 304 IAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLL 383 (767)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 383 (767)
... .....+..++.++.++|+++|+||||++..... ++..+++|+||+.+.+.
T Consensus 102 ~~~-~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~------------------------- 154 (222)
T cd07492 102 PGD-RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD------------------------- 154 (222)
T ss_pred CCC-CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC-------------------------
Confidence 742 233556777888889999999999999865333 56678999999854321
Q ss_pred CCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccccc
Q 040503 384 NDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNM 463 (767)
Q Consensus 384 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~ 463 (767)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCC
Q 040503 464 VHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEA 543 (767)
Q Consensus 464 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 543 (767)
.. +.+++. +|+.|||.+|+++.+..
T Consensus 155 --------------------------------------------~~---~~~~~~--------~~~~apg~~i~~~~~~~ 179 (222)
T cd07492 155 --------------------------------------------PK---SFWYIY--------VEFSADGVDIIAPAPHG 179 (222)
T ss_pred --------------------------------------------Cc---ccccCC--------ceEEeCCCCeEeecCCC
Confidence 01 111333 49999999999988763
Q ss_pred CCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 544 SGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 544 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 180 -------------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 -------------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -------------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999984
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=3.3e-40 Score=350.43 Aligned_cols=274 Identities=32% Similarity=0.475 Sum_probs=206.5
Q ss_pred EEEEecccCCCCCCCcc-CCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCC
Q 040503 146 IIANVDSGVWPESKSFA-DDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDE 224 (767)
Q Consensus 146 ~VgVIDtGid~~Hp~f~-~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 224 (767)
+|||||+|||++||+|. .+ + ...++.+.+.|.++. .......|.
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~--------------------~~~~~~~~~~~~~~~--------------~~~~~~~~~ 45 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F--------------------IWSKVPGGYNFVDGN--------------PNPSPSDDD 45 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E--------------------EEEEEEEEEETTTTB--------------STTTSSSTS
T ss_pred CEEEEcCCcCCCChhHccCC-c--------------------ccccccceeeccCCC--------------CCcCccccC
Confidence 69999999999999998 32 0 011122233333321 113355678
Q ss_pred CCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh-hcCCcEEEeccCC
Q 040503 225 EGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI-HDGVDVISASLGS 303 (767)
Q Consensus 225 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~-~~gvdVIn~SlG~ 303 (767)
.+|||||||||+|.. . .. .....|+||+|+|+.+|++...+ .....++++|++++ +.+++|||||||.
T Consensus 46 ~~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~----~~~~~~~~ai~~~~~~~~~~Vin~S~G~ 114 (282)
T PF00082_consen 46 NGHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSG----GTSSDLIEAIEYAVKNDGVDVINLSFGS 114 (282)
T ss_dssp SSHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTS----EEHHHHHHHHHHHHHHTTSSEEEECEEB
T ss_pred CCccchhhhhccccc-c-cc-----ccccccccccccccccccccccc----cccccccchhhhhhhccCCccccccccc
Confidence 899999999999986 2 11 12338999999999999977664 67888999999999 8899999999988
Q ss_pred C--C-ccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC---cccCCCceEEeccccCcceeeeeEEecCceeEeeeee
Q 040503 304 I--A-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS---VENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASV 377 (767)
Q Consensus 304 ~--~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~ 377 (767)
. . .....+.+..+++.+.++|+++|+||||+|+.... .+...+++|+||+++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~-------------------- 174 (282)
T PF00082_consen 115 NSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN-------------------- 174 (282)
T ss_dssp EESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT--------------------
T ss_pred cccccccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc--------------------
Confidence 2 1 22234456666778889999999999999876553 33445888999985421
Q ss_pred eccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCC
Q 040503 378 SQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESG 457 (767)
Q Consensus 378 ~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~ 457 (767)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEE
Q 040503 458 NKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDII 537 (767)
Q Consensus 458 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 537 (767)
+.++.||++|+.. .++++||||+|||.+|+
T Consensus 175 -------------------------------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~ 204 (282)
T PF00082_consen 175 -------------------------------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNIL 204 (282)
T ss_dssp -------------------------------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEE
T ss_pred -------------------------------------------------ccccccccccccc-ccccccccccccccccc
Confidence 3567899997543 27899999999999999
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCC
Q 040503 538 AAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKA 617 (767)
Q Consensus 538 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 617 (767)
++++.... ..|..++|||||||+|||++|||+|++|+|++.+||.+|++||++....+ ...
T Consensus 205 ~~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~ 265 (282)
T PF00082_consen 205 SAVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEG 265 (282)
T ss_dssp EEETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSS
T ss_pred cccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCC
Confidence 98876421 25888999999999999999999999999999999999999999875211 233
Q ss_pred CCCccCCCccCccCcCC
Q 040503 618 TPFAYGAGHVNPNSALD 634 (767)
Q Consensus 618 ~~~~~G~G~vd~~~A~~ 634 (767)
....||||++|+.+|++
T Consensus 266 ~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 266 YDNSYGWGLINAEKALN 282 (282)
T ss_dssp SHHHHTTSBE-HHHHHH
T ss_pred CCCCccCChhCHHHHhC
Confidence 45678999999999874
No 34
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.4e-39 Score=345.93 Aligned_cols=208 Identities=29% Similarity=0.307 Sum_probs=154.8
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEE
Q 040503 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVIS 298 (767)
Q Consensus 219 ~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn 298 (767)
....|..||||||||+|+|+.. ..||||+|+|+.+|+++..+ .....+++++|++|++++++|||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~~~vin 111 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCG---SAESSWIIKAIIDAADDGVDVIN 111 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCC---CcCHHHHHHHHHHHHHCCCCEEE
Confidence 3456789999999999998742 14999999999999998776 35888999999999999999999
Q ss_pred eccCCCCccC--------cccHHHHHHHHHHhCCCEEEEecCCCCCCCCC----------------------cccCCCce
Q 040503 299 ASLGSIAREH--------LKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS----------------------VENVAPWI 348 (767)
Q Consensus 299 ~SlG~~~~~~--------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------------~~~~~p~v 348 (767)
||||...... ....+..++..+.++|++||+||||+|..... .+...+++
T Consensus 112 ~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v 191 (294)
T cd07482 112 LSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNV 191 (294)
T ss_pred eCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCce
Confidence 9999863211 12346667777889999999999999965321 11223444
Q ss_pred EEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEe
Q 040503 349 LTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY 428 (767)
Q Consensus 349 itVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~ 428 (767)
|+|||++
T Consensus 192 i~Vga~~------------------------------------------------------------------------- 198 (294)
T cd07482 192 ITVSATD------------------------------------------------------------------------- 198 (294)
T ss_pred EEEEeeC-------------------------------------------------------------------------
Confidence 5554432
Q ss_pred cCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCc
Q 040503 429 GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRM 508 (767)
Q Consensus 429 ~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 508 (767)
..+.
T Consensus 199 ----------------------------------------------------------------------------~~~~ 202 (294)
T cd07482 199 ----------------------------------------------------------------------------NNGN 202 (294)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 2356
Q ss_pred eecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCC---CCC------CCCCCCccceeeecccccchhhHHHHHHHHH
Q 040503 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASG---PSP------DETHKRRIPYIMMSGTSMSCPHVAGIVGLVK 579 (767)
Q Consensus 509 ~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 579 (767)
++.||++|+.. +|++|||.++......... ... .......+.|..++|||||||+|||++|||+
T Consensus 203 ~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~ 275 (294)
T cd07482 203 LSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALII 275 (294)
T ss_pred cCccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHH
Confidence 77899998754 4999999998532211100 000 0001234578999999999999999999999
Q ss_pred HhCCCCCH-HHHHHHHHhc
Q 040503 580 TLHPDWSP-AAIKSAIMTT 597 (767)
Q Consensus 580 q~~P~~sp-~~ik~~L~~T 597 (767)
|++|.+++ .|||++|++|
T Consensus 276 ~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 276 DKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred HHCCCCCcHHHHHHHHhhC
Confidence 99999999 9999999986
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.3e-39 Score=348.33 Aligned_cols=247 Identities=20% Similarity=0.214 Sum_probs=181.7
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|..+++|+||+|+|||||||+.||+|.+.... ...+.|.....
T Consensus 29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~---------- 74 (297)
T cd04059 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDNDP---------- 74 (297)
T ss_pred HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCCC----------
Confidence 68999999999999999999999999999764110 01111221100
Q ss_pred CCCCCCCCC--CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh
Q 040503 213 VIPQNLTTG--RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI 290 (767)
Q Consensus 213 ~~~~~~~~~--~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~ 290 (767)
...+ .|..||||||||||+|+..+.. ...||||+|+|+.+|++... .....+..++.++.
T Consensus 75 -----~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-----~~~~~~~~~~~~~~ 136 (297)
T cd04059 75 -----DPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-----VTDVVEAESLGLNP 136 (297)
T ss_pred -----CCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-----cccHHHHHHHhccc
Confidence 1112 2788999999999999853221 23899999999999998754 33445566666655
Q ss_pred hcCCcEEEeccCCCCcc----CcccHHHHHHHHHHh-----CCCEEEEecCCCCCCCCC--c--ccCCCceEEeccccCc
Q 040503 291 HDGVDVISASLGSIARE----HLKNTIAIGSFHAMM-----NGIVSVAAAGNSGPDDGS--V--ENVAPWILTVGASTTD 357 (767)
Q Consensus 291 ~~gvdVIn~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~--~--~~~~p~vitVgA~~~~ 357 (767)
+ .++|||||||..... ........++.++.+ +|++||+||||+|..... . ....|++|+|||++.+
T Consensus 137 ~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~ 215 (297)
T cd04059 137 D-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN 215 (297)
T ss_pred C-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC
Confidence 4 469999999987321 122334455555553 699999999999973222 1 1346889999985432
Q ss_pred ceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHH
Q 040503 358 REFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKG 437 (767)
Q Consensus 358 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 437 (767)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCC
Q 040503 438 QWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGP 517 (767)
Q Consensus 438 ~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp 517 (767)
+.++.||++|+
T Consensus 216 ---------------------------------------------------------------------g~~~~~s~~g~ 226 (297)
T cd04059 216 ---------------------------------------------------------------------GVRASYSEVGS 226 (297)
T ss_pred ---------------------------------------------------------------------CCCcCCCCCCC
Confidence 45678999999
Q ss_pred CCCCCCcccceEEeCCCc-------EEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHH
Q 040503 518 NMIDPAIFKPDVTAPGVD-------IIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAI 590 (767)
Q Consensus 518 ~~~~~~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~i 590 (767)
.. ++.|||.. |+++..... ...|..++|||||||+|||++|||+|+||+|++.||
T Consensus 227 ~~--------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v 288 (297)
T cd04059 227 SV--------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDV 288 (297)
T ss_pred cE--------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHH
Confidence 88 99999987 666654410 126788999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 040503 591 KSAIMTTAR 599 (767)
Q Consensus 591 k~~L~~TA~ 599 (767)
|++|++||+
T Consensus 289 ~~~L~~TA~ 297 (297)
T cd04059 289 QHILALTAR 297 (297)
T ss_pred HHHHHHhcC
Confidence 999999984
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=2.6e-38 Score=332.97 Aligned_cols=244 Identities=25% Similarity=0.309 Sum_probs=187.0
Q ss_pred CCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCC
Q 040503 141 FGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTT 220 (767)
Q Consensus 141 ~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (767)
+|+||+|+|||+||+++||+|.+.... ...+..... .....
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--------------------------~~~~~~~~~-------------~~~~~ 41 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--------------------------ASYYVAVND-------------AGYAS 41 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccc--------------------------ccccccccc-------------ccCCC
Confidence 699999999999999999999875110 000000000 00123
Q ss_pred CCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEec
Q 040503 221 GRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISAS 300 (767)
Q Consensus 221 ~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~S 300 (767)
..|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+. .+....+.++++++++.+++|||||
T Consensus 42 ~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vin~S 110 (267)
T cd04848 42 NGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGS--TFSDADIAAAYDFLAASGVRIINNS 110 (267)
T ss_pred CCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCc--ccchHHHHHHHHHHHhCCCeEEEcc
Confidence 457889999999999998633 34489999999999999987531 2677889999999999999999999
Q ss_pred cCCCCcc------------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcc---------cCCCceEEeccccCcce
Q 040503 301 LGSIARE------------HLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVE---------NVAPWILTVGASTTDRE 359 (767)
Q Consensus 301 lG~~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~~p~vitVgA~~~~~~ 359 (767)
||..... .....+...+..+.++|++||+||||++....... ...+++|+||+++.+.
T Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~- 189 (267)
T cd04848 111 WGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG- 189 (267)
T ss_pred CCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-
Confidence 9987422 14556677777888999999999999986543332 2357889999865432
Q ss_pred eeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHH
Q 040503 360 FTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQW 439 (767)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 439 (767)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceec--ccCCCC
Q 040503 440 AAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAF--FTSRGP 517 (767)
Q Consensus 440 ~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp 517 (767)
.... ||++|+
T Consensus 190 --------------------------------------------------------------------~~~~~~~s~~~~ 201 (267)
T cd04848 190 --------------------------------------------------------------------TIASYSYSNRCG 201 (267)
T ss_pred --------------------------------------------------------------------Ccccccccccch
Confidence 1222 477776
Q ss_pred CCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 518 NMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 518 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
.. ..++++|||.+|+++.+... ..|..++|||||||+|||++|||+|++|.+++++||++|++|
T Consensus 202 ~~-----~~~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~t 265 (267)
T cd04848 202 VA-----ANWCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTT 265 (267)
T ss_pred hh-----hhheeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 43 24579999999999887311 278899999999999999999999999999999999999999
Q ss_pred cc
Q 040503 598 AR 599 (767)
Q Consensus 598 A~ 599 (767)
|+
T Consensus 266 A~ 267 (267)
T cd04848 266 AT 267 (267)
T ss_pred cC
Confidence 84
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=322.69 Aligned_cols=360 Identities=24% Similarity=0.319 Sum_probs=261.5
Q ss_pred CCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccce------EEEEcceeeeEEEEcC-----HHHHHH
Q 040503 27 KKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSI------FHSYGRFINGFGAVLE-----EEHAKQ 95 (767)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i------~~~y~~~~~g~~~~~~-----~~~~~~ 95 (767)
+..|||.|+..-.. ..++.++++.+....-..=++ -..|-.-|.-+-++-. .-++++
T Consensus 49 e~EyIv~F~~y~~A------------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ier 116 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKPA------------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIER 116 (1033)
T ss_pred cceeEEEecccccc------------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeee
Confidence 45799999986543 345566666554222111111 1222223333333222 235799
Q ss_pred hhCCCCeEEEEeCcccccCcc------------CCCccc-CCc-------------cCCC-----------CCCcccccc
Q 040503 96 LENHPGVVSVFPDEGAKLHTT------------RSWDFL-GLE-------------KDNF-----------IPPDSAWKK 138 (767)
Q Consensus 96 l~~~~~V~~v~~~~~~~~~~~------------~s~~~~-g~~-------------~~~~-----------~~~~~~~~~ 138 (767)
|..+|.|+.|.|.+.+..-.. +.-.++ |.. ...+ -..+-+|..
T Consensus 117 Le~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~ 196 (1033)
T KOG4266|consen 117 LEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKK 196 (1033)
T ss_pred hhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhc
Confidence 999999999999887643210 000000 000 0000 012679999
Q ss_pred CCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCC
Q 040503 139 ARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNL 218 (767)
Q Consensus 139 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (767)
|++|++|+|||.|||+.-+||.|+.- .....+.+ .
T Consensus 197 GyTGa~VkvAiFDTGl~~~HPHFrnv---------------------------KERTNWTN------------------E 231 (1033)
T KOG4266|consen 197 GYTGAKVKVAIFDTGLRADHPHFRNV---------------------------KERTNWTN------------------E 231 (1033)
T ss_pred cccCCceEEEEeecccccCCccccch---------------------------hhhcCCcC------------------c
Confidence 99999999999999999999999742 11111111 1
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEE
Q 040503 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVIS 298 (767)
Q Consensus 219 ~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn 298 (767)
..-.|..||||.|||+|||.. ...|.||+++|++.|||.+.. -...+..++|++||+....||+|
T Consensus 232 ~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q---VSYTSWFLDAFNYAI~~kidvLN 296 (1033)
T KOG4266|consen 232 DTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ---VSYTSWFLDAFNYAIATKIDVLN 296 (1033)
T ss_pred cccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccce---eehhhHHHHHHHHHHhhhcceEe
Confidence 234478999999999999874 236889999999999998776 47889999999999999999999
Q ss_pred eccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCC--ceEEeccccCcceeeeeEEecCceeEeeee
Q 040503 299 ASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAP--WILTVGASTTDREFTSYVTLGNKMVIKGAS 376 (767)
Q Consensus 299 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~~~~~~~~g~~ 376 (767)
+|+|++ ++.+.++-.-+..+..++|++|.|+||+||-.++..+++. .||.||..+-
T Consensus 297 LSIGGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdf-------------------- 354 (1033)
T KOG4266|consen 297 LSIGGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDF-------------------- 354 (1033)
T ss_pred eccCCc--ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccc--------------------
Confidence 999998 4667777666667888999999999999999999888753 5666665321
Q ss_pred eeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCC
Q 040503 377 VSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKES 456 (767)
Q Consensus 377 ~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~ 456 (767)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1033)
T KOG4266|consen 355 -------------------------------------------------------------------------------- 354 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCC----CCCCcccceEEeC
Q 040503 457 GNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNM----IDPAIFKPDVTAP 532 (767)
Q Consensus 457 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~~~~KPDI~AP 532 (767)
.+.++.|||||-+. ...+|+||||++-
T Consensus 355 -------------------------------------------------dD~IA~FSSRGMtTWELP~GYGRmkpDiVtY 385 (1033)
T KOG4266|consen 355 -------------------------------------------------DDHIASFSSRGMTTWELPHGYGRMKPDIVTY 385 (1033)
T ss_pred -------------------------------------------------cchhhhhccCCcceeecCCcccccCCceEee
Confidence 36899999999654 2478999999999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH----hCCCCCHHHHHHHHHhccccccCCCCcc
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT----LHPDWSPAAIKSAIMTTARAEDSSNRPI 608 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~g~~~ 608 (767)
|.+|...... .+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.++...
T Consensus 386 G~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---- 448 (1033)
T KOG4266|consen 386 GRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---- 448 (1033)
T ss_pred ccccccCccc-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----
Confidence 9998876544 2778899999999999999999976 334578999999999999987532
Q ss_pred cCCCCCCCCCCCccCCCccCccCcCCC
Q 040503 609 LDQNTGEKATPFAYGAGHVNPNSALDP 635 (767)
Q Consensus 609 ~~~~~~~~~~~~~~G~G~vd~~~A~~~ 635 (767)
.-+.||+|++|+.++++-
T Consensus 449 ---------NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 449 ---------NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred ---------chhhccCcchhHHHHHHH
Confidence 247899999999988763
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-33 Score=288.66 Aligned_cols=192 Identities=19% Similarity=0.211 Sum_probs=141.9
Q ss_pred CCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHh--hhcCCcEEE
Q 040503 221 GRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLA--IHDGVDVIS 298 (767)
Q Consensus 221 ~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a--~~~gvdVIn 298 (767)
..|..||||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++|||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-------~~~~~~~~~i~~~~~~~~gv~VIN 90 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-------KSNNGQWQECLEAQQNGNNVKIIN 90 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-------CCCCccHHHHHHHHHhcCCceEEE
Confidence 447899999999999997 3567999998765522 1233466778887 667899999
Q ss_pred eccCCCCccC------cccHHHHHHHHHHhC-CCEEEEecCCCCCCCCC-----cccCCCceEEeccccCcceeeeeEEe
Q 040503 299 ASLGSIAREH------LKNTIAIGSFHAMMN-GIVSVAAAGNSGPDDGS-----VENVAPWILTVGASTTDREFTSYVTL 366 (767)
Q Consensus 299 ~SlG~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~-----~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (767)
||||...... ..+.+..+++.+.++ |+++|+||||+|..... .+..++++|+|||++....
T Consensus 91 mS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~------- 163 (247)
T cd07488 91 HSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD------- 163 (247)
T ss_pred eCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-------
Confidence 9999873221 234566777777666 99999999999975322 2345688999999764320
Q ss_pred cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCce
Q 040503 367 GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV 446 (767)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~ 446 (767)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCC--CCCCCCCCc
Q 040503 447 GMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSR--GPNMIDPAI 524 (767)
Q Consensus 447 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~--Gp~~~~~~~ 524 (767)
....+.||++ +|+. +++
T Consensus 164 -----------------------------------------------------------~~~~s~~sn~~~~~~~--~~~ 182 (247)
T cd07488 164 -----------------------------------------------------------RFFASDVSNAGSEINS--YGR 182 (247)
T ss_pred -----------------------------------------------------------cceecccccccCCCCC--CCC
Confidence 0123445554 4544 788
Q ss_pred ccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCH------HHHHHHHHhc
Q 040503 525 FKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP------AAIKSAIMTT 597 (767)
Q Consensus 525 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp------~~ik~~L~~T 597 (767)
.||||+|||++|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.|
T Consensus 183 ~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 183 RKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred ceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 99999999999998 22 26889999999999999999999999887764 4566666655
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=5.1e-31 Score=272.08 Aligned_cols=197 Identities=35% Similarity=0.492 Sum_probs=158.6
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh-hcCCcEEE
Q 040503 220 TGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI-HDGVDVIS 298 (767)
Q Consensus 220 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~-~~gvdVIn 298 (767)
...+..+||||||++|++..... ...|+||+++|+.+|+....+ ......+++++++++ ..+++|||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~---~~~~~~~~~ai~~~~~~~~~~iin 106 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDG---SGSSSDIAAAIDYAAADQGADVIN 106 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCC---CcCHHHHHHHHHHHHhccCCCEEE
Confidence 45578899999999999886332 127999999999999988765 467889999999999 89999999
Q ss_pred eccCCCCccCcccHHHHHHHHHHhC-CCEEEEecCCCCCCCC---CcccCCCceEEeccccCcceeeeeEEecCceeEee
Q 040503 299 ASLGSIAREHLKNTIAIGSFHAMMN-GIVSVAAAGNSGPDDG---SVENVAPWILTVGASTTDREFTSYVTLGNKMVIKG 374 (767)
Q Consensus 299 ~SlG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g 374 (767)
||||..... ....+...+..+.++ |+++|+||||.+.... ......+++|+||+++.+.
T Consensus 107 ~S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 107 LSLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred eCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 999987432 345567777778777 9999999999997765 3566789999999966432
Q ss_pred eeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccC
Q 040503 375 ASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSK 454 (767)
Q Consensus 375 ~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~ 454 (767)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCce-ecccCCCCCCCCCCcccceEEeCC
Q 040503 455 ESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMM-AFFTSRGPNMIDPAIFKPDVTAPG 533 (767)
Q Consensus 455 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSs~Gp~~~~~~~~KPDI~APG 533 (767)
.. ..++++|+ |||+.|||
T Consensus 170 -----------------------------------------------------~~~~~~~~~~~--------~~~~~apg 188 (241)
T cd00306 170 -----------------------------------------------------TPASPSSNGGA--------GVDIAAPG 188 (241)
T ss_pred -----------------------------------------------------CccCCcCCCCC--------CceEEeCc
Confidence 11 13444444 56999999
Q ss_pred CcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 534 VDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 534 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
.++...... ....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 189 ~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 189 GDILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 999875111 12389999999999999999999999999999999999999875
No 40
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-31 Score=293.76 Aligned_cols=241 Identities=24% Similarity=0.312 Sum_probs=180.6
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCC
Q 040503 224 EEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGS 303 (767)
Q Consensus 224 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~ 303 (767)
..-|||||||||+|+..... ...|+||+|+|+.+++.+..- ++.-+...+.+|+..++++++||||||+|-
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RL-gsMETgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRL-GSMETGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccc-cccccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 34599999999999985543 347889999999999966442 113455678999999999999999999998
Q ss_pred CC-ccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccC---CCceEEeccccCcceeeeeEEecCceeEeeeeeec
Q 040503 304 IA-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENV---APWILTVGASTTDREFTSYVTLGNKMVIKGASVSQ 379 (767)
Q Consensus 304 ~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 379 (767)
.. .+.....++..-+.+.++|+++|+||||+||...+++++ ...+|.|||.-.....
T Consensus 380 ~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm------------------- 440 (1304)
T KOG1114|consen 380 DAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM------------------- 440 (1304)
T ss_pred cCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH-------------------
Confidence 73 222333444444444589999999999999998887754 3478888884321100
Q ss_pred cccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcc
Q 040503 380 KGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNK 459 (767)
Q Consensus 380 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~ 459 (767)
...|.++
T Consensus 441 ------~a~y~~~------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 441 ------QAEYSVR------------------------------------------------------------------- 447 (1304)
T ss_pred ------Hhhhhhh-------------------------------------------------------------------
Confidence 0000000
Q ss_pred cccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEe
Q 040503 460 VLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAA 539 (767)
Q Consensus 460 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa 539 (767)
.+-......+|||||+. ||.+--.|.|||+.|.+-
T Consensus 448 -------------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV 482 (1304)
T KOG1114|consen 448 -------------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV 482 (1304)
T ss_pred -------------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC
Confidence 00124578899999999 999999999999998663
Q ss_pred ecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH----hCCCCCHHHHHHHHHhccccccCCCCcccCCCCCC
Q 040503 540 FTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT----LHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGE 615 (767)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 615 (767)
|... ...-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.++++.
T Consensus 483 -P~~t----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----------- 540 (1304)
T KOG1114|consen 483 -PQYT----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----------- 540 (1304)
T ss_pred -chhh----------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-----------
Confidence 2111 01567899999999999999999975 567899999999999999987533
Q ss_pred CCCCCccCCCccCccCcCC
Q 040503 616 KATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 616 ~~~~~~~G~G~vd~~~A~~ 634 (767)
.+|.+|.|++++.+|.+
T Consensus 541 --d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 --DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred --chhccCcceeehhHHHH
Confidence 46899999999999985
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=240.20 Aligned_cols=249 Identities=29% Similarity=0.415 Sum_probs=187.1
Q ss_pred cccccc--CCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCC
Q 040503 133 DSAWKK--ARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNP 210 (767)
Q Consensus 133 ~~~~~~--~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 210 (767)
...|.. +.+|+||+|+|||+||+..||+|.+... ....|.+.
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~--------------------------~~~~~~~~---------- 173 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV--------------------------AGGDFVDG---------- 173 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccc--------------------------cccccccC----------
Confidence 467777 8999999999999999999999986410 00122211
Q ss_pred CCCCCCCCC-CCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCC-CCCCCCChhHHHHHHHH
Q 040503 211 DAVIPQNLT-TGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKP-NENDSCASADILSAYDL 288 (767)
Q Consensus 211 ~~~~~~~~~-~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-~~~~~~~~~~i~~aid~ 288 (767)
... ...|..+|||||+|++++.... ......|+||+++++.+|++... + ....++++++|++
T Consensus 174 ------~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g---~~~~~~~~~~i~~ 237 (508)
T COG1404 174 ------DPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGG---SGELSDVAEGIEG 237 (508)
T ss_pred ------CCCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCC---cccHHHHHHHHHH
Confidence 011 2568999999999999984211 11224899999999999999876 4 5778888999999
Q ss_pred hhhcC--CcEEEeccCCCCccCcccHHHHHHHHHHhCC-CEEEEecCCCCCCCCC----cccCC--CceEEeccccCcce
Q 040503 289 AIHDG--VDVISASLGSIAREHLKNTIAIGSFHAMMNG-IVSVAAAGNSGPDDGS----VENVA--PWILTVGASTTDRE 359 (767)
Q Consensus 289 a~~~g--vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~~--p~vitVgA~~~~~~ 359 (767)
++..+ +++||||+|..........+..++..++..| +++|+++||.+..... .+... +.+++||+.+.
T Consensus 238 ~~~~~~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--- 314 (508)
T COG1404 238 AANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--- 314 (508)
T ss_pred HHhcCCCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---
Confidence 99999 9999999998511223455666667777777 9999999999866521 11111 35666666432
Q ss_pred eeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHH
Q 040503 360 FTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQW 439 (767)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 439 (767)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCC
Q 040503 440 AAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNM 519 (767)
Q Consensus 440 ~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 519 (767)
.+.++.||++|+..
T Consensus 315 ------------------------------------------------------------------~~~~~~~s~~g~~~ 328 (508)
T COG1404 315 ------------------------------------------------------------------SDTVASFSNDGSPT 328 (508)
T ss_pred ------------------------------------------------------------------CCccccccccCCCC
Confidence 14677889999741
Q ss_pred CCCCcccceEEeCCCcEEE-----eecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCC-CCCHHHHHHH
Q 040503 520 IDPAIFKPDVTAPGVDIIA-----AFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHP-DWSPAAIKSA 593 (767)
Q Consensus 520 ~~~~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~~sp~~ik~~ 593 (767)
..+++|||.+|.+ .+++.. ..|..++||||++|||+|.+||+++.+| .+++.+++..
T Consensus 329 ------~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~ 391 (508)
T COG1404 329 ------GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNL 391 (508)
T ss_pred ------CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHH
Confidence 1299999999998 444421 1499999999999999999999999999 8999999999
Q ss_pred HHhccc
Q 040503 594 IMTTAR 599 (767)
Q Consensus 594 L~~TA~ 599 (767)
+..++.
T Consensus 392 ~~~~~~ 397 (508)
T COG1404 392 IVTTAG 397 (508)
T ss_pred Hhhccc
Confidence 888876
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.4e-22 Score=201.67 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=100.5
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|.++++|++|+++|+|.||||-||+++.+ .| --..++|...
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n----------------------yn--aeasydfssn------------ 194 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN----------------------YN--AEASYDFSSN------------ 194 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc----------------------cC--ceeecccccC------------
Confidence 67999999999999999999999999999753 00 1112233221
Q ss_pred CCCCCCCCCCC--CCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh
Q 040503 213 VIPQNLTTGRD--EEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI 290 (767)
Q Consensus 213 ~~~~~~~~~~D--~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~ 290 (767)
++-++....| .+.|||.|||-+++...++ ++| .|||.+.++..+|+++. -...|+++|-...-
T Consensus 195 -dpfpyprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq------pymtdlieansmgh 259 (629)
T KOG3526|consen 195 -DPFPYPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ------PYMTDLIEANSMGH 259 (629)
T ss_pred -CCCCCCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC------chhhhhhhhcccCC
Confidence 1111222222 5789999999888776543 355 59999999999999875 44666666543322
Q ss_pred h-cCCcEEEeccCCCCc-cCcccH---HHHHHHHHHh-----CCCEEEEecCCCCCC
Q 040503 291 H-DGVDVISASLGSIAR-EHLKNT---IAIGSFHAMM-----NGIVSVAAAGNSGPD 337 (767)
Q Consensus 291 ~-~gvdVIn~SlG~~~~-~~~~~~---~~~a~~~a~~-----~Gi~vV~AAGN~G~~ 337 (767)
+ ...+|.+-|||.... ...+.+ ..+|+-+-++ .|-+.|.|.|..|.+
T Consensus 260 ep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 260 EPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred CCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 2 348999999998732 222222 2223333332 456888888887743
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.74 E-value=2.1e-17 Score=180.66 Aligned_cols=101 Identities=25% Similarity=0.254 Sum_probs=79.9
Q ss_pred CcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc---CCcEEEeccCCCCcc---CcccHHHHHHHHHHhCC
Q 040503 251 GTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD---GVDVISASLGSIARE---HLKNTIAIGSFHAMMNG 324 (767)
Q Consensus 251 g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~---gvdVIn~SlG~~~~~---~~~~~~~~a~~~a~~~G 324 (767)
..+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~-------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV-------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC-------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 345899999999999997642 34577788888877 999999999987422 23456777888899999
Q ss_pred CEEEEecCCCCCCCCC-----------cccCCCceEEeccccCcc
Q 040503 325 IVSVAAAGNSGPDDGS-----------VENVAPWILTVGASTTDR 358 (767)
Q Consensus 325 i~vV~AAGN~G~~~~~-----------~~~~~p~vitVgA~~~~~ 358 (767)
|+||+||||+|..... .++..|+|++||+++...
T Consensus 154 itvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 154 ITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999999999976532 345689999999987654
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.15 E-value=3.8e-10 Score=104.46 Aligned_cols=122 Identities=43% Similarity=0.703 Sum_probs=96.2
Q ss_pred EEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCC--chhHHHHHHH
Q 040503 364 VTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGAR--YGDEKGQWAA 441 (767)
Q Consensus 364 ~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~--~~~~~~~~~~ 441 (767)
+.+||++++.|++++.... ..+++++..... .......|.+..++..+++||||||+++. .+.++..+++
T Consensus 2 i~LGng~~i~G~sl~~~~~----~~~~~~~~~~~~----~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL----KTYPLVYKSANS----GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC----CccceEeccCcC----CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHH
Confidence 6789999999999995331 356777633211 22345789998888899999999999977 5678999999
Q ss_pred HcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEE
Q 040503 442 QAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTAS 493 (767)
Q Consensus 442 ~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 493 (767)
++||.|+|++++.............+|.+.|...+|+.|++|++++.+++++
T Consensus 74 ~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999999887644333333568999999999999999999998776654
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.13 E-value=3.1e-10 Score=107.33 Aligned_cols=106 Identities=25% Similarity=0.229 Sum_probs=83.3
Q ss_pred cccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccccc-ccccccEEEeehhhHHHHHHHHhc
Q 040503 409 ECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKVLN-MVHHLPTAHLNYTDGESVYAYINS 486 (767)
Q Consensus 409 ~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~-~~~~~p~~~i~~~~g~~l~~~~~~ 486 (767)
.|...++...+++|||+||.|+. .+.+|..+++++||.|+|++++......... ....+|.+.|+..+|+.|++|+++
T Consensus 35 ~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 35 LGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred CCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC
Confidence 35555566678999999999998 8899999999999999999998754322221 134789999999999999999988
Q ss_pred CCCceEEEecCceeeccCCCCceecccCCCCCC
Q 040503 487 TQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNM 519 (767)
Q Consensus 487 ~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 519 (767)
+++|.+..+.. ..+.+.++.||||||+.
T Consensus 115 ----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 115 ----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred ----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 45555555444 45678899999999964
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.88 E-value=3.7e-09 Score=89.86 Aligned_cols=78 Identities=32% Similarity=0.508 Sum_probs=57.9
Q ss_pred CEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCc----cccccceEEEEcceeeeEEEEcCHHHHHHhhCCCCeEE
Q 040503 29 PYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSV----EEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVS 104 (767)
Q Consensus 29 ~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~~g~~~~~~~~~~~~l~~~~~V~~ 104 (767)
+|||+|++.... ......+.+++.+++.+. .....++.+.|+..++||+++++++++++|+++|+|++
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 599999997653 334667777777554321 23467899999999999999999999999999999999
Q ss_pred EEeCcccccC
Q 040503 105 VFPDEGAKLH 114 (767)
Q Consensus 105 v~~~~~~~~~ 114 (767)
|+||+.++++
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999988764
No 47
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=6e-07 Score=99.38 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=97.6
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
...|..+++|+++.|+|+|.|+...||+.... .-..+..++...-+
T Consensus 23 ~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~------------------------~~~~~s~d~~~~~~---------- 68 (431)
T KOG3525|consen 23 QNAWCKGYTGTRVSVTILDDGLECSHPDLRNN------------------------YDPLGSYDVNRHDN---------- 68 (431)
T ss_pred eeccccCCCCCceEEEEeeccccccCcccccc------------------------cCcceeEeeecCCC----------
Confidence 57999999999999999999999999998753 11222222222110
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh-
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH- 291 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~- 291 (767)
.+..-.+......|||-|++-.+....+.. -..|+++++++..++++...- .+...+......
T Consensus 69 -~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~~~v-------~~~~~~~~~~~~~ 132 (431)
T KOG3525|consen 69 -DPEPRCDGTNENKHGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLAGCV-------SDAVEAPSLGFGP 132 (431)
T ss_pred -CcccccCCCCccccCCCCCcccccccCCCc--------CCCCcccCccccceeeeeeec-------ccceecccccCCC
Confidence 111112223468899999999998752211 236899999999999986321 122222222222
Q ss_pred cCCcEEEeccCCCCc----cCcccHHHHHHHHH-----HhCCCEEEEecCCCCCCC
Q 040503 292 DGVDVISASLGSIAR----EHLKNTIAIGSFHA-----MMNGIVSVAAAGNSGPDD 338 (767)
Q Consensus 292 ~gvdVIn~SlG~~~~----~~~~~~~~~a~~~a-----~~~Gi~vV~AAGN~G~~~ 338 (767)
.-+++-+.|||.... .........++..+ ..+|-+.|++.||.|...
T Consensus 133 ~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 133 CHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 348999999998731 11112223333332 256789999999988543
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.49 E-value=5.6e-07 Score=82.68 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=71.5
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc---ccc--ccccccEEEeehhhHHHH
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK---VLN--MVHHLPTAHLNYTDGESV 480 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l 480 (767)
...|.+..+...+++|||+||.|+. .+.+|..+++++||.++|++|+...... ... ....+|.+.|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 4779988888788999999999999 8999999999999999999997663211 111 345799999999999999
Q ss_pred HHHHhcCCCceEE
Q 040503 481 YAYINSTQNPTAS 493 (767)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (767)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999887665443
No 49
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.46 E-value=8.9e-07 Score=80.86 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=69.9
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcccc----cccccccEEEeehhhHHHH
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKVL----NMVHHLPTAHLNYTDGESV 480 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 480 (767)
....|.+.... .+++|||+||.|+. .+..|..+++++||.|+|++++........ .....+|.+.|+.++|..|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45679888774 45999999999988 888999999999999999998876422211 1234799999999999999
Q ss_pred HHHHhcCCCceEE
Q 040503 481 YAYINSTQNPTAS 493 (767)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (767)
++|++.+...+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999987665543
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.45 E-value=1e-06 Score=82.22 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=73.2
Q ss_pred ccCcccCCCC--CCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCc-cc---ccccccccEEEeehhhHH
Q 040503 406 DASECKKGSI--DPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGN-KV---LNMVHHLPTAHLNYTDGE 478 (767)
Q Consensus 406 ~~~~c~~~~~--~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~-~~---~~~~~~~p~~~i~~~~g~ 478 (767)
....|.+... ++.++.|+|+|+.||. .|.+|..+++++||.++|+|++...+. .+ ......+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578998876 6678999999999999 999999999999999999999986221 22 112247899999999999
Q ss_pred HHHHHHhcCCCceEEE
Q 040503 479 SVYAYINSTQNPTASM 494 (767)
Q Consensus 479 ~l~~~~~~~~~~~~~i 494 (767)
.|++++..+.+.+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999887766653
No 51
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.43 E-value=3.5e-07 Score=80.96 Aligned_cols=79 Identities=28% Similarity=0.426 Sum_probs=63.3
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCC----CCcccccccccccEEEeehhhHHHH
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKE----SGNKVLNMVHHLPTAHLNYTDGESV 480 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~----~~~~~~~~~~~~p~~~i~~~~g~~l 480 (767)
....|.+..+...+++||||||.||. .+.+|..+++++||.|+|+++... ...........+|+++|+..+|+.|
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred CcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 34567777788889999999999999 999999999999999999999221 1222334457899999999999999
Q ss_pred HHHH
Q 040503 481 YAYI 484 (767)
Q Consensus 481 ~~~~ 484 (767)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9986
No 52
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.41 E-value=1.6e-06 Score=78.25 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=67.7
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc--cc--cccccccEEEeehhhHHHH
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK--VL--NMVHHLPTAHLNYTDGESV 480 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~--~~--~~~~~~p~~~i~~~~g~~l 480 (767)
....|.+..+.+.+++|||+|+.||. +|.+|..+++.+||.++|++|+...... .. .....||+++|+..+|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 35779999888888999999999999 9999999999999999999998753111 11 1335789999999999999
Q ss_pred HHHHhc
Q 040503 481 YAYINS 486 (767)
Q Consensus 481 ~~~~~~ 486 (767)
++.+..
T Consensus 109 ~~~l~~ 114 (120)
T cd02129 109 QQTFGD 114 (120)
T ss_pred HHHhcc
Confidence 988764
No 53
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.37 E-value=2.5e-06 Score=77.40 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=70.7
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCC-cccc---c----ccccccEEEeehhhH
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESG-NKVL---N----MVHHLPTAHLNYTDG 477 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~-~~~~---~----~~~~~p~~~i~~~~g 477 (767)
...|.+... ..+++|+|+|+.||. .|.+|..+++++||.++|++++.... .... . ....||.++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 567899999999999 99999999999999999999986531 1111 1 234799999999999
Q ss_pred HHHHHHHhcCCCceEEE
Q 040503 478 ESVYAYINSTQNPTASM 494 (767)
Q Consensus 478 ~~l~~~~~~~~~~~~~i 494 (767)
+.|++.+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988777655
No 54
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.37 E-value=1.6e-06 Score=79.99 Aligned_cols=87 Identities=24% Similarity=0.348 Sum_probs=70.8
Q ss_pred ccCcccCCC--CCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccc--c----cccccccEEEeehhh
Q 040503 406 DASECKKGS--IDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKV--L----NMVHHLPTAHLNYTD 476 (767)
Q Consensus 406 ~~~~c~~~~--~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~--~----~~~~~~p~~~i~~~~ 476 (767)
....|.+.. +...+++|||+||.|+. .+.+|..+++++||.|+|++++....... . .....+|.+.|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 456798887 77788999999999998 88999999999999999999987632111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCceE
Q 040503 477 GESVYAYINSTQNPTA 492 (767)
Q Consensus 477 g~~l~~~~~~~~~~~~ 492 (767)
|+.|+.|+.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998665443
No 55
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.2e-05 Score=95.75 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=58.5
Q ss_pred cccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcC-CcEEEeccCCCC---ccC--cccHHHHHHHHHHhCCC
Q 040503 252 TAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDG-VDVISASLGSIA---REH--LKNTIAIGSFHAMMNGI 325 (767)
Q Consensus 252 ~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~g-vdVIn~SlG~~~---~~~--~~~~~~~a~~~a~~~Gi 325 (767)
...-+||+|+|..|-. +. .....+..|+++-...= --+|-.||+... ... .-+.+..-.+.|..+||
T Consensus 287 ~s~A~AP~A~I~lvva--p~-----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGI 359 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--PN-----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGI 359 (1174)
T ss_pred hhhccCccCceEEEEc--CC-----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccce
Confidence 3466799999999876 21 23333334443322221 133445666541 111 33445555667889999
Q ss_pred EEEEecCCCCCCCCC--------cccCCCceEEecc
Q 040503 326 VSVAAAGNSGPDDGS--------VENVAPWILTVGA 353 (767)
Q Consensus 326 ~vV~AAGN~G~~~~~--------~~~~~p~vitVgA 353 (767)
.+++|+|.+|....+ .++.+|++++||.
T Consensus 360 Ti~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 360 TIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999999865543 2245799999997
No 56
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.28 E-value=3.8e-06 Score=77.43 Aligned_cols=85 Identities=25% Similarity=0.296 Sum_probs=67.9
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCC-----ccc--cc-----ccccccEEEee
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESG-----NKV--LN-----MVHHLPTAHLN 473 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~-----~~~--~~-----~~~~~p~~~i~ 473 (767)
...|.+... +.+++|||+|+.||. .|.+|.++++++||.++|++|+.... ... .. +...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 556899999999999 99999999999999999999876532 111 11 23578999999
Q ss_pred hhhHHHHHHHHhcCCCceE
Q 040503 474 YTDGESVYAYINSTQNPTA 492 (767)
Q Consensus 474 ~~~g~~l~~~~~~~~~~~~ 492 (767)
..+|+.|++++..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988765544
No 57
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.26 E-value=4.3e-06 Score=76.80 Aligned_cols=86 Identities=22% Similarity=0.289 Sum_probs=68.8
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc--c--ccccccccEEEeehhhHHHHH
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK--V--LNMVHHLPTAHLNYTDGESVY 481 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~--~--~~~~~~~p~~~i~~~~g~~l~ 481 (767)
...|.+..+ +.+++|||+|+.|+. .+.+|.++++++||.++|+||+...+.. . ......+|.+.|+..+|+.|+
T Consensus 31 ~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 31 NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 346887655 357999999999999 8999999999999999999998732211 1 112457999999999999999
Q ss_pred HHHhcCCCceEE
Q 040503 482 AYINSTQNPTAS 493 (767)
Q Consensus 482 ~~~~~~~~~~~~ 493 (767)
..+..+.+.+++
T Consensus 110 ~~l~~g~~v~~~ 121 (122)
T cd02130 110 AALANGGEVSAN 121 (122)
T ss_pred HHHhcCCcEEEe
Confidence 999988776654
No 58
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.18 E-value=1.4e-05 Score=73.54 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=67.8
Q ss_pred cCcccCCCCC--CC----CccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccc-----------cccccccc
Q 040503 407 ASECKKGSID--PA----KVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKV-----------LNMVHHLP 468 (767)
Q Consensus 407 ~~~c~~~~~~--~~----~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~-----------~~~~~~~p 468 (767)
...|.+.... +. ...++|+|++||. .|.+|..+++++||.++|++|+....... ......+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4678876543 22 3788999999999 99999999999999999999986532110 11233699
Q ss_pred EEEeehhhHHHHHHHHhcCCCceEE
Q 040503 469 TAHLNYTDGESVYAYINSTQNPTAS 493 (767)
Q Consensus 469 ~~~i~~~~g~~l~~~~~~~~~~~~~ 493 (767)
+++|+..+|+.|++.+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988766543
No 59
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.16 E-value=7.8e-06 Score=75.95 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=60.0
Q ss_pred CCCCCCccceEEEEecCC-c-----hhHHHHHHHHcCceEEEEeccC--CCC-cccccc---cccccEEEeehhhHHHHH
Q 040503 414 SIDPAKVQGKILICYGAR-Y-----GDEKGQWAAQAGAVGMILVSSK--ESG-NKVLNM---VHHLPTAHLNYTDGESVY 481 (767)
Q Consensus 414 ~~~~~~~~gkivl~~~g~-~-----~~~~~~~~~~~G~~g~i~~~~~--~~~-~~~~~~---~~~~p~~~i~~~~g~~l~ 481 (767)
++.+.+++|||+|++||. . |.+|.++++++||.|+|+||+. ... .....+ ...+|++.|+..+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 344667999999999998 7 9999999999999999999997 321 112222 358999999999999999
Q ss_pred HHHhcC
Q 040503 482 AYINST 487 (767)
Q Consensus 482 ~~~~~~ 487 (767)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988543
No 60
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.14 E-value=1.1e-05 Score=75.82 Aligned_cols=83 Identities=16% Similarity=0.313 Sum_probs=67.2
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcccc------cccccccEEEeehhhHHH
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKVL------NMVHHLPTAHLNYTDGES 479 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 479 (767)
...|.+.. .+++|+|+|+.||. .|.+|..+++++||.++|+||+........ .....||.+.|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 36899999999999 999999999999999999998765321111 113579999999999999
Q ss_pred HHHHHhcCCCceE
Q 040503 480 VYAYINSTQNPTA 492 (767)
Q Consensus 480 l~~~~~~~~~~~~ 492 (767)
|++.+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998766544
No 61
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.11 E-value=1.6e-05 Score=73.30 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=67.2
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccc-ccccccccEEEeehhhHHHHHHH
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKV-LNMVHHLPTAHLNYTDGESVYAY 483 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~~ 483 (767)
....|.+...+..+++|||+|+.||. .+.+|..+++++||.++|+|++....... ..+...+|.+.+ ..+|+.|++.
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~ 118 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDA 118 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHH
Confidence 45789987666668999999999999 99999999999999999999887542211 122234565655 9999999999
Q ss_pred HhcCCCceEE
Q 040503 484 INSTQNPTAS 493 (767)
Q Consensus 484 ~~~~~~~~~~ 493 (767)
+..+...+++
T Consensus 119 l~~G~~vtv~ 128 (129)
T cd02124 119 LAAGSNVTVD 128 (129)
T ss_pred HhcCCeEEEe
Confidence 9877665443
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.05 E-value=1.8e-05 Score=71.62 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=64.5
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc--c----ccccccccEEEeehhhHH
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK--V----LNMVHHLPTAHLNYTDGE 478 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~--~----~~~~~~~p~~~i~~~~g~ 478 (767)
....|.+. +..+++|||+|+.||. .|.+|..+++++||.++|++|+...... . ......+|++.|+..+|+
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 45789766 5578999999999999 9999999999999999999987653211 1 122347999999999999
Q ss_pred HHHHHHhcC
Q 040503 479 SVYAYINST 487 (767)
Q Consensus 479 ~l~~~~~~~ 487 (767)
.|+.++..+
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 998877653
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.95 E-value=3.9e-05 Score=73.17 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=68.1
Q ss_pred cCcccCCCCCC---CCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc-ccc-----ccccccEEEeehhh
Q 040503 407 ASECKKGSIDP---AKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK-VLN-----MVHHLPTAHLNYTD 476 (767)
Q Consensus 407 ~~~c~~~~~~~---~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~-~~~-----~~~~~p~~~i~~~~ 476 (767)
...|.+....+ ....|+|+|+.||. .|.+|..+++++||.++|++++...... ... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798776644 78999999999999 9999999999999999999998653211 111 13489999999999
Q ss_pred HHHHHHHHhcCCC
Q 040503 477 GESVYAYINSTQN 489 (767)
Q Consensus 477 g~~l~~~~~~~~~ 489 (767)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987655
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.55 E-value=0.00059 Score=63.06 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCCCCccceEEEEecCC---chhHHHHHHHHcCceEEEEeccCCCCccc-----c--cccccccEEEeehhhHHHHHHHH
Q 040503 415 IDPAKVQGKILICYGAR---YGDEKGQWAAQAGAVGMILVSSKESGNKV-----L--NMVHHLPTAHLNYTDGESVYAYI 484 (767)
Q Consensus 415 ~~~~~~~gkivl~~~g~---~~~~~~~~~~~~G~~g~i~~~~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l~~~~ 484 (767)
+...+++|||+|+.++. .+..|..+++++||.|+|++++....... . .....+|.+.|+..+|+.|+..+
T Consensus 38 ~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l 117 (127)
T cd04819 38 FDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVA 117 (127)
T ss_pred cCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHH
Confidence 44557999999999976 56889999999999999999876542211 1 22357999999999999999999
Q ss_pred hcCC
Q 040503 485 NSTQ 488 (767)
Q Consensus 485 ~~~~ 488 (767)
+.+.
T Consensus 118 ~~g~ 121 (127)
T cd04819 118 ERND 121 (127)
T ss_pred hcCC
Confidence 8754
No 65
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=97.13 E-value=0.0039 Score=56.21 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=49.3
Q ss_pred EEeecCCceEEEEEEEEecCCCCceEEEEEec--------CCC----------c-eEEEEcCEEEEeeCCcEEEEEEEEE
Q 040503 685 IAVPKLNGTITFTRKVKNVGAANSTYKARTSE--------ITG----------V-STIVEPSILNFTKYGEEKTFKVAFS 745 (767)
Q Consensus 685 ~~~~~~~~~~t~~rtvtnv~~~~~ty~~~~~~--------p~g----------~-~v~v~p~~~~~~~~~~~~~~~v~~~ 745 (767)
|++.+.....+++++|+|.|+...+|+++... ..| . .+...|.++++ ++|++++|+|+|+
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 34556566799999999999999999997651 111 1 57777888999 8999999999999
Q ss_pred EccC---CCCCceeeeeeeEEEEcC
Q 040503 746 VKGD---DKPTDYGFWRIGLVRWFS 767 (767)
Q Consensus 746 ~~~~---~~~~~~~~~~~~~~~w~~ 767 (767)
+ .. .+...+.. |.|.+++
T Consensus 80 ~-p~~~~~~~~~~~e---G~I~~~~ 100 (112)
T PF06280_consen 80 P-PSGLDASNGPFYE---GFITFKS 100 (112)
T ss_dssp ---GGGHHTT-EEEE---EEEEEES
T ss_pred e-hhcCCcccCCEEE---EEEEEEc
Confidence 9 32 13345555 7776653
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.30 E-value=0.015 Score=54.18 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=57.2
Q ss_pred CCCCccceEEEEecCC-------chhHH-------HHHHHHcCceEEEEeccCCC-------Ccccc-cccccccEEEee
Q 040503 416 DPAKVQGKILICYGAR-------YGDEK-------GQWAAQAGAVGMILVSSKES-------GNKVL-NMVHHLPTAHLN 473 (767)
Q Consensus 416 ~~~~~~gkivl~~~g~-------~~~~~-------~~~~~~~G~~g~i~~~~~~~-------~~~~~-~~~~~~p~~~i~ 473 (767)
...+++|||+|+.++. .+..| .+.++++||.++|+++.... +.... .....+|.+.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 4567999999998865 34455 68899999999999986422 11111 223469999999
Q ss_pred hhhHHHHHHHHhcCCCceE
Q 040503 474 YTDGESVYAYINSTQNPTA 492 (767)
Q Consensus 474 ~~~g~~l~~~~~~~~~~~~ 492 (767)
..++..|...++.+...++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999888765444
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=95.73 E-value=0.02 Score=55.68 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=55.3
Q ss_pred CCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCC------------------Ccccc------------c---
Q 040503 417 PAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKES------------------GNKVL------------N--- 462 (767)
Q Consensus 417 ~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~------------------~~~~~------------~--- 462 (767)
..+++|||+|+.+|. .+.+|.++++++||.|+|+|++... ++.+. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 457899999999999 8899999999999999999988421 00000 0
Q ss_pred -ccccccEEEeehhhHHHHHHHHhcC
Q 040503 463 -MVHHLPTAHLNYTDGESVYAYINST 487 (767)
Q Consensus 463 -~~~~~p~~~i~~~~g~~l~~~~~~~ 487 (767)
....||++-|+..++..|+..+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1235899999999999999988653
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.20 E-value=0.092 Score=43.84 Aligned_cols=66 Identities=26% Similarity=0.290 Sum_probs=41.0
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEEccCCCCCceee
Q 040503 692 GTITFTRKVKNVGAAN-STYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGF 757 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~-~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 757 (767)
...+++.+|+|.|... ...++++..|.|-++...|..+.--++|+++++++++++-.....+.|.+
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 5788999999999654 56888889999999888888776448899999999999833444555544
No 69
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.82 E-value=0.1 Score=56.97 Aligned_cols=79 Identities=25% Similarity=0.454 Sum_probs=64.2
Q ss_pred CCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCC------CcccccccccccEEEeehhhHHHHHHHHhcCCC
Q 040503 417 PAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKES------GNKVLNMVHHLPTAHLNYTDGESVYAYINSTQN 489 (767)
Q Consensus 417 ~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 489 (767)
+.+.++|+++..||. .|.+|.+.++.+||.+++++|+... ++........||..+|..++++.+..-..++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 456899999999999 9999999999999999999999542 233334456899999999999999886666666
Q ss_pred ceEEEe
Q 040503 490 PTASMT 495 (767)
Q Consensus 490 ~~~~i~ 495 (767)
.++.+.
T Consensus 171 V~~~lY 176 (541)
T KOG2442|consen 171 VELALY 176 (541)
T ss_pred EEEEEE
Confidence 655553
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.86 E-value=0.11 Score=48.35 Aligned_cols=49 Identities=33% Similarity=0.528 Sum_probs=41.1
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-c------------hhHHHHHHHHcCceEEEEeccCC
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-Y------------GDEKGQWAAQAGAVGMILVSSKE 455 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~------------~~~~~~~~~~~G~~g~i~~~~~~ 455 (767)
...|...++...+++|||||+.++. . +..|.+++.++||.|+|++++..
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3467777777889999999999876 2 55799999999999999999754
No 71
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=93.85 E-value=0.11 Score=48.73 Aligned_cols=49 Identities=24% Similarity=0.258 Sum_probs=41.1
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-------------------chhHHHHHHHHcCceEEEEeccCC
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-------------------YGDEKGQWAAQAGAVGMILVSSKE 455 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-------------------~~~~~~~~~~~~G~~g~i~~~~~~ 455 (767)
...|...++...+++||||++.++. .+..|.+.++++||.|+|++++..
T Consensus 33 a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 33 APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 3468878888889999999998764 155799999999999999999865
No 72
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=93.17 E-value=0.13 Score=48.22 Aligned_cols=38 Identities=18% Similarity=0.027 Sum_probs=35.0
Q ss_pred CCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCC
Q 040503 418 AKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKE 455 (767)
Q Consensus 418 ~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~ 455 (767)
-+++|||+|+..|. .+..|.+++++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 46999999999999 899999999999999999998754
No 73
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.41 E-value=0.25 Score=46.83 Aligned_cols=50 Identities=26% Similarity=0.244 Sum_probs=40.3
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-------------------chhHHHHHHHHcCceEEEEeccCCC
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-------------------YGDEKGQWAAQAGAVGMILVSSKES 456 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-------------------~~~~~~~~~~~~G~~g~i~~~~~~~ 456 (767)
...|....+...+++|||||+.++. .+..|..++++.|+.|+|++++...
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 3457666777788999999998762 2467899999999999999998653
No 74
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=91.74 E-value=0.3 Score=49.34 Aligned_cols=39 Identities=36% Similarity=0.406 Sum_probs=35.0
Q ss_pred CCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCC
Q 040503 417 PAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKE 455 (767)
Q Consensus 417 ~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~ 455 (767)
..+++|||+|+.+|. .+..|.++++++||.|+|+|++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 457999999999998 678999999999999999999854
No 75
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=89.27 E-value=3.8 Score=35.84 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=42.6
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
...+.+.+|+|.|.....|++.......-.++++|..-.+ .+|++.++.|+|.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~ 73 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSP 73 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEe
Confidence 4677788899999999999987644234557777766556 78999999999996
No 76
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=88.14 E-value=2.8 Score=37.89 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=39.4
Q ss_pred eEEEEEEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 693 TITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 693 ~~t~~rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
.-.++..|+|.+..+.+|++++..++|+++......+++ ++|++.++.|.+.+
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEE
Confidence 567889999999999999999999889999665588888 88999999999988
No 77
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=87.59 E-value=0.73 Score=42.77 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=65.4
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccc----------ccccccccEEEeeh
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKV----------LNMVHHLPTAHLNY 474 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~----------~~~~~~~p~~~i~~ 474 (767)
....|....- .-...|.+.|.+||. +|..|..++.++||..+|+.++.....++ ..+...+|+.++-.
T Consensus 73 Pp~aC~elrN-~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 73 PPHACEELRN-EIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred ChhHHHHHhh-cccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 4567876432 234678999999999 99999999999999999999987654333 12235789999999
Q ss_pred hhHHHHHHHHhcCCCceEEE
Q 040503 475 TDGESVYAYINSTQNPTASM 494 (767)
Q Consensus 475 ~~g~~l~~~~~~~~~~~~~i 494 (767)
.+|..++.-++.-...-+.|
T Consensus 152 ~~Gy~ir~sL~r~~r~ha~i 171 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHAKI 171 (193)
T ss_pred cceEEEehhHHHhCCccEEE
Confidence 99987777776655444443
No 78
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.99 E-value=1.7 Score=46.65 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=63.0
Q ss_pred cCcccCCCC---CCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccccc----ccccccEEEeehhhHH
Q 040503 407 ASECKKGSI---DPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKVLN----MVHHLPTAHLNYTDGE 478 (767)
Q Consensus 407 ~~~c~~~~~---~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~ 478 (767)
.++|++..- ........++|+.||+ +|.+|..+++++|..++|+||+......... ....++.++++...|+
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 356776432 2445778899999999 9999999999999999999998776543332 3357899999999999
Q ss_pred HHHHHHhcC
Q 040503 479 SVYAYINST 487 (767)
Q Consensus 479 ~l~~~~~~~ 487 (767)
.|..|....
T Consensus 142 ~l~~~~~~~ 150 (348)
T KOG4628|consen 142 LLSSYAGRT 150 (348)
T ss_pred HHHHhhccc
Confidence 998875544
No 79
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.57 E-value=3.6 Score=45.39 Aligned_cols=65 Identities=25% Similarity=0.280 Sum_probs=54.5
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEEccCCCCCcee
Q 040503 692 GTITFTRKVKNVGAAN-STYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYG 756 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~-~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 756 (767)
...++...+.|.|+.+ ..-++++..|.|-++.|+|.++---++|++.++.+|+++...+..++|.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~ 462 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYR 462 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEE
Confidence 5688888999999866 6678899999999999999887665889999999999985566777765
No 80
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=81.78 E-value=0.97 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=22.0
Q ss_pred CCCCCceEEEEecccCCCCCCCcc
Q 040503 139 ARFGEDVIIANVDSGVWPESKSFA 162 (767)
Q Consensus 139 ~~~G~gV~VgVIDtGid~~Hp~f~ 162 (767)
.+.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 579999999999999999998874
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=81.41 E-value=10 Score=34.31 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=43.8
Q ss_pred ceEEEEEEEEecCCCCceEEEEEec---CC----CceEEEEcCEEEEeeCCcEEEEEEEEEEccC-CCCCceeee
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSE---IT----GVSTIVEPSILNFTKYGEEKTFKVAFSVKGD-DKPTDYGFW 758 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~---p~----g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 758 (767)
...+.+++|+|.++....+.+.+.. .. .-.+-++|..+++ ++|++++++| +.. .. ....+..||
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~-~~~~~~~E~~yr 85 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG-SKLPIDRESLYR 85 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC-SGS-SSS-EEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec-CCCCCCceEEEE
Confidence 3456688899999866666666654 11 1258899999999 8899999999 664 33 234455554
No 82
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=79.54 E-value=24 Score=32.16 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=48.0
Q ss_pred ceEEEEEEEEecCCCCceEEEEEec----CCC------------------c-e-EEEEcCEEEEeeCCcEEEEEEEEEEc
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSE----ITG------------------V-S-TIVEPSILNFTKYGEEKTFKVAFSVK 747 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~----p~g------------------~-~-v~v~p~~~~~~~~~~~~~~~v~~~~~ 747 (767)
.+.+++.+|+|.++...+|.+.+.. ..| + + +++ |..+++ +++++++++++++.
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~- 103 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM- 103 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc-
Confidence 6899999999999999999987531 111 0 0 222 455788 88999999999998
Q ss_pred cCCCCCceeeeeeeEEEEc
Q 040503 748 GDDKPTDYGFWRIGLVRWF 766 (767)
Q Consensus 748 ~~~~~~~~~~~~~~~~~w~ 766 (767)
......+... |.|.++
T Consensus 104 P~~~f~G~il---GGi~~~ 119 (121)
T PF06030_consen 104 PKKAFDGIIL---GGIYFS 119 (121)
T ss_pred CCCCcCCEEE---eeEEEE
Confidence 5544555444 666553
No 83
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=78.40 E-value=3.5 Score=39.36 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=32.7
Q ss_pred CCCCCCccceEEEEecCC-ch-------------------hHHHHHHHHcCceEEEEeccC
Q 040503 414 SIDPAKVQGKILICYGAR-YG-------------------DEKGQWAAQAGAVGMILVSSK 454 (767)
Q Consensus 414 ~~~~~~~~gkivl~~~g~-~~-------------------~~~~~~~~~~G~~g~i~~~~~ 454 (767)
++..-|++||||++..+. .+ ..|.+.+++.||.|+|++...
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 455678999999999765 21 138899999999999999764
No 84
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=67.41 E-value=28 Score=39.11 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=46.3
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
-...++..+.|-+..+.+|+++++.+++.++...+..+++ ++|++.++.|.+..
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~ 399 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRT 399 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEe
Confidence 3567888899999999999999999889888876457888 78999999998887
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=65.74 E-value=35 Score=29.86 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=39.6
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
...+..++|+|.++..-.|.+....|.. ..|.|..-.+ .++++.++.|++..
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~ 69 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQP 69 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-S
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEe
Confidence 4567788999999999999998888865 5677888767 78999999999987
No 86
>COG1470 Predicted membrane protein [Function unknown]
Probab=64.24 E-value=34 Score=38.11 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=50.9
Q ss_pred ceEEEEEEEEecCCCCceEEEEEe-cCCCceEEEEc-----CEEEEeeCCcEEEEEEEEEEccCCCCCceee
Q 040503 692 GTITFTRKVKNVGAANSTYKARTS-EITGVSTIVEP-----SILNFTKYGEEKTFKVAFSVKGDDKPTDYGF 757 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~-~p~g~~v~v~p-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 757 (767)
.+..+++++.|.|..+.+|.+++. .|.|-...+.- .++.+ ++||++.|+|.+.+...+..+.|.+
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Ynv 354 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTYNV 354 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCceeE
Confidence 467899999999999999999998 78876665544 34555 7899999999998844466677665
No 87
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=58.49 E-value=5.1 Score=34.78 Aligned_cols=22 Identities=27% Similarity=0.233 Sum_probs=12.4
Q ss_pred CCCchHHHHHH-HHHHHHhccCc
Q 040503 1 MGLPNLYFLLL-LFSLLSFLQTP 22 (767)
Q Consensus 1 M~~~~~~~~l~-~~~l~~~~~~~ 22 (767)
|..|.++||.| |+++||+++..
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 88777666644 44444554433
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=53.06 E-value=35 Score=28.39 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.0
Q ss_pred eEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 721 STIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 721 ~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
.+++.|..+++ ..|+++.|+++++.
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~ 28 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTP 28 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEEC
Confidence 57889999988 68999999999877
No 89
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=52.68 E-value=1.1e+02 Score=25.93 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=33.9
Q ss_pred EEeecCCceEEEEEEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 685 IAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 685 ~~~~~~~~~~t~~rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
+.+........+.++++|.|....++++.-..- -.-.|.++++ ++|++++..+.+..
T Consensus 11 v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y----~~~~~~~~~v-~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 11 VTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY----GGGGPWTYTV-AAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc----CCCCCEEEEE-CCCCEEEEEEeecC
Confidence 333333344578888999887777776654211 1123455666 66888777776643
No 90
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=50.40 E-value=49 Score=24.18 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=25.1
Q ss_pred EEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEE
Q 040503 698 RKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAF 744 (767)
Q Consensus 698 rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~ 744 (767)
++++|.|+...... .++..=|-. +++...-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt-~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCT-TAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCE-EeeCCcceE-CCCCEEEEEEEC
Confidence 57889997654332 233333322 222333334 789999998874
No 91
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=39.00 E-value=31 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=19.3
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcc
Q 040503 575 VGLVKTLHPDWSPAAIKSAIMTTA 598 (767)
Q Consensus 575 aALl~q~~P~~sp~~ik~~L~~TA 598 (767)
+--|++.+|+++++.|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 456789999999999999997653
No 92
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=38.93 E-value=1.6e+02 Score=24.78 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=30.9
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEecCCCceEEEEcCEE-EEeeCCcEEEEEEEEEE
Q 040503 692 GTITFTRKVKNVGAAN-STYKARTSEITGVSTIVEPSIL-NFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~-~ty~~~~~~p~g~~v~v~p~~~-~~~~~~~~~~~~v~~~~ 746 (767)
...+++.+|+|.|... ..+.+.+-.. |..+ .-..+ .+ .+|++.++++++..
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTP 71 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEe
Confidence 6789999999999754 5566665432 3222 11122 34 67899888888888
No 93
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=38.56 E-value=2.4e+02 Score=24.61 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=35.1
Q ss_pred CceEEEEEEEEecCCCC-ceEEEE-----EecCCCce---EEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 691 NGTITFTRKVKNVGAAN-STYKAR-----TSEITGVS---TIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 691 ~~~~t~~rtvtnv~~~~-~ty~~~-----~~~p~g~~---v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
+...++..+++|..+.. .+-++. +.. .|+. ....-..+++ +++++.++++++..
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITP 76 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-H
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEc
Confidence 36788999999998766 553332 232 3663 4555666777 78999999999987
No 94
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=37.19 E-value=1.7e+02 Score=24.55 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=25.6
Q ss_pred EEEEEEEEecCCCCc--------eEEEEEecCCCceEE---------EEcCEEEEeeCCcEEEEEEEEEE
Q 040503 694 ITFTRKVKNVGAANS--------TYKARTSEITGVSTI---------VEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 694 ~t~~rtvtnv~~~~~--------ty~~~~~~p~g~~v~---------v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
..++.+|+|.++... .|.+.+..+.|-.|. ---...++ ++||+++|+.++..
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~ 70 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDL 70 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECC
Confidence 356677777775433 333344434443333 22234556 78999999998876
No 95
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=35.29 E-value=3.6e+02 Score=25.22 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=47.4
Q ss_pred eEEEEEEEEecCC-CCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEEccCCCCCceeeeeeeEEEEc
Q 040503 693 TITFTRKVKNVGA-ANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGFWRIGLVRWF 766 (767)
Q Consensus 693 ~~t~~rtvtnv~~-~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~w~ 766 (767)
...+..-|-|-.. .-..-++......++++--.|..+++ .+++.++++.++++ .+...+..| |.|+|.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKV--sStetGvIf---G~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKV--SSTETGVIF---GNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEE--EeccCCEEE---EEEEEe
Confidence 3444455555443 22344455555567888888999999 78999999999998 556778888 777774
No 96
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=35.07 E-value=2.5e+02 Score=23.74 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=36.2
Q ss_pred CeEEeecCCceEEEEEEEEecCCCCceEEEEEe-----cCCCceEEEEcCEEEEeeCCc-EEEEEEEEEE
Q 040503 683 PSIAVPKLNGTITFTRKVKNVGAANSTYKARTS-----EITGVSTIVEPSILNFTKYGE-EKTFKVAFSV 746 (767)
Q Consensus 683 ps~~~~~~~~~~t~~rtvtnv~~~~~ty~~~~~-----~p~g~~v~v~p~~~~~~~~~~-~~~~~v~~~~ 746 (767)
|++++.+..+ +++++|.-.|+.....++.+. +-+|........+|+| .+|| +++++|.+.-
T Consensus 9 ~~~~V~E~~g--~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F-~~ge~~k~i~i~i~d 75 (90)
T smart00237 9 PVYTVSESDG--EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTF-PPGETEKCIRIKIID 75 (90)
T ss_pred CeEEEEECCe--EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEE-CCCCEEEEEEEEEeC
Confidence 4666666544 444555555655555555543 3346666666889999 4555 5666666554
No 97
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=31.16 E-value=1.2e+02 Score=36.88 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=34.5
Q ss_pred ceEEEEEEEEecCCCCceEEEE--EecCCCceEEEEc-------CEEEEeeCCcEEEEEEEEEE
Q 040503 692 GTITFTRKVKNVGAANSTYKAR--TSEITGVSTIVEP-------SILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~--~~~p~g~~v~v~p-------~~~~~~~~~~~~~~~v~~~~ 746 (767)
+..+++.+|||+|+.+..-.+. +..|.+- +. .| .++.+ ++||++++++++..
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~ 727 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDI 727 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecH
Confidence 5688999999999865444443 3444321 11 23 34455 78999999998876
No 98
>PRK15019 CsdA-binding activator; Provisional
Probab=30.55 E-value=47 Score=31.37 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=28.0
Q ss_pred eeecccccchhhHHHHHHHHHHhCCCCCHHHHHH
Q 040503 559 IMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKS 592 (767)
Q Consensus 559 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~ 592 (767)
..+.|.| =|+.|-|++|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444565 67999999999999999999999976
No 99
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=29.13 E-value=52 Score=30.74 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=28.6
Q ss_pred eeecccccchhhHHHHHHHHHHhCCCCCHHHHHHH
Q 040503 559 IMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSA 593 (767)
Q Consensus 559 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~ 593 (767)
..+.|.| =|+.|-|++|||.+.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 4455666 589999999999999999999998754
No 100
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=28.93 E-value=2.5e+02 Score=28.62 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=40.3
Q ss_pred ceEEEEEEEEecCCCCceEEEEE--ecC---CCceEEEEcCEEEEeeCCcEEEEEEEEEEccCCCCCceeee
Q 040503 692 GTITFTRKVKNVGAANSTYKART--SEI---TGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGFW 758 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~--~~p---~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 758 (767)
+....+.+|+|.++. .|.+.. +.. ....+-|+|..+++ .+|+++.++|.... ......+-.||
T Consensus 38 ~~~~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~~-~lp~drEs~f~ 105 (230)
T PRK09918 38 SDGEGSINVKNTDSN--PILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILKS-GSPLNTEHLLR 105 (230)
T ss_pred CCCeEEEEEEcCCCC--cEEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEECC-CCCCCeeEEEE
Confidence 456667788898854 455533 211 12458899999999 78999999887653 22223344555
No 101
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=28.33 E-value=42 Score=22.78 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=10.8
Q ss_pred cchhhHHHHHHHH
Q 040503 566 MSCPHVAGIVGLV 578 (767)
Q Consensus 566 mAaP~VAG~aALl 578 (767)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 102
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=26.90 E-value=2.4e+02 Score=21.40 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=24.4
Q ss_pred CceEEEEEEEEecCCCCce-EEEEEecCCCceEEEEcCEEEE
Q 040503 691 NGTITFTRKVKNVGAANST-YKARTSEITGVSTIVEPSILNF 731 (767)
Q Consensus 691 ~~~~t~~rtvtnv~~~~~t-y~~~~~~p~g~~v~v~p~~~~~ 731 (767)
....+++.+|+|.|....+ ..+.-..|.|+. ..|.++++
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~--~v~~S~~~ 50 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTT--FVSNSVTV 50 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCE--EEeCcEEE
Confidence 3689999999999975543 333334566643 33555544
No 103
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=26.49 E-value=95 Score=22.27 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 574 IVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 574 ~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
.+..|++.+|+++...|+..|...
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHc
Confidence 456789999999999999999864
No 104
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=25.72 E-value=64 Score=30.12 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=27.8
Q ss_pred eeecccccchhhHHHHHHHHHHhCCCCCHHHHHH
Q 040503 559 IMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKS 592 (767)
Q Consensus 559 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~ 592 (767)
..+.|.| =|+.|-|++||+.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444666 68999999999999999999999875
No 105
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=25.02 E-value=61 Score=24.97 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=22.5
Q ss_pred ceeeecccccchhhHHHHH------HHHHHhCCCCCHHHHHHHHH
Q 040503 557 PYIMMSGTSMSCPHVAGIV------GLVKTLHPDWSPAAIKSAIM 595 (767)
Q Consensus 557 ~y~~~sGTSmAaP~VAG~a------ALl~q~~P~~sp~~ik~~L~ 595 (767)
+--.+.||=+..=.|.... .-+.+.||.+++++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3445566666655554442 23456799999999999984
No 106
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=24.85 E-value=33 Score=15.55 Aligned_cols=6 Identities=50% Similarity=0.689 Sum_probs=3.9
Q ss_pred cccCCC
Q 040503 511 FFTSRG 516 (767)
Q Consensus 511 ~fSs~G 516 (767)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 467776
No 107
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=24.19 E-value=76 Score=29.06 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=27.1
Q ss_pred eeecccccchhhHHHHHHHHHHhCCCCCHHHHHHH
Q 040503 559 IMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSA 593 (767)
Q Consensus 559 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~ 593 (767)
..+.|.|= |+.|-|++||+.+.+-..+|++|.+.
T Consensus 58 ~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 58 VHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 35556664 67999999999999999999998764
No 108
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=24.12 E-value=90 Score=25.95 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=16.8
Q ss_pred CCCchHHHHHHHHHHHHhccCcC
Q 040503 1 MGLPNLYFLLLLFSLLSFLQTPT 23 (767)
Q Consensus 1 M~~~~~~~~l~~~~l~~~~~~~~ 23 (767)
|.|+.+++.||...|.+.++++.
T Consensus 1 MaRRlwiLslLAVtLtVALAAPs 23 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPS 23 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhccc
Confidence 88888887777777777665554
No 109
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.12 E-value=71 Score=29.93 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=25.6
Q ss_pred eecccccchhhHHHHHHHHHHhCCCCCHHHHHH
Q 040503 560 MMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKS 592 (767)
Q Consensus 560 ~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~ 592 (767)
.+.|=| =|++|.|++|++++.+-..||++|..
T Consensus 73 ~F~gdS-dA~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDS-DARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccc-hhHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 344444 36899999999999999999998853
No 110
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=23.05 E-value=5.3e+02 Score=23.62 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=14.8
Q ss_pred EEEEeeCCcEEEEEEEEEE
Q 040503 728 ILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 728 ~~~~~~~~~~~~~~v~~~~ 746 (767)
+++.+.+|+.+.|.|.+.+
T Consensus 74 sVTWtapgqf~~f~vs~~~ 92 (124)
T cd08523 74 SVTWKAPSQEVRAKVSLRA 92 (124)
T ss_pred EEEEcCCCceEEEEEEeec
Confidence 3566677889999998876
No 111
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=23.04 E-value=3.9e+02 Score=22.79 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=32.9
Q ss_pred CCCeEEeecCCceEEEEEEEEecCCCCceEEEEEe-----cCCCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 681 NYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTS-----EITGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 681 n~ps~~~~~~~~~~t~~rtvtnv~~~~~ty~~~~~-----~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
.-+++.+.+..+...+..++++ +.....-++.+. +-.|......+.+++|.+...++++.|++-.
T Consensus 16 ~~~~~~v~E~~~~~~v~V~~~~-~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i~i~i~d 85 (100)
T PF03160_consen 16 SSPSYTVSEGDGTVTVTVTRSG-GSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTINITIID 85 (100)
T ss_dssp SSSEEEEETTSSEEEEEEEEES-S-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEEEEEB--
T ss_pred eCCEEEEEeCCCEEEEEEEEcc-cCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEEEEEEeC
Confidence 3456667665555555554444 432233333221 2346777778889999544446788777654
No 112
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=22.76 E-value=2e+02 Score=23.37 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=20.2
Q ss_pred ceEEEEEEEEecCCCCce-EEEEEecCCCceE
Q 040503 692 GTITFTRKVKNVGAANST-YKARTSEITGVST 722 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~t-y~~~~~~p~g~~v 722 (767)
...+++++|+|.|..... ..+.-..|.|+++
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 689999999999975522 3333334666543
No 113
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=22.18 E-value=57 Score=26.85 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=21.7
Q ss_pred eEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 721 STIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 721 ~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
.+++.|..+++ ..|++..|++++..
T Consensus 4 ~I~i~~~~~~l-~~G~~~~l~~~~~~ 28 (79)
T PF02368_consen 4 SITITPTSVTL-KVGQTQQLTATVTP 28 (79)
T ss_dssp SEEETTTEEEC-ETTCEETTEEEEEE
T ss_pred EEEEECCEEEE-ECCCEEEEEEEEEE
Confidence 47888999888 78999999999887
No 114
>PLN03080 Probable beta-xylosidase; Provisional
Probab=21.26 E-value=1.5e+02 Score=36.22 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=33.6
Q ss_pred eEEEEEEEEecCCCCceEEEE--EecCCC-ce----EEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 693 TITFTRKVKNVGAANSTYKAR--TSEITG-VS----TIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 693 ~~t~~rtvtnv~~~~~ty~~~--~~~p~g-~~----v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
..+++.+|||+|..+....+. +..|.+ +. --+--.++.+ ++||++++++++..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 578999999999876555554 333432 11 0111134455 78999999888875
No 115
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.52 E-value=4.9e+02 Score=25.52 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=34.2
Q ss_pred ceEEEEEEEEecCCCCceEEEEEec----CCCceEEEEc--CEEEEeeCCcEEEEEEEEEE
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSE----ITGVSTIVEP--SILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~----p~g~~v~v~p--~~~~~~~~~~~~~~~v~~~~ 746 (767)
...+++.+|.|+|+ ..-|.+++.. +.++++---- .++.--++|+..+..+++++
T Consensus 38 ~~v~V~~~iyN~G~-~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p 97 (181)
T PF05753_consen 38 EDVTVTYTIYNVGS-SAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRP 97 (181)
T ss_pred cEEEEEEEEEECCC-CeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEee
Confidence 57899999999998 4667777654 2333331111 11222267888888888887
Done!