Query 040506
Match_columns 365
No_of_seqs 182 out of 1309
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1770 PtrB Protease II [Amin 100.0 8.7E-68 1.9E-72 514.9 36.9 329 9-365 2-386 (682)
2 PF02897 Peptidase_S9_N: Proly 100.0 1E-60 2.2E-65 469.4 36.5 326 13-365 1-394 (414)
3 PRK10115 protease 2; Provision 100.0 1.9E-53 4.2E-58 438.2 42.0 326 13-365 2-384 (686)
4 KOG2237 Predicted serine prote 100.0 1.1E-49 2.4E-54 385.4 26.6 335 10-365 3-405 (712)
5 COG1505 Serine proteases of th 100.0 5.9E-35 1.3E-39 282.1 27.2 308 30-365 2-363 (648)
6 TIGR02800 propeller_TolB tol-p 98.9 9E-08 1.9E-12 94.0 20.2 232 51-317 117-399 (417)
7 PRK04792 tolB translocation pr 98.0 0.0017 3.8E-08 64.6 22.6 155 153-317 222-427 (448)
8 PRK00178 tolB translocation pr 97.7 0.006 1.3E-07 60.3 20.9 141 153-317 247-408 (430)
9 PRK04922 tolB translocation pr 97.6 0.011 2.4E-07 58.6 21.2 141 153-317 252-413 (433)
10 PRK04043 tolB translocation pr 97.6 0.018 3.9E-07 56.9 22.3 141 154-318 238-403 (419)
11 PRK05137 tolB translocation pr 97.6 0.03 6.6E-07 55.5 23.5 88 153-246 206-323 (435)
12 PRK01029 tolB translocation pr 97.3 0.044 9.4E-07 54.3 21.1 147 153-318 235-406 (428)
13 PRK00178 tolB translocation pr 97.3 0.027 5.8E-07 55.6 19.1 144 152-318 202-366 (430)
14 PRK03629 tolB translocation pr 97.3 0.12 2.6E-06 51.2 23.6 97 217-317 291-408 (429)
15 PRK04043 tolB translocation pr 97.3 0.04 8.6E-07 54.4 19.8 141 153-318 192-360 (419)
16 PRK02889 tolB translocation pr 97.2 0.1 2.2E-06 51.7 22.3 141 153-317 244-405 (427)
17 PRK02889 tolB translocation pr 97.2 0.027 5.9E-07 55.7 17.9 144 152-318 199-363 (427)
18 PRK04922 tolB translocation pr 97.1 0.11 2.4E-06 51.5 20.8 144 152-318 207-371 (433)
19 PRK04792 tolB translocation pr 96.9 0.03 6.4E-07 55.8 15.2 87 153-245 266-382 (448)
20 PRK05137 tolB translocation pr 96.8 0.038 8.3E-07 54.8 15.0 33 153-187 250-282 (435)
21 PRK03629 tolB translocation pr 96.7 0.044 9.6E-07 54.3 14.3 88 152-245 246-363 (429)
22 PRK01742 tolB translocation pr 96.6 0.78 1.7E-05 45.4 22.9 156 152-317 207-406 (429)
23 KOG2237 Predicted serine prote 96.4 0.023 5E-07 57.3 10.0 107 131-243 107-215 (712)
24 PRK01029 tolB translocation pr 96.2 0.097 2.1E-06 51.9 13.3 73 153-245 331-403 (428)
25 COG0823 TolB Periplasmic compo 95.8 0.13 2.8E-06 50.9 12.0 76 152-233 241-346 (425)
26 TIGR02800 propeller_TolB tol-p 95.6 0.61 1.3E-05 45.5 16.3 87 153-245 238-354 (417)
27 PF02897 Peptidase_S9_N: Proly 95.6 0.5 1.1E-05 46.3 15.4 74 90-185 181-262 (414)
28 KOG2110 Uncharacterized conser 93.8 0.73 1.6E-05 43.6 10.5 90 131-243 152-246 (391)
29 COG4946 Uncharacterized protei 93.3 8.4 0.00018 38.1 17.1 125 150-307 403-542 (668)
30 KOG0279 G protein beta subunit 93.1 2.4 5.1E-05 38.9 12.3 49 135-188 175-227 (315)
31 KOG0272 U4/U6 small nuclear ri 92.9 1.4 3.1E-05 42.4 11.1 134 149-295 262-441 (459)
32 PF07676 PD40: WD40-like Beta 92.7 0.24 5.1E-06 31.0 4.0 26 153-178 13-38 (39)
33 PF08662 eIF2A: Eukaryotic tra 91.8 1.1 2.5E-05 39.1 8.8 62 151-233 103-164 (194)
34 PRK01742 tolB translocation pr 90.9 13 0.00029 36.6 16.2 67 160-244 168-235 (429)
35 TIGR02658 TTQ_MADH_Hv methylam 90.6 1.7 3.8E-05 41.7 9.3 79 155-244 52-135 (352)
36 COG0823 TolB Periplasmic compo 90.6 5.9 0.00013 39.2 13.2 120 154-318 198-317 (425)
37 KOG1446 Histone H3 (Lys4) meth 89.9 11 0.00023 35.2 13.2 90 133-243 123-215 (311)
38 PF14583 Pectate_lyase22: Olig 89.7 1.5 3.2E-05 42.4 7.9 38 150-187 239-276 (386)
39 COG4946 Uncharacterized protei 89.6 12 0.00026 37.0 13.8 146 151-318 81-259 (668)
40 PF02239 Cytochrom_D1: Cytochr 88.9 3 6.5E-05 40.5 9.6 69 152-245 40-108 (369)
41 PF02239 Cytochrom_D1: Cytochr 87.8 6.5 0.00014 38.1 11.2 33 153-189 82-114 (369)
42 PF08662 eIF2A: Eukaryotic tra 87.6 6.4 0.00014 34.4 10.1 72 151-245 62-133 (194)
43 KOG1446 Histone H3 (Lys4) meth 87.0 2.7 5.8E-05 39.0 7.4 64 150-234 189-254 (311)
44 KOG4497 Uncharacterized conser 85.6 4.8 0.0001 37.9 8.3 31 153-189 13-43 (447)
45 KOG2048 WD40 repeat protein [G 85.5 48 0.001 34.2 18.1 123 191-318 355-508 (691)
46 PF00930 DPPIV_N: Dipeptidyl p 85.2 4.8 0.0001 38.6 8.8 75 90-186 195-271 (353)
47 KOG0283 WD40 repeat-containing 85.1 3.4 7.3E-05 42.9 7.8 29 151-184 270-298 (712)
48 TIGR02658 TTQ_MADH_Hv methylam 84.8 7.8 0.00017 37.3 9.8 73 154-245 253-330 (352)
49 KOG0771 Prolactin regulatory e 84.3 3.5 7.7E-05 39.6 7.0 33 150-188 188-220 (398)
50 PF10282 Lactonase: Lactonase, 84.3 28 0.0006 33.2 13.5 68 150-234 246-313 (345)
51 PF07433 DUF1513: Protein of u 83.9 34 0.00073 32.2 13.2 33 151-183 53-85 (305)
52 PF00930 DPPIV_N: Dipeptidyl p 83.7 42 0.00091 32.1 15.6 81 149-246 184-269 (353)
53 KOG1539 WD repeat protein [Gen 83.3 4.6 0.0001 42.3 7.8 34 150-188 578-611 (910)
54 KOG2111 Uncharacterized conser 83.1 9.6 0.00021 35.7 9.1 64 152-234 185-248 (346)
55 PRK10115 protease 2; Provision 83.1 60 0.0013 34.4 16.4 76 89-186 182-260 (686)
56 KOG0271 Notchless-like WD40 re 82.5 4.4 9.5E-05 38.8 6.8 63 154-243 121-185 (480)
57 TIGR03866 PQQ_ABC_repeats PQQ- 82.3 9.8 0.00021 34.4 9.3 76 153-244 161-236 (300)
58 KOG0315 G-protein beta subunit 81.8 18 0.00038 33.0 9.9 35 149-188 168-202 (311)
59 KOG0315 G-protein beta subunit 81.6 9.3 0.0002 34.7 8.2 78 156-241 91-195 (311)
60 KOG0263 Transcription initiati 81.5 13 0.00027 38.7 10.1 34 150-188 537-570 (707)
61 KOG0263 Transcription initiati 80.3 1.5 3.2E-05 45.3 3.1 71 150-245 579-649 (707)
62 KOG0293 WD40 repeat-containing 79.7 8.5 0.00018 37.3 7.7 85 150-246 271-385 (519)
63 KOG0286 G-protein beta subunit 79.4 7.8 0.00017 35.9 7.1 60 150-230 231-291 (343)
64 TIGR03866 PQQ_ABC_repeats PQQ- 78.6 26 0.00056 31.6 10.8 31 154-188 36-66 (300)
65 KOG1539 WD repeat protein [Gen 78.5 98 0.0021 33.0 16.0 184 134-351 436-631 (910)
66 PF14583 Pectate_lyase22: Olig 77.1 15 0.00032 35.7 8.7 72 153-229 40-141 (386)
67 PRK11028 6-phosphogluconolacto 76.8 62 0.0013 30.3 13.1 61 153-231 232-292 (330)
68 KOG2055 WD40 repeat protein [G 76.3 10 0.00022 37.2 7.2 77 150-235 305-410 (514)
69 KOG2394 WD40 protein DMR-N9 [G 75.2 3.5 7.7E-05 41.1 3.9 33 150-187 292-324 (636)
70 PF07676 PD40: WD40-like Beta 73.7 12 0.00025 23.0 4.9 27 215-241 11-39 (39)
71 COG1770 PtrB Protease II [Amin 73.3 1.2E+02 0.0027 31.6 16.6 78 89-189 184-262 (682)
72 KOG4378 Nuclear protein COP1 [ 72.8 29 0.00062 34.7 9.4 80 153-243 169-278 (673)
73 KOG0291 WD40-repeat-containing 72.0 1.4E+02 0.003 31.6 15.4 91 148-245 350-466 (893)
74 KOG0318 WD40 repeat stress pro 71.5 92 0.002 31.4 12.5 92 83-188 170-270 (603)
75 KOG0643 Translation initiation 70.7 64 0.0014 29.8 10.5 66 155-243 59-126 (327)
76 KOG0272 U4/U6 small nuclear ri 69.3 14 0.00031 35.9 6.4 69 151-242 348-417 (459)
77 KOG0296 Angio-associated migra 68.8 18 0.00039 34.6 6.8 29 155-188 197-225 (399)
78 KOG0266 WD40 repeat-containing 66.4 30 0.00066 34.5 8.6 86 148-244 203-317 (456)
79 KOG0299 U3 snoRNP-associated p 66.0 26 0.00055 34.5 7.4 35 150-189 204-238 (479)
80 PTZ00421 coronin; Provisional 64.1 74 0.0016 32.2 10.9 33 151-188 171-203 (493)
81 KOG0266 WD40 repeat-containing 63.9 43 0.00093 33.4 9.1 34 151-189 249-282 (456)
82 KOG0291 WD40-repeat-containing 62.7 73 0.0016 33.6 10.2 61 170-233 453-541 (893)
83 COG2706 3-carboxymuconate cycl 62.6 1.1E+02 0.0025 29.1 10.9 45 140-186 234-279 (346)
84 PTZ00420 coronin; Provisional 62.5 58 0.0013 33.6 9.8 34 150-187 127-160 (568)
85 KOG1916 Nuclear protein, conta 60.1 10 0.00023 40.4 3.9 44 137-184 228-271 (1283)
86 TIGR02171 Fb_sc_TIGR02171 Fibr 59.6 85 0.0018 34.0 10.5 62 162-245 320-385 (912)
87 PRK02888 nitrous-oxide reducta 59.1 1.1E+02 0.0023 32.0 10.8 24 218-243 326-349 (635)
88 PF10313 DUF2415: Uncharacteri 58.7 24 0.00053 22.8 4.1 28 153-185 5-35 (43)
89 KOG0271 Notchless-like WD40 re 56.4 2E+02 0.0043 28.0 12.3 49 135-189 140-193 (480)
90 KOG0305 Anaphase promoting com 56.3 1E+02 0.0023 31.0 10.1 37 150-189 345-382 (484)
91 KOG0293 WD40 repeat-containing 56.1 47 0.001 32.4 7.2 34 151-189 398-431 (519)
92 PF10647 Gmad1: Lipoprotein Lp 54.5 1.2E+02 0.0025 27.6 9.6 36 134-174 102-137 (253)
93 KOG0296 Angio-associated migra 53.5 66 0.0014 30.9 7.6 75 150-232 108-210 (399)
94 PF05787 DUF839: Bacterial pro 53.2 1.7E+02 0.0038 29.8 11.4 81 147-232 434-521 (524)
95 TIGR02171 Fb_sc_TIGR02171 Fibr 52.9 12 0.00026 40.1 3.1 32 154-185 355-387 (912)
96 KOG0273 Beta-transducin family 51.5 74 0.0016 31.6 7.9 33 150-187 454-486 (524)
97 KOG0639 Transducin-like enhanc 51.5 78 0.0017 31.8 8.0 30 151-185 468-497 (705)
98 KOG1408 WD40 repeat protein [F 50.1 62 0.0014 33.9 7.4 53 133-188 59-115 (1080)
99 cd00200 WD40 WD40 domain, foun 50.1 88 0.0019 27.0 8.0 34 150-188 179-212 (289)
100 PTZ00420 coronin; Provisional 50.1 97 0.0021 32.0 9.0 33 151-188 170-202 (568)
101 PRK11028 6-phosphogluconolacto 49.7 2.1E+02 0.0046 26.6 10.9 25 218-244 131-155 (330)
102 KOG0275 Conserved WD40 repeat- 49.6 19 0.00041 33.9 3.4 33 151-188 216-248 (508)
103 KOG1445 Tumor-specific antigen 47.7 1.5E+02 0.0032 30.9 9.4 70 152-243 724-796 (1012)
104 KOG0973 Histone transcription 46.4 37 0.0008 36.7 5.4 91 151-246 132-254 (942)
105 KOG0318 WD40 repeat stress pro 45.9 1.4E+02 0.0031 30.2 8.9 74 150-246 445-518 (603)
106 KOG0289 mRNA splicing factor [ 45.9 2.4E+02 0.0052 27.9 10.2 17 171-187 365-381 (506)
107 KOG0650 WD40 repeat nucleolar 45.7 3.7E+02 0.0079 27.9 12.7 40 151-198 403-442 (733)
108 KOG0299 U3 snoRNP-associated p 45.6 1.9E+02 0.0042 28.6 9.6 17 171-187 344-360 (479)
109 KOG1407 WD40 repeat protein [F 45.2 1.3E+02 0.0028 27.7 7.9 32 153-189 111-142 (313)
110 KOG2096 WD40 repeat protein [G 44.9 1E+02 0.0022 29.2 7.4 15 153-167 233-247 (420)
111 cd00200 WD40 WD40 domain, foun 44.8 1.4E+02 0.003 25.7 8.4 32 151-187 12-43 (289)
112 KOG0283 WD40 repeat-containing 44.8 1.1E+02 0.0023 32.3 8.3 34 150-188 453-486 (712)
113 PF13449 Phytase-like: Esteras 44.2 2.8E+02 0.0061 26.1 11.5 87 151-245 149-251 (326)
114 KOG2055 WD40 repeat protein [G 43.8 1.4E+02 0.0031 29.6 8.4 36 150-189 259-294 (514)
115 KOG4547 WD40 repeat-containing 43.8 86 0.0019 31.8 7.2 32 150-188 146-177 (541)
116 PF03088 Str_synth: Strictosid 43.7 32 0.00069 26.0 3.4 31 131-169 47-77 (89)
117 PF15492 Nbas_N: Neuroblastoma 43.7 25 0.00053 32.5 3.2 27 154-185 49-75 (282)
118 KOG1273 WD40 repeat protein [G 43.3 84 0.0018 29.7 6.6 51 134-189 47-101 (405)
119 KOG0279 G protein beta subunit 42.1 62 0.0013 30.0 5.5 88 129-230 211-301 (315)
120 TIGR02276 beta_rpt_yvtn 40-res 41.7 59 0.0013 19.8 4.0 34 158-198 1-34 (42)
121 PTZ00421 coronin; Provisional 41.4 3.9E+02 0.0085 27.0 12.0 34 150-188 127-161 (493)
122 KOG0640 mRNA cleavage stimulat 40.5 74 0.0016 30.0 5.8 48 134-186 196-249 (430)
123 KOG1274 WD40 repeat protein [G 40.2 5.2E+02 0.011 28.1 15.8 44 131-186 86-129 (933)
124 PF06433 Me-amine-dh_H: Methyl 40.1 3.1E+02 0.0066 26.4 10.0 88 152-250 39-131 (342)
125 PF10282 Lactonase: Lactonase, 39.6 77 0.0017 30.2 6.2 33 153-187 296-328 (345)
126 KOG0310 Conserved WD40 repeat- 37.4 2.5E+02 0.0055 28.0 9.1 80 150-235 198-302 (487)
127 KOG0316 Conserved WD40 repeat- 36.6 50 0.0011 29.9 3.9 34 151-189 186-219 (307)
128 KOG4640 Anaphase-promoting com 36.5 54 0.0012 33.7 4.6 32 152-188 66-97 (665)
129 KOG2096 WD40 repeat protein [G 36.2 1.6E+02 0.0034 28.0 7.2 41 137-184 77-117 (420)
130 COG5497 Predicted secreted pro 36.0 71 0.0015 28.5 4.7 35 155-189 28-66 (228)
131 KOG1274 WD40 repeat protein [G 35.9 2.2E+02 0.0049 30.7 9.0 34 150-188 140-173 (933)
132 COG3490 Uncharacterized protei 35.6 1E+02 0.0022 28.8 5.9 52 131-184 90-149 (366)
133 PF10647 Gmad1: Lipoprotein Lp 35.5 3.4E+02 0.0073 24.6 10.7 32 151-184 26-57 (253)
134 KOG2139 WD40 repeat protein [G 35.3 2.3E+02 0.0049 27.5 8.2 39 147-189 194-232 (445)
135 KOG0288 WD40 repeat protein Ti 34.0 43 0.00092 32.6 3.3 32 151-187 390-421 (459)
136 KOG0306 WD40-repeat-containing 33.4 57 0.0012 34.3 4.3 39 153-196 513-551 (888)
137 COG3386 Gluconolactonase [Carb 32.8 1.5E+02 0.0033 27.9 6.8 32 148-183 162-193 (307)
138 KOG1063 RNA polymerase II elon 32.6 6.2E+02 0.013 26.7 12.7 38 148-185 525-562 (764)
139 KOG0645 WD40 repeat protein [G 31.7 3.1E+02 0.0066 25.5 8.1 72 149-243 62-133 (312)
140 KOG0282 mRNA splicing factor [ 31.3 3.1E+02 0.0067 27.4 8.6 85 151-243 345-460 (503)
141 PF12894 Apc4_WD40: Anaphase-p 30.8 1.6E+02 0.0034 19.3 5.0 30 151-186 14-43 (47)
142 PF07433 DUF1513: Protein of u 30.8 94 0.002 29.3 5.0 34 151-188 219-252 (305)
143 KOG0295 WD40 repeat-containing 30.5 3.6E+02 0.0079 26.0 8.7 30 151-185 238-267 (406)
144 PF09748 Med10: Transcription 29.7 63 0.0014 26.2 3.2 45 36-80 71-120 (128)
145 KOG2048 WD40 repeat protein [G 29.4 74 0.0016 32.9 4.2 32 151-187 478-509 (691)
146 KOG0305 Anaphase promoting com 29.3 2.1E+02 0.0044 29.0 7.3 33 151-188 220-252 (484)
147 PF05096 Glu_cyclase_2: Glutam 29.2 1.5E+02 0.0032 27.4 5.8 41 278-318 38-79 (264)
148 KOG0313 Microtubule binding pr 29.0 3.3E+02 0.0072 26.5 8.2 34 150-189 262-295 (423)
149 PF00400 WD40: WD domain, G-be 28.9 88 0.0019 18.5 3.2 26 151-181 14-39 (39)
150 COG4831 Roadblock/LC7 domain [ 28.1 63 0.0014 24.7 2.7 18 147-166 13-30 (109)
151 KOG0285 Pleiotropic regulator 27.7 1.1E+02 0.0024 29.5 4.8 31 153-188 156-186 (460)
152 KOG4497 Uncharacterized conser 27.0 3.1E+02 0.0066 26.3 7.5 64 150-235 93-156 (447)
153 KOG0267 Microtubule severing p 27.0 64 0.0014 33.8 3.3 35 150-189 156-190 (825)
154 KOG2394 WD40 protein DMR-N9 [G 26.8 62 0.0013 32.7 3.1 33 152-189 336-368 (636)
155 KOG2315 Predicted translation 26.5 6.2E+02 0.013 25.9 9.9 33 153-187 316-348 (566)
156 KOG1407 WD40 repeat protein [F 26.3 89 0.0019 28.8 3.8 48 134-187 213-265 (313)
157 KOG2314 Translation initiation 25.7 70 0.0015 32.5 3.3 37 151-187 252-294 (698)
158 PF08450 SGL: SMP-30/Gluconola 25.2 2.4E+02 0.0052 25.0 6.6 30 151-184 136-165 (246)
159 KOG0275 Conserved WD40 repeat- 25.1 1E+02 0.0022 29.2 4.0 31 153-188 268-298 (508)
160 PF14243 DUF4343: Domain of un 25.0 97 0.0021 25.1 3.6 33 211-243 92-124 (130)
161 KOG1273 WD40 repeat protein [G 24.9 2.8E+02 0.006 26.4 6.8 30 153-187 28-57 (405)
162 PF11974 MG1: Alpha-2-macroglo 24.7 3.2E+02 0.0069 20.8 6.6 25 170-194 10-36 (97)
163 PRK13616 lipoprotein LpqB; Pro 24.1 8.3E+02 0.018 25.4 15.6 144 151-316 352-528 (591)
164 KOG0641 WD40 repeat protein [G 23.7 5.5E+02 0.012 23.2 9.4 36 149-189 232-267 (350)
165 KOG0278 Serine/threonine kinas 23.7 5.8E+02 0.013 23.5 13.0 118 172-314 162-298 (334)
166 PF09142 TruB_C: tRNA Pseudour 23.6 74 0.0016 21.7 2.2 24 155-179 31-54 (56)
167 PF07932 DAP_C: D-aminopeptida 23.5 1E+02 0.0022 23.5 3.0 36 257-292 47-84 (97)
168 KOG0276 Vesicle coat complex C 23.3 3.2E+02 0.007 28.4 7.4 18 171-188 73-90 (794)
169 TIGR03074 PQQ_membr_DH membran 23.0 4E+02 0.0087 28.7 8.6 43 159-208 690-732 (764)
170 KOG4227 WD40 repeat protein [G 22.9 3.5E+02 0.0076 26.4 7.2 30 149-183 57-86 (609)
171 PF07646 Kelch_2: Kelch motif; 22.3 1.1E+02 0.0024 19.6 2.9 32 156-187 8-42 (49)
172 KOG0771 Prolactin regulatory e 22.2 3.9E+02 0.0084 26.1 7.4 72 150-243 283-354 (398)
173 PF01731 Arylesterase: Arylest 22.1 1.9E+02 0.0041 21.6 4.4 46 134-183 38-84 (86)
174 PF03646 FlaG: FlaG protein; 21.6 98 0.0021 23.9 2.9 32 156-188 50-81 (107)
175 KOG0772 Uncharacterized conser 20.8 2.7E+02 0.0059 28.2 6.2 31 147-182 316-346 (641)
176 KOG0295 WD40 repeat-containing 20.8 1.2E+02 0.0027 29.1 3.8 31 151-186 337-367 (406)
177 PF01011 PQQ: PQQ enzyme repea 20.4 1.9E+02 0.0041 17.5 3.5 21 176-199 11-31 (38)
178 KOG0310 Conserved WD40 repeat- 20.2 4.7E+02 0.01 26.2 7.6 31 153-188 73-103 (487)
179 KOG0265 U5 snRNP-specific prot 20.2 5.2E+02 0.011 24.4 7.5 69 150-240 92-160 (338)
180 KOG0278 Serine/threonine kinas 20.2 6.2E+02 0.013 23.4 7.8 33 150-187 226-258 (334)
No 1
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-68 Score=514.92 Aligned_cols=329 Identities=33% Similarity=0.569 Sum_probs=305.9
Q ss_pred CCCCCCCCCCCCeEEccCCCeeecccccccCCC--ChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCC
Q 040506 9 SSPPPPVPKKIPYEASAHGLTWQDPYHWMKNTN--DPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPP 86 (365)
Q Consensus 9 ~~~~~P~a~~~~~~~~~hG~~~~DpY~WLed~~--~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p 86 (365)
+.|.||+|+|.|+..+.||.++.|+|+||+|.+ +|+|++||+|||+||++.|+++++|+++|++||+.++++++.|+|
T Consensus 2 ~~p~pP~a~k~~~~~~~hg~~~~D~Y~WlRd~~~~~p~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp 81 (682)
T COG1770 2 NLPLPPIAKKVPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVP 81 (682)
T ss_pred CCCCCCCccccceeeeecCceeecchHhhhCCcccChHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCc
Confidence 456799999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred eeeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEE
Q 040506 87 ERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYT 166 (365)
Q Consensus 87 ~~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~ 166 (365)
.+.|+|+||.|...|++|+++||++.. +...||+|||+|++|+++.|+.+|.+.+|||++++||+
T Consensus 82 ~~~~~~~Yy~r~~~g~~y~~~~R~~~~---------------g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s 146 (682)
T COG1770 82 YRKGPYEYYSRTEEGKEYPIYCRQPDE---------------GGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYS 146 (682)
T ss_pred cccCCeeEEEEecCCCcceeEEeccCC---------------CCCceeEeecchhccCcccceeeeeeeeCCCCceEEEE
Confidence 999999999999999999999997643 11258999999999999999999999999999999999
Q ss_pred EcCCCCeEEEEEEEECCCCcccC-------------------------------eEEEEECCCCCCCCccEEeeCCCCeE
Q 040506 167 IDTSGDEQFMLQIKDLRNQCIVP-------------------------------RVLCTKLGSDSTDDAPIFTEGDSGFC 215 (365)
Q Consensus 167 ~d~~G~e~~~l~v~Dl~tg~~l~-------------------------------~v~~h~lGt~~~~d~lvf~e~d~~~~ 215 (365)
+|..|+|+|+|+|+||+||+.++ +||+|++|+++.+|++||+|+|+.|+
T Consensus 147 ~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~ 226 (682)
T COG1770 147 VDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFF 226 (682)
T ss_pred EecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEE
Confidence 99999999999999999998875 89999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEeCCCcceEEEEEeCCC---------------ceeecCc--------cccCCcEEEEEEecCcCCC
Q 040506 216 VDITSTKDGKFITVNSNSRASSEEGLCDRCD---------------QSISENE--------ECSSGDYYLARCRAEKLYS 272 (365)
Q Consensus 216 ~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~---------------~~~~~~~--------~~~~~~~~l~~~~~~~~~~ 272 (365)
+++.+|.+++||+|.+++..+||+++++.+. +|.++|+ |.+|.+|.|+++++ .+++
T Consensus 227 ~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~l~~ap~-~~~~ 305 (682)
T COG1770 227 LSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAPV-SADK 305 (682)
T ss_pred EEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceEEEEccC-CCCh
Confidence 9999999999999999999999999999442 4555543 34678999999999 7888
Q ss_pred CCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccccccccchhcCCCccccCCCCCeeeeecCCCCCCC
Q 040506 273 ANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFM 352 (365)
Q Consensus 273 ~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~ 352 (365)
++|+++|+|+++..|++|.+|+++||+.+|++|.|+|++.+.+++. ++.|.||+.+++++++.|.+|+
T Consensus 306 ~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~------------~~~i~f~~~ay~~~l~~~~e~~ 373 (682)
T COG1770 306 SNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGE------------ERGIAFDDEAYSAGLSGNPEFD 373 (682)
T ss_pred hcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCc------------eeeEEecchhhhccccCCCCCC
Confidence 9999999999999999999999999999999999999999987553 3569999999999999999999
Q ss_pred CCEEEEEEeccCC
Q 040506 353 SSVYRAVLSSPVV 365 (365)
Q Consensus 353 s~~~~~~~sS~~~ 365 (365)
++.|||+|+||+|
T Consensus 374 s~~lR~~ysS~tt 386 (682)
T COG1770 374 SDRLRYSYSSMTT 386 (682)
T ss_pred CccEEEEeecccc
Confidence 9999999999986
No 2
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=100.00 E-value=1e-60 Score=469.44 Aligned_cols=326 Identities=33% Similarity=0.524 Sum_probs=266.6
Q ss_pred CCCCCCCCeEEccCCCeeecccccccCCCChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCCeeeCCe
Q 040506 13 PPVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGPW 92 (365)
Q Consensus 13 ~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p~~~g~~ 92 (365)
||++++.|+++++||+++.|||+||||.++|+|++||++||+||+++|+++++++++|+++|++++..++.++|.+.|+|
T Consensus 1 P~~~~~~~~~~~~hg~~~~DpY~WLed~~~~~v~~~~~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~~ 80 (414)
T PF02897_consen 1 PPTARKPPVVETLHGVTITDPYRWLEDDDSPEVLAWLKAENAYTEAYLAQLKPLREKLYEELKARINEDRESVPVRRGGY 80 (414)
T ss_dssp S-TTS-TTSEEEETTEEEE-TTGGGGSTTSHHHHHHHHHHHHHHHHHHHTSHTCHHHHHHHHHHHCSSSEE---EEETTE
T ss_pred CCCCCCCCeeeecCCCEeecCchhhcCCCCHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHhhccCCCccccEEECCe
Confidence 67777777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCC
Q 040506 93 LYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGD 172 (365)
Q Consensus 93 ~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~ 172 (365)
+||+++.++++++++||+.... .+...||+|||+|+|+++++++.++.+++||||++|||++|.+|+
T Consensus 81 ~y~~~~~~~~~~~~~~r~~~~~-------------~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~ 147 (414)
T PF02897_consen 81 YYYSRNQGGKNYPVLYRRKTDE-------------EDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGS 147 (414)
T ss_dssp EEEEEE-SS-SS-EEEEEETTS--------------TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTS
T ss_pred EEEEEEcCCCceEEEEEEeccc-------------CCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCC
Confidence 9999999999999999997531 012347999999999988568899999999999999999999999
Q ss_pred eEEEEEEEECCCCcccC--------------------------------------eEEEEECCCCCCCCccEEeeCCCCe
Q 040506 173 EQFMLQIKDLRNQCIVP--------------------------------------RVLCTKLGSDSTDDAPIFTEGDSGF 214 (365)
Q Consensus 173 e~~~l~v~Dl~tg~~l~--------------------------------------~v~~h~lGt~~~~d~lvf~e~d~~~ 214 (365)
|+++|+|+|++||++++ +||+|++|+++++|++||+++++.+
T Consensus 148 e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~ 227 (414)
T PF02897_consen 148 EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF 227 (414)
T ss_dssp SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT
T ss_pred ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc
Confidence 99999999999998775 4899999999999999999999998
Q ss_pred -EEEEEEcCCCcEEEEEeCCCcc-eEEEEEeCCC--------ce----------eecC-c-------cccCCcEEEEEEe
Q 040506 215 -CVDITSTKDGKFITVNSNSRAS-SEEGLCDRCD--------QS----------ISEN-E-------ECSSGDYYLARCR 266 (365)
Q Consensus 215 -~~~~~~s~d~~~l~i~~~~~~t-sev~~~d~~~--------~~----------~~~~-~-------~~~~~~~~l~~~~ 266 (365)
++++..|+|++||+|+++++.+ +++|+++... +. ++.+ + +.++++++|++++
T Consensus 228 ~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 228 WFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp SEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEE
T ss_pred EEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEec
Confidence 9999999999999999999998 9999999531 22 2221 1 3467889999999
Q ss_pred cCcCCCCCce-EEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCC-ccccccccchhcCCCccccCCCCCeeeee
Q 040506 267 AEKLYSANWQ-NIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLS-INFECKYQMEIENLNPWFFPLPSSSCSIV 344 (365)
Q Consensus 267 ~~~~~~~~w~-~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~-~~~~~~~~~~~~~~~~~~i~~p~~~~~~~ 344 (365)
+.++...+|+ +|+++.++..|+++.+++++||+.+++||.++|+++++. +.. ...+++|+.+.+..
T Consensus 308 l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~------------~~~~~~p~~g~v~~ 375 (414)
T PF02897_consen 308 LADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE------------SREIPLPEAGSVSG 375 (414)
T ss_dssp TTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE------------EEEEESSSSSEEEE
T ss_pred ccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE------------EeeecCCcceEEec
Confidence 9887766777 677777788999999999999999999999999999998 432 35788888764333
Q ss_pred cCCCCCCCCCEEEEEEeccCC
Q 040506 345 PGSNHDFMSSVYRAVLSSPVV 365 (365)
Q Consensus 345 ~~~~~~~~s~~~~~~~sS~~~ 365 (365)
.+.+++++.++|+|+||++
T Consensus 376 --~~~~~~~~~~~~~~ss~~~ 394 (414)
T PF02897_consen 376 --VSGDFDSDELRFSYSSFTT 394 (414)
T ss_dssp --EES-TT-SEEEEEEEETTE
T ss_pred --cCCCCCCCEEEEEEeCCCC
Confidence 3457899999999999974
No 3
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=1.9e-53 Score=438.17 Aligned_cols=326 Identities=23% Similarity=0.370 Sum_probs=280.6
Q ss_pred CCCCCCCCeEEccCCCeeecccccccCC--CChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCCeeeC
Q 040506 13 PPVPKKIPYEASAHGLTWQDPYHWMKNT--NDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWG 90 (365)
Q Consensus 13 ~P~a~~~~~~~~~hG~~~~DpY~WLed~--~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p~~~g 90 (365)
||.|+++|++.++||+++.|||+||||. ++|+|++||++||+||+++|+++++++++|+++|+++++.++.++|.++|
T Consensus 2 pP~a~~~~~~~~~hg~~~~DpY~WLed~~r~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g 81 (686)
T PRK10115 2 LPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKN 81 (686)
T ss_pred cCCCCCCCeeEEeCCCEeccCchHhhCCCCCCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcccccCCCCEEEC
Confidence 7889999999999999999999999996 59999999999999999999998899999999999999999999999999
Q ss_pred CeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCC
Q 040506 91 PWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTS 170 (365)
Q Consensus 91 ~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~ 170 (365)
+|+||+|+.++++++++||++... .+.+.||+|||+|+++++++++.++.+.+||||++|||++|.+
T Consensus 82 ~~~y~~~~~~g~~~~~~~r~~~~~-------------~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~ 148 (686)
T PRK10115 82 GYRYRHIYEPGCEYAIYQRQSAFS-------------EEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFL 148 (686)
T ss_pred CEEEEEEEcCCCccEEEEEecCCC-------------CCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCC
Confidence 999999999999999999986431 1124589999999998877899999999999999999999999
Q ss_pred CCeEEEEEEEECCCCcccC--------------------------------eEEEEECCCCCCCCccEEeeCCCCeEEEE
Q 040506 171 GDEQFMLQIKDLRNQCIVP--------------------------------RVLCTKLGSDSTDDAPIFTEGDSGFCVDI 218 (365)
Q Consensus 171 G~e~~~l~v~Dl~tg~~l~--------------------------------~v~~h~lGt~~~~d~lvf~e~d~~~~~~~ 218 (365)
|+|+++|+|+|+.||+.++ +||+|++||++++|++||+++++.+++++
T Consensus 149 G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~ 228 (686)
T PRK10115 149 SRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSL 228 (686)
T ss_pred CcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEE
Confidence 9999999999999998554 79999999999999999999998888888
Q ss_pred EEcCCCcEEEEEeCCCcceEEEEEeCC---C------------ceeecCc--------cccCCcEEEEEEecCcCCCCCc
Q 040506 219 TSTKDGKFITVNSNSRASSEEGLCDRC---D------------QSISENE--------ECSSGDYYLARCRAEKLYSANW 275 (365)
Q Consensus 219 ~~s~d~~~l~i~~~~~~tsev~~~d~~---~------------~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~w 275 (365)
..++|++|++|.++++.++++++++.+ . .|.+.+. +++++++.|+.+++.+ ..+|
T Consensus 229 ~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~--~~~~ 306 (686)
T PRK10115 229 HKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRD--EQQW 306 (686)
T ss_pred EEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCC--cccC
Confidence 899999999999999988999998832 1 1212211 3457888888888764 3689
Q ss_pred eEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccccccccchhcCCCccccCCCCCeeeeecCCCCCCCCCE
Q 040506 276 QNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSV 355 (365)
Q Consensus 276 ~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~s~~ 355 (365)
++|++++++..|+++.+++++|++.++++|.++|++++++++. ...+++++..+...++.+.+++++.
T Consensus 307 ~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~------------~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (686)
T PRK10115 307 EELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTRE------------VIGIAFDDPAYVTWIAYNPEPETSR 374 (686)
T ss_pred eEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCc------------eEEecCCCCceEeeecccCCCCCce
Confidence 9999997778899999999999999999999999999876432 1345555444444455666788999
Q ss_pred EEEEEeccCC
Q 040506 356 YRAVLSSPVV 365 (365)
Q Consensus 356 ~~~~~sS~~~ 365 (365)
++|+++||++
T Consensus 375 ~~~~~ss~~~ 384 (686)
T PRK10115 375 LRYGYSSMTT 384 (686)
T ss_pred EEEEEecCCC
Confidence 9999999975
No 4
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-49 Score=385.37 Aligned_cols=335 Identities=35% Similarity=0.556 Sum_probs=276.4
Q ss_pred CCCCCCCCC-CCeEEccCCCeeecccccccCCCChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCCee
Q 040506 10 SPPPPVPKK-IPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPER 88 (365)
Q Consensus 10 ~~~~P~a~~-~~~~~~~hG~~~~DpY~WLed~~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p~~ 88 (365)
+..||+++| +++.+.+||+++.|||+||||.++.++++||++||.||+++|+.++..+ +|+.||+.+++++.+++|.+
T Consensus 3 ~~~~P~~~k~e~~~~~~hg~~v~Dpy~Wl~d~d~~~~~~fv~~en~~t~~vl~~~e~~~-kl~~em~~~i~ye~~~~p~r 81 (712)
T KOG2237|consen 3 PLQYPVARKDESVAEDFHGVTVEDPYRWLEDPDDTEMKEFVEAENKYTDAVLEDTETKE-KLFSEMTKRIDYEIITPPLR 81 (712)
T ss_pred CCCCCCcccccchhhhcCCceecCcchhhcCCcHHHHHHHHHHhhhhhHHHHhccHHHH-HHHHHhhhccCccccCCccc
Confidence 345677766 4788999999999999999999999999999999999999999996665 99999999999999999999
Q ss_pred eCCeEEEEEccCCCccceEEEecCccc-CCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEE
Q 040506 89 WGPWLYYQYIPEGKEYPLLCRRLETEK-SGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTI 167 (365)
Q Consensus 89 ~g~~~Y~~~~~~~~~~~i~~R~~~~~~-~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~ 167 (365)
+|+|+||+++.++++|+++||+....+ ..|.+.. ..+ ...+|+||.|++|++++|+..|....|||++++||..
T Consensus 82 ~G~~yyY~~n~~lkq~vl~~rr~~~~e~~~~ld~~----~~~-dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~ 156 (712)
T KOG2237|consen 82 WGPWYYYFYNTGLKQYVLYCRRLLEKEEEVFLDPN----ALG-DDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTK 156 (712)
T ss_pred cCCEEEEEEcCCceehhHHHHhhhhcccceecCCc----cCC-CCceEEechhhhhhcCCceEEeecccCCCceEEEEEE
Confidence 999999999999999999999976221 1222211 112 3457999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEECCCCcccC--------------------------------eEEEEECCCCCCCCccEEeeCCCCeE
Q 040506 168 DTSGDEQFMLQIKDLRNQCIVP--------------------------------RVLCTKLGSDSTDDAPIFTEGDSGFC 215 (365)
Q Consensus 168 d~~G~e~~~l~v~Dl~tg~~l~--------------------------------~v~~h~lGt~~~~d~lvf~e~d~~~~ 215 (365)
+..|+|.+++ |.++.+.+.+. +||+|.+||+|++|+++|+|+|++++
T Consensus 157 ~~~~~e~~~~-v~~~~~~~~~~~~~~~g~~y~~w~~~dg~~l~~~t~~~~~r~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~ 235 (712)
T KOG2237|consen 157 DTEGKELFTV-VIDVKFSGPVWTHDGKGVSYLAWAKQDGEDLLYGTEDENNRPHKVYYHTLGTDQSEDVLLYEEKDEPKH 235 (712)
T ss_pred cCCCCcccee-eeeeccCCceeeccCCceEeeeecccCCceeeeeeeccccCcceEEEEecccCCCcceEEEecCCCCeE
Confidence 9999999999 99998876553 89999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEeCCCcc---eEEEEEeCCC-----c-----------eeecCc--------------cccCCcEEE
Q 040506 216 VDITSTKDGKFITVNSNSRAS---SEEGLCDRCD-----Q-----------SISENE--------------ECSSGDYYL 262 (365)
Q Consensus 216 ~~~~~s~d~~~l~i~~~~~~t---sev~~~d~~~-----~-----------~~~~~~--------------~~~~~~~~l 262 (365)
+.+..++|.++..|++.+.+. +.||++|... . ++++|. +++++++++
T Consensus 236 vf~~~~kD~~~~~i~si~~t~s~~~~vf~~d~~~~~~gl~~~~~~~v~~v~~f~eh~~fi~~~~t~~~~~tn~~~p~y~l 315 (712)
T KOG2237|consen 236 VFISETKDSGFYTINSISETCSPVNKVFLCDLSSPSDGLELLILPRVKGVDCFVEHYDFITNEGTEFYFLTNKDAPNYYL 315 (712)
T ss_pred EEEEEEecCceEEEEEeeccCCccceEEEEecccccCCcchheeeccchhhhhhhhhhheeccCcceeeeccCCCCceeE
Confidence 999999998888888877664 5999999432 1 122211 357899999
Q ss_pred EEEecCcCCCCCceEEeCCCCCceEeEEEEeCCEEEE-EEecCCeeeEEEEeCCccccccccchhcCCCccccCCCCCee
Q 040506 263 ARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVL-FVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSC 341 (365)
Q Consensus 263 ~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~~~~lvl-~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~ 341 (365)
+++++..|....|++||++.+..+|++++++++++++ .+..+...-+++.++-.+. ..+.+++|-.++
T Consensus 316 ~r~~~~~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~l~g~-----------~~~~fpLpv~sv 384 (712)
T KOG2237|consen 316 LRIDVKEPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLKHILQVRDLLDGS-----------LLRSFPLPVGSV 384 (712)
T ss_pred EeeeccCccccccceeecccchhhhhhhhhhcCceEEEEEecCchhhccccccccCc-----------eeeeecCCCCcc
Confidence 9999988777899999999988999999999876555 5555555555555543332 357899998765
Q ss_pred eeecCCCCCCCCCEEEEEEeccCC
Q 040506 342 SIVPGSNHDFMSSVYRAVLSSPVV 365 (365)
Q Consensus 342 ~~~~~~~~~~~s~~~~~~~sS~~~ 365 (365)
+..++ ++++.++||.++||++
T Consensus 385 ~~~~g---~~~~~~~~f~~sS~l~ 405 (712)
T KOG2237|consen 385 SGTSG---DFKSSTIRFQFSSFLT 405 (712)
T ss_pred ccccc---CCCCceEEEEEeccCC
Confidence 55543 7999999999999986
No 5
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-35 Score=282.14 Aligned_cols=308 Identities=18% Similarity=0.178 Sum_probs=239.6
Q ss_pred eecccccccCCCChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCCeeeCCeEEEEEccCCCccceEEE
Q 040506 30 WQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCR 109 (365)
Q Consensus 30 ~~DpY~WLed~~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p~~~g~~~Y~~~~~~~~~~~i~~R 109 (365)
..|||+||||.+++++++|+++||+.|..+|... +.++.+.+++.+++..++.++|.++|+++|+++++..+++++|.|
T Consensus 2 ~~DPy~wlEd~~~~eal~wv~~~N~~t~~~L~~~-~~~a~~~~~~~~l~d~~~~~~~~~~~~~~ynFw~D~~~p~Glwr~ 80 (648)
T COG1505 2 VPDPYRWLEDLDSAEALKWVEAQNAKTREFLGED-SARAASDKRLLELWDYEDIPIPFERGGRYYNFWQDALYPRGLYRR 80 (648)
T ss_pred CCCcchhhhcCCcHHHHHHHHhhhhHHHHHhhcc-hhhHHHHHHHHHHhhccccCcceeccceeEEeeccccCcceeEEe
Confidence 4799999999999999999999999999999998 778889999999998888999999999999999999999998877
Q ss_pred ecCcccCCccceeeccccCCCCceEEEeccchhccCCC-eEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 110 RLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYG-YVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~-~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+... .|+...+.|+||||+|+|++..| .+.+++.+++||+++|+|++|.+|+|+.++|++|++||+++
T Consensus 81 ttl~-----------syrs~~p~WevLiD~d~Ls~~~g~~v~~~Gas~~~~~~R~l~s~S~gG~D~~~~re~Dlet~~fv 149 (648)
T COG1505 81 TTLE-----------TYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETGEFV 149 (648)
T ss_pred ecce-----------eecccCCCceeecCHHHHhhhcCCcEEEccceeCCCCCEEEEEecCCCCcceEEEEEEecccccc
Confidence 6543 34566789999999999996532 44555566779999999999999999999999999999776
Q ss_pred C--------------------------------------eEEEEECCCCCCCCccEEeeCCC-CeEEEEEEcCCCcEEEE
Q 040506 189 P--------------------------------------RVLCTKLGSDSTDDAPIFTEGDS-GFCVDITSTKDGKFITV 229 (365)
Q Consensus 189 ~--------------------------------------~v~~h~lGt~~~~d~lvf~e~d~-~~~~~~~~s~d~~~l~i 229 (365)
+ +++|+++++.+++|++|+...+- +++..+..+.++.++++
T Consensus 150 ~~~~f~~~~~~wld~d~~~~~~~~~~~e~T~sGy~~~~~~~krg~~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~~f~~ 229 (648)
T COG1505 150 EEEGFKFPGISWLDDDGVFVSRYWRPKEKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFML 229 (648)
T ss_pred cCCCccccceEEecCCCEEEecccCCcccCccCCchHhhhhhhcccccCCCCceEEecccccCCccceEEEeeccchhhh
Confidence 5 57788899999999999987543 23455677888888887
Q ss_pred EeCCCcc--eEEEEEeCCC------ceeec-Cccc-----cCCcEEEEEEecCcCCCCCceEEeCCCCCceEeEEEEeCC
Q 040506 230 NSNSRAS--SEEGLCDRCD------QSISE-NEEC-----SSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDG 295 (365)
Q Consensus 230 ~~~~~~t--sev~~~d~~~------~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~~~ 295 (365)
..+-+.+ .++++-...+ ..++. ..+| +.+.+++++......+ .... ++.|++..+|+.+..+++
T Consensus 230 ~~~~~~~~~~~~~l~~p~~~~~~~~~l~~~~r~dw~~~~~~~g~l~l~~~e~~~~g-~~~a-~~~P~~~~~le~v~tt~~ 307 (648)
T COG1505 230 SLWLGTSGKGLIKLGLPDKVGYEWGKLVNTLRADWTFADVDYGLLYLLTDEDLELG-KVIA-EFIPEEEQSLEQVVTTKD 307 (648)
T ss_pred eeeEeccCCCceeccCCccccceeeeeeEeecccccccCcccceEEEEehhccccC-ceeE-EecCCcccceeeeEEEcC
Confidence 7766654 3555433222 11221 1112 1233444433221122 2223 666777789999999999
Q ss_pred EEEEEEecCCeeeEEEEeCCccccccccchhcCCCccccCCCCCeeeeecCCCCCCCCCEEEEEEeccCC
Q 040506 296 HLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV 365 (365)
Q Consensus 296 ~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~s~~~~~~~sS~~~ 365 (365)
+||+..++|+++++.++.+.+. ....+++|..+ ++.+.+ .+.+.+.+++.++||+|
T Consensus 308 ~~va~~l~nv~~~l~v~~~~g~------------~~~~v~l~~~g-a~~~~~-~~~~g~ev~l~~t~F~t 363 (648)
T COG1505 308 KLVAGTLDNVSGRLEVYDLKGE------------RIEEVELPPPG-ALGMGS-ADKDGDEVFLAFTSFTT 363 (648)
T ss_pred eEEeeeehhccceEEEeccCce------------EeeecccCCcc-ceeecc-CCCCCcEEEEEeecccC
Confidence 9999999999999999998652 23568888776 677664 58999999999999986
No 6
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.95 E-value=9e-08 Score=93.99 Aligned_cols=232 Identities=13% Similarity=0.093 Sum_probs=138.9
Q ss_pred HHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCCeeeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCC
Q 040506 51 HENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGF 130 (365)
Q Consensus 51 ~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p~~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~ 130 (365)
+|+.++++++... +..+++..++.+.+.....+.|...+..++|.+..+++....++..... +
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---------------g- 179 (417)
T TIGR02800 117 QLQLLGKQYTVTA-SQLRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYD---------------G- 179 (417)
T ss_pred eEEeeeeeEEcCH-HHHHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCC---------------C-
Confidence 3667777777765 6667777777766655555666667777777666554445556655322 1
Q ss_pred CceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC---------------------
Q 040506 131 GKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP--------------------- 189 (365)
Q Consensus 131 ~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~--------------------- 189 (365)
...+.|++.+.. +....+||||++|||+...+|. ..|+++|+.+|+...
T Consensus 180 ~~~~~l~~~~~~--------~~~p~~Spdg~~la~~~~~~~~--~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 180 ANPQTITRSREP--------ILSPAWSPDGQKLAYVSFESGK--PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred CCCEEeecCCCc--------eecccCCCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 334667775421 2234699999999999876554 679999999885321
Q ss_pred ---------eEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC---ceeec------
Q 040506 190 ---------RVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD---QSISE------ 251 (365)
Q Consensus 190 ---------~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~---~~~~~------ 251 (365)
+||.|.+++..... +.... ........++||++|++.+.......+|+++... +.+..
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~~~--l~~~~--~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~ 325 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQLTR--LTNGP--GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNA 325 (417)
T ss_pred EEECCCCCccEEEEECCCCCEEE--CCCCC--CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence 46777776653221 11111 1112245588999998887765566899988543 11111
Q ss_pred ------Ccc------ccCCcEEEEEEecCcCCCCCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCcc
Q 040506 252 ------NEE------CSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 252 ------~~~------~~~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
++. ..++.+.|..+++.. .+..++.......--.+...+++|++...+++...|.++++.+.
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~----~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDG----GGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCC----CCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 110 012334445555432 23344443322111145556778999999999999999987653
No 7
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.01 E-value=0.0017 Score=64.60 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=88.7
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC------------------------------eEEEEECCCCCCC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP------------------------------RVLCTKLGSDSTD 202 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~------------------------------~v~~h~lGt~~~~ 202 (365)
...+||||++|||+.+.+| ...|+++|+.+|+... +||.+.+.+...
T Consensus 222 ~p~wSPDG~~La~~s~~~g--~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~- 298 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENR--KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL- 298 (448)
T ss_pred CceECCCCCEEEEEEecCC--CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-
Confidence 4568899999988876544 4678888888775321 356565544321
Q ss_pred CccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC---ceee-c-----------Ccc------ccCCcEE
Q 040506 203 DAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD---QSIS-E-----------NEE------CSSGDYY 261 (365)
Q Consensus 203 d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~---~~~~-~-----------~~~------~~~~~~~ 261 (365)
+.+.... ........++||++|++.+.......+|+++.+. +.+. . ++. ..++.+.
T Consensus 299 -~~lt~~~--~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 299 -TRITRHR--AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred -EECccCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceE
Confidence 1122111 1223355699999998887766667899988542 1111 1 110 0122233
Q ss_pred EEEEecCcCCCCCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCcc
Q 040506 262 LARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 262 l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
|..+++.. ...+.|.....+... .+...+..|++....++..+|+++++++.
T Consensus 376 I~~~dl~~---g~~~~lt~~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 376 IARQDLET---GAMQVLTSTRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEEECCC---CCeEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 44444432 223333222111111 45566778998888999999999998653
No 8
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.006 Score=60.29 Aligned_cols=141 Identities=13% Similarity=0.182 Sum_probs=84.4
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
...+||||++|||+.+.+|. ..|+++|+++|+. .++-... ........++||+.|++.+.
T Consensus 247 ~~~~SpDG~~la~~~~~~g~--~~Iy~~d~~~~~~------~~lt~~~------------~~~~~~~~spDg~~i~f~s~ 306 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGN--PEIYVMDLASRQL------SRVTNHP------------AIDTEPFWGKDGRTLYFTSD 306 (430)
T ss_pred CeEECCCCCEEEEEEccCCC--ceEEEEECCCCCe------EEcccCC------------CCcCCeEECCCCCEEEEEEC
Confidence 46799999999999987775 6799999999864 1221110 01112345889999888776
Q ss_pred CCcceEEEEEeCCC---ceee------------cCcc------ccCCcEEEEEEecCcCCCCCceEEeCCCCCceEeEEE
Q 040506 233 SRASSEEGLCDRCD---QSIS------------ENEE------CSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMD 291 (365)
Q Consensus 233 ~~~tsev~~~d~~~---~~~~------------~~~~------~~~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~ 291 (365)
......+|+++... +.+. +++. ..+..+.|...++.. ...+.|.....+... .+.
T Consensus 307 ~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t---g~~~~lt~~~~~~~p-~~s 382 (430)
T PRK00178 307 RGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR---GSVRILTDTSLDESP-SVA 382 (430)
T ss_pred CCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC---CCEEEccCCCCCCCc-eEC
Confidence 65556888887432 1111 0110 011234444455433 233434322122212 455
Q ss_pred EeCCEEEEEEecCCeeeEEEEeCCcc
Q 040506 292 IFDGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 292 ~~~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
..+..|+....+++..+|.+++++++
T Consensus 383 pdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 383 PNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCC
Confidence 56678888888889999999998654
No 9
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.64 E-value=0.011 Score=58.64 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=80.8
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
...+||||++|+|+.+.+|. ..|+++|+.+|+. .++.... ........++||++|+..+.
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~--~~Iy~~d~~~g~~------~~lt~~~------------~~~~~~~~spDG~~l~f~sd 311 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGN--PEIYVMDLGSRQL------TRLTNHF------------GIDTEPTWAPDGKSIYFTSD 311 (433)
T ss_pred CceECCCCCEEEEEEeCCCC--ceEEEEECCCCCe------EECccCC------------CCccceEECCCCCEEEEEEC
Confidence 46799999999999988775 5799999998864 1121100 01112456899999888776
Q ss_pred CCcceEEEEEeCCC---ceeecCc------cc--cC----------CcEEEEEEecCcCCCCCceEEeCCCCCceEeEEE
Q 040506 233 SRASSEEGLCDRCD---QSISENE------EC--SS----------GDYYLARCRAEKLYSANWQNIILPGEDISLQDMD 291 (365)
Q Consensus 233 ~~~tsev~~~d~~~---~~~~~~~------~~--~~----------~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~ 291 (365)
......+|+++... +.+..++ .| +| ..+.|...++.. ...+.|.....+... .+.
T Consensus 312 ~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~---g~~~~Lt~~~~~~~p-~~s 387 (433)
T PRK04922 312 RGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST---GSVRTLTPGSLDESP-SFA 387 (433)
T ss_pred CCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC---CCeEECCCCCCCCCc-eEC
Confidence 55556788887432 1111100 01 12 223333334322 233433222111111 344
Q ss_pred EeCCEEEEEEecCCeeeEEEEeCCcc
Q 040506 292 IFDGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 292 ~~~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
..+..|+.....++.++|.++++++.
T Consensus 388 pdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 388 PNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCC
Confidence 44667777777778899999998654
No 10
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.62 E-value=0.018 Score=56.87 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=85.8
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCC
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNS 233 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~ 233 (365)
..+||||+++||+.+.+| ...|+++|+++|+. .+|-... ........++||+.|+..++.
T Consensus 238 ~~~SPDG~~la~~~~~~g--~~~Iy~~dl~~g~~------~~LT~~~------------~~d~~p~~SPDG~~I~F~Sdr 297 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKG--QPDIYLYDTNTKTL------TQITNYP------------GIDVNGNFVEDDKRIVFVSDR 297 (419)
T ss_pred eEECCCCCEEEEEEccCC--CcEEEEEECCCCcE------EEcccCC------------CccCccEECCCCCEEEEEECC
Confidence 458999999999999876 46799999988863 1221111 011223569999999888887
Q ss_pred CcceEEEEEeCCC---ceeec----------Ccc-------cc-----CCcEEEEEEecCcCCCCCceEEeCCCCCceEe
Q 040506 234 RASSEEGLCDRCD---QSISE----------NEE-------CS-----SGDYYLARCRAEKLYSANWQNIILPGEDISLQ 288 (365)
Q Consensus 234 ~~tsev~~~d~~~---~~~~~----------~~~-------~~-----~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~ 288 (365)
.....||+++.+. +-+.. ++. .. ...+.|+.+++.. ..++.|.....+. --
T Consensus 298 ~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~---g~~~~LT~~~~~~-~p 373 (419)
T PRK04043 298 LGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS---DYIRRLTANGVNQ-FP 373 (419)
T ss_pred CCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC---CCeEECCCCCCcC-Ce
Confidence 6678999998543 11110 110 00 0113444444432 2345554332221 12
Q ss_pred EEEEeCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 289 DMDIFDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 289 ~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
.+...+..|+......+...|.++++++..
T Consensus 374 ~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 374 RFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 345556778888778888899999998643
No 11
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.58 E-value=0.03 Score=55.48 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=54.7
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC------------------------------eEEEEECCCCCCC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP------------------------------RVLCTKLGSDSTD 202 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~------------------------------~v~~h~lGt~~~~ 202 (365)
..++||||++|||.-..+|. ..|+++|+.+|+... +||...+.+...
T Consensus 206 ~p~wSpDG~~lay~s~~~g~--~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~- 282 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGR--PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT- 282 (435)
T ss_pred eeEECCCCCEEEEEEecCCC--CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-
Confidence 45789999999998765554 678999998876421 244444433211
Q ss_pred CccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC
Q 040506 203 DAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD 246 (365)
Q Consensus 203 d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~ 246 (365)
..+... .........|+||++|+..+.......+|+++.++
T Consensus 283 -~~Lt~~--~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 283 -TRLTDS--PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred -EEccCC--CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 111111 11122355699999998877655567899998543
No 12
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.35 E-value=0.044 Score=54.32 Aligned_cols=147 Identities=15% Similarity=0.132 Sum_probs=78.6
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
...+||||++|||+.+..|.-...+..+|+++|.. | ..+.+..... ........|+||++|+..+.
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~---------g----~~~~lt~~~~-~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI---------G----KPRRLLNEAF-GTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC---------C----cceEeecCCC-CCcCCeEECCCCCEEEEEEC
Confidence 35799999999999987775443445567776421 1 1112222111 11112456999999887776
Q ss_pred CCcceEEEEEeCC--C---ceeecC-c-----cc--cCCcE----------EEEEEecCcCCCCCceEEeCCCCCceEeE
Q 040506 233 SRASSEEGLCDRC--D---QSISEN-E-----EC--SSGDY----------YLARCRAEKLYSANWQNIILPGEDISLQD 289 (365)
Q Consensus 233 ~~~tsev~~~d~~--~---~~~~~~-~-----~~--~~~~~----------~l~~~~~~~~~~~~w~~vi~~~~~~~l~~ 289 (365)
......+|+++.+ + +.+... + .| +|..+ .|...++.. ...+.+... . .....
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~---g~~~~Lt~~-~-~~~~~ 375 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT---GRDYQLTTS-P-ENKES 375 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC---CCeEEccCC-C-CCccc
Confidence 5445678887642 1 111110 0 11 22222 222233322 233434322 1 22344
Q ss_pred EEEe--CCEEEEEEecCCeeeEEEEeCCccc
Q 040506 290 MDIF--DGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 290 v~~~--~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
..+. ++.|++....++...|++++++++.
T Consensus 376 p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 376 PSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 4443 4567777777788899999997653
No 13
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.30 E-value=0.027 Score=55.65 Aligned_cols=144 Identities=13% Similarity=0.102 Sum_probs=81.8
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
...++||||++|||....+| ...|+++|+.+|+. .++.. .+. .......|+||++|++..
T Consensus 202 ~~p~wSpDG~~la~~s~~~~--~~~l~~~~l~~g~~------~~l~~----------~~g--~~~~~~~SpDG~~la~~~ 261 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQK--RPRIFVQNLDTGRR------EQITN----------FEG--LNGAPAWSPDGSKLAFVL 261 (430)
T ss_pred eeeeECCCCCEEEEEEcCCC--CCEEEEEECCCCCE------EEccC----------CCC--CcCCeEECCCCCEEEEEE
Confidence 34579999999999876544 45799999998864 11111 111 111245699999998776
Q ss_pred CCCcceEEEEEeCCC---ceeecCc------cc--cCCcEE----------EEEEecCcCCCCCceEEeCCCCCceEeEE
Q 040506 232 NSRASSEEGLCDRCD---QSISENE------EC--SSGDYY----------LARCRAEKLYSANWQNIILPGEDISLQDM 290 (365)
Q Consensus 232 ~~~~tsev~~~d~~~---~~~~~~~------~~--~~~~~~----------l~~~~~~~~~~~~w~~vi~~~~~~~l~~v 290 (365)
+.....++|++|.+. +.+..+. .| ++..++ |+..++.. .+++.+........--.+
T Consensus 262 ~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~---g~~~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 262 SKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG---GRAERVTFVGNYNARPRL 338 (430)
T ss_pred ccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC---CCEEEeecCCCCccceEE
Confidence 655567999998543 1111100 11 222222 22223221 234444322211112234
Q ss_pred EEeCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 291 DIFDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 291 ~~~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
...+++|++..+.++...|.++++.++.
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 4567788888777777789999987643
No 14
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.29 E-value=0.12 Score=51.22 Aligned_cols=97 Identities=10% Similarity=-0.053 Sum_probs=51.4
Q ss_pred EEEEcCCCcEEEEEeCCCcceEEEEEeCCC---ceeecCc------cc--cCCc----------EEEEEEecCcCCCCCc
Q 040506 217 DITSTKDGKFITVNSNSRASSEEGLCDRCD---QSISENE------EC--SSGD----------YYLARCRAEKLYSANW 275 (365)
Q Consensus 217 ~~~~s~d~~~l~i~~~~~~tsev~~~d~~~---~~~~~~~------~~--~~~~----------~~l~~~~~~~~~~~~w 275 (365)
....++||++|+..+.......+|.++.+. +.+...+ .| +|.. +.|...++.. ..+
T Consensus 291 ~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~---g~~ 367 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGV 367 (429)
T ss_pred ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC---CCe
Confidence 456799999998877665557899888543 1111100 01 1221 2222233322 234
Q ss_pred eEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCcc
Q 040506 276 QNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 276 ~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
+.|.....+... .+...+..|+....+++...|.++++++.
T Consensus 368 ~~Lt~~~~~~~p-~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 368 QVLTDTFLDETP-SIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEeCCCCCCCCc-eECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 444322111111 23344556777777777788999998754
No 15
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.28 E-value=0.04 Score=54.44 Aligned_cols=141 Identities=12% Similarity=0.118 Sum_probs=82.2
Q ss_pred eEEeCCCCCE-EEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 153 TCRVSPDHNF-LAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 153 ~~~~Spdg~~-la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
.-++||||++ ++|+...+|. ..|+++|+.||+. +.|...+ ........|+||+.|++..
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~--~~Iyv~dl~tg~~----------------~~lt~~~--g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERK--PTLYKYNLYTGKK----------------EKIASSQ--GMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred eEEECCCCCcEEEEEEccCCC--CEEEEEECCCCcE----------------EEEecCC--CcEEeeEECCCCCEEEEEE
Confidence 3579999996 6665443332 3899999999864 2333221 1222245699999998887
Q ss_pred CCCcceEEEEEeCCC---ceeec-Cc-----cc--cCCcEE----------EEEEecCcCCCCCceEEeCCCCCceEeEE
Q 040506 232 NSRASSEEGLCDRCD---QSISE-NE-----EC--SSGDYY----------LARCRAEKLYSANWQNIILPGEDISLQDM 290 (365)
Q Consensus 232 ~~~~tsev~~~d~~~---~~~~~-~~-----~~--~~~~~~----------l~~~~~~~~~~~~w~~vi~~~~~~~l~~v 290 (365)
......++|+++... +.+.. .+ .| +|..++ |+.+++.. ...+.+..... ....+
T Consensus 252 ~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~---g~~~rlt~~g~--~~~~~ 326 (419)
T PRK04043 252 APKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS---GSVEQVVFHGK--NNSSV 326 (419)
T ss_pred ccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC---CCeEeCccCCC--cCceE
Confidence 766668999998543 11111 00 11 233333 33344432 23333432221 12366
Q ss_pred EEeCCEEEEEEecC------CeeeEEEEeCCccc
Q 040506 291 DIFDGHLVLFVSKK------GVPMLCSIDLSINF 318 (365)
Q Consensus 291 ~~~~~~lvl~~~~~------g~~~l~v~~l~~~~ 318 (365)
+..+++|+...+.+ +..+|.++++.++.
T Consensus 327 SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 327 STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 77788888877665 44689999987653
No 16
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.23 E-value=0.1 Score=51.69 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=81.4
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
...+||||++||++.+.+|. ..|+++|+.++.. .++.... ........|+||++|+..++
T Consensus 244 ~~~~SPDG~~la~~~~~~g~--~~Iy~~d~~~~~~------~~lt~~~------------~~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGN--SQIYTVNADGSGL------RRLTQSS------------GIDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred ceEECCCCCEEEEEEccCCC--ceEEEEECCCCCc------EECCCCC------------CCCcCeEEcCCCCEEEEEec
Confidence 46799999999999987774 6788889887753 2221111 01112346899999888766
Q ss_pred CCcceEEEEEeCCC---ceee-c-----------Cccc------cCCcEEEEEEecCcCCCCCceEEeCCCCCceEeEEE
Q 040506 233 SRASSEEGLCDRCD---QSIS-E-----------NEEC------SSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMD 291 (365)
Q Consensus 233 ~~~tsev~~~d~~~---~~~~-~-----------~~~~------~~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~ 291 (365)
......+|.++.+. +.+. . ++.+ .+..+.|...++.. ...+.+.....+.. -.+.
T Consensus 304 ~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~---g~~~~lt~~~~~~~-p~~s 379 (427)
T PRK02889 304 RGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT---GQVTALTDTTRDES-PSFA 379 (427)
T ss_pred CCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC---CCeEEccCCCCccC-ceEC
Confidence 55567888887432 1111 1 1100 11223344444432 22343432211111 1334
Q ss_pred EeCCEEEEEEecCCeeeEEEEeCCcc
Q 040506 292 IFDGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 292 ~~~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
..+..|+.....+|...|.++++++.
T Consensus 380 pdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 380 PNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred CCCCEEEEEEecCCCEEEEEEECCCC
Confidence 45668888888888999999998643
No 17
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.20 E-value=0.027 Score=55.73 Aligned_cols=144 Identities=17% Similarity=0.097 Sum_probs=81.1
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
...++||||++|||+...+| ...|+++|+.+|+.. + +-..+ ........|+||+.|++..
T Consensus 199 ~~p~wSPDG~~la~~s~~~~--~~~I~~~dl~~g~~~------~----------l~~~~--g~~~~~~~SPDG~~la~~~ 258 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESK--KPVVYVHDLATGRRR------V----------VANFK--GSNSAPAWSPDGRTLAVAL 258 (427)
T ss_pred ccceEcCCCCEEEEEEccCC--CcEEEEEECCCCCEE------E----------eecCC--CCccceEECCCCCEEEEEE
Confidence 35689999999999876544 456999999988641 1 11111 1122356799999988776
Q ss_pred CCCcceEEEEEeCCC---ceeecCc------cc--cCCcEE----------EEEEecCcCCCCCceEEeCCCCCceEeEE
Q 040506 232 NSRASSEEGLCDRCD---QSISENE------EC--SSGDYY----------LARCRAEKLYSANWQNIILPGEDISLQDM 290 (365)
Q Consensus 232 ~~~~tsev~~~d~~~---~~~~~~~------~~--~~~~~~----------l~~~~~~~~~~~~w~~vi~~~~~~~l~~v 290 (365)
+.....++|.++... +.+..+. .| +|..+. |+.+++.. ...+.+..+.....--.+
T Consensus 259 ~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---g~~~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 259 SRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---GAAQRVTFTGSYNTSPRI 335 (427)
T ss_pred ccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC---CceEEEecCCCCcCceEE
Confidence 655568899988542 1111100 11 222222 22223221 223333322211111234
Q ss_pred EEeCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 291 DIFDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 291 ~~~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
...+++|+.....++...|.++++.++.
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 4456788877777777789999987643
No 18
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.07 E-value=0.11 Score=51.46 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=80.1
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
....+||||++|||....+| ...|+++|+.+|+.. .+ ...+ ........|+||+.|++..
T Consensus 207 ~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~g~~~------~l----------~~~~--g~~~~~~~SpDG~~l~~~~ 266 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERG--RSAIYVQDLATGQRE------LV----------ASFR--GINGAPSFSPDGRRLALTL 266 (433)
T ss_pred ccccCCCCCCEEEEEecCCC--CcEEEEEECCCCCEE------Ee----------ccCC--CCccCceECCCCCEEEEEE
Confidence 34579999999999876555 457899999888631 11 1111 1112346799999987766
Q ss_pred CCCcceEEEEEeCCC---ceeecCc------cc--cCCcE----------EEEEEecCcCCCCCceEEeCCCCCceEeEE
Q 040506 232 NSRASSEEGLCDRCD---QSISENE------EC--SSGDY----------YLARCRAEKLYSANWQNIILPGEDISLQDM 290 (365)
Q Consensus 232 ~~~~tsev~~~d~~~---~~~~~~~------~~--~~~~~----------~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v 290 (365)
+.....++|+++... +.+..+. .| ++..+ .|+.+++.. ...+.+........--.+
T Consensus 267 s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~---g~~~~lt~~g~~~~~~~~ 343 (433)
T PRK04922 267 SRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG---GSAERLTFQGNYNARASV 343 (433)
T ss_pred eCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC---CCeEEeecCCCCccCEEE
Confidence 554457899998543 1111100 11 11111 222233322 234444322211111234
Q ss_pred EEeCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 291 DIFDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 291 ~~~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
...+++|++....++..+|.++++.++.
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 4457788877667777789999986543
No 19
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.91 E-value=0.03 Score=55.85 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=55.7
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC------------------------------eEEEEECCCCCCC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP------------------------------RVLCTKLGSDSTD 202 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~------------------------------~v~~h~lGt~~~~ 202 (365)
...+||||++|||+.+.+|. ..|+++|+++|+... ++|+..+.+...
T Consensus 266 ~~~wSPDG~~La~~~~~~g~--~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~- 342 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQ--PEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV- 342 (448)
T ss_pred CeeECCCCCEEEEEEeCCCC--eEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 46799999999999887774 679999998886421 456555543321
Q ss_pred CccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCC
Q 040506 203 DAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 203 d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~ 245 (365)
..+.++. .+......++||++|+..........+|+++.+
T Consensus 343 ~~Lt~~g---~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 343 SRLTFEG---EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred EEEecCC---CCCcCeeECCCCCEEEEEEecCCceEEEEEECC
Confidence 1222321 122234568999998776555444567777643
No 20
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.81 E-value=0.038 Score=54.75 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=27.9
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
...+||||+.|+|+.+.+|. ..|+++|+++|+.
T Consensus 250 ~~~~SPDG~~la~~~~~~g~--~~Iy~~d~~~~~~ 282 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGN--TDIYTMDLRSGTT 282 (435)
T ss_pred CcEECCCCCEEEEEEecCCC--ceEEEEECCCCce
Confidence 56799999999999987774 5799999998864
No 21
>PRK03629 tolB translocation protein TolB; Provisional
Probab=96.68 E-value=0.044 Score=54.26 Aligned_cols=88 Identities=25% Similarity=0.313 Sum_probs=54.6
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC------------------------------eEEEEECCCCCC
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP------------------------------RVLCTKLGSDST 201 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~------------------------------~v~~h~lGt~~~ 201 (365)
+...+||||++|||+.+..|.. .|+++|+++|+... +||...+.+..
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~--~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~- 322 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSL--NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA- 322 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCc--EEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-
Confidence 3568999999999998877753 59999999875421 34444443321
Q ss_pred CCccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCC
Q 040506 202 DDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 202 ~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~ 245 (365)
-..+.... ........|+||++|+..........++++|.+
T Consensus 323 -~~~lt~~~--~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 323 -PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred -eEEeecCC--CCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 11121111 112234568999998776655445677777643
No 22
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.64 E-value=0.78 Score=45.36 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=77.7
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc--cC----------------------------eEEEEECCCCCC
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI--VP----------------------------RVLCTKLGSDST 201 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~--l~----------------------------~v~~h~lGt~~~ 201 (365)
...++||||++|||+-..+ +..+|+++|+.+|+. +. +||...+.+..
T Consensus 207 ~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~- 283 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT- 283 (429)
T ss_pred ccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-
Confidence 3457889998888875532 346688888888753 11 23333332211
Q ss_pred CCccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC--ceeecCc----cc--cCCcEE------EEEEec
Q 040506 202 DDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD--QSISENE----EC--SSGDYY------LARCRA 267 (365)
Q Consensus 202 ~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~--~~~~~~~----~~--~~~~~~------l~~~~~ 267 (365)
-..+... ......+..++||++|+..+.......+|.++... ...+.+. .| ++..+. ++..++
T Consensus 284 -~~~lt~~--~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~i~~~Dl 360 (429)
T PRK01742 284 -PSQLTSG--AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDNVVKQDL 360 (429)
T ss_pred -eEeeccC--CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCCEEEEEC
Confidence 0111111 11122356699999988877655557888887543 1111100 11 222221 122333
Q ss_pred CcCCCCCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCcc
Q 040506 268 EKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 268 ~~~~~~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
.. ..++.+........+ .+...+..|+....+++...+.++++++.
T Consensus 361 ~~---g~~~~lt~~~~~~~~-~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 361 TS---GSTEVLSSTFLDESP-SISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred CC---CCeEEecCCCCCCCc-eECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 22 234433322111111 23444556776666666666777776543
No 23
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.023 Score=57.32 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=74.0
Q ss_pred CceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeC
Q 040506 131 GKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEG 210 (365)
Q Consensus 131 ~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~ 210 (365)
.+++++||+|.+.++ +.+.+...++|.|++|+||+++..|+|+..|.....+.|..+..+..... .+.++.+-.
T Consensus 107 ~e~~~~ld~~~~~dd-~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~v~~~~-----~~~~~~~~~ 180 (712)
T KOG2237|consen 107 KEEEVFLDPNALGDD-GTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTVVIDVK-----FSGPVWTHD 180 (712)
T ss_pred cccceecCCccCCCC-ceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCccceeeeeec-----cCCceeecc
Confidence 567899999999887 78999999999999999999999999999999999999887765532222 233555543
Q ss_pred CCCeEEEEEEcCCCcEEEEEeCCCc--ceEEEEEe
Q 040506 211 DSGFCVDITSTKDGKFITVNSNSRA--SSEEGLCD 243 (365)
Q Consensus 211 d~~~~~~~~~s~d~~~l~i~~~~~~--tsev~~~d 243 (365)
...++-..+.-.||.-|+-...... --+||+.-
T Consensus 181 ~~g~~y~~w~~~dg~~l~~~t~~~~~r~hkvy~h~ 215 (712)
T KOG2237|consen 181 GKGVSYLAWAKQDGEDLLYGTEDENNRPHKVYYHT 215 (712)
T ss_pred CCceEeeeecccCCceeeeeeeccccCcceEEEEe
Confidence 3344433333356664433322221 24666654
No 24
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.18 E-value=0.097 Score=51.87 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=50.2
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
...+||||++|||....+| ...|+++|+++|+. .++-... . .......++||++|++...
T Consensus 331 ~p~wSPDG~~Laf~~~~~g--~~~I~v~dl~~g~~------~~Lt~~~----------~--~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKG--VRQICVYDLATGRD------YQLTTSP----------E--NKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred ceeECCCCCEEEEEEcCCC--CcEEEEEECCCCCe------EEccCCC----------C--CccceEECCCCCEEEEEEC
Confidence 4579999999999987666 35799999999864 1221110 0 0112456899999988776
Q ss_pred CCcceEEEEEeCC
Q 040506 233 SRASSEEGLCDRC 245 (365)
Q Consensus 233 ~~~tsev~~~d~~ 245 (365)
......+|+++.+
T Consensus 391 ~~g~~~L~~vdl~ 403 (428)
T PRK01029 391 NSNESELYLISLI 403 (428)
T ss_pred CCCCceEEEEECC
Confidence 6556788888754
No 25
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.78 E-value=0.13 Score=50.85 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=49.5
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC------------------------------eEEEEECCCCCC
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP------------------------------RVLCTKLGSDST 201 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~------------------------------~v~~h~lGt~~~ 201 (365)
+.-.+||||++|||+.+..| ...|+++|+.++.... +||+..+...+.
T Consensus 241 ~~P~fspDG~~l~f~~~rdg--~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDG--SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCccCCCCCCEEEEEECCCC--CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 35579999999999999775 6779999998876321 455555544332
Q ss_pred CCccEEeeCCCCeEEEEEEcCCCcEEEEEeCC
Q 040506 202 DDAPIFTEGDSGFCVDITSTKDGKFITVNSNS 233 (365)
Q Consensus 202 ~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~ 233 (365)
.++.+...... ....|+||++|++....
T Consensus 319 -~riT~~~~~~~---~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 319 -TRLTFSGGGNS---NPVWSPDGDKIVFESSS 346 (425)
T ss_pred -eEeeccCCCCc---CccCCCCCCEEEEEecc
Confidence 23334332211 34458888888777643
No 26
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.63 E-value=0.61 Score=45.55 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=51.7
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC------------------------------eEEEEECCCCCCC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP------------------------------RVLCTKLGSDSTD 202 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~------------------------------~v~~h~lGt~~~~ 202 (365)
..++||||+.|+|+.+.+|. ..|+++|+.++.... +||...+.+...
T Consensus 238 ~~~~spDg~~l~~~~~~~~~--~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~- 314 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGN--PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV- 314 (417)
T ss_pred ceEECCCCCEEEEEECCCCC--ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 35789999999999886654 568899998875321 233333322110
Q ss_pred CccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCC
Q 040506 203 DAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 203 d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~ 245 (365)
-.+.+. ......+..++||++|++.........+++++..
T Consensus 315 ~~l~~~---~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 315 RRLTFR---GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred EEeecC---CCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 011111 1122234568888888877665545677777643
No 27
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.56 E-value=0.5 Score=46.33 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=45.8
Q ss_pred CCeEEEEEccCCCc------cceEEEecCcccCCccceeeccccCCCCce--EEEeccchhccCCCeEEEeeEEeCCCCC
Q 040506 90 GPWLYYQYIPEGKE------YPLLCRRLETEKSGWLQTVFHNVRGGFGKE--EILLDWNEIAEKYGYVHVGTCRVSPDHN 161 (365)
Q Consensus 90 g~~~Y~~~~~~~~~------~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~--evllD~n~la~~~~~~~~~~~~~Spdg~ 161 (365)
|..+||.+.+.... ...+||.... .+.. ++|+-.. +..+..++ ...|+||+
T Consensus 181 ~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g----------------t~~~~d~lvfe~~----~~~~~~~~-~~~s~d~~ 239 (414)
T PF02897_consen 181 GKGFFYTRFDEDQRTSDSGYPRQVYRHKLG----------------TPQSEDELVFEEP----DEPFWFVS-VSRSKDGR 239 (414)
T ss_dssp SSEEEEEECSTTTSS-CCGCCEEEEEEETT----------------S-GGG-EEEEC-T----TCTTSEEE-EEE-TTSS
T ss_pred CCEEEEEEeCcccccccCCCCcEEEEEECC----------------CChHhCeeEEeec----CCCcEEEE-EEecCccc
Confidence 56788888777533 3344554432 1222 4666432 11221232 46899999
Q ss_pred EEEEEEcCCCCeEEEEEEEECCCC
Q 040506 162 FLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 162 ~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+|.+....+.+ ...+++.|+.++
T Consensus 240 ~l~i~~~~~~~-~s~v~~~d~~~~ 262 (414)
T PF02897_consen 240 YLFISSSSGTS-ESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEESSSS-EEEEEEEECCCT
T ss_pred EEEEEEEcccc-CCeEEEEecccc
Confidence 99999887777 889999999986
No 28
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.77 E-value=0.73 Score=43.64 Aligned_cols=90 Identities=16% Similarity=0.266 Sum_probs=62.6
Q ss_pred CceEEEeccchhccCCCe-----EEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCcc
Q 040506 131 GKEEILLDWNEIAEKYGY-----VHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAP 205 (365)
Q Consensus 131 ~~~evllD~n~la~~~~~-----~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~l 205 (365)
..+-+|+|...+... .+ -.+..+++|+||.+||=+-+ .| ..|||+.+.+|+ ++|--|+|+-.. -
T Consensus 152 ~GdV~l~d~~nl~~v-~~I~aH~~~lAalafs~~G~llATASe-KG---TVIRVf~v~~G~---kl~eFRRG~~~~---~ 220 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPV-NTINAHKGPLAALAFSPDGTLLATASE-KG---TVIRVFSVPEGQ---KLYEFRRGTYPV---S 220 (391)
T ss_pred CceEEEEEcccceee-eEEEecCCceeEEEECCCCCEEEEecc-Cc---eEEEEEEcCCcc---EeeeeeCCceee---E
Confidence 345677898877532 11 14667889999999997744 44 469999999998 688889997521 1
Q ss_pred EEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEe
Q 040506 206 IFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCD 243 (365)
Q Consensus 206 vf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d 243 (365)
| .++..++|+.||...++.+ .|++..
T Consensus 221 I---------ySL~Fs~ds~~L~~sS~Te---TVHiFK 246 (391)
T KOG2110|consen 221 I---------YSLSFSPDSQFLAASSNTE---TVHIFK 246 (391)
T ss_pred E---------EEEEECCCCCeEEEecCCC---eEEEEE
Confidence 2 2467899999887765554 355554
No 29
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.34 E-value=8.4 Score=38.06 Aligned_cols=125 Identities=15% Similarity=0.205 Sum_probs=73.7
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
-+-++.+|||||+++.+ ++.++|.++|++||.. + +-+......-++...++++||+.-
T Consensus 403 ~I~av~vs~dGK~~vva-----Ndr~el~vididngnv----------------~-~idkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 403 NIEAVKVSPDGKKVVVA-----NDRFELWVIDIDNGNV----------------R-LIDKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred ceEEEEEcCCCcEEEEE-----cCceEEEEEEecCCCe----------------e-EecccccceeEEEEEcCCceeEEE
Confidence 45567899999999876 5588999999999975 1 111112234456777999999876
Q ss_pred EeCCCc-ceEEEEEeCCC--ceeec--Cc-------cccCCcEEEEEEecCcCCCCCceEEeCCCCCceEeEEE---EeC
Q 040506 230 NSNSRA-SSEEGLCDRCD--QSISE--NE-------ECSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMD---IFD 294 (365)
Q Consensus 230 ~~~~~~-tsev~~~d~~~--~~~~~--~~-------~~~~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~---~~~ 294 (365)
.--++- +..+.+.|.++ .|-+. .+ +.++..+|.++.+.-+|+ .+.++-.+. +.+
T Consensus 461 afP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs-----------~Drv~fnf~f~~vsk 529 (668)
T COG4946 461 AFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPS-----------NDRVIFNFSFQRVSK 529 (668)
T ss_pred ecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCC-----------CCeeEEEEEEeeecc
Confidence 554443 46677777654 23222 11 124555566665432332 222232222 345
Q ss_pred CEEEEEEecCCee
Q 040506 295 GHLVLFVSKKGVP 307 (365)
Q Consensus 295 ~~lvl~~~~~g~~ 307 (365)
-+||+..+-...|
T Consensus 530 Pylv~L~~g~~sP 542 (668)
T COG4946 530 PYLVVLGRGYYSP 542 (668)
T ss_pred ceEEEecCCCCCh
Confidence 6777766655555
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=93.11 E-value=2.4 Score=38.91 Aligned_cols=49 Identities=20% Similarity=0.126 Sum_probs=35.6
Q ss_pred EEeccchhccCCC----eEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 135 ILLDWNEIAEKYG----YVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 135 vllD~n~la~~~~----~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
-+.|.+.+.-... .-.+..+.+||||.++|+ |.+...+..+||..|+-+
T Consensus 175 KvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas-----Ggkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 175 KVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS-----GGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred EEEccCCcchhhccccccccEEEEEECCCCCEEec-----CCCCceEEEEEccCCcee
Confidence 4577776542111 124667889999999998 777788999999998754
No 31
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=92.89 E-value=1.4 Score=42.40 Aligned_cols=134 Identities=12% Similarity=0.136 Sum_probs=80.5
Q ss_pred EEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC------------------------------eEEEEECCC
Q 040506 149 VHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP------------------------------RVLCTKLGS 198 (365)
Q Consensus 149 ~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~------------------------------~v~~h~lGt 198 (365)
..++..++.|+|++|+= ++=..+.++||+.|++.+- +||=.|-|.
T Consensus 262 ~RVs~VafHPsG~~L~T-----asfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGT-----ASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR 336 (459)
T ss_pred hhheeeeecCCCceeee-----cccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc
Confidence 46778889999999974 3446689999999987542 566555553
Q ss_pred CCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC-ceeec-Ccc------c-cCCcEEEEEEecCc
Q 040506 199 DSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD-QSISE-NEE------C-SSGDYYLARCRAEK 269 (365)
Q Consensus 199 ~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~-~~~~~-~~~------~-~~~~~~l~~~~~~~ 269 (365)
. .+++++ ...--+++..||.| |.+.+.++..+-.||=+.... .|.++ |.+ + .....+|+++...+
T Consensus 337 ~----im~L~g-H~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 337 C----IMFLAG-HIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred E----EEEecc-cccceeeEeECCCc-eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCc
Confidence 2 455565 32334567889998 556666666677788665332 44454 321 1 13456777765432
Q ss_pred C----CCCCceEE---eCCCCCceEeEEEEeCC
Q 040506 270 L----YSANWQNI---ILPGEDISLQDMDIFDG 295 (365)
Q Consensus 270 ~----~~~~w~~v---i~~~~~~~l~~v~~~~~ 295 (365)
. +...|+.+ .-++ ..+-++++..+
T Consensus 411 t~kiWs~~~~~~~ksLaGHe--~kV~s~Dis~d 441 (459)
T KOG0272|consen 411 TVKIWSTRTWSPLKSLAGHE--GKVISLDISPD 441 (459)
T ss_pred ceeeecCCCcccchhhcCCc--cceEEEEeccC
Confidence 1 22456543 3333 23556666543
No 32
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.66 E-value=0.24 Score=30.98 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=17.4
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEE
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQ 178 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~ 178 (365)
...+||||++|+|+-...+.-.+.|+
T Consensus 13 ~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 13 SPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CEEEecCCCEEEEEecCCCCCCcCEE
Confidence 45799999999999998832233344
No 33
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=91.84 E-value=1.1 Score=39.10 Aligned_cols=62 Identities=26% Similarity=0.291 Sum_probs=41.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
...+.+||+|++||++-- |+-...|.++|+.+.+. |... +......+..||||+|++..
T Consensus 103 ~n~i~wsP~G~~l~~~g~--~n~~G~l~~wd~~~~~~------------------i~~~-~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGF--GNLNGDLEFWDVRKKKK------------------ISTF-EHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred ceEEEECCCCCEEEEEEc--cCCCcEEEEEECCCCEE------------------eecc-ccCcEEEEEEcCCCCEEEEE
Confidence 346789999999999743 34446799999986653 1111 11223557789999999866
Q ss_pred eCC
Q 040506 231 SNS 233 (365)
Q Consensus 231 ~~~ 233 (365)
...
T Consensus 162 ~t~ 164 (194)
T PF08662_consen 162 TTS 164 (194)
T ss_pred Eec
Confidence 543
No 34
>PRK01742 tolB translocation protein TolB; Provisional
Probab=90.86 E-value=13 Score=36.62 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=38.7
Q ss_pred CCEEEEEEcCC-CCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceE
Q 040506 160 HNFLAYTIDTS-GDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSE 238 (365)
Q Consensus 160 g~~la~~~d~~-G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tse 238 (365)
++++||..+.. |.+.++|+++|...+.. ..+.... .....+..|+||++|+..+.......
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~----------------~~lt~~~--~~v~~p~wSPDG~~la~~s~~~~~~~ 229 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQ----------------FIVNRSS--QPLMSPAWSPDGSKLAYVSFENKKSQ 229 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCc----------------eEeccCC--CccccceEcCCCCEEEEEEecCCCcE
Confidence 67899987754 45578999999865432 0111111 11223455777777765554433456
Q ss_pred EEEEeC
Q 040506 239 EGLCDR 244 (365)
Q Consensus 239 v~~~d~ 244 (365)
+|+.|.
T Consensus 230 i~i~dl 235 (429)
T PRK01742 230 LVVHDL 235 (429)
T ss_pred EEEEeC
Confidence 777664
No 35
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=90.65 E-value=1.7 Score=41.72 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=48.1
Q ss_pred EeCCCCCEEEEEEc-----CCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 155 RVSPDHNFLAYTID-----TSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 155 ~~Spdg~~la~~~d-----~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
.+||||+.+..+.. ..|.+.-.|.|+|++|++.+ ....+|..+.. ++- +. -..+..|+||++|++
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~---~~i~~p~~p~~--~~~--~~---~~~~~ls~dgk~l~V 121 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI---ADIELPEGPRF--LVG--TY---PWMTSLTPDNKTLLF 121 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE---eEEccCCCchh--hcc--Cc---cceEEECCCCCEEEE
Confidence 39999999988877 56777778999999999863 33344432110 111 11 112456788888776
Q ss_pred EeCCCcceEEEEEeC
Q 040506 230 NSNSRASSEEGLCDR 244 (365)
Q Consensus 230 ~~~~~~tsev~~~d~ 244 (365)
. +....+.|-++|.
T Consensus 122 ~-n~~p~~~V~VvD~ 135 (352)
T TIGR02658 122 Y-QFSPSPAVGVVDL 135 (352)
T ss_pred e-cCCCCCEEEEEEC
Confidence 4 2222355666663
No 36
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=90.57 E-value=5.9 Score=39.23 Aligned_cols=120 Identities=19% Similarity=0.101 Sum_probs=71.8
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCC
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNS 233 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~ 233 (365)
-.+||+++.++|..-..+. ...+++.|+.+|+. .++++ |.. .......|+||++|+.....
T Consensus 198 p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~------~~i~~--------~~g----~~~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKR------PVILN--------FNG----NNGAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred cccCcCCCceEEEEEecCC-CceEEEEeccCCcc------ceeec--------cCC----ccCCccCCCCCCEEEEEECC
Confidence 4689999999997433332 16677778877753 11111 221 11124569999999998888
Q ss_pred CcceEEEEEeCCCceeecCccccCCcEEEEEEecCcCCCCCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEe
Q 040506 234 RASSEEGLCDRCDQSISENEECSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSID 313 (365)
Q Consensus 234 ~~tsev~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~ 313 (365)
....++|+.|... .+. ..+.+....+..+ .+...+++||..--+.|.++|.+++
T Consensus 259 dg~~~iy~~dl~~-----------~~~----~~Lt~~~gi~~~P-----------s~spdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 259 DGSPDIYLMDLDG-----------KNL----PRLTNGFGINTSP-----------SWSPDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred CCCccEEEEcCCC-----------Ccc----eecccCCccccCc-----------cCCCCCCEEEEEeCCCCCcceEEEC
Confidence 7778999887543 110 0011100001111 2223356777778888999999999
Q ss_pred CCccc
Q 040506 314 LSINF 318 (365)
Q Consensus 314 l~~~~ 318 (365)
+++..
T Consensus 313 ~~g~~ 317 (425)
T COG0823 313 LEGSQ 317 (425)
T ss_pred CCCCc
Confidence 87653
No 37
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=11 Score=35.15 Aligned_cols=90 Identities=23% Similarity=0.252 Sum_probs=54.2
Q ss_pred eEEEeccchhccCCCeEEE---eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEee
Q 040506 133 EEILLDWNEIAEKYGYVHV---GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTE 209 (365)
Q Consensus 133 ~evllD~n~la~~~~~~~~---~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e 209 (365)
.-.|.|.+.- +..|...+ ...++.|+|-.+|.+. |++ .|+++|+.+=. ..+ -.......
T Consensus 123 tvrLWDlR~~-~cqg~l~~~~~pi~AfDp~GLifA~~~---~~~--~IkLyD~Rs~d-----------kgP-F~tf~i~~ 184 (311)
T KOG1446|consen 123 TVRLWDLRVK-KCQGLLNLSGRPIAAFDPEGLIFALAN---GSE--LIKLYDLRSFD-----------KGP-FTTFSITD 184 (311)
T ss_pred eEEeeEecCC-CCceEEecCCCcceeECCCCcEEEEec---CCC--eEEEEEecccC-----------CCC-ceeEccCC
Confidence 3456777622 22233322 3456889998888774 444 78999987521 111 11223333
Q ss_pred CCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEe
Q 040506 210 GDSGFCVDITSTKDGKFITVNSNSRASSEEGLCD 243 (365)
Q Consensus 210 ~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d 243 (365)
++..-|-.+..|+||++|+|+.+. +-++++|
T Consensus 185 ~~~~ew~~l~FS~dGK~iLlsT~~---s~~~~lD 215 (311)
T KOG1446|consen 185 NDEAEWTDLEFSPDGKSILLSTNA---SFIYLLD 215 (311)
T ss_pred CCccceeeeEEcCCCCEEEEEeCC---CcEEEEE
Confidence 444557778999999999998655 3467776
No 38
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.71 E-value=1.5 Score=42.41 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=23.9
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
++|-=-++|||+.+.|-.-..|.....|.-+|+.|++.
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 34434589999999997776777777789999999864
No 39
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=89.60 E-value=12 Score=37.01 Aligned_cols=146 Identities=14% Similarity=0.050 Sum_probs=79.7
Q ss_pred EeeEEeCCCCCEEEEEEc--CCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEE
Q 040506 151 VGTCRVSPDHNFLAYTID--TSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFIT 228 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d--~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~ 228 (365)
+..-++||||+++|++.= ..+-....|++.+.+.|+.- ++.|=. ..|.--+..++||+.|+
T Consensus 81 vnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~k---------------RiTyfG--r~fT~VaG~~~dg~iiV 143 (668)
T COG4946 81 VNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAK---------------RITYFG--RRFTRVAGWIPDGEIIV 143 (668)
T ss_pred eccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEE---------------EEEEec--cccceeeccCCCCCEEE
Confidence 344579999999999433 23346667999999999851 112211 12322245688888777
Q ss_pred EEeCCCc---ceEEEEEeCCC------------ceeecCc------------cc----cCCcEEEEEEecCcCCCCCceE
Q 040506 229 VNSNSRA---SSEEGLCDRCD------------QSISENE------------EC----SSGDYYLARCRAEKLYSANWQN 277 (365)
Q Consensus 229 i~~~~~~---tsev~~~d~~~------------~~~~~~~------------~~----~~~~~~l~~~~~~~~~~~~w~~ 277 (365)
.+-...- .+++|-+..++ .++..++ .| +|.+-+|-.... +...++-
T Consensus 144 ~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d---~g~tFeK 220 (668)
T COG4946 144 STDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSD---GGKTFEK 220 (668)
T ss_pred EeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEec---CCcceee
Confidence 6654432 15666665332 1111111 11 122222221111 1123333
Q ss_pred EeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 278 IILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 278 vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
++--+ ..+..=.+.+++++...-.+|...|...+|++.+
T Consensus 221 ~vdl~--~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkD 259 (668)
T COG4946 221 FVDLD--GNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKD 259 (668)
T ss_pred eeecC--CCcCCceEEcceEEEEecccCccceEEeccCCch
Confidence 33211 1244555678888888888999999999988654
No 40
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=88.92 E-value=3 Score=40.47 Aligned_cols=69 Identities=23% Similarity=0.359 Sum_probs=42.0
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
+...+||||+++..+ +.+| .+.++|+.+++.+ ...+.|. .-.++..|+||+|+++..
T Consensus 40 ~~~~~s~Dgr~~yv~-~rdg----~vsviD~~~~~~v---~~i~~G~---------------~~~~i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVA-NRDG----TVSVIDLATGKVV---ATIKVGG---------------NPRGIAVSPDGKYVYVAN 96 (369)
T ss_dssp EEEE-TT-SSEEEEE-ETTS----EEEEEETTSSSEE---EEEE-SS---------------EEEEEEE--TTTEEEEEE
T ss_pred eEEEecCCCCEEEEE-cCCC----eEEEEECCcccEE---EEEecCC---------------CcceEEEcCCCCEEEEEe
Confidence 345789999985554 6554 5899999999853 3334442 223567899999998764
Q ss_pred CCCcceEEEEEeCC
Q 040506 232 NSRASSEEGLCDRC 245 (365)
Q Consensus 232 ~~~~tsev~~~d~~ 245 (365)
.. .+.+.++|.+
T Consensus 97 ~~--~~~v~v~D~~ 108 (369)
T PF02239_consen 97 YE--PGTVSVIDAE 108 (369)
T ss_dssp EE--TTEEEEEETT
T ss_pred cC--CCceeEeccc
Confidence 33 3466777754
No 41
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=87.84 E-value=6.5 Score=38.14 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=22.2
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
++.+|+||++++.+-...| .+.|+|.+|.+.+.
T Consensus 82 ~i~~s~DG~~~~v~n~~~~----~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPG----TVSVIDAETLEPVK 114 (369)
T ss_dssp EEEE--TTTEEEEEEEETT----EEEEEETTT--EEE
T ss_pred eEEEcCCCCEEEEEecCCC----ceeEecccccccee
Confidence 4789999999988865444 68889988876543
No 42
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=87.64 E-value=6.4 Score=34.37 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=45.2
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
+..+++||+|+.+|+..... ...+.++|++.... +.+++ ... -.+..||+|++|++.
T Consensus 62 I~~~~WsP~g~~favi~g~~---~~~v~lyd~~~~~i------~~~~~-------------~~~-n~i~wsP~G~~l~~~ 118 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSM---PAKVTLYDVKGKKI------FSFGT-------------QPR-NTISWSPDGRFLVLA 118 (194)
T ss_pred eEEEEECcCCCEEEEEEccC---CcccEEEcCcccEe------EeecC-------------CCc-eEEEECCCCCEEEEE
Confidence 66789999999988774322 22788999852211 12221 111 136679999999987
Q ss_pred eCCCcceEEEEEeCC
Q 040506 231 SNSRASSEEGLCDRC 245 (365)
Q Consensus 231 ~~~~~tsev~~~d~~ 245 (365)
.......++.+.|..
T Consensus 119 g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 119 GFGNLNGDLEFWDVR 133 (194)
T ss_pred EccCCCcEEEEEECC
Confidence 654444566666644
No 43
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=2.7 Score=39.04 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=43.3
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEee-C-CCCeEEEEEEcCCCcEE
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTE-G-DSGFCVDITSTKDGKFI 227 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e-~-d~~~~~~~~~s~d~~~l 227 (365)
....+.+|||||+++++.. ...++++|.=+|... + -|++ + ....-+++..|||++|+
T Consensus 189 ew~~l~FS~dGK~iLlsT~-----~s~~~~lDAf~G~~~-----~-----------tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTN-----ASFIYLLDAFDGTVK-----S-----------TFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred ceeeeEEcCCCCEEEEEeC-----CCcEEEEEccCCcEe-----e-----------eEeeccCCCCcceeEEECCCCcEE
Confidence 3456789999999999865 235889998888742 1 1211 1 11234677889999999
Q ss_pred EEEeCCC
Q 040506 228 TVNSNSR 234 (365)
Q Consensus 228 ~i~~~~~ 234 (365)
+..+..+
T Consensus 248 l~gs~dg 254 (311)
T KOG1446|consen 248 LSGSDDG 254 (311)
T ss_pred EEecCCC
Confidence 8776554
No 44
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=85.63 E-value=4.8 Score=37.87 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=25.0
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
-.++||+|+|+|-.. +|.+.|+|.+|-+.+.
T Consensus 13 ~c~fSp~g~yiAs~~------~yrlviRd~~tlq~~q 43 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS------RYRLVIRDSETLQLHQ 43 (447)
T ss_pred ceeECCCCCeeeeee------eeEEEEeccchhhHHH
Confidence 357999999999765 4689999999977653
No 45
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=85.54 E-value=48 Score=34.25 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=60.6
Q ss_pred EEEEECCCCCCC----CccEE--eeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC---ceeecC-------c-
Q 040506 191 VLCTKLGSDSTD----DAPIF--TEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD---QSISEN-------E- 253 (365)
Q Consensus 191 v~~h~lGt~~~~----d~lvf--~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~---~~~~~~-------~- 253 (365)
|-.|++|+...+ ...++ --+++.+......||||.+|.|..-+.. .+|-+.-++ ...+++ .
T Consensus 355 v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~--~iy~L~~~~~vk~~~v~~~~~~~~~a~ 432 (691)
T KOG2048|consen 355 VDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRT--KIYRLQPDPNVKVINVDDVPLALLDAS 432 (691)
T ss_pred ccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccce--EEEEeccCcceeEEEeccchhhhccce
Confidence 334688887322 22333 2344455555678999999988754432 333332111 000000 0
Q ss_pred ----cccCCcEE--------EEEEecCcCCCCCceEEeCCCCCceEeEEEE--eCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 254 ----ECSSGDYY--------LARCRAEKLYSANWQNIILPGEDISLQDMDI--FDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 254 ----~~~~~~~~--------l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~--~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
..++.... |....+..|...+...+.+....-.|..+.. .+++|++.. +...|.+++|.+..
T Consensus 433 ~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~---t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 433 AISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS---TRGQIFVYNLETLE 508 (691)
T ss_pred eeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe---ccceEEEEEcccce
Confidence 00111122 2223333444434444433312223544444 577888775 77889999997654
No 46
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=85.22 E-value=4.8 Score=38.61 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=48.8
Q ss_pred CCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEE-eeEEe-CCCCCEEEEEE
Q 040506 90 GPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHV-GTCRV-SPDHNFLAYTI 167 (365)
Q Consensus 90 g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~-~~~~~-Spdg~~la~~~ 167 (365)
+..+++.+....++...++++... .+..++++. .. ..+|+.. ..+.+ .+++..+++..
T Consensus 195 ~~~l~~~~~nR~q~~~~l~~~d~~----------------tg~~~~~~~---e~-~~~Wv~~~~~~~~~~~~~~~~l~~s 254 (353)
T PF00930_consen 195 GKRLWVQWLNRDQNRLDLVLCDAS----------------TGETRVVLE---ET-SDGWVDVYDPPHFLGPDGNEFLWIS 254 (353)
T ss_dssp TEEEEEEEEETTSTEEEEEEEEEC----------------TTTCEEEEE---EE-SSSSSSSSSEEEE-TTTSSEEEEEE
T ss_pred CcEEEEEEcccCCCEEEEEEEECC----------------CCceeEEEE---ec-CCcceeeecccccccCCCCEEEEEE
Confidence 445888888888888888877532 133455441 11 1244422 12233 48888888888
Q ss_pred cCCCCeEEEEEEEECCCCc
Q 040506 168 DTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 168 d~~G~e~~~l~v~Dl~tg~ 186 (365)
...| +..|+.+|+.++.
T Consensus 255 ~~~G--~~hly~~~~~~~~ 271 (353)
T PF00930_consen 255 ERDG--YRHLYLYDLDGGK 271 (353)
T ss_dssp ETTS--SEEEEEEETTSSE
T ss_pred EcCC--CcEEEEEcccccc
Confidence 8777 7789999998875
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.10 E-value=3.4 Score=42.94 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=22.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
+-.+++|+||||||- |++...||||.+-.
T Consensus 270 Iw~mKFS~DGKyLAs-----aGeD~virVWkVie 298 (712)
T KOG0283|consen 270 IWAMKFSHDGKYLAS-----AGEDGVIRVWKVIE 298 (712)
T ss_pred EEEEEeCCCCceeee-----cCCCceEEEEEEec
Confidence 335789999999994 56677899998754
No 48
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=84.75 E-value=7.8 Score=37.30 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=47.7
Q ss_pred EEeCCCCCEEEEEEcCCC-----CeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEE
Q 040506 154 CRVSPDHNFLAYTIDTSG-----DEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFIT 228 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G-----~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~ 228 (365)
++++|||+++-++...++ ...-++.|+|++|++. +.+..+|.. .+ ++..|+||+.++
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv---i~~i~vG~~-------------~~--~iavS~Dgkp~l 314 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR---LRKIELGHE-------------ID--SINVSQDAKPLL 314 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE---EEEEeCCCc-------------ee--eEEECCCCCeEE
Confidence 789999999888665333 1123699999999985 444455531 12 367899999544
Q ss_pred EEeCCCcceEEEEEeCC
Q 040506 229 VNSNSRASSEEGLCDRC 245 (365)
Q Consensus 229 i~~~~~~tsev~~~d~~ 245 (365)
+..+. .++.|.++|..
T Consensus 315 yvtn~-~s~~VsViD~~ 330 (352)
T TIGR02658 315 YALST-GDKTLYIFDAE 330 (352)
T ss_pred EEeCC-CCCcEEEEECc
Confidence 44333 34568888854
No 49
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.34 E-value=3.5 Score=39.64 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=26.4
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.+..+.+||||+.||+. |.| .++||++.+|..+
T Consensus 188 eV~DL~FS~dgk~lasi----g~d--~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASI----GAD--SARVWSVNTGAAL 220 (398)
T ss_pred ccccceeCCCCcEEEEe----cCC--ceEEEEeccCchh
Confidence 56778899999999986 444 6899999999443
No 50
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.26 E-value=28 Score=33.21 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=36.9
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
....+.+||||++|-++- .|.+...++-.|-++|+.. .+- .+-.+.+.+.. +..++||+||++
T Consensus 246 ~~~~i~ispdg~~lyvsn--r~~~sI~vf~~d~~~g~l~-~~~------------~~~~~G~~Pr~--~~~s~~g~~l~V 308 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSN--RGSNSISVFDLDPATGTLT-LVQ------------TVPTGGKFPRH--FAFSPDGRYLYV 308 (345)
T ss_dssp SEEEEEE-TTSSEEEEEE--CTTTEEEEEEECTTTTTEE-EEE------------EEEESSSSEEE--EEE-TTSSEEEE
T ss_pred CceeEEEecCCCEEEEEe--ccCCEEEEEEEecCCCceE-EEE------------EEeCCCCCccE--EEEeCCCCEEEE
Confidence 355678999999876653 4666544444444666541 111 12222232333 456999999988
Q ss_pred EeCCC
Q 040506 230 NSNSR 234 (365)
Q Consensus 230 ~~~~~ 234 (365)
.....
T Consensus 309 a~~~s 313 (345)
T PF10282_consen 309 ANQDS 313 (345)
T ss_dssp EETTT
T ss_pred EecCC
Confidence 64443
No 51
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.87 E-value=34 Score=32.21 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=27.8
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR 183 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~ 183 (365)
-|--.+||||++|.-++..-.+-+-.|-|+|++
T Consensus 53 yGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 53 YGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 344479999999999988888888899999998
No 52
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=83.71 E-value=42 Score=32.10 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=50.5
Q ss_pred EEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeE----EEEEE-cCC
Q 040506 149 VHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFC----VDITS-TKD 223 (365)
Q Consensus 149 ~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~----~~~~~-s~d 223 (365)
..+..+.+++|++.|++..-........+.+.|++||+. + +++++..+.|. ..... ..+
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~--~--------------~~~~e~~~~Wv~~~~~~~~~~~~~ 247 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET--R--------------VVLEETSDGWVDVYDPPHFLGPDG 247 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC--E--------------EEEEEESSSSSSSSSEEEE-TTTS
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce--e--------------EEEEecCCcceeeecccccccCCC
Confidence 345667889999978887777888888999999998864 2 23333332221 11112 344
Q ss_pred CcEEEEEeCCCcceEEEEEeCCC
Q 040506 224 GKFITVNSNSRASSEEGLCDRCD 246 (365)
Q Consensus 224 ~~~l~i~~~~~~tsev~~~d~~~ 246 (365)
+.+|++.. ......||+++.++
T Consensus 248 ~~~l~~s~-~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 248 NEFLWISE-RDGYRHLYLYDLDG 269 (353)
T ss_dssp SEEEEEEE-TTSSEEEEEEETTS
T ss_pred CEEEEEEE-cCCCcEEEEEcccc
Confidence 56666665 33357788887553
No 53
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=83.33 E-value=4.6 Score=42.29 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=27.8
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.+..+++|||||+|+-+-- ..+||+||+.||..+
T Consensus 578 ritd~~FS~DgrWlisasm-----D~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASM-----DSTIRTWDLPTGTLI 611 (910)
T ss_pred ceeeeEeCCCCcEEEEeec-----CCcEEEEeccCccee
Confidence 4678899999999987643 347999999999864
No 54
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=83.11 E-value=9.6 Score=35.67 Aligned_cols=64 Identities=19% Similarity=0.355 Sum_probs=43.9
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
.-+.++-+|.++|=+ +..| .-|||||..+|+. ++-.|+|++.++ ||. +..|++..||.+.+
T Consensus 185 acv~Ln~~Gt~vATa-StkG---TLIRIFdt~~g~~---l~E~RRG~d~A~---iy~---------iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 185 ACVALNLQGTLVATA-STKG---TLIRIFDTEDGTL---LQELRRGVDRAD---IYC---------IAFSPNSSWLAVSS 245 (346)
T ss_pred eEEEEcCCccEEEEe-ccCc---EEEEEEEcCCCcE---eeeeecCCchhe---EEE---------EEeCCCccEEEEEc
Confidence 344566677766644 3344 3599999999984 666788886532 333 57799999998876
Q ss_pred CCC
Q 040506 232 NSR 234 (365)
Q Consensus 232 ~~~ 234 (365)
..+
T Consensus 246 dKg 248 (346)
T KOG2111|consen 246 DKG 248 (346)
T ss_pred CCC
Confidence 554
No 55
>PRK10115 protease 2; Provisional
Probab=83.11 E-value=60 Score=34.36 Aligned_cols=76 Identities=9% Similarity=0.028 Sum_probs=37.8
Q ss_pred eCCeEEEEEccCC-CccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEE
Q 040506 89 WGPWLYYQYIPEG-KEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTI 167 (365)
Q Consensus 89 ~g~~~Y~~~~~~~-~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~ 167 (365)
.|..+||.++..+ .....+||..... +....++|+.. .+ +.+.++. ..|.|++++.+..
T Consensus 182 D~~~~~y~~~~~~~~~~~~v~~h~lgt--------------~~~~d~lv~~e----~~-~~~~~~~-~~s~d~~~l~i~~ 241 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLPYQVWRHTIGT--------------PASQDELVYEE----KD-DTFYVSL-HKTTSKHYVVIHL 241 (686)
T ss_pred CCCEEEEEEecCCCCCCCEEEEEECCC--------------ChhHCeEEEee----CC-CCEEEEE-EEcCCCCEEEEEE
Confidence 5778888888653 1223445544320 11133455541 11 2223433 4577999887665
Q ss_pred cCCCCeEEEEEEEE--CCCCc
Q 040506 168 DTSGDEQFMLQIKD--LRNQC 186 (365)
Q Consensus 168 d~~G~e~~~l~v~D--l~tg~ 186 (365)
..+-+ ..+.+++ +.+++
T Consensus 242 ~~~~~--~~~~l~~~~~~~~~ 260 (686)
T PRK10115 242 ASATT--SEVLLLDAELADAE 260 (686)
T ss_pred ECCcc--ccEEEEECcCCCCC
Confidence 53332 3455555 44454
No 56
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=82.48 E-value=4.4 Score=38.84 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=42.8
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCC-eEEEEEEcCCCcEEEEEeC
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSG-FCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~-~~~~~~~s~d~~~l~i~~~ 232 (365)
..+||+|++|| .|+-..++|+||+.|... +|..+-+. |-+.+..||||++|.
T Consensus 121 ~~fsp~g~~l~-----tGsGD~TvR~WD~~TeTp------------------~~t~KgH~~WVlcvawsPDgk~iA---- 173 (480)
T KOG0271|consen 121 VQFSPTGSRLV-----TGSGDTTVRLWDLDTETP------------------LFTCKGHKNWVLCVAWSPDGKKIA---- 173 (480)
T ss_pred EEecCCCceEE-----ecCCCceEEeeccCCCCc------------------ceeecCCccEEEEEEECCCcchhh----
Confidence 47999999987 355567999999988654 34433333 445578899998863
Q ss_pred CCc-ceEEEEEe
Q 040506 233 SRA-SSEEGLCD 243 (365)
Q Consensus 233 ~~~-tsev~~~d 243 (365)
+++ ..+|.+.|
T Consensus 174 SG~~dg~I~lwd 185 (480)
T KOG0271|consen 174 SGSKDGSIRLWD 185 (480)
T ss_pred ccccCCeEEEec
Confidence 333 24566666
No 57
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=82.26 E-value=9.8 Score=34.41 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=43.6
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
.+.+||||++++++-+.+| .++++|+++++.+.++-.+.-+.. +.......+..++|++++++...
T Consensus 161 ~~~~s~dg~~l~~~~~~~~----~v~i~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGG----TVSVIDVATRKVIKKITFEIPGVH----------PEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred EEEECCCCCEEEEEcCCCC----EEEEEEcCcceeeeeeeecccccc----------cccCCccceEECCCCCEEEEEcC
Confidence 4578999999887754344 599999999875322211100100 01111234567899999877543
Q ss_pred CCcceEEEEEeC
Q 040506 233 SRASSEEGLCDR 244 (365)
Q Consensus 233 ~~~tsev~~~d~ 244 (365)
.. +.+.++|.
T Consensus 227 ~~--~~i~v~d~ 236 (300)
T TIGR03866 227 PA--NRVAVVDA 236 (300)
T ss_pred CC--CeEEEEEC
Confidence 32 34666553
No 58
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=81.82 E-value=18 Score=32.99 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=26.5
Q ss_pred EEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 149 VHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 149 ~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
..+....+-|||++|+-+-+.| .++|+++-++...
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG-----~cyvW~l~~~~~~ 202 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKG-----NCYVWRLLNHQTA 202 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCc-----cEEEEEccCCCcc
Confidence 4566778999999998775533 5999999886543
No 59
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=81.61 E-value=9.3 Score=34.69 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=50.0
Q ss_pred eCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC---------------------------eEEEEECCCCCCCCccEEe
Q 040506 156 VSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP---------------------------RVLCTKLGSDSTDDAPIFT 208 (365)
Q Consensus 156 ~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~---------------------------~v~~h~lGt~~~~d~lvf~ 208 (365)
+--||+++. .|+|..+++|+|+.+-.... .|+.|.||+..-..+|+=+
T Consensus 91 F~~dgrWMy-----TgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 91 FQCDGRWMY-----TGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EeecCeEEE-----ecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 455777663 47888999999998732110 6888899987654445443
Q ss_pred eCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEE
Q 040506 209 EGDSGFCVDITSTKDGKFITVNSNSRASSEEGL 241 (365)
Q Consensus 209 e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~ 241 (365)
+ + .+--++..-+||++++.. +++.+--+|-
T Consensus 166 ~-~-~~i~sl~v~~dgsml~a~-nnkG~cyvW~ 195 (311)
T KOG0315|consen 166 D-D-TSIQSLTVMPDGSMLAAA-NNKGNCYVWR 195 (311)
T ss_pred C-C-cceeeEEEcCCCcEEEEe-cCCccEEEEE
Confidence 2 2 344567789999988654 4444434443
No 60
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=81.51 E-value=13 Score=38.71 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=22.2
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.++-+.+.|+..|+| +|+...++|+||+.+|..+
T Consensus 537 DV~cv~FHPNs~Y~a-----TGSsD~tVRlWDv~~G~~V 570 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVA-----TGSSDRTVRLWDVSTGNSV 570 (707)
T ss_pred ccceEEECCcccccc-----cCCCCceEEEEEcCCCcEE
Confidence 345556777777765 4555667788888777543
No 61
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.26 E-value=1.5 Score=45.25 Aligned_cols=71 Identities=28% Similarity=0.407 Sum_probs=48.3
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
.+..+++||+|++|| .|+|...|.+||+.+|+.+.++..| -|+ -+ ++..|.||..|+.
T Consensus 579 ~V~al~~Sp~Gr~La-----Sg~ed~~I~iWDl~~~~~v~~l~~H-t~t--------------i~--SlsFS~dg~vLas 636 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLA-----SGDEDGLIKIWDLANGSLVKQLKGH-TGT--------------IY--SLSFSRDGNVLAS 636 (707)
T ss_pred ceEEEEEcCCCceEe-----ecccCCcEEEEEcCCCcchhhhhcc-cCc--------------ee--EEEEecCCCEEEe
Confidence 466788999999998 5788889999999999876544444 221 12 3566999987754
Q ss_pred EeCCCcceEEEEEeCC
Q 040506 230 NSNSRASSEEGLCDRC 245 (365)
Q Consensus 230 ~~~~~~tsev~~~d~~ 245 (365)
. +..+.|.+-|..
T Consensus 637 g---g~DnsV~lWD~~ 649 (707)
T KOG0263|consen 637 G---GADNSVRLWDLT 649 (707)
T ss_pred c---CCCCeEEEEEch
Confidence 3 233445555643
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.72 E-value=8.5 Score=37.33 Aligned_cols=85 Identities=27% Similarity=0.336 Sum_probs=50.2
Q ss_pred EEeeEEeCCCCCEE-EEEEcCCCCeEEEEEEEECCCCcccC------------eEEE-----EECCCCCCCCccEEe-eC
Q 040506 150 HVGTCRVSPDHNFL-AYTIDTSGDEQFMLQIKDLRNQCIVP------------RVLC-----TKLGSDSTDDAPIFT-EG 210 (365)
Q Consensus 150 ~~~~~~~Spdg~~l-a~~~d~~G~e~~~l~v~Dl~tg~~l~------------~v~~-----h~lGt~~~~d~lvf~-e~ 210 (365)
.+..+.+|||.++| |++.+ |. +..+|+.||..+. .+|+ ...|.+ |.-++. .-
T Consensus 271 ~V~yi~wSPDdryLlaCg~~----e~--~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~---dr~i~~wdl 341 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFD----EV--LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP---DRTIIMWDL 341 (519)
T ss_pred ceEEEEECCCCCeEEecCch----Hh--eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC---CCcEEEecC
Confidence 46677899998865 33333 32 8899999997543 2222 233433 122211 11
Q ss_pred CC-----------CeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC
Q 040506 211 DS-----------GFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD 246 (365)
Q Consensus 211 d~-----------~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~ 246 (365)
|+ +--.++..|.||+|+++.. ....+.+++++.
T Consensus 342 Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~---~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 342 DGNILGNWEGVRDPKVHDLAITYDGKYVLLVT---VDKKIRLYNREA 385 (519)
T ss_pred CcchhhcccccccceeEEEEEcCCCcEEEEEe---cccceeeechhh
Confidence 11 1234577899999988765 346778888664
No 63
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=79.42 E-value=7.8 Score=35.93 Aligned_cols=60 Identities=15% Similarity=0.323 Sum_probs=43.2
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCe-EEEEEEcCCCcEEE
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGF-CVDITSTKDGKFIT 228 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~-~~~~~~s~d~~~l~ 228 (365)
.+..+++-|+|.-+| .|+|..++|.+||.+.+- ..+|+....-+ ..++..|.+||+||
T Consensus 231 DINsv~ffP~G~afa-----tGSDD~tcRlyDlRaD~~----------------~a~ys~~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFA-----TGSDDATCRLYDLRADQE----------------LAVYSHDSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred ccceEEEccCCCeee-----ecCCCceeEEEeecCCcE----------------EeeeccCcccCCceeEEEcccccEEE
Confidence 456777888887554 688899999999987653 35665322222 35688899999998
Q ss_pred EE
Q 040506 229 VN 230 (365)
Q Consensus 229 i~ 230 (365)
..
T Consensus 290 ag 291 (343)
T KOG0286|consen 290 AG 291 (343)
T ss_pred ee
Confidence 86
No 64
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=78.58 E-value=26 Score=31.56 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=18.7
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
..++|||+.++.+-.. ...|+++|+.+|+.+
T Consensus 36 l~~~~dg~~l~~~~~~----~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 36 ITLSKDGKLLYVCASD----SDTIQVIDLATGEVI 66 (300)
T ss_pred eEECCCCCEEEEEECC----CCeEEEEECCCCcEE
Confidence 5677888765544321 234777787776643
No 65
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=78.53 E-value=98 Score=32.99 Aligned_cols=184 Identities=13% Similarity=0.081 Sum_probs=97.0
Q ss_pred EEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEee-CCC
Q 040506 134 EILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTE-GDS 212 (365)
Q Consensus 134 evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e-~d~ 212 (365)
+-+||++.+.+... ..-++++|++|+++.++.+.| +|-++++.+| +.|+..|..+..+..|-.- -|.
T Consensus 436 ~~~L~~~~~~~~~~--~~~av~vs~CGNF~~IG~S~G-----~Id~fNmQSG-----i~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 436 RHVLDPKRFKKDDI--NATAVCVSFCGNFVFIGYSKG-----TIDRFNMQSG-----IHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred cEEecCccccccCc--ceEEEEEeccCceEEEeccCC-----eEEEEEcccC-----eeecccccCccccCceeEEEecC
Confidence 45689998876422 234578999999999998843 5777888898 4677777554444333221 121
Q ss_pred CeEEEEEEcCCCcEEEEEeCCCcceEEEEEe--CCC--ceeecCc-----cccCCcEEEEEEecCcCCCCCceEEeCCCC
Q 040506 213 GFCVDITSTKDGKFITVNSNSRASSEEGLCD--RCD--QSISENE-----ECSSGDYYLARCRAEKLYSANWQNIILPGE 283 (365)
Q Consensus 213 ~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d--~~~--~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~w~~vi~~~~ 283 (365)
.-..-++.+.+|-..|-+-+.+. .+.+ ... ...+.|. ....+.|.+.-++...- .--+++.-+..
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~----l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~--kvvR~f~gh~n 577 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKV----LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR--KVVREFWGHGN 577 (910)
T ss_pred CCceEEEccCcceEEEEecCCcc----eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh--hhhHHhhcccc
Confidence 11112223333333222222211 1111 000 1111121 11346677776665421 11122323443
Q ss_pred CceEeEEEEe--CCEEEEEEecCCeeeEEEEeCCccccccccchhcCCCccccCCCCCeeeeecCCCCCC
Q 040506 284 DISLQDMDIF--DGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDF 351 (365)
Q Consensus 284 ~~~l~~v~~~--~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~ 351 (365)
.|.++++. +.+|+..-++ +.|++||+.++.- ++ -|-++....++++++|.||
T Consensus 578 --ritd~~FS~DgrWlisasmD---~tIr~wDlpt~~l------ID-----~~~vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 578 --RITDMTFSPDGRWLISASMD---STIRTWDLPTGTL------ID-----GLLVDSPCTSLSFSPNGDF 631 (910)
T ss_pred --ceeeeEeCCCCcEEEEeecC---CcEEEEeccCcce------ee-----eEecCCcceeeEECCCCCE
Confidence 47777775 4566655432 5688999987643 21 2444544557888888776
No 66
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=77.09 E-value=15 Score=35.70 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=39.4
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCCCCCc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDSTDDA 204 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~~~d~ 204 (365)
.-++.+||++|.|+-+..|.- .++.+||+||+... .|++..|-|- +.+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~--nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~--e~~ 115 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNR--NLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL--EER 115 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS---EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT----EE
T ss_pred CCCcCCCCCEEEEEeccCCCc--ceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC--cEE
Confidence 346799999999998887754 46899999997653 3444455553 456
Q ss_pred cEEeeCCCCeEE-EEE-EcCCCcEEEE
Q 040506 205 PIFTEGDSGFCV-DIT-STKDGKFITV 229 (365)
Q Consensus 205 lvf~e~d~~~~~-~~~-~s~d~~~l~i 229 (365)
+||+.++. |-- +.. ...|++.++.
T Consensus 116 ~vy~~p~~-~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 116 VVYEVPDD-WKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp EEEE--TT-EEEEEEEEE-TTSSEEEE
T ss_pred EEEECCcc-cccccceeeCCCccEEEE
Confidence 89998764 321 222 3556666533
No 67
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=76.83 E-value=62 Score=30.28 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=33.9
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
.+.++|||+++..+ + .++. .|.|+++.+.....++..+. .+ +..+. .+..++||++|++..
T Consensus 232 ~i~~~pdg~~lyv~-~-~~~~--~I~v~~i~~~~~~~~~~~~~-~~----------~~~p~---~~~~~~dg~~l~va~ 292 (330)
T PRK11028 232 DIHITPDGRHLYAC-D-RTAS--LISVFSVSEDGSVLSFEGHQ-PT----------ETQPR---GFNIDHSGKYLIAAG 292 (330)
T ss_pred eEEECCCCCEEEEe-c-CCCC--eEEEEEEeCCCCeEEEeEEE-ec----------cccCC---ceEECCCCCEEEEEE
Confidence 46799999987776 2 2322 67778876532110111111 01 11111 246799999998864
No 68
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=76.30 E-value=10 Score=37.24 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=55.0
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC---------------------------eEEEEECCCCCCC
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP---------------------------RVLCTKLGSDSTD 202 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~---------------------------~v~~h~lGt~~~~ 202 (365)
++-.|.+|||+++||+.=. . ..|++.-..|++++. +||.+.+++.
T Consensus 305 ~~e~FeVShd~~fia~~G~----~-G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~--- 376 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGN----N-GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN--- 376 (514)
T ss_pred hhheeEecCCCCeEEEccc----C-ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc---
Confidence 5678899999999888622 2 247788888887764 7999999886
Q ss_pred CccEEeeCCCC--eEEEEEEcCCCcEEEEEeCCCc
Q 040506 203 DAPIFTEGDSG--FCVDITSTKDGKFITVNSNSRA 235 (365)
Q Consensus 203 d~lvf~e~d~~--~~~~~~~s~d~~~l~i~~~~~~ 235 (365)
.+++.-.|.. .-.++..|.+|+|+.+.+.++.
T Consensus 377 -~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 377 -SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred -ceEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence 2455443332 3456777999999987776654
No 69
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=75.20 E-value=3.5 Score=41.10 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=26.5
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+..+++||||++||.. +.+| .|||||-.+-+.
T Consensus 292 ~in~f~FS~DG~~LA~V-SqDG----fLRvF~fdt~eL 324 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATV-SQDG----FLRIFDFDTQEL 324 (636)
T ss_pred cccceeEcCCCceEEEE-ecCc----eEEEeeccHHHH
Confidence 56789999999999976 4444 799999887664
No 70
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=73.70 E-value=12 Score=23.02 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=19.6
Q ss_pred EEEEEEcCCCcEEEEEeCCC--cceEEEE
Q 040506 215 CVDITSTKDGKFITVNSNSR--ASSEEGL 241 (365)
Q Consensus 215 ~~~~~~s~d~~~l~i~~~~~--~tsev~~ 241 (365)
......|+||++|+..++.. ...+||+
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 34467799999999988877 5567764
No 71
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=73.28 E-value=1.2e+02 Score=31.58 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=48.8
Q ss_pred eCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCe-EEEeeEEeCCCCCEEEEEE
Q 040506 89 WGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGY-VHVGTCRVSPDHNFLAYTI 167 (365)
Q Consensus 89 ~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~-~~~~~~~~Spdg~~la~~~ 167 (365)
+|..+||++.++...-..++|..... .....++|+..+ +.+| +++ .-|.+++++.+++
T Consensus 184 d~~~lfYt~~d~~~rp~kv~~h~~gt--------------~~~~d~lvyeE~----d~~f~~~v---~~s~s~~yi~i~~ 242 (682)
T COG1770 184 DGKTLFYTRLDENHRPDKVWRHRLGT--------------PGSSDELVYEEK----DDRFFLSV---GRSRSEAYIVISL 242 (682)
T ss_pred CCCeEEEEEEcCCCCcceEEEEecCC--------------CCCcceEEEEcC----CCcEEEEe---eeccCCceEEEEc
Confidence 47788888888875434455554321 013456667533 2233 344 4778899999887
Q ss_pred cCCCCeEEEEEEEECCCCcccC
Q 040506 168 DTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 168 d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
++.....+++.|....+..+
T Consensus 243 --~~~~tsE~~ll~a~~p~~~p 262 (682)
T COG1770 243 --GSHITSEVRLLDADDPEAEP 262 (682)
T ss_pred --CCCcceeEEEEecCCCCCce
Confidence 45566678888887766544
No 72
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=72.82 E-value=29 Score=34.66 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=60.0
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC------------------------------eEEEEECCCCCCC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP------------------------------RVLCTKLGSDSTD 202 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~------------------------------~v~~h~lGt~~~~ 202 (365)
-...||.-|.++...+..| ++.+||+......- +++...+++....
T Consensus 169 ll~ys~skr~lL~~asd~G----~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKG----AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred EeecccccceeeEeeccCC----eEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 4568888888888887777 68899996654321 7888999988888
Q ss_pred CccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEe
Q 040506 203 DAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCD 243 (365)
Q Consensus 203 d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d 243 (365)
+.|+|+.|- . .+..+++|.||.+....+ +|+..|
T Consensus 245 ~~l~y~~Pl---s-tvaf~~~G~~L~aG~s~G---~~i~YD 278 (673)
T KOG4378|consen 245 DRLTYSHPL---S-TVAFSECGTYLCAGNSKG---ELIAYD 278 (673)
T ss_pred ceeeecCCc---c-eeeecCCceEEEeecCCc---eEEEEe
Confidence 899998643 2 367899999998765544 566666
No 73
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=71.95 E-value=1.4e+02 Score=31.62 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=54.8
Q ss_pred eEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc-ccC---------eEEEEECCCC----------CCCC----
Q 040506 148 YVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC-IVP---------RVLCTKLGSD----------STDD---- 203 (365)
Q Consensus 148 ~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~-~l~---------~v~~h~lGt~----------~~~d---- 203 (365)
+..+..+..||||+++| .|.|.-.++|||..+|- ++. .|-.++.|.. -+=|
T Consensus 350 ~~~i~~l~YSpDgq~ia-----TG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIA-----TGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccceeeEEECCCCcEEE-----eccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 55777889999999998 46666789999998872 111 2222222211 0000
Q ss_pred --ccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCC
Q 040506 204 --APIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 204 --~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~ 245 (365)
---|..|.+.-+..++..+.|..+++ +....-++++.+.+
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~A--G~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCA--GAQDSFEIFVWSVQ 466 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEe--eccceEEEEEEEee
Confidence 12455566555556777788876544 44555677777643
No 74
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=71.53 E-value=92 Score=31.42 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=49.4
Q ss_pred CCCCeeeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccch------hc--cC-CCeEEEee
Q 040506 83 STPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNE------IA--EK-YGYVHVGT 153 (365)
Q Consensus 83 ~~~p~~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~------la--~~-~~~~~~~~ 153 (365)
-++-+..|.=|=|......+...+.|.|-.+..+-|+.. +....-.++|.-. |. .. +| .+-+
T Consensus 170 n~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~-------gsDgki~iyDGktge~vg~l~~~~aHkG--sIfa 240 (603)
T KOG0318|consen 170 NTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA-------GSDGKIYIYDGKTGEKVGELEDSDAHKG--SIFA 240 (603)
T ss_pred CeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe-------cCCccEEEEcCCCccEEEEecCCCCccc--cEEE
Confidence 333344566555556677777778877644322223221 1122233344211 11 01 11 2335
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.++|||++.+|=.- + ..+++|||+.+++.+
T Consensus 241 lsWsPDs~~~~T~S---a--Dkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 241 LSWSPDSTQFLTVS---A--DKTIKIWDVSTNSLV 270 (603)
T ss_pred EEECCCCceEEEec---C--CceEEEEEeeccceE
Confidence 57999999887442 2 458999999998764
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=70.68 E-value=64 Score=29.76 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=42.5
Q ss_pred EeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCC-
Q 040506 155 RVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNS- 233 (365)
Q Consensus 155 ~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~- 233 (365)
.++.+-++|. .|+-..++++||++||+ +++.++.|++.. .+..+.+|.++++..-.
T Consensus 59 Did~~s~~li-----TGSAD~t~kLWDv~tGk---~la~~k~~~~Vk---------------~~~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 59 DIDWDSKHLI-----TGSADQTAKLWDVETGK---QLATWKTNSPVK---------------RVDFSFGGNLILASTDKQ 115 (327)
T ss_pred EecCCcceee-----eccccceeEEEEcCCCc---EEEEeecCCeeE---------------EEeeccCCcEEEEEehhh
Confidence 4556666553 47778899999999998 466666665421 13346667666655444
Q ss_pred -CcceEEEEEe
Q 040506 234 -RASSEEGLCD 243 (365)
Q Consensus 234 -~~tsev~~~d 243 (365)
+.++.|.+.+
T Consensus 116 mg~~~~v~~fd 126 (327)
T KOG0643|consen 116 MGYTCFVSVFD 126 (327)
T ss_pred cCcceEEEEEE
Confidence 2346777776
No 76
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=69.28 E-value=14 Score=35.87 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=42.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEE-EEEcCCCcEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVD-ITSTKDGKFITV 229 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~-~~~s~d~~~l~i 229 (365)
+-.+.+||+|-.|| .|+...+++||||+-... +|.-+-+.-.|+ +..++++.+.++
T Consensus 348 I~~V~fsPNGy~lA-----Tgs~Dnt~kVWDLR~r~~------------------ly~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLA-----TGSSDNTCKVWDLRMRSE------------------LYTIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred eeeEeECCCceEEe-----ecCCCCcEEEeeeccccc------------------ceecccccchhhheEecccCCeEEE
Confidence 34567999987776 456667999999976542 333332222222 445666666666
Q ss_pred EeCCCcceEEEEE
Q 040506 230 NSNSRASSEEGLC 242 (365)
Q Consensus 230 ~~~~~~tsev~~~ 242 (365)
+++-..+-.+|.-
T Consensus 405 TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 405 TASYDNTVKIWST 417 (459)
T ss_pred EcccCcceeeecC
Confidence 6666656666643
No 77
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=68.81 E-value=18 Score=34.55 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=24.4
Q ss_pred EeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 155 RVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 155 ~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.+.||||+++-+.+ ..+|++||++||+.+
T Consensus 197 ~f~pdGKr~~tgy~-----dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 197 EFIPDGKRILTGYD-----DGTIIVWNPKTGQPL 225 (399)
T ss_pred cccCCCceEEEEec-----CceEEEEecCCCcee
Confidence 57899999998877 448999999999863
No 78
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=66.41 E-value=30 Score=34.47 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=50.8
Q ss_pred eEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC-cccC----------------------------eEEEEECCC
Q 040506 148 YVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ-CIVP----------------------------RVLCTKLGS 198 (365)
Q Consensus 148 ~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg-~~l~----------------------------~v~~h~lGt 198 (365)
...+-.+++||||++++ .|++..+|+|||++.+ ..+. .|+.|.+.+
T Consensus 203 ~~~v~~~~fs~d~~~l~-----s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLL-----SGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred ccceeeeEECCCCcEEE-----EecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 34566789999999443 3677889999999443 3322 466666655
Q ss_pred CCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeC
Q 040506 199 DSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDR 244 (365)
Q Consensus 199 ~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~ 244 (365)
.. -..++..-.. .-..+..++|+++|+..+. ...+.+.|.
T Consensus 278 ~~--~~~~l~~hs~-~is~~~f~~d~~~l~s~s~---d~~i~vwd~ 317 (456)
T KOG0266|consen 278 GE--CVRKLKGHSD-GISGLAFSPDGNLLVSASY---DGTIRVWDL 317 (456)
T ss_pred Ce--EEEeeeccCC-ceEEEEECCCCCEEEEcCC---CccEEEEEC
Confidence 21 1223333222 2344677889988865533 334455553
No 79
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=66.04 E-value=26 Score=34.48 Aligned_cols=35 Identities=31% Similarity=0.259 Sum_probs=25.8
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
.+-.+++|+||+|||.+ |-+ ..+.|||..|++.+.
T Consensus 204 eil~~avS~Dgkylatg----g~d-~~v~Iw~~~t~ehv~ 238 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATG----GRD-RHVQIWDCDTLEHVK 238 (479)
T ss_pred eeEEEEEcCCCcEEEec----CCC-ceEEEecCcccchhh
Confidence 34457899999999964 333 357899999987654
No 80
>PTZ00421 coronin; Provisional
Probab=64.15 E-value=74 Score=32.20 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=24.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..++++|||++||.+- ..-+|+|+|+.+|+.+
T Consensus 171 V~sla~spdG~lLatgs-----~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTS-----KDKKLNIIDPRDGTIV 203 (493)
T ss_pred eEEEEEECCCCEEEEec-----CCCEEEEEECCCCcEE
Confidence 45677899999887542 2347999999998754
No 81
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=63.93 E-value=43 Score=33.40 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=25.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
+...+++|+|++++- |+..-+|+|||+++|+.+.
T Consensus 249 v~~~~f~p~g~~i~S-----gs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 249 VTSVAFSPDGNLLVS-----GSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred eEEEEecCCCCEEEE-----ecCCCcEEEEeccCCeEEE
Confidence 466789999965553 3344589999999987654
No 82
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=62.65 E-value=73 Score=33.58 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=37.4
Q ss_pred CCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCCCCCccEEeeCCCCeEEEEEEc
Q 040506 170 SGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDSTDDAPIFTEGDSGFCVDITST 221 (365)
Q Consensus 170 ~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s 221 (365)
|+-|.+.|+||++.||+.++ .|.+|.+=.....-+ -++-. .--+.+..+
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE-tl~i~--sdvl~vsfr 529 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE-TLEIR--SDVLAVSFR 529 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceee-eEeec--cceeEEEEc
Confidence 34589999999999999886 566665533211111 11111 123556778
Q ss_pred CCCcEEEEEeCC
Q 040506 222 KDGKFITVNSNS 233 (365)
Q Consensus 222 ~d~~~l~i~~~~ 233 (365)
|||+-|.+..-.
T Consensus 530 PdG~elaVaTld 541 (893)
T KOG0291|consen 530 PDGKELAVATLD 541 (893)
T ss_pred CCCCeEEEEEec
Confidence 898887665544
No 83
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=62.61 E-value=1.1e+02 Score=29.13 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=29.7
Q ss_pred chhccC-CCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 140 NEIAEK-YGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 140 n~la~~-~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
..|.++ .|..+.+.+.+|||||+| |+.+ .|-+.-.++-.|-.+|+
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dGrFL-YasN-Rg~dsI~~f~V~~~~g~ 279 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDGRFL-YASN-RGHDSIAVFSVDPDGGK 279 (346)
T ss_pred ccCccccCCCCceeEEEECCCCCEE-EEec-CCCCeEEEEEEcCCCCE
Confidence 344444 234567788999999965 5545 67776666666666665
No 84
>PTZ00420 coronin; Provisional
Probab=62.53 E-value=58 Score=33.60 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=25.7
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+..++++|+++.++.+.+.+ .+|+|||+.+++.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~D----gtIrIWDl~tg~~ 160 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFD----SFVNIWDIENEKR 160 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCC----CeEEEEECCCCcE
Confidence 356778999998877664433 3799999998864
No 85
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=60.08 E-value=10 Score=40.41 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=32.2
Q ss_pred eccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 137 LDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 137 lD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
.|+..+++ ||..+.. +||||+-+|++.+.|---.+.|+|.+...
T Consensus 228 ~d~a~~~~--g~~~l~~--lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~ 271 (1283)
T KOG1916|consen 228 TDMAFFAE--GVLKLAS--LSPDGTVFAWAISDGSVGFYQIYITGKIV 271 (1283)
T ss_pred ccHHHHhh--chhhhee--eCCCCcEEEEeecCCccceeeeeeecccc
Confidence 45555554 4555553 99999999999997666777899988643
No 86
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=59.57 E-value=85 Score=34.00 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=37.1
Q ss_pred EEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccE-EeeCCCCeEEEEEEcCCCcEEEE-EeCCC--cce
Q 040506 162 FLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPI-FTEGDSGFCVDITSTKDGKFITV-NSNSR--ASS 237 (365)
Q Consensus 162 ~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lv-f~e~d~~~~~~~~~s~d~~~l~i-~~~~~--~ts 237 (365)
+|||..+.+| .|.+.|...+.. +.| .+...+- ++...|+||++|.. ++..+ ..+
T Consensus 320 kiAfv~~~~~----~L~~~D~dG~n~----------------~~ve~~~~~~i--~sP~~SPDG~~vAY~ts~e~~~g~s 377 (912)
T TIGR02171 320 KLAFRNDVTG----NLAYIDYTKGAS----------------RAVEIEDTISV--YHPDISPDGKKVAFCTGIEGLPGKS 377 (912)
T ss_pred eEEEEEcCCC----eEEEEecCCCCc----------------eEEEecCCCce--ecCcCCCCCCEEEEEEeecCCCCCc
Confidence 5667666555 666667644322 223 3322222 23457999999988 55555 358
Q ss_pred EEEEEeCC
Q 040506 238 EEGLCDRC 245 (365)
Q Consensus 238 ev~~~d~~ 245 (365)
.||+.+..
T Consensus 378 ~vYv~~L~ 385 (912)
T TIGR02171 378 SVYVRNLN 385 (912)
T ss_pred eEEEEehh
Confidence 89999854
No 87
>PRK02888 nitrous-oxide reductase; Validated
Probab=59.11 E-value=1.1e+02 Score=31.99 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=17.8
Q ss_pred EEEcCCCcEEEEEeCCCcceEEEEEe
Q 040506 218 ITSTKDGKFITVNSNSRASSEEGLCD 243 (365)
Q Consensus 218 ~~~s~d~~~l~i~~~~~~tsev~~~d 243 (365)
+..|+||+|++++ .+.++.+-++|
T Consensus 326 V~vSPDGkylyVa--nklS~tVSVID 349 (635)
T PRK02888 326 VNTSPDGKYFIAN--GKLSPTVTVID 349 (635)
T ss_pred eEECCCCCEEEEe--CCCCCcEEEEE
Confidence 5679999999875 44556677777
No 88
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=58.66 E-value=24 Score=22.77 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=21.2
Q ss_pred eEEeCCC-C--CEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 153 TCRVSPD-H--NFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 153 ~~~~Spd-g--~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
.+++||+ + .+||++++. ..++|.|+.++
T Consensus 5 ~~kFsP~~~~~DLL~~~E~~-----g~vhi~D~R~~ 35 (43)
T PF10313_consen 5 CCKFSPEPGGNDLLAWAEHQ-----GRVHIVDTRSN 35 (43)
T ss_pred EEEeCCCCCcccEEEEEccC-----CeEEEEEcccC
Confidence 4678874 4 599999883 36999999864
No 89
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=56.38 E-value=2e+02 Score=28.00 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=35.5
Q ss_pred EEeccchhcc-----CCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 135 ILLDWNEIAE-----KYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 135 vllD~n~la~-----~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
.|.|+++.-. +|. .++--+++||||+.||= |+-.-+|+++|.+||+.+.
T Consensus 140 R~WD~~TeTp~~t~KgH~-~WVlcvawsPDgk~iAS-----G~~dg~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 140 RLWDLDTETPLFTCKGHK-NWVLCVAWSPDGKKIAS-----GSKDGSIRLWDPKTGQQIG 193 (480)
T ss_pred EeeccCCCCcceeecCCc-cEEEEEEECCCcchhhc-----cccCCeEEEecCCCCCccc
Confidence 4688887652 322 34445789999999984 5556689999999997653
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=56.34 E-value=1e+02 Score=30.98 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=28.4
Q ss_pred EEeeEEeCCC-CCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 150 HVGTCRVSPD-HNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 150 ~~~~~~~Spd-g~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
.+.++.++|= ...||.+ +|+-...|+++|+.+|+.+.
T Consensus 345 AVKA~awcP~q~~lLAsG---GGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 345 AVKALAWCPWQSGLLATG---GGSADRCIKFWNTNTGARID 382 (484)
T ss_pred eeeEeeeCCCccCceEEc---CCCcccEEEEEEcCCCcEec
Confidence 4566677764 4566654 88999999999999998765
No 91
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=56.10 E-value=47 Score=32.42 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=27.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
+..+++|.||++++..+... +++.||++....+.
T Consensus 398 its~~iS~d~k~~LvnL~~q-----ei~LWDl~e~~lv~ 431 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQ-----EIHLWDLEENKLVR 431 (519)
T ss_pred eeEEEEcCCCcEEEEEcccC-----eeEEeecchhhHHH
Confidence 44678999999999999855 49999999665443
No 92
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=54.54 E-value=1.2e+02 Score=27.63 Aligned_cols=36 Identities=28% Similarity=0.598 Sum_probs=25.6
Q ss_pred EEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCCeE
Q 040506 134 EILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQ 174 (365)
Q Consensus 134 evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~e~ 174 (365)
.+-+|...+. + .+..+.+||||.++|+.+..+|...
T Consensus 102 ~~~v~~~~~~---~--~I~~l~vSpDG~RvA~v~~~~~~~~ 137 (253)
T PF10647_consen 102 PVEVDWPGLR---G--RITALRVSPDGTRVAVVVEDGGGGR 137 (253)
T ss_pred eEEecccccC---C--ceEEEEECCCCcEEEEEEecCCCCe
Confidence 4456544332 2 6778999999999999997666544
No 93
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=53.46 E-value=66 Score=30.87 Aligned_cols=75 Identities=20% Similarity=0.130 Sum_probs=46.1
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCCC
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDST 201 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~~ 201 (365)
++....+|.||.+||= |+=...++|+++.||...- .||.|+++..
T Consensus 108 SVt~~~FshdgtlLAT-----GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-- 180 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLAT-----GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-- 180 (399)
T ss_pred ceEEEEEccCceEEEe-----cCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--
Confidence 4555679999999884 4444468888888875321 5777777653
Q ss_pred CCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 202 DDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 202 ~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
...-||.....+-.. -..++||+-++-...
T Consensus 181 ~~~kv~~Gh~~~ct~-G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 181 ALCKVMSGHNSPCTC-GEFIPDGKRILTGYD 210 (399)
T ss_pred ceeeEecCCCCCccc-ccccCCCceEEEEec
Confidence 223455554433332 245788887765443
No 94
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=53.16 E-value=1.7e+02 Score=29.82 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=44.5
Q ss_pred CeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC-------eEEEEECCCCCCCCccEEeeCCCCeEEEEE
Q 040506 147 GYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP-------RVLCTKLGSDSTDDAPIFTEGDSGFCVDIT 219 (365)
Q Consensus 147 ~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~-------~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~ 219 (365)
.+.+-..+.++|+|+ |.+..|.+++... |. --...|.... .++.. +....+-..++..+...-..++.
T Consensus 434 ~f~sPDNL~~d~~G~-LwI~eD~~~~~~~-l~-g~t~~G~~~~~~~~~G~~~~~~--~~~~g~~~rf~~~P~gaE~tG~~ 508 (524)
T PF05787_consen 434 GFASPDNLAFDPDGN-LWIQEDGGGSNNN-LP-GVTPDGEVYDFARNDGNNVWAY--DPDTGELKRFLVGPNGAEITGPC 508 (524)
T ss_pred CcCCCCceEECCCCC-EEEEeCCCCCCcc-cc-cccccCceeeeeecccceeeec--cccccceeeeccCCCCcccccce
Confidence 455667888999998 5667786665432 10 0111121100 01221 11112223444555555567788
Q ss_pred EcCCCcEEEEEeC
Q 040506 220 STKDGKFITVNSN 232 (365)
Q Consensus 220 ~s~d~~~l~i~~~ 232 (365)
.|+|++.|||++-
T Consensus 509 fspDg~tlFvniQ 521 (524)
T PF05787_consen 509 FSPDGRTLFVNIQ 521 (524)
T ss_pred ECCCCCEEEEEEe
Confidence 8999999999864
No 95
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=52.89 E-value=12 Score=40.14 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=24.3
Q ss_pred EEeCCCCCEEEEEEcCCC-CeEEEEEEEECCCC
Q 040506 154 CRVSPDHNFLAYTIDTSG-DEQFMLQIKDLRNQ 185 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G-~e~~~l~v~Dl~tg 185 (365)
-.+||||++|||.++..| +-...|+|.||.|.
T Consensus 355 P~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 355 PDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred CcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 358999999999767666 22445999999874
No 96
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=51.54 E-value=74 Score=31.57 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=25.7
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
-+...++||||+|+|++-- +| .+++++..+|+.
T Consensus 454 pVysvafS~~g~ylAsGs~-dg----~V~iws~~~~~l 486 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSL-DG----CVHIWSTKTGKL 486 (524)
T ss_pred ceEEEEecCCCcEEEecCC-CC----eeEeccccchhe
Confidence 3556789999999998733 33 489999999864
No 97
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=51.45 E-value=78 Score=31.81 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=22.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+-...++|||+.|.+ |.|..++-||||++-
T Consensus 468 iRSckL~pdgrtLiv-----GGeastlsiWDLAap 497 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIV-----GGEASTLSIWDLAAP 497 (705)
T ss_pred eeeeEecCCCceEEe-----ccccceeeeeeccCC
Confidence 345678888887765 556888888888764
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=50.13 E-value=62 Score=33.95 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=34.2
Q ss_pred eEEEeccchhccCC----CeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 133 EEILLDWNEIAEKY----GYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 133 ~evllD~n~la~~~----~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
--||||++.-...+ .-..+...++|++|||+|-+.... .-.++||+|++...+
T Consensus 59 vVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~---~pa~kVw~la~h~vV 115 (1080)
T KOG1408|consen 59 VVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGR---TPASKVWSLAFHGVV 115 (1080)
T ss_pred EEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCC---Cccceeeeeccccch
Confidence 35677776543211 011455678999999999887622 235899999986543
No 99
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=50.10 E-value=88 Score=27.01 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=25.5
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.+..+.++|++++++++-. . ..++++|+.+++.+
T Consensus 179 ~i~~~~~~~~~~~l~~~~~-~----~~i~i~d~~~~~~~ 212 (289)
T cd00200 179 EVNSVAFSPDGEKLLSSSS-D----GTIKLWDLSTGKCL 212 (289)
T ss_pred ccceEEECCCcCEEEEecC-C----CcEEEEECCCCcee
Confidence 3556789999988888755 2 35899999887654
No 100
>PTZ00420 coronin; Provisional
Probab=50.09 E-value=97 Score=32.00 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=24.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..++++|||++|+.+-. .-.|+|||+.+|+.+
T Consensus 170 V~SlswspdG~lLat~s~-----D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCV-----GKHMHIIDPRKQEIA 202 (568)
T ss_pred EEEEEECCCCCEEEEEec-----CCEEEEEECCCCcEE
Confidence 456779999999876432 236999999999764
No 101
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=49.68 E-value=2.1e+02 Score=26.62 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=16.0
Q ss_pred EEEcCCCcEEEEEeCCCcceEEEEEeC
Q 040506 218 ITSTKDGKFITVNSNSRASSEEGLCDR 244 (365)
Q Consensus 218 ~~~s~d~~~l~i~~~~~~tsev~~~d~ 244 (365)
+..++||+++++.... ...|++++.
T Consensus 131 ~~~~p~g~~l~v~~~~--~~~v~v~d~ 155 (330)
T PRK11028 131 ANIDPDNRTLWVPCLK--EDRIRLFTL 155 (330)
T ss_pred eEeCCCCCEEEEeeCC--CCEEEEEEE
Confidence 4568999998875433 245666653
No 102
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=49.62 E-value=19 Score=33.90 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=24.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+.-..+||||+||+- |+-..-|-||+-.||+.-
T Consensus 216 ~EcA~FSPDgqyLvs-----gSvDGFiEVWny~~GKlr 248 (508)
T KOG0275|consen 216 VECARFSPDGQYLVS-----GSVDGFIEVWNYTTGKLR 248 (508)
T ss_pred hhheeeCCCCceEee-----ccccceeeeehhccchhh
Confidence 444579999999874 444457889999998753
No 103
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=47.67 E-value=1.5e+02 Score=30.90 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=41.5
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCC--eEEEEEEcCCCcEEEE
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSG--FCVDITSTKDGKFITV 229 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~--~~~~~~~s~d~~~l~i 229 (365)
-++++||||+++|-.-- +| +|+|++..+++. .|||.+-+- --.-+...-||+++++
T Consensus 724 f~~AWSpdGr~~AtVcK-Dg----~~rVy~Prs~e~-----------------pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 724 FGIAWSPDGRRIATVCK-DG----TLRVYEPRSREQ-----------------PVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred eEEEECCCCcceeeeec-Cc----eEEEeCCCCCCC-----------------ccccCCCCccCcceeEEEEecCcEEEE
Confidence 35789999999885433 33 688888877753 455543321 1111223557888877
Q ss_pred EeCCCcc-eEEEEEe
Q 040506 230 NSNSRAS-SEEGLCD 243 (365)
Q Consensus 230 ~~~~~~t-sev~~~d 243 (365)
..-.+.+ ..|.+.+
T Consensus 782 ~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYD 796 (1012)
T ss_pred ecccccchhhhhhhh
Confidence 6555443 3455555
No 104
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=46.38 E-value=37 Score=36.71 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=51.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCC--
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDS-- 200 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~-- 200 (365)
+-..++|||++++|= ++=..++.||+..|.+.+. .|..|+.++=+
T Consensus 132 V~Dv~Wsp~~~~lvS-----~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~ 206 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVS-----VSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE 206 (942)
T ss_pred cceeccCCCccEEEE-----ecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee
Confidence 456789999988763 2223468888888875443 23333322100
Q ss_pred CCCccEEee-CCCCeEEEEEEcCCCcEEEEE-eCCCcceEEEEEeCCC
Q 040506 201 TDDAPIFTE-GDSGFCVDITSTKDGKFITVN-SNSRASSEEGLCDRCD 246 (365)
Q Consensus 201 ~~d~lvf~e-~d~~~~~~~~~s~d~~~l~i~-~~~~~tsev~~~d~~~ 246 (365)
..-.--|++ +-..|+.-+..||||+||... +-++..+-+-+++|+.
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 000112332 233467777889999998543 2233346677777654
No 105
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=45.93 E-value=1.4e+02 Score=30.16 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=43.8
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
.....+++||++.+|++ |.|. .++|+.|..++..+ +.+-.+--.+ -..++.|+|+.||..
T Consensus 445 ~~s~vAv~~~~~~vaVG----G~Dg-kvhvysl~g~~l~e--------------e~~~~~h~a~-iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 445 ESSAVAVSPDGSEVAVG----GQDG-KVHVYSLSGDELKE--------------EAKLLEHRAA-ITDVAYSPDGAYLAA 504 (603)
T ss_pred ccceEEEcCCCCEEEEe----cccc-eEEEEEecCCcccc--------------eeeeecccCC-ceEEEECCCCcEEEE
Confidence 34456899999999985 3333 38888887665421 1222221111 234778999999865
Q ss_pred EeCCCcceEEEEEeCCC
Q 040506 230 NSNSRASSEEGLCDRCD 246 (365)
Q Consensus 230 ~~~~~~tsev~~~d~~~ 246 (365)
.-.+ .++-+.|+..
T Consensus 505 ~Da~---rkvv~yd~~s 518 (603)
T KOG0318|consen 505 GDAS---RKVVLYDVAS 518 (603)
T ss_pred eccC---CcEEEEEccc
Confidence 4332 4566666543
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=45.88 E-value=2.4e+02 Score=27.91 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=10.8
Q ss_pred CCeEEEEEEEECCCCcc
Q 040506 171 GDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 171 G~e~~~l~v~Dl~tg~~ 187 (365)
|.....++|||+.++..
T Consensus 365 gt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTN 381 (506)
T ss_pred cCCCceEEEEEcCCccc
Confidence 45555677777776653
No 107
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=45.71 E-value=3.7e+02 Score=27.89 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=30.5
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGS 198 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt 198 (365)
+-.+++.|.|.+|| .|++..+++||.++||. .|+...++.
T Consensus 403 Vr~iSvdp~G~wla-----sGsdDGtvriWEi~TgR---cvr~~~~d~ 442 (733)
T KOG0650|consen 403 VRSISVDPSGEWLA-----SGSDDGTVRIWEIATGR---CVRTVQFDS 442 (733)
T ss_pred EEEEEecCCcceee-----ecCCCCcEEEEEeecce---EEEEEeecc
Confidence 44567888888887 47778899999999997 466666654
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=45.62 E-value=1.9e+02 Score=28.64 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=9.8
Q ss_pred CCeEEEEEEEECCCCcc
Q 040506 171 GDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 171 G~e~~~l~v~Dl~tg~~ 187 (365)
|++.-.|..|++.+.+.
T Consensus 344 GSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKP 360 (479)
T ss_pred ccCCceEEEeeecccCc
Confidence 55555566666655554
No 109
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=45.16 E-value=1.3e+02 Score=27.73 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=22.3
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
...+||+|+++|++-- .-.|.++|.++.+.+.
T Consensus 111 ~i~wsp~g~~~~~~~k-----dD~it~id~r~~~~~~ 142 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGNK-----DDRITFIDARTYKIVN 142 (313)
T ss_pred EEEEcCCCCEEEEecC-----cccEEEEEecccceee
Confidence 3579999999998622 2247777888766543
No 110
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=44.86 E-value=1e+02 Score=29.23 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=11.8
Q ss_pred eEEeCCCCCEEEEEE
Q 040506 153 TCRVSPDHNFLAYTI 167 (365)
Q Consensus 153 ~~~~Spdg~~la~~~ 167 (365)
..++||||+++|.+-
T Consensus 233 ~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSG 247 (420)
T ss_pred ceeeCCCCcEEEEec
Confidence 357999999998753
No 111
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=44.85 E-value=1.4e+02 Score=25.71 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=24.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.++|++++++.+-. ...++++|+.+++.
T Consensus 12 i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~ 43 (289)
T cd00200 12 VTCVAFSPDGKLLATGSG-----DGTIKVWDLETGEL 43 (289)
T ss_pred EEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCCc
Confidence 456689999999988754 33789999988764
No 112
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.80 E-value=1.1e+02 Score=32.29 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=25.3
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.+.+++++|||++..++.- .| .|+++++..-++.
T Consensus 453 lITAvcy~PdGk~avIGt~-~G----~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 453 LITAVCYSPDGKGAVIGTF-NG----YCRFYDTEGLKLV 486 (712)
T ss_pred hheeEEeccCCceEEEEEe-cc----EEEEEEccCCeEE
Confidence 4677899999999999865 34 5778887665543
No 113
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=44.16 E-value=2.8e+02 Score=26.15 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=47.2
Q ss_pred EeeEEeCCCCCE-EEEEEcC---CCCeE-------EEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEE-EE
Q 040506 151 VGTCRVSPDHNF-LAYTIDT---SGDEQ-------FMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCV-DI 218 (365)
Q Consensus 151 ~~~~~~Spdg~~-la~~~d~---~G~e~-------~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~-~~ 218 (365)
+.+++++|||+. ++...+. .|... ..|..+|..++.....-|.+++-...... ..+-+ ++
T Consensus 149 ~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~--------~~~~isd~ 220 (326)
T PF13449_consen 149 FEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAP--------GDNGISDI 220 (326)
T ss_pred eEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCcccccc--------CCCCceeE
Confidence 556789999994 4444443 22222 66777888773321233444443221111 12222 35
Q ss_pred EEcCCCcEEEEEeCC----CcceEEEEEeCC
Q 040506 219 TSTKDGKFITVNSNS----RASSEEGLCDRC 245 (365)
Q Consensus 219 ~~s~d~~~l~i~~~~----~~tsev~~~d~~ 245 (365)
..-+|+++|+|.... +....+|.++..
T Consensus 221 ~al~d~~lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 221 AALPDGRLLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred EEECCCcEEEEEccCCCCccceEEEEEEEcc
Confidence 567888888888763 224667776643
No 114
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=43.84 E-value=1.4e+02 Score=29.63 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=24.8
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
-+...+++|+|+-.+++ ++-.--+++||++++++..
T Consensus 259 Pi~~a~f~p~G~~~i~~----s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFT----SGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred ccceeeecCCCceEEEe----cccceEEEEeecccccccc
Confidence 34556788999855554 2334568999999998643
No 115
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=43.82 E-value=86 Score=31.76 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=25.3
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.+...++||||+.++.+- .+|.++|++|++.+
T Consensus 146 ~~~sl~is~D~~~l~~as-------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS-------RQIKVLDIETKEVV 177 (541)
T ss_pred ccceEEEcCCCCEEEecc-------ceEEEEEccCceEE
Confidence 456778999999888652 36999999999865
No 116
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=43.71 E-value=32 Score=26.04 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=20.4
Q ss_pred CceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcC
Q 040506 131 GKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDT 169 (365)
Q Consensus 131 ~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~ 169 (365)
+..+||+| +-+.-.++++|+|++.+++++..
T Consensus 47 ~~~~vl~~--------~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 47 KETTVLLD--------GLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp TEEEEEEE--------EESSEEEEEE-TTSSEEEEEEGG
T ss_pred CeEEEehh--------CCCccCeEEEcCCCCEEEEEecc
Confidence 34456666 22223457899999999999874
No 117
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=43.67 E-value=25 Score=32.49 Aligned_cols=27 Identities=37% Similarity=0.541 Sum_probs=21.9
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
.++|||+..|||+-+. | +|+|+|+...
T Consensus 49 l~WSpD~tlLa~a~S~-G----~i~vfdl~g~ 75 (282)
T PF15492_consen 49 LAWSPDCTLLAYAEST-G----TIRVFDLMGS 75 (282)
T ss_pred EEECCCCcEEEEEcCC-C----eEEEEecccc
Confidence 3579999999999883 3 6999998653
No 118
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=43.34 E-value=84 Score=29.72 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=33.6
Q ss_pred EEEeccchhccC----CCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 134 EILLDWNEIAEK----YGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 134 evllD~n~la~~----~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
-|+.|..++.-. ...-.+...++|+||++|+=+- . .-.|..|||..|..+.
T Consensus 47 vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS----~-D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 47 VVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS----R-DWSIKLWDLLKGSPLK 101 (405)
T ss_pred EEEEEccccchhhhhhccccceeEEEecCCCCEeeeec----C-CceeEEEeccCCCcee
Confidence 455676665422 1123567789999999887442 2 3368899999998654
No 119
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=42.13 E-value=62 Score=29.98 Aligned_cols=88 Identities=24% Similarity=0.373 Sum_probs=58.4
Q ss_pred CCCceEEEeccchhcc---CCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCcc
Q 040506 129 GFGKEEILLDWNEIAE---KYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAP 205 (365)
Q Consensus 129 ~~~~~evllD~n~la~---~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~l 205 (365)
|++.+-.|.|.|+=.. -..+..+..+++||+-=.|+-+...+ |+|||++++..+..+..--.|....
T Consensus 211 gkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s------IkIwdl~~~~~v~~l~~d~~g~s~~---- 280 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS------IKIWDLESKAVVEELKLDGIGPSSK---- 280 (315)
T ss_pred CCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc------eEEEeccchhhhhhccccccccccc----
Confidence 3455668888875321 01344677889999977777666544 9999999998776444444443111
Q ss_pred EEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 206 IFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 206 vf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
...+..+++..|.||..||-.
T Consensus 281 ----~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 281 ----AGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred ----cCCcEEEEEEEcCCCcEEEee
Confidence 134578889999999998754
No 120
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=41.69 E-value=59 Score=19.76 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=20.0
Q ss_pred CCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCC
Q 040506 158 PDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGS 198 (365)
Q Consensus 158 pdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt 198 (365)
|||++|..+ +. |++ .|.++|+.+++. +.....|.
T Consensus 1 pd~~~lyv~-~~-~~~--~v~~id~~~~~~---~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVT-NS-GSN--TVSVIDTATNKV---IATIPVGG 34 (42)
T ss_pred CCCCEEEEE-eC-CCC--EEEEEECCCCeE---EEEEECCC
Confidence 677775544 32 333 567789988875 33344454
No 121
>PTZ00421 coronin; Provisional
Probab=41.44 E-value=3.9e+02 Score=27.02 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=22.8
Q ss_pred EEeeEEeCCCCC-EEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 150 HVGTCRVSPDHN-FLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 150 ~~~~~~~Spdg~-~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.+..+.++|++. +||-+ +...+|+|||+.+++.+
T Consensus 127 ~V~~l~f~P~~~~iLaSg-----s~DgtVrIWDl~tg~~~ 161 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASA-----GADMVVNVWDVERGKAV 161 (493)
T ss_pred cEEEEEeCcCCCCEEEEE-----eCCCEEEEEECCCCeEE
Confidence 355678899874 44432 23347999999998653
No 122
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=40.51 E-value=74 Score=30.01 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=32.7
Q ss_pred EEEeccchhccC--C----CeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 134 EILLDWNEIAEK--Y----GYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 134 evllD~n~la~~--~----~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
--|||..+-+.. + +...+-.+++.|.|.+|+++. |.-++|++|+.|-+
T Consensus 196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-----dHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-----DHPTLRLYDVNTYQ 249 (430)
T ss_pred EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-----CCCceeEEecccee
Confidence 346776554321 1 123456678899999999854 57899999999853
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=40.16 E-value=5.2e+02 Score=28.09 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=31.0
Q ss_pred CceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 131 GKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 131 ~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+.++.+|+.=++. +-..+++-+|+++|. |+|.+.|.+.++.++.
T Consensus 86 ~~~~~iL~Rftlp-------~r~~~v~g~g~~iaa-----gsdD~~vK~~~~~D~s 129 (933)
T KOG1274|consen 86 GEEDTILARFTLP-------IRDLAVSGSGKMIAA-----GSDDTAVKLLNLDDSS 129 (933)
T ss_pred CCccceeeeeecc-------ceEEEEecCCcEEEe-----ecCceeEEEEeccccc
Confidence 5566667643333 345678999999986 5667889999987664
No 124
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=40.06 E-value=3.1e+02 Score=26.36 Aligned_cols=88 Identities=17% Similarity=0.238 Sum_probs=0.0
Q ss_pred eeEEeCCCCCEEEEEEc-----CCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcE
Q 040506 152 GTCRVSPDHNFLAYTID-----TSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKF 226 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d-----~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~ 226 (365)
+.+.+||||+.+..+.. ..|.-.-.|-++|..|-+. .+-..|=.....-.+.+... ...|.||||
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~---~~EI~iP~k~R~~~~~~~~~-------~~ls~dgk~ 108 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP---TGEIEIPPKPRAQVVPYKNM-------FALSADGKF 108 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE---EEEEEETTS-B--BS--GGG-------EEE-TTSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc---cceEecCCcchheecccccc-------eEEccCCcE
Q ss_pred EEEEeCCCcceEEEEEeCCCceee
Q 040506 227 ITVNSNSRASSEEGLCDRCDQSIS 250 (365)
Q Consensus 227 l~i~~~~~~tsev~~~d~~~~~~~ 250 (365)
+++. |-.-.+.|-++|.+.+.++
T Consensus 109 ~~V~-N~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 109 LYVQ-NFTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp EEEE-EESSSEEEEEEETTTTEEE
T ss_pred EEEE-ccCCCCeEEEEECCCCcee
No 125
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=39.57 E-value=77 Score=30.17 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=22.4
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+.+||||++|+++-. +++...++-+|.+||..
T Consensus 296 ~~~~s~~g~~l~Va~~--~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQ--DSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEec--CCCeEEEEEEeCCCCcE
Confidence 4678889988887654 44456666677788865
No 126
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=37.41 E-value=2.5e+02 Score=27.99 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=47.5
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC--------eEEEEECCCCC--------CCCccEEe-----
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP--------RVLCTKLGSDS--------TDDAPIFT----- 208 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~--------~v~~h~lGt~~--------~~d~lvf~----- 208 (365)
.+..+.+=|.|..+| +.+|+. ++|||+-+|..+. .|=+.+++++. ..-+-||.
T Consensus 198 pVe~vl~lpsgs~ia---sAgGn~---vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 198 PVESVLALPSGSLIA---SAGGNS---VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred ceeeEEEcCCCCEEE---EcCCCe---EEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE
Confidence 455666778888776 447776 8999999776543 34444444421 01122333
Q ss_pred ----eCCCCeEEEEEEcCCCcEEEEEeCCCc
Q 040506 209 ----EGDSGFCVDITSTKDGKFITVNSNSRA 235 (365)
Q Consensus 209 ----e~d~~~~~~~~~s~d~~~l~i~~~~~~ 235 (365)
-.-+.=-+++..++|++.++|.-+++.
T Consensus 272 vv~s~~~~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 272 VVHSWKYPGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred EEEeeecccceeeEEecCCCceEEEecccce
Confidence 222222356777888888888776654
No 127
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.62 E-value=50 Score=29.92 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=26.2
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
+...++|+||+-.+.+.= ..+||..|-+||+.|.
T Consensus 186 it~vs~s~d~nc~La~~l-----~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSL-----DSTLRLLDKETGKLLK 219 (307)
T ss_pred ceeEEecCCCCEEEEeec-----cceeeecccchhHHHH
Confidence 456788999987665432 4589999999999885
No 128
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.53 E-value=54 Score=33.71 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=27.4
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
...++-|||+.+|+++.. | +|++.|+++|..+
T Consensus 66 ~sL~W~~DGkllaVg~kd-G----~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 66 ASLCWRPDGKLLAVGFKD-G----TIRLHDVEKGGRL 97 (665)
T ss_pred eeeeecCCCCEEEEEecC-C----eEEEEEccCCCce
Confidence 356899999999999985 4 7999999999764
No 129
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=36.19 E-value=1.6e+02 Score=28.03 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=29.2
Q ss_pred eccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 137 LDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 137 lD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
||.+.|....+ .+..+++|-||++||=.-+ .-+|++||+..
T Consensus 77 l~~~~LKgH~~--~vt~~~FsSdGK~lat~~~-----Dr~Ir~w~~~D 117 (420)
T KOG2096|consen 77 LNVSVLKGHKK--EVTDVAFSSDGKKLATISG-----DRSIRLWDVRD 117 (420)
T ss_pred hhhhhhhccCC--ceeeeEEcCCCceeEEEeC-----CceEEEEecch
Confidence 77788854322 3456789999999986644 23699999865
No 130
>COG5497 Predicted secreted protein [Function unknown]
Probab=35.98 E-value=71 Score=28.51 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.2
Q ss_pred EeCCCCCEEEEEEc---C-CCCeEEEEEEEECCCCcccC
Q 040506 155 RVSPDHNFLAYTID---T-SGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 155 ~~Spdg~~la~~~d---~-~G~e~~~l~v~Dl~tg~~l~ 189 (365)
-+||||+++|++.. . .|.-...++++|..+..++.
T Consensus 28 GFS~dG~~Faf~~yG~~dG~g~~ys~~y~vd~~~D~fv~ 66 (228)
T COG5497 28 GFSPDGRYFAFAEYGEQDGLGFPYSKIYVVDTSEDWFVS 66 (228)
T ss_pred eeccCCCEEeehhcccccCCCCceEEEEEEecccccccC
Confidence 49999999998765 2 25556679999998888775
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=35.85 E-value=2.2e+02 Score=30.71 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=26.5
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.+-...++|.|++||.+.- +| .++|||+.+|...
T Consensus 140 pVl~l~~~p~~~fLAvss~-dG----~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSC-DG----KVQIWDLQDGILS 173 (933)
T ss_pred ceeeeeEcCCCCEEEEEec-Cc----eEEEEEcccchhh
Confidence 3456789999999999855 44 5999999988643
No 132
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.62 E-value=1e+02 Score=28.85 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=36.6
Q ss_pred CceEEEeccchhcc--------CCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 131 GKEEILLDWNEIAE--------KYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 131 ~~~evllD~n~la~--------~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
+..-.+||+|.-.+ +.-|+--| ++||||++|--++..--.-+-.|-|+|...
T Consensus 90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHG--vfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHG--VFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CceEEEECCCCCcCcEEEecccCceeeccc--ccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 44568899887542 22355555 699999988777765556677899999864
No 133
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=35.53 E-value=3.4e+02 Score=24.57 Aligned_cols=32 Identities=28% Similarity=0.225 Sum_probs=21.8
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
+....+|+||+.+|+.. .+.+...|++.....
T Consensus 26 ~~s~AvS~dg~~~A~v~--~~~~~~~L~~~~~~~ 57 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVS--EGDGGRSLYVGPAGG 57 (253)
T ss_pred ccceEECCCCCeEEEEE--EcCCCCEEEEEcCCC
Confidence 44567999999998887 344455566666543
No 134
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=35.26 E-value=2.3e+02 Score=27.46 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=27.1
Q ss_pred CeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 147 GYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 147 ~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
|...+..+.+.+||-.++=+ +. | ...|.|+|+.||.-++
T Consensus 194 gh~pVtsmqwn~dgt~l~tA-S~-g--sssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTA-SF-G--SSSIMIWDPDTGQKIP 232 (445)
T ss_pred CCceeeEEEEcCCCCEEeec-cc-C--cceEEEEcCCCCCccc
Confidence 44567778899998876543 22 3 3358899999987654
No 135
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=33.96 E-value=43 Score=32.63 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=25.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+....+|||++|+|-+-. ...++||++.||+.
T Consensus 390 wtrvvfSpd~~YvaAGS~-----dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSA-----DGSVYIWSVFTGKL 421 (459)
T ss_pred cceeEECCCCceeeeccC-----CCcEEEEEccCceE
Confidence 456689999999986533 33699999999975
No 136
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=33.41 E-value=57 Score=34.29 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=27.6
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEEC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKL 196 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~l 196 (365)
..++||||++||+++= ..+++|+=+.|-++.-.+|=|+|
T Consensus 513 ~v~~Spdgk~LaVsLL-----dnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLL-----DNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred EEEEcCCCcEEEEEec-----cCeEEEEEecceeeeeeeccccc
Confidence 4679999999999987 34677777777766434444443
No 137
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=32.75 E-value=1.5e+02 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=20.4
Q ss_pred eEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECC
Q 040506 148 YVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR 183 (365)
Q Consensus 148 ~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~ 183 (365)
.+.-.++++||||+.|-++-+ ... .|+-+++.
T Consensus 162 ~~~~NGla~SpDg~tly~aDT-~~~---~i~r~~~d 193 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADT-PAN---RIHRYDLD 193 (307)
T ss_pred EEecCceEECCCCCEEEEEeC-CCC---eEEEEecC
Confidence 555567899999996666654 332 35555553
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=32.63 E-value=6.2e+02 Score=26.72 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=32.3
Q ss_pred eEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 148 YVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 148 ~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
++.+...++||+|+++|=+--..--|...|++++.++=
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW 562 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch
Confidence 35666788999999999998888889999999997663
No 139
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=31.71 E-value=3.1e+02 Score=25.52 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=42.6
Q ss_pred EEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEE
Q 040506 149 VHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFIT 228 (365)
Q Consensus 149 ~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~ 228 (365)
-++-.+++||.|++||-+-- ..+..|+.-..|+| +-.-+.|..+... =.+..|++|+||.
T Consensus 62 rsVRsvAwsp~g~~La~aSF-----D~t~~Iw~k~~~ef--------------ecv~~lEGHEnEV-K~Vaws~sG~~LA 121 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASF-----DATVVIWKKEDGEF--------------ECVATLEGHENEV-KCVAWSASGNYLA 121 (312)
T ss_pred heeeeeeecCCCcEEEEeec-----cceEEEeecCCCce--------------eEEeeeeccccce-eEEEEcCCCCEEE
Confidence 35667789999999987532 34566666556655 1122344433322 2366789999886
Q ss_pred EEeCCCcceEEEEEe
Q 040506 229 VNSNSRASSEEGLCD 243 (365)
Q Consensus 229 i~~~~~~tsev~~~d 243 (365)
-.+..+ .||+-.
T Consensus 122 TCSRDK---SVWiWe 133 (312)
T KOG0645|consen 122 TCSRDK---SVWIWE 133 (312)
T ss_pred EeeCCC---eEEEEE
Confidence 554333 456654
No 140
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=31.32 E-value=3.1e+02 Score=27.44 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=49.2
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC-----------eEEEEEC-----CCCCCCCccEEeeC----
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP-----------RVLCTKL-----GSDSTDDAPIFTEG---- 210 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~-----------~v~~h~l-----Gt~~~~d~lvf~e~---- 210 (365)
+..+.+-++|++++-+.|.. .++||+..++..+. .+-+|-- .+....-..+|+..
T Consensus 345 i~~i~F~~~g~rFissSDdk-----s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDK-----SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred eeeeEEccCCceEeeeccCc-----cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 44567889999988776644 89999988775543 2222221 12222233444421
Q ss_pred -----------CCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEe
Q 040506 211 -----------DSGFCVDITSTKDGKFITVNSNSRASSEEGLCD 243 (365)
Q Consensus 211 -----------d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d 243 (365)
-+.|.+.+..|+||+||+-..+. ..+++.|
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd---G~v~~wd 460 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD---GKVNFWD 460 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCeEEeecCC---ccEEEee
Confidence 12466777789999988532222 3456555
No 141
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=30.82 E-value=1.6e+02 Score=19.26 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+..+++||...++|++.. .| .|.++.+ +++
T Consensus 14 v~~~~w~P~mdLiA~~t~-~g----~v~v~Rl-~~q 43 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTE-DG----EVLVYRL-NWQ 43 (47)
T ss_pred EEEEEECCCCCEEEEEEC-CC----eEEEEEC-CCc
Confidence 446789999999999977 33 3677776 444
No 142
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.75 E-value=94 Score=29.28 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=28.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+|.++++++|+++|.+-=.+| .+.+||.+||+++
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg----~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGG----RVAVWDAATGRLL 252 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCC----EEEEEECCCCCEe
Confidence 678899999999999955555 4778899999874
No 143
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.49 E-value=3.6e+02 Score=26.05 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=22.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+-.+.++.||..+| .++-..++++|=++|+
T Consensus 238 vr~v~v~~DGti~A-----s~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 238 VRMVRVNQDGTIIA-----SCSNDQTLRVWVVATK 267 (406)
T ss_pred EEEEEecCCeeEEE-----ecCCCceEEEEEeccc
Confidence 33457888888776 3444568999999998
No 144
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.68 E-value=63 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.565 Sum_probs=35.3
Q ss_pred cccCCCCh-----hHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCC
Q 040506 36 WMKNTNDP-----DFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPS 80 (365)
Q Consensus 36 WLed~~~~-----~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~ 80 (365)
.+++-.+| +..+=+.++|.++...+...+.+++.|.++|.+-+++
T Consensus 71 yID~GrNPDiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPe 120 (128)
T PF09748_consen 71 YIDDGRNPDIYTREFVELVRRENQYVKGKMEAFKSFRDVLAEELASAFPE 120 (128)
T ss_pred HHhCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 34444455 4566678999999999999999999999999876653
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=29.37 E-value=74 Score=32.93 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=25.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.+||||+|+|..-..+ .|+|+++++++.
T Consensus 478 I~~l~~SsdG~yiaa~~t~g-----~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 478 ISRLVVSSDGNYIAAISTRG-----QIFVYNLETLES 509 (691)
T ss_pred ceeEEEcCCCCEEEEEeccc-----eEEEEEccccee
Confidence 45667999999999986533 599999999874
No 146
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.28 E-value=2.1e+02 Score=28.96 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=24.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+....++++|++||++... | .+.|+|+++.+-+
T Consensus 220 vtSv~ws~~G~~LavG~~~-g----~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSD-G----TVQIWDVKEQKKT 252 (484)
T ss_pred eEEEEECCCCCEEEEeecC-C----eEEEEehhhcccc
Confidence 4455799999999998773 2 6888998776544
No 147
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=29.17 E-value=1.5e+02 Score=27.39 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=33.4
Q ss_pred EeCCCCCceEeEEEE-eCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 278 IILPGEDISLQDMDI-FDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 278 vi~~~~~~~l~~v~~-~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
-.|+++...-+++.. -++.|+.+.-..|.|+|+.+++.++.
T Consensus 38 ~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~ 79 (264)
T PF05096_consen 38 TYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK 79 (264)
T ss_dssp EEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS
T ss_pred ECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc
Confidence 468888888999998 67899999999999999999998764
No 148
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=29.00 E-value=3.3e+02 Score=26.46 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=23.1
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
.+..+.+++ .-.+|+.+. ..+|++|||+||....
T Consensus 262 ~Vs~V~w~d--~~v~yS~Sw----DHTIk~WDletg~~~~ 295 (423)
T KOG0313|consen 262 PVSSVVWSD--ATVIYSVSW----DHTIKVWDLETGGLKS 295 (423)
T ss_pred ceeeEEEcC--CCceEeecc----cceEEEEEeeccccee
Confidence 344555666 456777653 3589999999997654
No 149
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=28.94 E-value=88 Score=18.46 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=17.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKD 181 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~D 181 (365)
+..++++|++++||-+-. + ..|+++|
T Consensus 14 i~~i~~~~~~~~~~s~~~-D----~~i~vwd 39 (39)
T PF00400_consen 14 INSIAWSPDGNFLASGSS-D----GTIRVWD 39 (39)
T ss_dssp EEEEEEETTSSEEEEEET-T----SEEEEEE
T ss_pred EEEEEEecccccceeeCC-C----CEEEEEC
Confidence 445678899888876643 2 2566665
No 150
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=28.11 E-value=63 Score=24.69 Aligned_cols=18 Identities=33% Similarity=0.724 Sum_probs=14.1
Q ss_pred CeEEEeeEEeCCCCCEEEEE
Q 040506 147 GYVHVGTCRVSPDHNFLAYT 166 (365)
Q Consensus 147 ~~~~~~~~~~Spdg~~la~~ 166 (365)
|-+.-| .+|||||+++|-
T Consensus 13 Gv~AAG--efs~DGkLv~Yk 30 (109)
T COG4831 13 GVMAAG--EFSPDGKLVEYK 30 (109)
T ss_pred ceeEec--eeCCCCceEEee
Confidence 555555 599999999996
No 151
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=27.70 E-value=1.1e+02 Score=29.47 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=22.0
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.+.+-|-++++| .|+-.-+|.|+||+||+..
T Consensus 156 ~vavdP~n~wf~-----tgs~DrtikIwDlatg~Lk 186 (460)
T KOG0285|consen 156 SVAVDPGNEWFA-----TGSADRTIKIWDLATGQLK 186 (460)
T ss_pred EEeeCCCceeEE-----ecCCCceeEEEEcccCeEE
Confidence 345667777665 3455568999999999763
No 152
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=27.02 E-value=3.1e+02 Score=26.28 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=38.9
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
-+...++|||||.++-.... ...|.|+.|-|.+- |.. .-+... .-++..++||+|..|
T Consensus 93 gls~~~WSPdgrhiL~tseF----~lriTVWSL~t~~~----~~~-------------~~pK~~-~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEF----DLRITVWSLNTQKG----YLL-------------PHPKTN-VKGYAFHPDGQFCAI 150 (447)
T ss_pred cceeeeECCCcceEeeeecc----eeEEEEEEecccee----EEe-------------cccccC-ceeEEECCCCceeee
Confidence 45677899999988876443 45688888877542 111 111111 123566888888877
Q ss_pred EeCCCc
Q 040506 230 NSNSRA 235 (365)
Q Consensus 230 ~~~~~~ 235 (365)
.+....
T Consensus 151 ~sRrDC 156 (447)
T KOG4497|consen 151 LSRRDC 156 (447)
T ss_pred eecccH
Confidence 765543
No 153
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.00 E-value=64 Score=33.78 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=28.1
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
.+....++|||++++ .|.|..+++|+|+..|+++.
T Consensus 156 vv~~l~lsP~Gr~v~-----~g~ed~tvki~d~~agk~~~ 190 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVA-----SGGEDNTVKIWDLTAGKLSK 190 (825)
T ss_pred eeEEEeecCCCceee-----ccCCcceeeeeccccccccc
Confidence 356678999999886 35557799999999998874
No 154
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=26.75 E-value=62 Score=32.71 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=23.7
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
--+++||||||++. |.|.--+.||-++-++.+.
T Consensus 336 LCvcWSPDGKyIvt-----GGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVT-----GGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred EEEEEcCCccEEEe-----cCCcceEEEEEeccceEEE
Confidence 34579999999984 4444457778888777654
No 155
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=26.49 E-value=6.2e+02 Score=25.90 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=25.7
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+-+||.|++++++== |+=...+-|||+.+.+.
T Consensus 316 ~~~fnp~g~ii~lAGF--GNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGF--GNLPGDMEVWDVPNRKL 348 (566)
T ss_pred ceEECCCCCEEEEeec--CCCCCceEEEeccchhh
Confidence 3458999999988743 56777899999998654
No 156
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=26.31 E-value=89 Score=28.78 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=35.2
Q ss_pred EEEeccchhccC-----CCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 134 EILLDWNEIAEK-----YGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 134 evllD~n~la~~-----~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
--|.|+++|.=. .+ +-+-.+++|.||++|| .|+|...|=|-+++||..
T Consensus 213 vSLWD~~ELiC~R~isRld-wpVRTlSFS~dg~~lA-----SaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 213 VSLWDVDELICERCISRLD-WPVRTLSFSHDGRMLA-----SASEDHFIDIAEVETGDR 265 (313)
T ss_pred eeccChhHhhhheeecccc-CceEEEEeccCcceee-----ccCccceEEeEecccCCe
Confidence 346777777511 12 2355678999999998 578888899999999984
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=25.69 E-value=70 Score=32.52 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=0.0
Q ss_pred EeeEEeCCCCCEEE------EEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLA------YTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la------~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.+||+.+||. .+++.+.+|-..|+|||++||..
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l 294 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL 294 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch
No 158
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=25.19 E-value=2.4e+02 Score=24.99 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=21.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
..++++||||+.|.++-+..+. |+.+|+..
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~----i~~~~~~~ 165 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGR----IWRFDLDA 165 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTE----EEEEEEET
T ss_pred ccceEECCcchheeecccccce----eEEEeccc
Confidence 4568899999988777665553 77777753
No 159
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=25.07 E-value=1e+02 Score=29.21 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=22.0
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
-+++|.|-.++| .|+-...|.||.+.||.-+
T Consensus 268 ci~FSRDsEMlA-----sGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 268 CISFSRDSEMLA-----SGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred EEeecccHHHhh-----ccCcCCcEEEEEEecchHH
Confidence 345667766665 4555668999999999654
No 160
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=24.97 E-value=97 Score=25.14 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=26.6
Q ss_pred CCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEe
Q 040506 211 DSGFCVDITSTKDGKFITVNSNSRASSEEGLCD 243 (365)
Q Consensus 211 d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d 243 (365)
...|-+++..+.+|+|++|..|....+-+|-++
T Consensus 92 p~~~vlDvg~~~~G~~~lVE~N~~~~sG~Y~~d 124 (130)
T PF14243_consen 92 PPAYVLDVGVTDDGGWALVEANDGWSSGLYGCD 124 (130)
T ss_pred CCeEEEEEEEeCCCCEEEEEecCccccccccCC
Confidence 345778999999999999999998877766443
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=24.94 E-value=2.8e+02 Score=26.40 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=24.0
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
-..+|+.|.+||.+.. +| .+.|+|+.|..+
T Consensus 28 ~~~Fs~~G~~lAvGc~-nG----~vvI~D~~T~~i 57 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCA-NG----RVVIYDFDTFRI 57 (405)
T ss_pred eEEeccCcceeeeecc-CC----cEEEEEccccch
Confidence 4579999999999987 44 488899988653
No 162
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=24.71 E-value=3.2e+02 Score=20.79 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=19.2
Q ss_pred CCCeEEEEEEEECCCCcccC--eEEEE
Q 040506 170 SGDEQFMLQIKDLRNQCIVP--RVLCT 194 (365)
Q Consensus 170 ~G~e~~~l~v~Dl~tg~~l~--~v~~h 194 (365)
.|.+...+.|-+|.||+.+. +|..+
T Consensus 10 ~~~~~~~v~v~~L~tg~Pv~ga~V~l~ 36 (97)
T PF11974_consen 10 QGPDGLLVWVTSLSTGKPVAGAEVELY 36 (97)
T ss_pred EcCCCEEEEEeeCCCCCccCCCEEEEE
Confidence 46777889999999999887 44444
No 163
>PRK13616 lipoprotein LpqB; Provisional
Probab=24.12 E-value=8.3e+02 Score=25.41 Aligned_cols=144 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred EeeEEeCCCCCEEEEEEc---CCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEE
Q 040506 151 VGTCRVSPDHNFLAYTID---TSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFI 227 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d---~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l 227 (365)
+....+||||+.+||... ..++....|++.+...... .++....+.. ...++||++|
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~----------------~lt~g~~~t~----PsWspDG~~l 411 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV----------------QVLEGHSLTR----PSWSLDADAV 411 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce----------------eeecCCCCCC----ceECCCCCce
Q ss_pred EEE---------eCCCcceEEEEEeCCC----ceeecCc------cccCCcEEEEE------EecCcCCCCCceEE----
Q 040506 228 TVN---------SNSRASSEEGLCDRCD----QSISENE------ECSSGDYYLAR------CRAEKLYSANWQNI---- 278 (365)
Q Consensus 228 ~i~---------~~~~~tsev~~~d~~~----~~~~~~~------~~~~~~~~l~~------~~~~~~~~~~w~~v---- 278 (365)
... +....+.++|+++.+. + .++.+ .-+|.++.++. +-+...+... ..|
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~ 489 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPR 489 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccE
Q ss_pred -eCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCc
Q 040506 279 -ILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSI 316 (365)
Q Consensus 279 -i~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~ 316 (365)
+.+.-.....++.+.++.-++....++...++.+++++
T Consensus 490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG 528 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDG 528 (591)
T ss_pred EeecccCCccccceEecCCEEEEEecCCCCceEEEecCC
No 164
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=23.74 E-value=5.5e+02 Score=23.20 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=29.1
Q ss_pred EEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 149 VHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 149 ~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
..+...++.|.|++|| .|-+...+.++|+..|+.+.
T Consensus 232 savaav~vdpsgrll~-----sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLA-----SGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred ceeEEEEECCCcceee-----eccCCCceEEEEeeCCceee
Confidence 5677889999999987 45666778889999998764
No 165
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=23.69 E-value=5.8e+02 Score=23.52 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=66.8
Q ss_pred CeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC-----
Q 040506 172 DEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD----- 246 (365)
Q Consensus 172 ~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~----- 246 (365)
+|.-++|.||..||..+ -...+.. +. -++..+.||++|.|.-.++ |-+.|...
T Consensus 162 add~tVRLWD~rTgt~v---~sL~~~s-------------~V--tSlEvs~dG~ilTia~gss----V~Fwdaksf~~lK 219 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEV---QSLEFNS-------------PV--TSLEVSQDGRILTIAYGSS----VKFWDAKSFGLLK 219 (334)
T ss_pred ccCCceEEEEeccCcEE---EEEecCC-------------CC--cceeeccCCCEEEEecCce----eEEecccccccee
Confidence 45567999999999753 1111111 11 1356799999998876553 33333221
Q ss_pred ----ceeec----Cc--c---ccCCcEEEEEEecCcCCCCCceEEeCCCCCceEeEEEEe-CCEEEEEEecCCeeeEEEE
Q 040506 247 ----QSISE----NE--E---CSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIF-DGHLVLFVSKKGVPMLCSI 312 (365)
Q Consensus 247 ----~~~~~----~~--~---~~~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~-~~~lvl~~~~~g~~~l~v~ 312 (365)
.|-++ +. + ..|..|++++.+..... +.. ..--+....+-.|... ++-++....+||.-||+..
T Consensus 220 s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--Ei~-~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 220 SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--EIG-SYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred eccCccccccccccCCCceEEecCcceEEEEEeccCCc--eee-ecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 11121 10 1 25678899998875421 111 1111222345566665 3567788999999888887
Q ss_pred eC
Q 040506 313 DL 314 (365)
Q Consensus 313 ~l 314 (365)
..
T Consensus 297 ~~ 298 (334)
T KOG0278|consen 297 TP 298 (334)
T ss_pred cC
Confidence 65
No 166
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=23.61 E-value=74 Score=21.68 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=14.9
Q ss_pred EeCCCCCEEEEEEcCCCCeEEEEEE
Q 040506 155 RVSPDHNFLAYTIDTSGDEQFMLQI 179 (365)
Q Consensus 155 ~~Spdg~~la~~~d~~G~e~~~l~v 179 (365)
.++|||+++|.... .|...--+.|
T Consensus 31 a~~pdG~lvAL~~~-~g~~~rp~~V 54 (56)
T PF09142_consen 31 AFAPDGRLVALLEE-RGGRARPVVV 54 (56)
T ss_dssp EE-TTS-EEEEEEE-ETTEEEEEEE
T ss_pred EECCCCcEEEEEEc-cCCcEeEEEe
Confidence 48899999999966 4444444444
No 167
>PF07932 DAP_C: D-aminopeptidase, domain C; InterPro: IPR012857 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. D-aminopeptidase (Q9ZBA9 from SWISSPROT) is a dimeric enzyme with each monomer being composed of three domains. Domain C is organised to form a beta barrel made up of eight antiparallel beta strands. It is connected to domain B by a short linker sequence, and interacts extensively with the domain A, the catalytic domain. The gamma loop of domain C forms part of the wall of the catalytic pocket; domain C is in fact thought to confer substrate and inhibitor specificity to the enzyme. This domain is found in peptidases that belong to MEROPS peptidase family S12 (D-Ala-D-Ala carboxypeptidase B family, clan ME).; GO: 0004177 aminopeptidase activity; PDB: 1EI5_A.
Probab=23.46 E-value=1e+02 Score=23.54 Aligned_cols=36 Identities=11% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCcEEEEEEe--cCcCCCCCceEEeCCCCCceEeEEEE
Q 040506 257 SGDYYLARCR--AEKLYSANWQNIILPGEDISLQDMDI 292 (365)
Q Consensus 257 ~~~~~l~~~~--~~~~~~~~w~~vi~~~~~~~l~~v~~ 292 (365)
|++.++++++ +..|.+.+|+.++.-++.-.|.++.+
T Consensus 47 g~DVW~L~~~R~mDApaPGdWTlvf~R~~~G~V~gvti 84 (97)
T PF07932_consen 47 GDDVWALACPRGMDAPAPGDWTLVFQRDDKGAVTGVTI 84 (97)
T ss_dssp ETTEEEEEE---SSSS--EEEEEEEEE-TTS-EEEEEE
T ss_pred CCcEEEEeccccCCCCCCCceEEEEEecCCCcEEEEEE
Confidence 4567777776 44577789999986555666888776
No 168
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.32 E-value=3.2e+02 Score=28.44 Aligned_cols=18 Identities=11% Similarity=0.292 Sum_probs=11.2
Q ss_pred CCeEEEEEEEECCCCccc
Q 040506 171 GDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 171 G~e~~~l~v~Dl~tg~~l 188 (365)
|+|...|||++..|++-+
T Consensus 73 GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred ecCCceEEEEecccceee
Confidence 566666666666666543
No 169
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=22.96 E-value=4e+02 Score=28.70 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEe
Q 040506 159 DHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFT 208 (365)
Q Consensus 159 dg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~ 208 (365)
.|.++.++ |+....++-+|.+||+ .||+.+++.......+.|+
T Consensus 690 agglvF~~----gt~d~~l~A~D~~tGk---~lW~~~l~~~~~a~P~tY~ 732 (764)
T TIGR03074 690 AGGLVFIG----ATQDNYLRAYDLSTGK---ELWKARLPAGGQATPMTYM 732 (764)
T ss_pred cCCEEEEE----eCCCCEEEEEECCCCc---eeeEeeCCCCcccCCEEEE
Confidence 44555552 3334479999999999 5899999886555556665
No 170
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=22.91 E-value=3.5e+02 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=22.5
Q ss_pred EEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECC
Q 040506 149 VHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR 183 (365)
Q Consensus 149 ~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~ 183 (365)
-.+.++.+|.+|++|| .|.|....++|.++
T Consensus 57 GCiNAlqFS~N~~~L~-----SGGDD~~~~~W~~d 86 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLA-----SGGDDMHGRVWNVD 86 (609)
T ss_pred cccceeeeccCCeEEe-----ecCCcceeeeechH
Confidence 3577889999999887 35555677888874
No 171
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=22.34 E-value=1.1e+02 Score=19.63 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=21.3
Q ss_pred eCCCCCEEEEEEc---CCCCeEEEEEEEECCCCcc
Q 040506 156 VSPDHNFLAYTID---TSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 156 ~Spdg~~la~~~d---~~G~e~~~l~v~Dl~tg~~ 187 (365)
+.++++.+.|+=. ..+.....+.++|++|.+.
T Consensus 8 ~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W 42 (49)
T PF07646_consen 8 VVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQW 42 (49)
T ss_pred EEECCEEEEECCcccCCCCcccceeEEEECCCCEE
Confidence 4456666666443 4555666799999988764
No 172
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.17 E-value=3.9e+02 Score=26.12 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=41.4
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
.+..+.+|+||+++|.+-- .|+ +-|+++.+-+. ++ +..+....+-.++..+||.+++.=
T Consensus 283 siSsl~VS~dGkf~AlGT~-dGs----Vai~~~~~lq~---~~-------------~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTM-DGS----VAIYDAKSLQR---LQ-------------YVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred cceeEEEcCCCcEEEEecc-CCc----EEEEEeceeee---eE-------------eehhhheeeeeeEEEcCCcCcccc
Confidence 6778899999999999866 443 55556544332 11 111212223355778888888753
Q ss_pred EeCCCcceEEEEEe
Q 040506 230 NSNSRASSEEGLCD 243 (365)
Q Consensus 230 ~~~~~~tsev~~~d 243 (365)
.+++++..|.-+.
T Consensus 342 -vSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 342 -VSSDNEAAVTKLA 354 (398)
T ss_pred -cccCCceeEEEEe
Confidence 3333334444443
No 173
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=22.12 E-value=1.9e+02 Score=21.64 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=27.4
Q ss_pred EEEeccchhccC-CCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECC
Q 040506 134 EILLDWNEIAEK-YGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR 183 (365)
Q Consensus 134 evllD~n~la~~-~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~ 183 (365)
-+..|+.+...- .++..-.++.+|||+++|.++...++ .|+|+...
T Consensus 38 Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~----~I~vy~~~ 84 (86)
T PF01731_consen 38 VVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSLAH----SIHVYKRH 84 (86)
T ss_pred EEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCC----eEEEEEec
Confidence 445555443211 24445567899999998888765433 35665543
No 174
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=21.59 E-value=98 Score=23.93 Aligned_cols=32 Identities=9% Similarity=0.283 Sum_probs=22.8
Q ss_pred eCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 156 VSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 156 ~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
++.-++.|-|.++. .++.+.+.|+|.+||+.+
T Consensus 50 ~~~~~~~l~F~vde-~~~~~vVkViD~~T~eVI 81 (107)
T PF03646_consen 50 LQALNTSLRFSVDE-ESGRVVVKVIDKETGEVI 81 (107)
T ss_dssp HTTSS--EEEEEEE-ETTEEEEEEEETTT-SEE
T ss_pred HHhcCCceEEEEec-CCCcEEEEEEECCCCcEE
Confidence 34456778999996 456789999999999875
No 175
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=20.81 E-value=2.7e+02 Score=28.20 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=22.7
Q ss_pred CeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEEC
Q 040506 147 GYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDL 182 (365)
Q Consensus 147 ~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl 182 (365)
+-+.+..+.++|||+++|-+.. +|+ |.+||.
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~-DGS----IQ~W~~ 346 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCL-DGS----IQIWDK 346 (641)
T ss_pred cccCceeeecCCCcchhhhccc-CCc----eeeeec
Confidence 3456778889999999998877 343 555664
No 176
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.80 E-value=1.2e+02 Score=29.08 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=23.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+-+..+||-||||+=..| .-+|+|||+.+++
T Consensus 337 Vr~~af~p~Gkyi~ScaD-----Dktlrvwdl~~~~ 367 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCAD-----DKTLRVWDLKNLQ 367 (406)
T ss_pred eeeeEEcCCCeEEEEEec-----CCcEEEEEeccce
Confidence 445679999999876655 3479999998876
No 177
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=20.37 E-value=1.9e+02 Score=17.48 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=16.7
Q ss_pred EEEEEECCCCcccCeEEEEECCCC
Q 040506 176 MLQIKDLRNQCIVPRVLCTKLGSD 199 (365)
Q Consensus 176 ~l~v~Dl~tg~~l~~v~~h~lGt~ 199 (365)
.|+-+|.+||+ .+|.++.+..
T Consensus 11 ~l~AlD~~TG~---~~W~~~~~~~ 31 (38)
T PF01011_consen 11 YLYALDAKTGK---VLWKFQTGPP 31 (38)
T ss_dssp EEEEEETTTTS---EEEEEESSSG
T ss_pred EEEEEECCCCC---EEEeeeCCCC
Confidence 57778999998 4788888765
No 178
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.23 E-value=4.7e+02 Score=26.20 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=23.6
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+-.||+++|. |+|...++|||+.+..+|
T Consensus 73 s~~fR~DG~Llaa-----GD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 73 SVDFRSDGRLLAA-----GDESGHVKVFDMKSRVIL 103 (487)
T ss_pred EEEeecCCeEEEc-----cCCcCcEEEeccccHHHH
Confidence 3457789999986 566778999998775444
No 179
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=20.19 E-value=5.2e+02 Score=24.40 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
++-.....+|++.+.-.-+ .-++++||++||+ ++++|+. +..|--.+..++-|-.|+.
T Consensus 92 AVM~l~~~~d~s~i~S~gt-----Dk~v~~wD~~tG~---~~rk~k~--------------h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGT-----DKTVRGWDAETGK---RIRKHKG--------------HTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred eeEeeeeccCCCEEEEecC-----CceEEEEecccce---eeehhcc--------------ccceeeecCccccCCeEEE
Q ss_pred EeCCCcceEEE
Q 040506 230 NSNSRASSEEG 240 (365)
Q Consensus 230 ~~~~~~tsev~ 240 (365)
+.+...+-.||
T Consensus 150 SgsdD~t~kl~ 160 (338)
T KOG0265|consen 150 SGSDDGTLKLW 160 (338)
T ss_pred ecCCCceEEEE
No 180
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=20.17 E-value=6.2e+02 Score=23.35 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=17.5
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
-+...+++|+...+. -|.|.+-++.+|-.||+-
T Consensus 226 nV~SASL~P~k~~fV-----aGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 226 NVESASLHPKKEFFV-----AGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred ccccccccCCCceEE-----ecCcceEEEEEeccCCce
Confidence 344445666553221 255556666666666653
Done!