BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040505
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 85/176 (48%), Gaps = 10/176 (5%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMRELNTNICCIRLGNVHVIP 113
+A++ + + LPPGP+P P++G+L +M R ++ +RE ++ + LG+ V+
Sbjct: 1 MAKKTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLR--LREKYGDVFTVYLGSRPVVV 58
Query: 114 VTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHVLH 172
+ + E L F+ R + + G+ + G++W+ +R+ +A+
Sbjct: 59 LCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGY--GVIFANGERWRALRRFSLATMRDF 116
Query: 173 SVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMFSR 228
+ S+ + +EEA LV + +R + ++++ L+ N+I I+F +
Sbjct: 117 GMGKRSVEERIQEEARCLV-----EELRKSKGALLDNTLLFHSITSNIICSIVFGK 167
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 85/176 (48%), Gaps = 10/176 (5%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMRELNTNICCIRLGNVHVIP 113
+A++ + + LPPGP+P P++G+L +M R ++ +RE ++ + LG+ V+
Sbjct: 1 MAKKTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLR--LREKYGDVFTVYLGSRPVVV 58
Query: 114 VTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHVLH 172
+ + E L F+ R + + G+ + G++W+ +R+ +A+
Sbjct: 59 LCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGY--GVIFANGERWRALRRFSLATMRDF 116
Query: 173 SVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMFSR 228
+ S+ + +EEA LV + +R + ++++ L+ N+I I+F +
Sbjct: 117 GMGKRSVEERIQEEARCLV-----EELRKSKGALLDNTLLFHSITSNIICSIVFGK 167
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 85/176 (48%), Gaps = 10/176 (5%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMRELNTNICCIRLGNVHVIP 113
+A++ + + LPPGP+P P++G+L +M R ++ +RE ++ + LG+ V+
Sbjct: 1 MAKKTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLR--LREKYGDVFTVYLGSRPVVV 58
Query: 114 VTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHVLH 172
+ + E L F+ R + + G+ + G++W+ +R+ +A+
Sbjct: 59 LCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGY--GVIFANGERWRALRRFSLATMRDF 116
Query: 173 SVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMFSR 228
+ S+ + +EEA LV + +R + ++++ L+ N+I I+F +
Sbjct: 117 GMGKRSVEERIQEEARCLV-----EELRKSKGALLDNTLLFHSITSNIICSIVFGK 167
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 85/176 (48%), Gaps = 10/176 (5%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMRELNTNICCIRLGNVHVIP 113
+A++ + + LPPGP+P P++G+L +M R ++ +RE ++ + LG+ V+
Sbjct: 1 MAKKTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLR--LREKYGDVFTVYLGSRPVVV 58
Query: 114 VTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHVLH 172
+ + E L F+ R + + G+ + G++W+ +R+ +A+
Sbjct: 59 LCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGY--GVIFANGERWRALRRFSLATMRDF 116
Query: 173 SVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMFSR 228
+ S+ + +EEA LV + +R + ++++ L+ N+I I+F +
Sbjct: 117 GMGKRSVEERIQEEARCLV-----EELRKSKGALLDNTLLFHSITSNIICSIVFGK 167
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 85/176 (48%), Gaps = 10/176 (5%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMRELNTNICCIRLGNVHVIP 113
+A++ + + LPPGP+P P++G+L +M R ++ +RE ++ + LG+ V+
Sbjct: 1 MAKKTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLR--LREKYGDVFTVYLGSRPVVV 58
Query: 114 VTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHVLH 172
+ + E L F+ R + + G+ + G++W+ +R+ +A+
Sbjct: 59 LCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGY--GVIFANGERWRALRRFSLATMRDF 116
Query: 173 SVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMFSR 228
+ S+ + +EEA LV + +R + ++++ L+ N+I I+F +
Sbjct: 117 GMGKRSVEERIQEEARCLV-----EELRKSKGALLDNTLLFHSITSNIICSIVFGK 167
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 57 ERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMRELNTNICCIRLGNVHVIPVTS 116
++ K PPGP WP++G+ + + L R ++ IRLG+ ++ +
Sbjct: 3 KKTSSKGKPPGPFAWPLIGNAAAV--GQAAHLSFARLARRYG-DVFQIRLGSCPIVVLNG 59
Query: 117 PEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKVVAS 168
+ L S FA RP +SGG S+A + + WK R+ S
Sbjct: 60 ERAIHQALVQQGSAFADRPSFASFRVVSGG-RSMAFGHYSEHWKVQRRAAHS 110
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMR--ELNTNICCIRLGNVHV 111
+A++ + + LPPGP P P +G+ ++ T + + LM+ E + I LG V
Sbjct: 1 MAKKTSSKGKLPPGPTPLPFIGNYLQLN----TEQMYNSLMKISERYGPVFTIHLGPRRV 56
Query: 112 IPVTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHV 170
+ + + E L F+ R +++ G+ V G++ K++R+ +A+
Sbjct: 57 VVLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGY--GVVFSNGERAKQLRRFSIATLR 114
Query: 171 LHSVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMF 226
V + + +EEA L+ +R + I+ R NVI I+F
Sbjct: 115 DFGVGKRGIEERIQEEAGFLID-----ALRGTGGANIDPTFFLSRTVSNVISSIVF 165
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMR--ELNTNICCIRLGNVHV 111
+A++ + + LPPGP P P +G+ ++ T + + LM+ E + I LG V
Sbjct: 1 MAKKTSSKGKLPPGPTPLPFIGNYLQLN----TEQMYNSLMKISERYGPVFTIHLGPRRV 56
Query: 112 IPVTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHV 170
+ + + E L F+ R +++ G+ V G++ K++R+ +A+
Sbjct: 57 VVLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGY--GVVFSNGERAKQLRRFSIATLR 114
Query: 171 LHSVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMF 226
V + + +EEA L+ +R + I+ R NVI I+F
Sbjct: 115 DFGVGKRGIEERIQEEAGFLID-----ALRGTGGANIDPTFFLSRTVSNVISSIVF 165
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMR--ELNTNICCIRLGNVHV 111
+A++ + + LPPGP P P +G+ ++ T + + LM+ E + I LG V
Sbjct: 1 MAKKTSSKGKLPPGPTPLPFIGNYLQLN----TEQMYNSLMKISERYGPVFTIHLGPRRV 56
Query: 112 IPVTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHV 170
+ + + E L F+ R +++ G+ V G++ K++R+ +A+
Sbjct: 57 VVLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGY--GVVFSNGERAKQLRRFSIATLR 114
Query: 171 LHSVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMF 226
V + + +EEA L+ +R + I+ R NVI I+F
Sbjct: 115 DFGVGKRGIEERIQEEAGFLID-----ALRGTGGANIDPTFFLSRTVSNVISSIVF 165
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMR--ELNTNICCIRLGNVHV 111
+A++ + + LPPGP P P +G+ ++ T + + LM+ E + I LG V
Sbjct: 1 MAKKTSSKGKLPPGPTPLPFIGNYLQLN----TEQMYNSLMKISERYGPVFTIHLGPRRV 56
Query: 112 IPVTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHV 170
+ + + E L F+ R ++L G+ G++ K++R+ +A+
Sbjct: 57 VVLCGHDAVKEALVDQAEEFSGRGEQATFDWLFKGY--GVAFSNGERAKQLRRFSIATLR 114
Query: 171 LHSVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMFS 227
V + + +EEA L+ +R + I+ R NVI I+F
Sbjct: 115 GFGVGKRGIEERIQEEAGFLID-----ALRGTHGANIDPTFFLSRTVSNVISSIVFG 166
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMR--ELNTNICCIRLGNVHV 111
+A++ + + LPPGP P P +G+ ++ T + + LM+ E + I LG V
Sbjct: 1 MAKKTSSKGKLPPGPTPLPFIGNYLQLN----TEQMYNSLMKISERYGPVFTIHLGPRRV 56
Query: 112 IPVTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHV 170
+ + + E L F+ R +++ G+ V G++ K++R+ +A+
Sbjct: 57 VVLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGY--GVVFSNGERAKQLRRFSIATLR 114
Query: 171 LHSVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMF 226
V + + +EEA L+ +R + I+ R NVI I+F
Sbjct: 115 DFGVGKRGIEERIQEEAGFLID-----ALRGTGGANIDPTFFLSRTVSNVISSIVF 165
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSLPEMWRNKPTFKWIHGLMR--ELNTNICCIRLGNVHV 111
+A++ + + LPPGP P P +G+ ++ T + + LM+ E + I LG V
Sbjct: 1 MAKKTSSKGKLPPGPTPLPFIGNYLQLN----TEQMYNSLMKISERYGPVFTIHLGPRRV 56
Query: 112 IPVTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKV-VASHV 170
+ + + E L F+ R +++ G+ V G++ K++R+ +A+
Sbjct: 57 VVLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGY--GVVFSNGERAKQLRRFSIATLR 114
Query: 171 LHSVRLDSLLVKRREEAEELVSFVYNQCIRNNVDSVINVRLVARRYCGNVIRKIMF 226
V + + +EEA L+ +R + I+ R NVI I+F
Sbjct: 115 DFGVGKRGIEERIQEEAGFLID-----ALRGTGGANIDPTFFLSRTVSNVISSIVF 165
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 66 PGPAPWPIVGSLPEMWRNKPTFKWIHGLMRELNT---------NICCIRLGNVHVIPVTS 116
PGP WP++GSL E++ W GL ++ +T I ++LG+ + + S
Sbjct: 27 PGPTNWPLLGSLLEIF-------WKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGS 79
Query: 117 PEIALEFLKVHDSVFASR----PLTMGTEYLSGGFLSIAVVPWGQQWKKMRKVVASHVLH 172
P + LE L +S R P ++ + + + + GQ+W+++R ++
Sbjct: 80 PSL-LEALYRTESAHPQRLEIKPWKAYRDHRNEAYGLMILE--GQEWQRVRSAFQKKLMK 136
Query: 173 SVRLDSL 179
V + L
Sbjct: 137 PVEIMKL 143
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 72 PIVGSLPEMWRNKPTFKWIHGLMRELNTNICCIRLGNVHVIPVTSPEIALEFLKVHDSVF 131
P+VGSLP + R+ L ++ I +R+G + V ++A E L F
Sbjct: 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGP-IYSVRMGTKTTVIVGHHQLAKEVLIKKGKDF 75
Query: 132 ASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRKVVAS 168
+ RP + S IA G W+ R++ +
Sbjct: 76 SGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMA 112
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSL-----PEMWRNKPTFKWIHGLMRELNTNICCIRLGN 108
+A++ + + LPPGP P+PI+G++ ++ ++ F +G + + LG
Sbjct: 1 MAKKTSSKGKLPPGPTPFPIIGNILQIDAKDISKSLTKFSECYG-------PVFTVYLGM 53
Query: 109 VHVIPVTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRK 164
+ + E E L FA R E +S G L IA + WK+MR+
Sbjct: 54 KPTVVLHGYEAVKEALVDLGEEFAGRGSVPILEKVSKG-LGIA-FSNAKTWKEMRR 107
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSL-----PEMWRNKPTFKWIHGLMRELNTNICCIRLGN 108
+A++ + + LPPGP P PI+G++ ++ ++ F ++G + + G
Sbjct: 1 MAKKTSSKGKLPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYG-------PVFTVYFGM 53
Query: 109 VHVIPVTSPEIALEFLKVHDSVFASRPLTMGTEYLSGGFLSIAVVPWGQQWKKMRK 164
++ E E L + F+ R + ++ ++ G I+ G++WK++R+
Sbjct: 54 NPIVVFHGYEAVKEALIDNGEEFSGRGNSPISQRITKGLGIIS--SNGKRWKEIRR 107
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 65 PPGPAPWPIVGSLPEMWRNKPTFKWIHGLMRELNTNICCIRLGNVHVIPVTSPEIALEFL 124
PPGP WP++G + + +N P M + ++ IR+G+ V+ ++ + + L
Sbjct: 13 PPGPWGWPLIGHMLTLGKN-PHLAL--SRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQAL 69
Query: 125 KVHDSVFASRPLTMGTEYLSGGFLSIAVVP-WGQQWKKMRKVV 166
F RP +S G S++ P G W R++
Sbjct: 70 VRQGDDFKGRPDLYTFTLISNG-QSMSFSPDSGPVWAARRRLA 111
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
4- Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
4- Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 54 VARERNKRKPLPPGPAPWPIVGSL 77
+A++ + + LPPGP P PI+G+L
Sbjct: 1 MAKKTSSKGKLPPGPFPLPIIGNL 24
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 61 RKPLPPGPAPWPIVGSL 77
R LPPGP P P++G++
Sbjct: 9 RGKLPPGPTPLPVIGNI 25
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 61 RKPLPPGPAPWPIVGSL 77
R LPPGP P P++G++
Sbjct: 9 RGKLPPGPTPLPVIGNI 25
>pdb|4EH1|A Chain A, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
pdb|4EH1|B Chain B, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
Length = 243
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 141 EYLSGGFLSIAVVPWGQQWKKMRKVVASHVLHSVRLDSLLVKRREEAEELVSFVYNQCIR 200
+Y G ++ I V P G ++++R+ SH + R + VKR + V + +
Sbjct: 33 DYQPGQYIGIEVTPEGSDYREIRQYSLSHASNG-REYRISVKREGVGSDNPGLV-SHYLH 90
Query: 201 NNVDSVINVRLVA 213
NNV +V+L A
Sbjct: 91 NNVKVGDSVKLYA 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,395,125
Number of Sequences: 62578
Number of extensions: 247248
Number of successful extensions: 637
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 30
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)