Query 040506
Match_columns 365
No_of_seqs 182 out of 1309
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:36:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iuj_A Prolyl endopeptidase; h 100.0 3.3E-53 1.1E-57 440.1 40.3 329 2-365 1-394 (693)
2 2xe4_A Oligopeptidase B; hydro 100.0 8.7E-50 3E-54 417.9 39.3 334 11-365 31-447 (751)
3 4hvt_A Ritya.17583.B, post-pro 100.0 2.3E-47 7.9E-52 394.4 30.0 319 23-365 13-419 (711)
4 2bkl_A Prolyl endopeptidase; m 100.0 1.4E-45 4.9E-50 382.5 37.5 322 12-365 2-386 (695)
5 2xdw_A Prolyl endopeptidase; a 100.0 9.2E-44 3.1E-48 369.7 38.9 323 11-365 4-403 (710)
6 1yr2_A Prolyl oligopeptidase; 100.0 4.6E-43 1.6E-47 366.3 39.1 325 10-365 37-430 (741)
7 2hqs_A Protein TOLB; TOLB, PAL 97.7 0.0053 1.8E-07 58.8 21.6 155 151-317 181-388 (415)
8 3azo_A Aminopeptidase; POP fam 97.3 0.007 2.4E-07 61.1 17.4 147 149-317 130-326 (662)
9 2gop_A Trilobed protease; beta 97.0 0.008 2.7E-07 55.1 13.1 62 152-232 62-123 (347)
10 2ojh_A Uncharacterized protein 96.8 0.092 3.2E-06 45.8 18.1 84 151-245 44-161 (297)
11 1xfd_A DIP, dipeptidyl aminope 96.6 0.33 1.1E-05 49.1 22.7 82 153-245 177-288 (723)
12 3pe7_A Oligogalacturonate lyas 96.5 0.17 5.9E-06 46.7 17.9 72 154-230 41-142 (388)
13 3c5m_A Oligogalacturonate lyas 96.4 0.022 7.6E-07 52.8 11.5 34 152-187 39-72 (396)
14 2ecf_A Dipeptidyl peptidase IV 96.4 0.076 2.6E-06 54.1 15.9 37 150-187 288-324 (741)
15 3iuj_A Prolyl endopeptidase; h 96.3 0.071 2.4E-06 54.5 15.2 88 154-246 239-359 (693)
16 3azo_A Aminopeptidase; POP fam 96.3 0.39 1.3E-05 48.1 20.6 147 151-317 190-370 (662)
17 2z3z_A Dipeptidyl aminopeptida 96.3 0.19 6.5E-06 50.8 18.3 77 151-243 260-341 (706)
18 1z68_A Fibroblast activation p 96.3 0.097 3.3E-06 53.2 16.1 53 131-187 46-102 (719)
19 2z3z_A Dipeptidyl aminopeptida 96.0 0.16 5.5E-06 51.4 16.4 50 131-187 53-113 (706)
20 3pe7_A Oligogalacturonate lyas 96.0 0.036 1.2E-06 51.4 10.6 37 151-187 240-276 (388)
21 1l0q_A Surface layer protein; 96.0 0.97 3.3E-05 41.5 22.5 151 152-317 35-234 (391)
22 2ecf_A Dipeptidyl peptidase IV 95.8 0.057 1.9E-06 55.1 11.8 29 151-185 111-139 (741)
23 2xdw_A Prolyl endopeptidase; a 95.7 0.31 1.1E-05 49.7 16.6 32 153-184 237-268 (710)
24 2hqs_A Protein TOLB; TOLB, PAL 95.6 1.6 5.3E-05 41.3 24.3 152 158-318 141-346 (415)
25 1z68_A Fibroblast activation p 95.2 0.32 1.1E-05 49.3 14.9 35 153-187 173-236 (719)
26 4a5s_A Dipeptidyl peptidase 4 95.2 0.77 2.6E-05 47.0 17.7 56 131-188 46-105 (740)
27 1k32_A Tricorn protease; prote 95.1 3.5 0.00012 43.9 23.3 151 151-317 55-236 (1045)
28 2gop_A Trilobed protease; beta 94.9 2.1 7E-05 38.5 24.4 37 151-187 106-164 (347)
29 2ojh_A Uncharacterized protein 94.6 1.6 5.6E-05 37.5 16.2 34 152-187 132-165 (297)
30 3o4h_A Acylamino-acid-releasin 94.5 0.14 4.8E-06 50.7 9.7 75 152-246 153-227 (582)
31 3s25_A Hypothetical 7-bladed b 94.5 2.8 9.5E-05 38.0 20.5 184 85-318 20-257 (302)
32 1l0q_A Surface layer protein; 94.3 0.53 1.8E-05 43.3 12.8 33 152-188 119-151 (391)
33 1yr2_A Prolyl oligopeptidase; 94.2 1.1 3.8E-05 45.8 16.2 33 153-185 272-304 (741)
34 1xfd_A DIP, dipeptidyl aminope 93.8 0.16 5.3E-06 51.5 8.6 78 149-243 255-341 (723)
35 4a5s_A Dipeptidyl peptidase 4 93.7 0.19 6.4E-06 51.6 9.1 86 150-245 261-352 (740)
36 3o4h_A Acylamino-acid-releasin 93.7 1.1 3.7E-05 44.1 14.4 33 152-187 198-230 (582)
37 3u4y_A Uncharacterized protein 93.6 3.6 0.00012 36.5 17.6 73 153-246 44-117 (331)
38 2xe4_A Oligopeptidase B; hydro 93.6 2.7 9.4E-05 43.1 17.7 76 88-185 230-305 (751)
39 4h5i_A Guanine nucleotide-exch 93.5 0.13 4.5E-06 47.8 6.9 32 153-187 138-169 (365)
40 3s25_A Hypothetical 7-bladed b 93.2 4.7 0.00016 36.5 21.3 144 155-317 110-294 (302)
41 2bkl_A Prolyl endopeptidase; m 92.9 2.2 7.5E-05 43.2 15.6 34 153-187 231-264 (695)
42 3c5m_A Oligogalacturonate lyas 92.8 0.49 1.7E-05 43.4 9.8 38 150-187 239-276 (396)
43 1mda_H Methylamine dehydrogena 92.1 0.7 2.4E-05 43.4 9.9 78 153-241 69-151 (368)
44 4h5i_A Guanine nucleotide-exch 92.0 0.51 1.7E-05 43.7 8.8 59 151-230 272-330 (365)
45 1k32_A Tricorn protease; prote 91.7 0.55 1.9E-05 50.2 9.7 73 151-245 381-460 (1045)
46 3u4y_A Uncharacterized protein 91.7 1.6 5.4E-05 39.0 11.5 73 152-245 179-251 (331)
47 3bws_A Protein LP49; two-domai 91.5 2 6.9E-05 39.9 12.4 38 151-188 256-296 (433)
48 3bws_A Protein LP49; two-domai 91.1 9.3 0.00032 35.2 19.3 73 151-245 214-291 (433)
49 3zwl_B Eukaryotic translation 91.0 3.2 0.00011 37.1 12.9 84 151-243 35-148 (369)
50 3scy_A Hypothetical bacterial 90.9 1.3 4.5E-05 40.3 10.3 31 153-187 215-245 (361)
51 3vgz_A Uncharacterized protein 89.9 10 0.00034 33.7 18.4 29 217-246 145-173 (353)
52 2mad_H Methylamine dehydrogena 89.8 0.97 3.3E-05 42.3 8.4 82 153-246 70-156 (373)
53 3sjl_D Methylamine dehydrogena 89.2 0.62 2.1E-05 44.1 6.5 81 154-245 83-168 (386)
54 3vgz_A Uncharacterized protein 89.0 3.1 0.00011 37.1 11.1 68 153-232 235-302 (353)
55 4g56_B MGC81050 protein; prote 89.0 1.9 6.5E-05 39.6 9.7 38 150-187 44-82 (357)
56 3hfq_A Uncharacterized protein 88.9 4 0.00014 36.7 11.8 74 151-243 242-316 (347)
57 2ynn_A Coatomer subunit beta'; 88.8 4.9 0.00017 35.6 12.1 74 151-232 16-117 (304)
58 1gxr_A ESG1, transducin-like e 88.7 4.8 0.00017 35.4 12.0 32 151-187 227-258 (337)
59 2oiz_A Aromatic amine dehydrog 88.1 2.2 7.7E-05 39.3 9.6 81 153-245 54-139 (361)
60 4ggc_A P55CDC, cell division c 88.0 1.5 5.1E-05 38.6 8.0 45 134-188 14-58 (318)
61 3ow8_A WD repeat-containing pr 88.0 4.3 0.00015 36.4 11.3 33 151-188 167-199 (321)
62 1pby_B Quinohemoprotein amine 88.0 2.1 7.2E-05 37.9 9.1 65 153-245 245-309 (337)
63 1ri6_A Putative isomerase YBHE 87.3 5.3 0.00018 35.2 11.4 31 153-187 182-214 (343)
64 1erj_A Transcriptional repress 87.1 4 0.00014 37.8 10.8 33 151-188 126-158 (393)
65 1jof_A Carboxy-CIS,CIS-muconat 86.4 5.1 0.00017 36.6 11.0 65 151-232 147-212 (365)
66 3hfq_A Uncharacterized protein 86.1 5.3 0.00018 35.8 10.8 72 153-243 145-217 (347)
67 1nr0_A Actin interacting prote 85.9 5.8 0.0002 39.2 11.8 83 154-243 24-135 (611)
68 4gqb_B Methylosome protein 50; 85.9 3.1 0.0001 38.1 9.1 33 151-188 130-162 (344)
69 4aow_A Guanine nucleotide-bind 85.3 8.6 0.0003 33.8 11.7 33 151-188 218-250 (340)
70 4gqb_B Methylosome protein 50; 85.3 5 0.00017 36.7 10.2 32 152-188 218-250 (344)
71 2oit_A Nucleoporin 214KDA; NH2 84.5 2.6 9E-05 40.1 8.2 34 151-185 95-128 (434)
72 3sjl_D Methylamine dehydrogena 84.5 2.3 7.7E-05 40.2 7.5 67 154-233 142-208 (386)
73 4aez_A CDC20, WD repeat-contai 84.4 9.4 0.00032 35.1 11.9 85 151-245 137-247 (401)
74 3v7d_B Cell division control p 84.3 26 0.00089 32.5 17.3 31 284-314 433-463 (464)
75 3vu4_A KMHSV2; beta-propeller 84.3 1.7 5.9E-05 39.8 6.6 72 151-244 198-269 (355)
76 1erj_A Transcriptional repress 84.2 1.8 6.1E-05 40.2 6.7 32 151-188 67-98 (393)
77 1ri6_A Putative isomerase YBHE 84.1 4.8 0.00016 35.6 9.4 28 151-182 86-113 (343)
78 3c75_H MADH, methylamine dehyd 84.0 1.4 4.8E-05 42.2 6.0 83 153-246 122-209 (426)
79 1jmx_B Amine dehydrogenase; ox 83.9 3.3 0.00011 36.8 8.2 66 152-245 258-324 (349)
80 3mkq_A Coatomer beta'-subunit; 83.3 8.4 0.00029 39.0 11.9 33 151-188 16-48 (814)
81 1gxr_A ESG1, transducin-like e 83.2 10 0.00036 33.1 11.2 33 151-188 144-176 (337)
82 1pby_B Quinohemoprotein amine 82.8 9.4 0.00032 33.5 10.8 77 153-245 38-123 (337)
83 1jmx_B Amine dehydrogenase; ox 82.7 9.2 0.00031 33.8 10.7 77 153-244 47-132 (349)
84 2oiz_A Aromatic amine dehydrog 82.2 3.1 0.00011 38.3 7.5 69 154-245 259-333 (361)
85 3scy_A Hypothetical bacterial 81.9 15 0.0005 33.0 11.9 27 217-243 159-185 (361)
86 2w18_A PALB2, fancn, partner a 81.9 2.9 9.9E-05 39.0 6.9 33 155-187 233-272 (356)
87 2mad_H Methylamine dehydrogena 81.8 6.7 0.00023 36.5 9.6 74 154-246 272-350 (373)
88 4gga_A P55CDC, cell division c 81.8 15 0.0005 34.1 12.1 33 151-188 150-182 (420)
89 4g56_B MGC81050 protein; prote 81.3 4.9 0.00017 36.7 8.4 33 151-188 142-174 (357)
90 4ery_A WD repeat-containing pr 81.2 15 0.00051 32.1 11.5 33 151-188 68-100 (312)
91 4ery_A WD repeat-containing pr 80.9 12 0.00042 32.7 10.8 33 151-188 110-142 (312)
92 3ei3_B DNA damage-binding prot 80.5 13 0.00043 33.7 11.0 28 151-183 166-193 (383)
93 3lrv_A PRE-mRNA-splicing facto 80.4 7.7 0.00026 34.9 9.3 33 151-188 173-205 (343)
94 2ymu_A WD-40 repeat protein; u 80.3 9.8 0.00034 36.7 10.7 32 151-188 19-50 (577)
95 2vdu_B TRNA (guanine-N(7)-)-me 80.0 39 0.0013 31.4 19.4 72 151-244 105-178 (450)
96 1nr0_A Actin interacting prote 78.8 7.8 0.00027 38.3 9.5 60 152-232 452-511 (611)
97 3zwl_B Eukaryotic translation 78.5 18 0.00061 32.0 11.2 36 151-186 118-153 (369)
98 2aq5_A Coronin-1A; WD40 repeat 78.5 12 0.0004 34.4 10.1 33 151-187 134-166 (402)
99 4a11_B DNA excision repair pro 78.4 25 0.00086 31.5 12.3 33 151-188 248-280 (408)
100 3iz6_a 40S ribosomal protein R 77.9 3.8 0.00013 37.7 6.5 32 151-187 252-283 (380)
101 3mmy_A MRNA export factor; mRN 77.6 9.2 0.00032 33.9 8.9 63 151-235 276-338 (368)
102 4ggc_A P55CDC, cell division c 77.4 30 0.001 29.8 12.2 34 151-189 70-103 (318)
103 3ow8_A WD repeat-containing pr 77.3 28 0.00096 30.9 12.1 84 151-245 83-194 (321)
104 2aq5_A Coronin-1A; WD40 repeat 77.2 14 0.00047 33.9 10.2 73 152-243 224-296 (402)
105 3frx_A Guanine nucleotide-bind 77.2 12 0.00041 33.2 9.6 58 151-231 199-256 (319)
106 3fm0_A Protein CIAO1; WDR39,SG 77.0 6.7 0.00023 35.4 7.8 30 153-187 21-50 (345)
107 4gga_A P55CDC, cell division c 76.5 9.4 0.00032 35.4 8.9 36 151-188 279-314 (420)
108 2pbi_B Guanine nucleotide-bind 76.0 18 0.00061 32.7 10.5 32 151-187 243-274 (354)
109 4aez_A CDC20, WD repeat-contai 75.9 32 0.0011 31.4 12.4 32 151-187 220-251 (401)
110 1got_B GT-beta; complex (GTP-b 75.5 19 0.00066 32.1 10.6 32 151-187 229-260 (340)
111 2xzm_R RACK1; ribosome, transl 75.5 25 0.00086 31.4 11.3 30 151-185 216-245 (343)
112 2ynn_A Coatomer subunit beta'; 74.8 4.6 0.00016 35.8 5.9 32 151-187 100-131 (304)
113 2vdu_B TRNA (guanine-N(7)-)-me 74.5 15 0.0005 34.4 9.8 28 153-186 9-36 (450)
114 1k8k_C P40, ARP2/3 complex 41 74.5 5.6 0.00019 35.6 6.6 29 153-186 13-41 (372)
115 2j04_A TAU60, YPL007P, hypothe 74.5 7.6 0.00026 38.7 7.8 32 151-187 132-163 (588)
116 1mda_H Methylamine dehydrogena 74.3 9.1 0.00031 35.7 8.0 72 154-246 269-346 (368)
117 3fm0_A Protein CIAO1; WDR39,SG 74.3 16 0.00054 32.8 9.6 31 151-186 64-94 (345)
118 2pm9_A Protein WEB1, protein t 74.1 4.2 0.00014 37.2 5.7 36 151-186 15-56 (416)
119 3c75_H MADH, methylamine dehyd 73.3 10 0.00035 36.1 8.3 66 153-231 181-246 (426)
120 3dm0_A Maltose-binding peripla 72.8 27 0.00093 34.8 11.8 33 151-188 433-465 (694)
121 3frx_A Guanine nucleotide-bind 71.5 8.2 0.00028 34.4 6.8 68 151-233 240-307 (319)
122 1nir_A Nitrite reductase; hemo 71.2 18 0.00063 35.3 9.8 68 151-243 181-254 (543)
123 3dwl_C Actin-related protein 2 71.0 16 0.00056 32.7 8.9 31 151-186 58-88 (377)
124 3lrv_A PRE-mRNA-splicing facto 70.9 41 0.0014 29.9 11.6 32 151-187 128-161 (343)
125 1got_B GT-beta; complex (GTP-b 70.9 29 0.00098 30.9 10.5 32 151-187 58-89 (340)
126 1qks_A Cytochrome CD1 nitrite 70.8 34 0.0012 33.7 11.7 33 153-189 244-280 (567)
127 3i2n_A WD repeat-containing pr 70.6 25 0.00087 30.8 10.0 34 151-189 212-248 (357)
128 1jof_A Carboxy-CIS,CIS-muconat 70.2 60 0.002 29.2 12.6 32 152-187 196-229 (365)
129 4e54_B DNA damage-binding prot 69.4 6.1 0.00021 37.0 5.7 31 152-187 213-243 (435)
130 3vl1_A 26S proteasome regulato 69.4 32 0.0011 31.2 10.7 71 155-233 104-202 (420)
131 2pbi_B Guanine nucleotide-bind 69.1 15 0.00053 33.2 8.3 33 151-188 157-189 (354)
132 2w18_A PALB2, fancn, partner a 68.5 3.5 0.00012 38.4 3.6 38 151-188 159-216 (356)
133 3dwl_C Actin-related protein 2 68.5 4.3 0.00015 36.8 4.3 30 151-185 14-43 (377)
134 2xzm_R RACK1; ribosome, transl 68.5 13 0.00043 33.4 7.5 32 151-187 79-110 (343)
135 3ei3_B DNA damage-binding prot 68.3 27 0.00093 31.4 9.8 81 151-243 253-336 (383)
136 1nir_A Nitrite reductase; hemo 68.2 7.6 0.00026 38.1 6.3 36 152-187 482-517 (543)
137 1pgu_A Actin interacting prote 67.6 16 0.00053 35.3 8.4 29 151-185 21-49 (615)
138 3sfz_A APAF-1, apoptotic pepti 67.0 30 0.001 37.1 11.1 33 151-188 660-692 (1249)
139 1r5m_A SIR4-interacting protei 66.6 39 0.0013 30.4 10.6 33 151-188 250-282 (425)
140 1k8k_C P40, ARP2/3 complex 41 66.6 23 0.00078 31.4 8.8 31 151-186 55-85 (372)
141 4aow_A Guanine nucleotide-bind 66.4 5 0.00017 35.5 4.2 31 151-186 309-339 (340)
142 1qks_A Cytochrome CD1 nitrite 66.2 35 0.0012 33.6 10.6 66 153-243 201-272 (567)
143 2oaj_A Protein SNI1; WD40 repe 66.1 29 0.001 36.2 10.6 31 151-186 20-50 (902)
144 2xyi_A Probable histone-bindin 65.9 22 0.00077 33.0 8.9 31 151-185 280-310 (430)
145 3f3f_A Nucleoporin SEH1; struc 65.2 59 0.002 27.9 11.2 30 151-185 14-43 (351)
146 3mmy_A MRNA export factor; mRN 65.2 36 0.0012 29.8 9.8 32 151-187 89-120 (368)
147 3dm0_A Maltose-binding peripla 64.3 13 0.00046 37.1 7.4 77 151-233 605-683 (694)
148 1sq9_A Antiviral protein SKI8; 64.3 39 0.0013 30.3 10.1 84 151-244 236-320 (397)
149 2ece_A 462AA long hypothetical 64.1 26 0.00089 33.7 8.8 74 151-231 323-399 (462)
150 1vyh_C Platelet-activating fac 63.7 29 0.00098 32.1 9.1 33 151-188 111-143 (410)
151 2ymu_A WD-40 repeat protein; u 63.4 51 0.0018 31.4 11.2 31 151-187 470-500 (577)
152 2iwa_A Glutamine cyclotransfer 63.4 36 0.0012 30.0 9.2 33 153-188 25-57 (266)
153 3k26_A Polycomb protein EED; W 63.0 42 0.0014 29.4 9.9 32 152-188 73-108 (366)
154 1vyh_C Platelet-activating fac 62.2 16 0.00056 33.8 7.1 33 151-188 153-185 (410)
155 1r5m_A SIR4-interacting protei 61.8 21 0.00071 32.3 7.7 79 151-234 333-416 (425)
156 4a11_B DNA excision repair pro 60.0 26 0.00088 31.5 7.9 86 151-244 189-274 (408)
157 3dw8_B Serine/threonine-protei 59.8 55 0.0019 29.8 10.4 73 151-244 229-313 (447)
158 3dw8_B Serine/threonine-protei 59.4 17 0.00059 33.4 6.7 30 154-188 348-377 (447)
159 1yfq_A Cell cycle arrest prote 58.3 31 0.0011 30.1 8.0 33 150-187 253-285 (342)
160 3vl1_A 26S proteasome regulato 58.3 72 0.0025 28.7 10.8 32 151-187 293-325 (420)
161 2oaj_A Protein SNI1; WD40 repe 57.3 22 0.00074 37.3 7.6 33 150-187 490-522 (902)
162 2j04_A TAU60, YPL007P, hypothe 56.9 30 0.001 34.4 8.0 77 152-235 19-108 (588)
163 3jrp_A Fusion protein of prote 56.8 22 0.00076 31.5 6.8 28 151-183 14-41 (379)
164 2ovr_B FBW7, F-BOX/WD repeat p 55.9 60 0.0021 29.9 10.0 24 159-187 288-311 (445)
165 2iwa_A Glutamine cyclotransfer 55.9 47 0.0016 29.2 8.6 31 153-188 109-139 (266)
166 3i2n_A WD repeat-containing pr 55.9 44 0.0015 29.2 8.6 37 151-188 21-57 (357)
167 3mkq_A Coatomer beta'-subunit; 54.9 48 0.0016 33.3 9.7 30 151-185 100-129 (814)
168 3iz6_a 40S ribosomal protein R 54.7 8.4 0.00029 35.3 3.6 32 151-187 69-100 (380)
169 3dsm_A Uncharacterized protein 53.5 39 0.0013 30.1 7.9 73 152-246 228-302 (328)
170 3zwu_A Alkaline phosphatase PH 53.2 48 0.0017 32.9 9.0 70 147-233 474-551 (592)
171 2pm7_B Protein transport prote 52.9 1.1E+02 0.0038 26.3 11.9 28 153-185 14-41 (297)
172 3sfz_A APAF-1, apoptotic pepti 52.1 80 0.0027 33.7 11.3 33 151-188 618-650 (1249)
173 2xyi_A Probable histone-bindin 51.7 1.2E+02 0.0042 27.8 11.3 29 152-185 185-214 (430)
174 4e54_B DNA damage-binding prot 51.6 13 0.00046 34.6 4.5 33 151-188 299-331 (435)
175 1pgu_A Actin interacting prote 51.0 52 0.0018 31.5 8.9 32 151-187 491-522 (615)
176 3bg1_A Protein SEC13 homolog; 50.7 17 0.00058 32.2 4.9 30 152-186 17-46 (316)
177 4gq1_A NUP37; propeller, trans 49.5 92 0.0031 28.3 10.0 27 157-188 264-290 (393)
178 3vu4_A KMHSV2; beta-propeller 49.4 1.2E+02 0.0042 26.9 10.7 34 151-188 61-94 (355)
179 3k26_A Polycomb protein EED; W 49.2 35 0.0012 30.0 6.8 64 153-233 290-356 (366)
180 3jrp_A Fusion protein of prote 48.4 52 0.0018 28.9 7.9 32 151-187 150-194 (379)
181 1fwx_A Nitrous oxide reductase 47.0 1E+02 0.0035 30.6 10.1 60 157-234 143-216 (595)
182 3odt_A Protein DOA1; ubiquitin 46.6 1.3E+02 0.0045 25.3 10.3 32 151-188 187-218 (313)
183 3dsm_A Uncharacterized protein 46.5 45 0.0015 29.7 7.1 71 152-245 175-252 (328)
184 3g4e_A Regucalcin; six bladed 46.4 1.4E+02 0.0049 25.7 13.7 32 152-187 152-185 (297)
185 1sq9_A Antiviral protein SKI8; 46.3 1.2E+02 0.0042 26.8 10.2 33 151-188 294-326 (397)
186 2hes_X YDR267CP; beta-propelle 46.1 1.5E+02 0.0052 25.9 11.2 29 151-184 61-89 (330)
187 3mbr_X Glutamine cyclotransfer 44.3 45 0.0015 29.0 6.4 40 279-318 15-54 (243)
188 3gre_A Serine/threonine-protei 44.0 1.4E+02 0.0048 27.1 10.4 29 154-187 176-204 (437)
189 3nol_A Glutamine cyclotransfer 43.2 64 0.0022 28.4 7.2 41 278-318 36-76 (262)
190 1bpo_A Protein (clathrin); cla 42.6 2E+02 0.0069 27.6 10.9 95 131-232 47-170 (494)
191 1fwx_A Nitrous oxide reductase 42.0 95 0.0032 30.8 9.0 89 152-245 198-307 (595)
192 2xzh_A Clathrin heavy chain 1; 41.3 1.6E+02 0.0056 27.1 9.7 93 133-232 50-171 (365)
193 1yfq_A Cell cycle arrest prote 40.9 1.5E+02 0.005 25.5 9.6 27 152-184 105-131 (342)
194 2qe8_A Uncharacterized protein 40.1 1.3E+02 0.0046 26.6 9.3 86 151-243 122-223 (343)
195 4gq1_A NUP37; propeller, trans 39.8 22 0.00075 32.7 3.9 24 159-187 155-178 (393)
196 3odt_A Protein DOA1; ubiquitin 38.3 1.3E+02 0.0044 25.4 8.7 30 153-188 23-52 (313)
197 3no2_A Uncharacterized protein 38.1 1.9E+02 0.0066 24.8 10.6 67 153-245 41-107 (276)
198 3v7d_B Cell division control p 36.6 80 0.0027 29.1 7.4 29 153-187 396-424 (464)
199 2xzh_A Clathrin heavy chain 1; 35.6 1.7E+02 0.0059 26.9 8.9 66 154-233 265-332 (365)
200 3gre_A Serine/threonine-protei 31.4 1.3E+02 0.0043 27.3 7.8 29 151-184 66-95 (437)
201 2dg1_A DRP35, lactonase; beta 31.1 2.5E+02 0.0087 24.1 11.0 32 151-187 47-78 (333)
202 2pm9_A Protein WEB1, protein t 30.7 1.2E+02 0.0042 26.9 7.5 33 151-187 168-200 (416)
203 2hes_X YDR267CP; beta-propelle 30.5 2.1E+02 0.0071 24.9 8.9 29 151-184 110-138 (330)
204 3jro_A Fusion protein of prote 30.1 73 0.0025 32.2 6.3 31 285-317 205-239 (753)
205 4hvt_A Ritya.17583.B, post-pro 29.7 4E+02 0.014 26.8 11.7 89 131-244 338-428 (711)
206 2j04_B YDR362CP, TAU91; beta p 29.3 1.1E+02 0.0036 29.7 7.0 56 153-230 360-415 (524)
207 1bpo_A Protein (clathrin); cla 29.1 2.5E+02 0.0085 27.0 9.1 67 154-234 264-332 (494)
208 3hrp_A Uncharacterized protein 28.3 2.4E+02 0.0084 25.8 9.2 33 150-187 132-164 (409)
209 2ghs_A AGR_C_1268P; regucalcin 26.9 2.9E+02 0.01 24.1 9.2 30 151-187 92-121 (326)
210 2ece_A 462AA long hypothetical 26.7 1.5E+02 0.0053 28.3 7.4 81 136-230 125-205 (462)
211 4a9v_A PHOX; hydrolase, beta-p 25.4 2.4E+02 0.0081 27.9 8.6 70 147-233 474-551 (592)
212 2j04_B YDR362CP, TAU91; beta p 25.1 4.5E+02 0.016 25.0 11.3 30 152-186 211-246 (524)
213 2kyw_A Adhesion exoprotein; st 24.1 1E+02 0.0035 21.4 4.0 33 149-181 46-78 (87)
214 3dr2_A Exported gluconolactona 23.4 3E+02 0.01 23.6 8.4 35 152-186 191-226 (305)
215 3jro_A Fusion protein of prote 23.3 4.1E+02 0.014 26.5 10.4 32 151-187 102-135 (753)
216 2dg1_A DRP35, lactonase; beta 22.7 3.6E+02 0.012 23.0 9.4 36 151-187 89-124 (333)
217 2oit_A Nucleoporin 214KDA; NH2 22.6 2.9E+02 0.0098 25.5 8.6 31 151-186 152-183 (434)
218 2pm7_B Protein transport prote 22.1 3.6E+02 0.012 22.8 9.2 31 151-186 207-240 (297)
219 3k2t_A LMO2511 protein; lister 21.7 76 0.0026 20.9 2.9 22 90-111 26-47 (57)
220 2ghs_A AGR_C_1268P; regucalcin 20.7 4.2E+02 0.014 23.0 10.4 29 153-185 183-213 (326)
No 1
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=100.00 E-value=3.3e-53 Score=440.08 Aligned_cols=329 Identities=17% Similarity=0.218 Sum_probs=278.1
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEccCCCeeecccccccCCCChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCC
Q 040506 2 GAHTLASSSPPPPVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSK 81 (365)
Q Consensus 2 ~~~~~~~~~~~~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~ 81 (365)
|.|..+...+.||+|+|+|+++++||+++.|||+||||.++|+|++||++||+||+++|+++ +++++|++||+++++++
T Consensus 1 ~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~n~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 79 (693)
T 3iuj_A 1 GSHMSGKARLHYPVTRQGEQVDHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQI-PYRAAIKEKLAASWNYA 79 (693)
T ss_dssp ---------CCCCCCCCCCCEEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHSCCC
T ss_pred CCccccccCCCCCCCCCCCeEEEeCCccccCCchhhcCCCCHHHHHHHHHHHHHHHHHHccC-hhHHHHHHHHHHhhccc
Confidence 56777888888999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCCeeeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCC
Q 040506 82 ISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHN 161 (365)
Q Consensus 82 ~~~~p~~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~ 161 (365)
+.++|.++|+|+||+|++++++|+++||+.. .+.||+|||+|+++++ +++.++++++||||+
T Consensus 80 ~~~~p~~~g~~~y~~~~~~~~~~~~~~r~~~-----------------~~~~~vllD~n~la~~-~~~~l~~~~~SpDg~ 141 (693)
T 3iuj_A 80 KEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-----------------GKPAEVFLDPNTLSPD-GTTALDQLSFSRDGR 141 (693)
T ss_dssp EECCCEEETTEEEEEEECSSCSSCEEEEECT-----------------TSCCEEEECGGGGSTT-SCCEEEEEEECTTSS
T ss_pred cCCCCEEECCEEEEEEEcCCCceeEEEEeCC-----------------CCCcEEEEehhhccCC-CcEEEEEEEECCCCC
Confidence 9999999999999999999999999999753 2568999999999998 677899999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEECCCCcccC---------------------------------------eEEEEECCCCCCC
Q 040506 162 FLAYTIDTSGDEQFMLQIKDLRNQCIVP---------------------------------------RVLCTKLGSDSTD 202 (365)
Q Consensus 162 ~la~~~d~~G~e~~~l~v~Dl~tg~~l~---------------------------------------~v~~h~lGt~~~~ 202 (365)
+|||+++.+|+|+++|+|+|++||+.+. +||+|++|+++.+
T Consensus 142 ~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 221 (693)
T 3iuj_A 142 ILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED 221 (693)
T ss_dssp EEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG
T ss_pred EEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc
Confidence 9999999999999999999999998653 2999999999999
Q ss_pred CccEEeeCC--CCeEEEEEEcCCCcEEEEEeCCCcc-eEEEEEeCCC-----ceeec-----------Cc-------ccc
Q 040506 203 DAPIFTEGD--SGFCVDITSTKDGKFITVNSNSRAS-SEEGLCDRCD-----QSISE-----------NE-------ECS 256 (365)
Q Consensus 203 d~lvf~e~d--~~~~~~~~~s~d~~~l~i~~~~~~t-sev~~~d~~~-----~~~~~-----------~~-------~~~ 256 (365)
|++||++++ +.+++++..|+||++|+|.+.++.+ +++|+++.+. ..+.. ++ +.+
T Consensus 222 ~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~ 301 (693)
T 3iuj_A 222 DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRD 301 (693)
T ss_dssp CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTT
T ss_pred ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCC
Confidence 999999876 5567888999999999999887765 7999998532 11111 11 124
Q ss_pred CCcEEEEEEecCcCCCCCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccccccccchhcCCCccccCC
Q 040506 257 SGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPL 336 (365)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~i~~ 336 (365)
++++.|+.+++.++...+|++|+++.++. + +++.++++||+.++++|.++|++++++++. ...+++
T Consensus 302 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~------------~~~l~~ 367 (693)
T 3iuj_A 302 APNRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDATARVEQFDYEGKR------------VREVAL 367 (693)
T ss_dssp CTTCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETTEEEEEEECTTSCE------------EEEECC
T ss_pred CCCCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECCeeEEEEEECCCCe------------eEEeec
Confidence 56788888888876667899999887664 6 999999999999999999999999997542 246788
Q ss_pred CCCeeeeecCCCCCCCCCEEEEEEeccCC
Q 040506 337 PSSSCSIVPGSNHDFMSSVYRAVLSSPVV 365 (365)
Q Consensus 337 p~~~~~~~~~~~~~~~s~~~~~~~sS~~~ 365 (365)
|+.+++..++.+ ++++.++|+++|+++
T Consensus 368 p~~~~~~~~~~~--~d~~~l~~~~ss~~t 394 (693)
T 3iuj_A 368 PGLGSVSGFNGK--HDDPALYFGFENYAQ 394 (693)
T ss_dssp SSSSEEEECCCC--TTCSCEEEEEECSSS
T ss_pred CCCceEEeeecC--CCCCEEEEEecCCCC
Confidence 887766666554 679999999999864
No 2
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=100.00 E-value=8.7e-50 Score=417.86 Aligned_cols=334 Identities=20% Similarity=0.383 Sum_probs=280.6
Q ss_pred CCCCCCCCCCeEEccCC---------------CeeecccccccCCC--ChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHH
Q 040506 11 PPPPVPKKIPYEASAHG---------------LTWQDPYHWMKNTN--DPDFINHLNHENSYAQASMSDTQTLQRTLFSE 73 (365)
Q Consensus 11 ~~~P~a~~~~~~~~~hG---------------~~~~DpY~WLed~~--~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e 73 (365)
+.||+|+|+|++++ || +++.|||+||||.+ +|+|++||++||+||+++|+++++++++|++|
T Consensus 31 ~~~p~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~d~y~wl~d~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~l~~e 109 (751)
T 2xe4_A 31 AQPPIAAKKPHRVT-LGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKVYFQARSADIAQLRDDIYAE 109 (751)
T ss_dssp CCCCCCCCCCCEEE-ESCCTTSCCCSSCCSSCEEEECTTGGGCCTTSCCHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred CCCCCCCCCCeeec-CCCcccccccccccCCCeEEeeCCccccCCCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 56899999999999 99 99999999999998 99999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCeeeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCC--ceEEEeccchhccCCCeEEE
Q 040506 74 MKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFG--KEEILLDWNEIAEKYGYVHV 151 (365)
Q Consensus 74 ~~~~~~~~~~~~p~~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~--~~evllD~n~la~~~~~~~~ 151 (365)
|++++++++.++|.+.|+|+||+|+.++++|+++||+.... ...+ .+++|||+|+++++++|+.+
T Consensus 110 ~~~~~~~~~~~~p~~~g~~~yy~~~~~g~~~~vl~r~~~~~-------------~~~~~~~~~vlld~n~~a~~~~~~~~ 176 (751)
T 2xe4_A 110 HISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDK-------------EPGDVAAEEVIIDVNQVAEGKAFCDV 176 (751)
T ss_dssp HHHTSCSSEECCCEEETTEEEEEEECTTCCSCEEEEEETTS-------------CTTCTTTCEEEEEHHHHTTTCSCCEE
T ss_pred HHHhcccccCCCCeEECCEEEEEEECCCCceeEEEEEcCCC-------------CCCCCcCCEEEechhHhccCCCeEEE
Confidence 99999999999999999999999999999999999986410 0013 57999999999999899999
Q ss_pred eeEEeC-CCCCEEEEEEcCCCCeEEEEEEEECCCC-cccC-------------------------------eEEEEECCC
Q 040506 152 GTCRVS-PDHNFLAYTIDTSGDEQFMLQIKDLRNQ-CIVP-------------------------------RVLCTKLGS 198 (365)
Q Consensus 152 ~~~~~S-pdg~~la~~~d~~G~e~~~l~v~Dl~tg-~~l~-------------------------------~v~~h~lGt 198 (365)
+.+++| |||++|||+.+.+|+|+++|+|+|+++| +.++ +||+|++|+
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence 999999 9999999999999999999999999999 7443 699999999
Q ss_pred CCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC---ce----eec---------C---c------
Q 040506 199 DSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD---QS----ISE---------N---E------ 253 (365)
Q Consensus 199 ~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~---~~----~~~---------~---~------ 253 (365)
++.++++||++++..|++++..|+||++|++.+.+..++++|++|.+. .. +++ . +
T Consensus 257 ~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~ 336 (751)
T 2xe4_A 257 LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVIL 336 (751)
T ss_dssp CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEE
T ss_pred CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEE
Confidence 987889999988888888899999999999999887789999998542 11 111 1 1
Q ss_pred -ccc-CCcEEEEEEecCcCCCCCceE-EeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccccccccchhcCCC
Q 040506 254 -ECS-SGDYYLARCRAEKLYSANWQN-IILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLN 330 (365)
Q Consensus 254 -~~~-~~~~~l~~~~~~~~~~~~w~~-vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~ 330 (365)
+.+ ++++.|+.+++.++ ..|++ |+++.++..|+++.+++++|++.++++|.++|.++++..... .|...+
T Consensus 337 t~~~~a~~~~L~~~d~~~~--~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~-----~~~~g~ 409 (751)
T 2xe4_A 337 TNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDG-----VFKAGT 409 (751)
T ss_dssp ECTTTCTTCEEEEEETTST--TCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTS-----CCCTTT
T ss_pred eCCCCCCCcEEEEEcCCCc--ccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccc-----cccCCc
Confidence 112 45677777776543 57999 999988888999999999999999999999999999721000 000002
Q ss_pred -ccccCCCCCeeeeecCCCC--CCCCCEEEEEEeccCC
Q 040506 331 -PWFFPLPSSSCSIVPGSNH--DFMSSVYRAVLSSPVV 365 (365)
Q Consensus 331 -~~~i~~p~~~~~~~~~~~~--~~~s~~~~~~~sS~~~ 365 (365)
.+.|++|+.++++.++.+. +++++.++|+++|+++
T Consensus 410 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~ 447 (751)
T 2xe4_A 410 GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLAT 447 (751)
T ss_dssp CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTE
T ss_pred cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCC
Confidence 3567888877677776555 6788999999999863
No 3
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=100.00 E-value=2.3e-47 Score=394.45 Aligned_cols=319 Identities=11% Similarity=0.107 Sum_probs=255.7
Q ss_pred EccCCCeeecccccccCCCChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCC-CCCCCeeeCCeEEEEEccCC
Q 040506 23 ASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSK-ISTPPERWGPWLYYQYIPEG 101 (365)
Q Consensus 23 ~~~hG~~~~DpY~WLed~~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~-~~~~p~~~g~~~Y~~~~~~~ 101 (365)
+.-||+++.|||+||||.+++++++||++||++|.++|++. |.+++|+++|+++++.+ +++.|.++|+|+|++|+++.
T Consensus 13 ~~~~~~~~~Dpy~wLEd~~~~~~~~wv~aqN~~T~~~l~~~-p~~~~l~~~~~~~~~~~~ri~~p~~~g~~~y~f~~d~~ 91 (711)
T 4hvt_A 13 DNNKQIFNPKETKFLEEAEGVEALEWAKERTSKTEKALQAM-QEYKQIKKEIETIFYDQRKTPYGVIRKGYVYNFWMDDK 91 (711)
T ss_dssp -------CHHHHGGGGSSSSSHHHHHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHTCTTSCCCCEEETTEEEEEECCSS
T ss_pred cCCCceeeCCCchhhcCCCCHHHHHHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHhccccccCCcEEECCEEEEEEecCC
Confidence 45689999999999999999999999999999999999998 88899999999999765 79999999999999999999
Q ss_pred CccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCC--eEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEE
Q 040506 102 KEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYG--YVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQI 179 (365)
Q Consensus 102 ~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~--~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v 179 (365)
+++++|+|++. +.|+.+.+.||||||+|+|+++.| |+.-|..++||||+++||++|.+|+|+.+++|
T Consensus 92 ~~~gl~rrt~~-----------~~~~~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~ 160 (711)
T 4hvt_A 92 NPQGLWRRTLV-----------DNYSKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFFRE 160 (711)
T ss_dssp CSSCEEEEEEH-----------HHHTSSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEEEE
T ss_pred CCcEEEEEccc-----------hhcccCCCCcEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEEEE
Confidence 99977665443 234456788999999999996533 66666666999999999999999999999999
Q ss_pred EECCCCcccC----------------------------------------------eEEEEECCCCCCCCccEEeeCCCC
Q 040506 180 KDLRNQCIVP----------------------------------------------RVLCTKLGSDSTDDAPIFTEGDSG 213 (365)
Q Consensus 180 ~Dl~tg~~l~----------------------------------------------~v~~h~lGt~~~~d~lvf~e~d~~ 213 (365)
+|++||++++ +||+|++||++++|++||+++++.
T Consensus 161 ~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~ 240 (711)
T 4hvt_A 161 WDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEY 240 (711)
T ss_dssp EETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTS
T ss_pred EECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCc
Confidence 9999986442 799999999999999999999989
Q ss_pred eEEEEEEcCCCcE----EEEEeC-CCcceEEEEEeCC---Cc---eeec--------Cc---------ccc-----CCcE
Q 040506 214 FCVDITSTKDGKF----ITVNSN-SRASSEEGLCDRC---DQ---SISE--------NE---------ECS-----SGDY 260 (365)
Q Consensus 214 ~~~~~~~s~d~~~----l~i~~~-~~~tsev~~~d~~---~~---~~~~--------~~---------~~~-----~~~~ 260 (365)
+++++..+.|++| ++|..+ +..++++|+++.+ ++ ..++ ++ +|. .+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (711)
T 4hvt_A 241 IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAG 320 (711)
T ss_dssp CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCEEEEEETTEEEEECSSCEEETTEEECTT
T ss_pred eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcceEeeeECCEEEEEECcccccccccCCCC
Confidence 9999999999985 677766 3446999999854 21 1111 01 232 2566
Q ss_pred EEEEEecCcCC-----CCCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccccccccchhcCCCccc-c
Q 040506 261 YLARCRAEKLY-----SANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWF-F 334 (365)
Q Consensus 261 ~l~~~~~~~~~-----~~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~-i 334 (365)
.|+.+++.++. ..+|++||+|+++..|+++.+++++|++.++++|.++|.++++.++. | .... +
T Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~-------~---~~~~~i 390 (711)
T 4hvt_A 321 SLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKVVTFTLENEQ-------W---TKPVVL 390 (711)
T ss_dssp CEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEEEEECEETTE-------E---CCCEEE
T ss_pred eEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCCCc-------e---EEEecc
Confidence 78888887642 46899999999999999999999999999999999999999986442 2 1234 7
Q ss_pred CCCCCeeeeecCCCCCCCCCEEEEEEeccCC
Q 040506 335 PLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV 365 (365)
Q Consensus 335 ~~p~~~~~~~~~~~~~~~s~~~~~~~sS~~~ 365 (365)
++|+.+ ++...+. ..+++.+++.++|+++
T Consensus 391 ~lp~~~-~~~~~~~-~~~~~~~~~~~ss~~~ 419 (711)
T 4hvt_A 391 KLPYQN-AIFGMSS-YEEEEEALITIENSIV 419 (711)
T ss_dssp CCCSTT-CEEEEEC-CTTCSCEEEEEECSSS
T ss_pred CCCCCe-EEEEEee-cCcCCEEEEEEecCCC
Confidence 888654 3443333 3678899999999874
No 4
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=100.00 E-value=1.4e-45 Score=382.52 Aligned_cols=322 Identities=18% Similarity=0.235 Sum_probs=271.6
Q ss_pred CCCCCCCCCeEEccCCCeeecccccccCCCChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCCeeeCC
Q 040506 12 PPPVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGP 91 (365)
Q Consensus 12 ~~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p~~~g~ 91 (365)
.||+|+|.|+++++||+++.|||+||||.++|+|++||++||+||+++|+++ +++++|+++|+++++.++.+.|.++|+
T Consensus 2 ~~p~~~~~~~~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~en~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~~dG~ 80 (695)
T 2bkl_A 2 SYPATRAEQVVDTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKF-PGREALAARFKELFYTDSVSTPSRRNG 80 (695)
T ss_dssp CCSCCCCCCCEEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHSCCEECCCEEETT
T ss_pred CCCCCCCCCeeeeeCCcEEecCChHhcCCCCHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHhhccccCCCCEEECC
Confidence 5899999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred eEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCC
Q 040506 92 WLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSG 171 (365)
Q Consensus 92 ~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G 171 (365)
++||+++.++++++++||+... .+.+++|+|+|++++++. ..++..++||||++|||+.+.+|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~l~d~~~~a~~~~-~~~~~~~~SPDG~~la~~~~~~G 143 (695)
T 2bkl_A 81 RFFYVRTHKDKEKAILYWRQGE----------------SGQEKVLLDPNGWSKDGT-VSLGTWAVSWDGKKVAFAQKPNA 143 (695)
T ss_dssp EEEEEEECTTCSSCEEEEEEST----------------TSCCEEEECGGGSSSSSC-EEEEEEEECTTSSEEEEEEEETT
T ss_pred EEEEEEEcCCCeEEEEEEEcCC----------------CCCcEEEEchHHhccCCC-EEEEEEEECCCCCEEEEEECCCC
Confidence 9999999999999999998643 256899999999998854 77888999999999999999999
Q ss_pred CeEEEEEEEECCCCccc-C---------------------------e-------------EEEEECCCCCCCCccEEeeC
Q 040506 172 DEQFMLQIKDLRNQCIV-P---------------------------R-------------VLCTKLGSDSTDDAPIFTEG 210 (365)
Q Consensus 172 ~e~~~l~v~Dl~tg~~l-~---------------------------~-------------v~~h~lGt~~~~d~lvf~e~ 210 (365)
+|+++|+|+|++||+.+ . . ||+|++|+++.++++||+++
T Consensus 144 ~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~ 223 (695)
T 2bkl_A 144 ADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT 223 (695)
T ss_dssp CSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred CceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence 99999999999999877 2 2 99999999988889999987
Q ss_pred CC-CeEEEEEEcCCCcEEEEEeCCC-cceEEEEEeCCC---ceeec-----------Cc------cccCCcEEEEEEecC
Q 040506 211 DS-GFCVDITSTKDGKFITVNSNSR-ASSEEGLCDRCD---QSISE-----------NE------ECSSGDYYLARCRAE 268 (365)
Q Consensus 211 d~-~~~~~~~~s~d~~~l~i~~~~~-~tsev~~~d~~~---~~~~~-----------~~------~~~~~~~~l~~~~~~ 268 (365)
+. .+..++..|+||++|++.++.+ .++++|+++... +.+.. ++ +++++++.|+.+++.
T Consensus 224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~ 303 (695)
T 2bkl_A 224 GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPA 303 (695)
T ss_dssp CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCC
Confidence 65 4677888999999999998877 578999997432 11211 11 122345666677776
Q ss_pred cCCCCCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccccccccchhcCCCccccCCCCCeeeeecCCC
Q 040506 269 KLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSN 348 (365)
Q Consensus 269 ~~~~~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~ 348 (365)
++...+|++|+++.++..|+++.+++++|++.+++++.++|++++++++. ...+.+|+.+++..+..+
T Consensus 304 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~------------~~~l~~~~~~~v~~~~~s 371 (695)
T 2bkl_A 304 KPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKP------------VRTVQLPGVGAASNLMGL 371 (695)
T ss_dssp BCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCE------------EEECCCSSSSEECCCBSC
T ss_pred CCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCe------------eEEecCCCCeEEEEeecC
Confidence 55545699999988677899999999999999999999999999986432 245778866655555444
Q ss_pred CCCCCCEEEEEEeccCC
Q 040506 349 HDFMSSVYRAVLSSPVV 365 (365)
Q Consensus 349 ~~~~s~~~~~~~sS~~~ 365 (365)
.+++.++|+++|+++
T Consensus 372 --~d~~~l~~~~ss~~~ 386 (695)
T 2bkl_A 372 --EDLDDAYYVFTSFTT 386 (695)
T ss_dssp --TTCSEEEEEEEETTE
T ss_pred --CCCCEEEEEEcCCCC
Confidence 357899999999863
No 5
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=100.00 E-value=9.2e-44 Score=369.65 Aligned_cols=323 Identities=15% Similarity=0.179 Sum_probs=268.4
Q ss_pred CCCCCCCCCC-eEEccCCCeeecccccccCCCChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCCeee
Q 040506 11 PPPPVPKKIP-YEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERW 89 (365)
Q Consensus 11 ~~~P~a~~~~-~~~~~hG~~~~DpY~WLed~~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p~~~ 89 (365)
+.||+|+|.| +++++||+++.|||+||||.++|+|++||++||++|+++|+++ +++++|+++|+++++.++.+.|.+.
T Consensus 4 ~~~p~~~~~~~~~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~en~~~~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~~d 82 (710)
T 2xdw_A 4 FQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQC-PIRGLYKERMTELYDYPKYSCHFKK 82 (710)
T ss_dssp SCCCCCCCCTTCEEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHHS-THHHHHHHHHHHHHCSCEECCCEEE
T ss_pred CCCCCCCCCCCeeeeeCCcEEccCChhhcCCCCHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHhhccccCCCCEEE
Confidence 5689999999 9999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcC
Q 040506 90 GPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDT 169 (365)
Q Consensus 90 g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~ 169 (365)
|+|+||+++.++++++++||+... .+.+++|||+|+|++++. ..++..++||||++|||+.+.
T Consensus 83 G~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~lld~~~l~~~~~-~~~~~~~~SPDg~~la~~~~~ 145 (710)
T 2xdw_A 83 GKRYFYFYNTGLQNQRVLYVQDSL----------------EGEARVFLDPNILSDDGT-VALRGYAFSEDGEYFAYGLSA 145 (710)
T ss_dssp TTEEEEEEECSSCSSCEEEEESST----------------TSCCEEEECGGGGCTTSC-EEEEEEEECTTSSEEEEEEEE
T ss_pred CCEEEEEEEcCCceEEEEEEEcCC----------------CCCcEEEECHHHhccCCC-EEEEEEEECCCCCEEEEEEcC
Confidence 999999999999999999998643 256799999999998744 478889999999999999999
Q ss_pred CCCeEEEEEEEECCCCcccC---------------------------e----------------EEEEECCCCCCCCccE
Q 040506 170 SGDEQFMLQIKDLRNQCIVP---------------------------R----------------VLCTKLGSDSTDDAPI 206 (365)
Q Consensus 170 ~G~e~~~l~v~Dl~tg~~l~---------------------------~----------------v~~h~lGt~~~~d~lv 206 (365)
+|+++++|+|+|++||+.+. . ||+|++|+++.++++|
T Consensus 146 ~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v 225 (710)
T 2xdw_A 146 SGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC 225 (710)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE
T ss_pred CCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE
Confidence 99999999999999997653 3 9999999998888999
Q ss_pred EeeCC-CCeEEEEEEcCCCcEEEEEeCCCc--ceEEEEEeCC-------C----ceeec-----------Cc-------c
Q 040506 207 FTEGD-SGFCVDITSTKDGKFITVNSNSRA--SSEEGLCDRC-------D----QSISE-----------NE-------E 254 (365)
Q Consensus 207 f~e~d-~~~~~~~~~s~d~~~l~i~~~~~~--tsev~~~d~~-------~----~~~~~-----------~~-------~ 254 (365)
|++++ +.+..++..|+||++|++.+.... ++++|++|.. + ..+.. ++ +
T Consensus 226 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 226 AEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTN 305 (710)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEEC
T ss_pred eccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEEC
Confidence 98865 456778889999999999887554 5899999842 1 11111 11 1
Q ss_pred ccCCcEEEEEEecCcCCCCCceEEeCCCCCceEeEEEEe-CCEEEEEEecCCeeeEEEEeCCccccccccchhcCCCccc
Q 040506 255 CSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIF-DGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWF 333 (365)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~-~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~ 333 (365)
.+++++.|+.+++.++....|++|+++.++..|+++.++ +++|++.+++++.++|+++++.++.. ...
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~-----------~~~ 374 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL-----------LKI 374 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE-----------EEE
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE-----------EEe
Confidence 134566777778766544579999998776689999999 89999999999999999999843321 135
Q ss_pred cCCCCCeeeeecCCCCCCCCCEEEEEEeccCC
Q 040506 334 FPLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV 365 (365)
Q Consensus 334 i~~p~~~~~~~~~~~~~~~s~~~~~~~sS~~~ 365 (365)
|.+| .+++..++.+ .+++.++|+++|+++
T Consensus 375 l~~~-~~~v~~~~~s--~d~~~l~~~~ss~~~ 403 (710)
T 2xdw_A 375 FPLE-VGSVVGYSGQ--KKDTEIFYQFTSFLS 403 (710)
T ss_dssp ECCC-SSEEEEEECC--TTCSEEEEEEECSSC
T ss_pred cCCC-CceEEEEecC--CCCCEEEEEEeCCCC
Confidence 6777 4434455444 357899999999874
No 6
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=100.00 E-value=4.6e-43 Score=366.29 Aligned_cols=325 Identities=16% Similarity=0.206 Sum_probs=266.0
Q ss_pred CCCCCCCCCCCeEEccCCCeeecccccccCC--CChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCCe
Q 040506 10 SPPPPVPKKIPYEASAHGLTWQDPYHWMKNT--NDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPE 87 (365)
Q Consensus 10 ~~~~P~a~~~~~~~~~hG~~~~DpY~WLed~--~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p~ 87 (365)
.+.||+|+|.|+++++||+++.|||+||||. ++|+|++||++||+||+++|+++ +++++|+++|+++++.++.+.|.
T Consensus 37 ~~~~p~~~~~~~~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~aen~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~ 115 (741)
T 1yr2_A 37 LPPYPASPQVPLVEDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQL-PERAALEKRMKALIDYERFGLPQ 115 (741)
T ss_dssp -CCCCCCCCCCCEEEETTEEEECTTGGGGSCTTTCHHHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHSCCCEECCCE
T ss_pred cCCCCCCCCCCeeeeeCCcEEccCcHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhcccccCCCE
Confidence 3568999999999999999999999999998 89999999999999999999999 99999999999999999999999
Q ss_pred eeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEE
Q 040506 88 RWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTI 167 (365)
Q Consensus 88 ~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~ 167 (365)
++|+|+||+++.++++++++||+.... .+.+.+++|||+|+|++++ ...++..++||||++|||+.
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~lld~~~l~~~~-~~~~~~~~~SPDG~~la~~~ 181 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADA-------------PVGTKGRVLLDPNTWAKDG-ATALDAWAASDDGRLLAYSV 181 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTS-------------CTTCCCEEEECGGGCC-----EEEEEEEECTTSSEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCc-------------cCCCCCEEEECHHHhccCC-CEEEEeEEECCCCCEEEEEE
Confidence 999999999999999999999986420 0025689999999999874 46788899999999999999
Q ss_pred cCCCCeEEEEEEEECCCCcccC----------------------------------------eEEEEECCCCCCCCccEE
Q 040506 168 DTSGDEQFMLQIKDLRNQCIVP----------------------------------------RVLCTKLGSDSTDDAPIF 207 (365)
Q Consensus 168 d~~G~e~~~l~v~Dl~tg~~l~----------------------------------------~v~~h~lGt~~~~d~lvf 207 (365)
+.+|+|+++|+|+|++||+.+. +||+|++|+++.++++||
T Consensus 182 ~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~ 261 (741)
T 1yr2_A 182 QDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF 261 (741)
T ss_dssp EETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE
T ss_pred cCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe
Confidence 9999999999999999997543 189999999988889999
Q ss_pred eeCCCC-eEEEEEEcCCCcEEEEEeCCC--cceEEEEEeCCC---c---eeec-----------Cc-------cccCCcE
Q 040506 208 TEGDSG-FCVDITSTKDGKFITVNSNSR--ASSEEGLCDRCD---Q---SISE-----------NE-------ECSSGDY 260 (365)
Q Consensus 208 ~e~d~~-~~~~~~~s~d~~~l~i~~~~~--~tsev~~~d~~~---~---~~~~-----------~~-------~~~~~~~ 260 (365)
++++.+ +..++..|+||++|++.+..+ .++++|++|.+. + .+.. ++ +.+++++
T Consensus 262 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~ 341 (741)
T 1yr2_A 262 ATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLK 341 (741)
T ss_dssp CCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTC
T ss_pred ccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCC
Confidence 987653 677888999999999988776 358999998421 1 1111 11 1134566
Q ss_pred EEEEEecCcCCCCCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccccccccchhcCCCccccCCCCCe
Q 040506 261 YLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSS 340 (365)
Q Consensus 261 ~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~i~~p~~~ 340 (365)
.|+.+++.++. ..|++|+++.++ .|+++.+++++|++.+++++.++|++++++++. ...+.+|+.+
T Consensus 342 ~l~~~d~~~~~-~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~------------~~~l~~~~~~ 407 (741)
T 1yr2_A 342 KIVRVDLSGST-PRFDTVVPESKD-NLESVGIAGNRLFASYIHDAKSQVLAFDLDGKP------------AGAVSLPGIG 407 (741)
T ss_dssp EEEEEECSSSS-CEEEEEECCCSS-EEEEEEEEBTEEEEEEEETTEEEEEEEETTSCE------------EEECBCSSSC
T ss_pred EEEEEeCCCCc-cccEEEecCCCC-eEEEEEEECCEEEEEEEECCEEEEEEEeCCCCc------------eeeccCCCCe
Confidence 77777776543 579999977654 689999999999999999999999999986432 2457777666
Q ss_pred eeeecCCCCCCCCCEEEEEEeccCC
Q 040506 341 CSIVPGSNHDFMSSVYRAVLSSPVV 365 (365)
Q Consensus 341 ~~~~~~~~~~~~s~~~~~~~sS~~~ 365 (365)
++..++.+ .+++.++|+|+|+++
T Consensus 408 ~v~~~~~s--~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 408 SASGLSGR--PGDRHAYLSFSSFTQ 430 (741)
T ss_dssp EEEEEECC--BTCSCEEEEEEETTE
T ss_pred EEEEeecC--CCCCEEEEEEcCCCC
Confidence 55555444 357899999999863
No 7
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=97.71 E-value=0.0053 Score=58.75 Aligned_cols=155 Identities=15% Similarity=0.065 Sum_probs=91.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC------------------------------eEEEEECCCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP------------------------------RVLCTKLGSDS 200 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~------------------------------~v~~h~lGt~~ 200 (365)
+...++||||++|||+-..+|. .+|+++|+++|+... .||.+.+.+..
T Consensus 181 v~~~~~Spdg~~la~~s~~~~~--~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSS--CEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred ceeeEEcCCCCEEEEEEecCCC--cEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 3456899999999999876553 579999999986532 35555554432
Q ss_pred CCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC---ceeecCc------cc--cCC----------c
Q 040506 201 TDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD---QSISENE------EC--SSG----------D 259 (365)
Q Consensus 201 ~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~---~~~~~~~------~~--~~~----------~ 259 (365)
. ..+.. .......+..++||++|+..+.......+|+++... ..+..++ .| +|. .
T Consensus 259 ~--~~l~~--~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 259 I--RQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 334 (415)
T ss_dssp E--EECCC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred E--EeCcC--CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCc
Confidence 1 11111 112334567799999998887655567899998543 1111111 01 122 1
Q ss_pred EEEEEEecCcCCCCCceEEeCCCCCceEeEEEEe--CCEEEEEEecCCeeeEEEEeCCcc
Q 040506 260 YYLARCRAEKLYSANWQNIILPGEDISLQDMDIF--DGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 260 ~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~--~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
..|...++.. ...+.+..+ . .+..+.+. +..|+.....++...|++++++++
T Consensus 335 ~~i~~~d~~~---~~~~~l~~~-~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 335 QHIAKQDLAT---GGVQVLSST-F--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEEEEETTT---CCEEECCCS-S--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred eEEEEEECCC---CCEEEecCC-C--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 2233333322 233433322 2 45566654 567888777888889999998754
No 8
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=97.32 E-value=0.007 Score=61.08 Aligned_cols=147 Identities=12% Similarity=0.143 Sum_probs=86.6
Q ss_pred EEEeeEEeCCCCCEEEEEEcCC-----CCeEEEEEEEECCC------CcccCeEEEEECCCCCCCCccEEeeCCCCeEEE
Q 040506 149 VHVGTCRVSPDHNFLAYTIDTS-----GDEQFMLQIKDLRN------QCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVD 217 (365)
Q Consensus 149 ~~~~~~~~Spdg~~la~~~d~~-----G~e~~~l~v~Dl~t------g~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~ 217 (365)
......++||||++|||+.... +....+|+++|+.+ |+. +.+.+ ....+...
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------~~l~~-~~~~~~~~ 192 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV----------------RELSD-DAHRFVTG 192 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS----------------EESSC-SCSSEECC
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce----------------eEEEe-cCCCcccC
Confidence 3455678999999999987531 14457888889887 543 11210 12234455
Q ss_pred EEEcCCCcEEEEEeCCC-----cceEEEEEeCC-C------ceeec-Cc------cc--cCCcEEE----------EEEe
Q 040506 218 ITSTKDGKFITVNSNSR-----ASSEEGLCDRC-D------QSISE-NE------EC--SSGDYYL----------ARCR 266 (365)
Q Consensus 218 ~~~s~d~~~l~i~~~~~-----~tsev~~~d~~-~------~~~~~-~~------~~--~~~~~~l----------~~~~ 266 (365)
+..|+||++|+..+... ..++||+++.+ . ..+.. +. .| +|. +++ ...+
T Consensus 193 ~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 193 PRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVD 271 (662)
T ss_dssp CEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEEC
T ss_pred ceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEE
Confidence 67899999998777554 23789999854 1 11221 11 12 222 332 2222
Q ss_pred cCcCCCCCceEEeCCCCCce-------EeEEEEe-CCEEEEEEecCCeeeEEEEeCCcc
Q 040506 267 AEKLYSANWQNIILPGEDIS-------LQDMDIF-DGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 267 ~~~~~~~~w~~vi~~~~~~~-------l~~v~~~-~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
+. ...++.+++...+.. +..+.+. ++.+++...+ +..+|+++++.++
T Consensus 272 ~~---~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 272 PA---TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp TT---TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred CC---CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 21 234555554332210 3456665 5778888888 8899999998654
No 9
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.03 E-value=0.008 Score=55.08 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=44.0
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
...++||||++|||....+|+....|+++|+.+|+.. .+...+. ...+..|+||++|++.+
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~----------------~l~~~~~---~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK----------------KILEAKN---IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE----------------EEEEESE---EEEEEECTTSSEEEEEE
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE----------------EEEcCCC---ccceeECCCCCEEEEEE
Confidence 3468999999999998877667888999999988641 1222211 22356688988887765
Q ss_pred C
Q 040506 232 N 232 (365)
Q Consensus 232 ~ 232 (365)
.
T Consensus 123 ~ 123 (347)
T 2gop_A 123 F 123 (347)
T ss_dssp E
T ss_pred c
Confidence 3
No 10
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.84 E-value=0.092 Score=45.81 Aligned_cols=84 Identities=15% Similarity=0.018 Sum_probs=52.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC-CcccC---------------------------------eEEEEEC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN-QCIVP---------------------------------RVLCTKL 196 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t-g~~l~---------------------------------~v~~h~l 196 (365)
+..+++||||++||++.+ | .|+++|+.+ ++... +||...+
T Consensus 44 v~~~~~spdg~~l~~~~~--~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNSE--G----LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp CEEEEECTTSSEEEEEET--T----EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred eEeeEECCCCCEEEEEcC--C----eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 345679999999999742 2 799999999 75421 3444444
Q ss_pred CCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCC
Q 040506 197 GSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 197 Gt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~ 245 (365)
.+.. ... +.... . ...+..++||++|++......+..+|.++..
T Consensus 118 ~~~~--~~~-~~~~~-~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 118 TGGT--PRL-MTKNL-P-SYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp TCCC--CEE-CCSSS-S-EEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCCc--eEE-eecCC-C-ccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 3321 111 11111 1 3335679999999876655555688888754
No 11
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=96.62 E-value=0.33 Score=49.07 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=48.4
Q ss_pred eEEeCCCCCEEEEEEcCCCC-----------------------------eEEEEEEEECCCCcccCeEEEEECCCCCCCC
Q 040506 153 TCRVSPDHNFLAYTIDTSGD-----------------------------EQFMLQIKDLRNQCIVPRVLCTKLGSDSTDD 203 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~-----------------------------e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d 203 (365)
.+.+||||++|||+...++. ...+|+++|+.+++.. ..+....
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~-----~~l~~~~--- 248 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD-----LEMMPPD--- 248 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC-----EECCCCC---
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee-----EEeeCCc---
Confidence 47899999999998754321 2346677777666521 1111100
Q ss_pred ccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCc-ceEEEEEeCC
Q 040506 204 APIFTEGDSGFCVDITSTKDGKFITVNSNSRA-SSEEGLCDRC 245 (365)
Q Consensus 204 ~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~-tsev~~~d~~ 245 (365)
. ++. .......+..|+||++|+...+... ...+++.|..
T Consensus 249 ~-~~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 288 (723)
T 1xfd_A 249 D-PRM--REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT 288 (723)
T ss_dssp C-GGG--SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred c-CCC--ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence 0 000 1123345778999998877666543 3788988854
No 12
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=96.45 E-value=0.17 Score=46.65 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=46.0
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCCCCCcc
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDSTDDAP 205 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~~~d~l 205 (365)
.++||||++|||+.+.+|. ..|+++|+++|+... .||++.+.+. +...
T Consensus 41 ~~~SpDg~~l~~~~~~~g~--~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g--~~~~ 116 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGP--WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL--EENV 116 (388)
T ss_dssp CCBCTTSCEEEEEECTTSS--CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC--CEEE
T ss_pred ccCCCCCCEEEEEEcCCCC--ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC--ccee
Confidence 4699999999999886663 468899998876421 3566666543 2344
Q ss_pred EEeeCCCCeE--EEEEEcCCCcEEEEE
Q 040506 206 IFTEGDSGFC--VDITSTKDGKFITVN 230 (365)
Q Consensus 206 vf~e~d~~~~--~~~~~s~d~~~l~i~ 230 (365)
++..+. .+. .....++|+++++..
T Consensus 117 ~~~~~~-~~~~~~~~~~~~dg~~l~~~ 142 (388)
T 3pe7_A 117 VYQVPA-EWVGYGTWVANSDCTKLVGI 142 (388)
T ss_dssp EEECCT-TEEEEEEEEECTTSSEEEEE
T ss_pred eeechh-hcccccceeECCCCCeeccc
Confidence 555433 222 112348999887643
No 13
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.42 E-value=0.022 Score=52.76 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=26.5
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
...++||||++|||+.+.+|.. .|+++|+++|+.
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~--~l~~~d~~~~~~ 72 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNR--NYYLLNLETQQA 72 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSC--EEEEEETTTTEE
T ss_pred ecCcCCCCCCEEEEEEecCCCc--eEEEEECCCCcE
Confidence 3457899999999998876655 468889888753
No 14
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=96.35 E-value=0.076 Score=54.11 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=31.6
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+..+++ |||++|+++....++...+|+++|+.+|+.
T Consensus 288 ~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~ 324 (741)
T 2ecf_A 288 YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ 324 (741)
T ss_dssp EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence 4556788 999999999887778889999999999874
No 15
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.29 E-value=0.071 Score=54.48 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=53.7
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc--ccC------------------------------eEEEEECCCCCC
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC--IVP------------------------------RVLCTKLGSDST 201 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~--~l~------------------------------~v~~h~lGt~~~ 201 (365)
..+||||++|+++.+.++.. ..|+++|+.++. +.. +|+...+.+...
T Consensus 239 ~~~SpDg~~l~~~~~~~~~~-~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 239 ATVTEDDRFLLISAANSTSG-NRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp EEECTTSCEEEEEEESSSSC-CEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred EEEcCCCCEEEEEEccCCCC-cEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 45899999999998865543 578999998773 221 344444443321
Q ss_pred CC-ccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC
Q 040506 202 DD-APIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD 246 (365)
Q Consensus 202 ~d-~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~ 246 (365)
.. +.+-.+.+ .. + ..++++++|++.......+.|++++.++
T Consensus 318 ~~~~~l~~~~~-~~-~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 318 AHWRDLIPERQ-QV-L--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp GGCEEEECCCS-SC-E--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred cccEEEecCCC-CE-E--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 10 11222211 11 2 5677888888777666667888887543
No 16
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=96.28 E-value=0.39 Score=48.06 Aligned_cols=147 Identities=13% Similarity=0.075 Sum_probs=78.8
Q ss_pred EeeEEeCCCCCEEEEEEcCCCC---eEEEEEEEECC-CCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGD---EQFMLQIKDLR-NQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKF 226 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~---e~~~l~v~Dl~-tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~ 226 (365)
+....+||||++|||+...... +..+|+++|+. +|+.. +-+.+..... .....+..|+||+
T Consensus 190 ~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-------------~~~~l~~~~~-~~~~~~~~spdg~- 254 (662)
T 3azo_A 190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-------------DTRTLLGGPE-EAIAQAEWAPDGS- 254 (662)
T ss_dssp ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-------------EEEEEEEETT-BCEEEEEECTTSC-
T ss_pred ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc-------------ccEEeCCCCC-ceEcceEECCCCe-
Confidence 3456899999999998754321 34679999998 57320 0012222211 1223456799999
Q ss_pred EEEEeCCCcceEEEEEeCCC---ceeec-Cc-----cc----------cCCcEE---------EEEEecCcCCCCCceEE
Q 040506 227 ITVNSNSRASSEEGLCDRCD---QSISE-NE-----EC----------SSGDYY---------LARCRAEKLYSANWQNI 278 (365)
Q Consensus 227 l~i~~~~~~tsev~~~d~~~---~~~~~-~~-----~~----------~~~~~~---------l~~~~~~~~~~~~w~~v 278 (365)
+++.++...+..||.++.+. +.+.. +. .| .++.+. |..+++.. ...+.|
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---~~~~~l 331 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPES---GELVDA 331 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTT---TEEEEC
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCC---CcEEEe
Confidence 44444444446899988532 11111 10 01 122222 22223221 223444
Q ss_pred eCCCCCceEeEE-EEeCCEEEEEEecCC-eeeEEEEeCCcc
Q 040506 279 ILPGEDISLQDM-DIFDGHLVLFVSKKG-VPMLCSIDLSIN 317 (365)
Q Consensus 279 i~~~~~~~l~~v-~~~~~~lvl~~~~~g-~~~l~v~~l~~~ 317 (365)
..+ ...+..+ ...++.+++...... ..+|+++++.++
T Consensus 332 ~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 332 AGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp CSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred cCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 323 2346666 677787777665544 458888887654
No 17
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.27 E-value=0.19 Score=50.82 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=49.2
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeE---EEEEEcC--CCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFC---VDITSTK--DGK 225 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~---~~~~~s~--d~~ 225 (365)
+..+.+||||++|+++....+....+|+++|+++|+.+.. ++.+....+. ..+..++ ||+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~---------------~~~~~~~~~~~~~~~~~~sp~~dg~ 324 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT---------------LFVETDKHYVEPLHPLTFLPGSNNQ 324 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE---------------EEEEECSSCCCCCSCCEECTTCSSE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE---------------EEEccCCCeECccCCceeecCCCCE
Confidence 4567899999999998776777888999999999842211 2211111110 1245688 999
Q ss_pred EEEEEeCCCcceEEEEEe
Q 040506 226 FITVNSNSRASSEEGLCD 243 (365)
Q Consensus 226 ~l~i~~~~~~tsev~~~d 243 (365)
+++.. +...+..+|.++
T Consensus 325 ~l~~~-~~~g~~~l~~~~ 341 (706)
T 2z3z_A 325 FIWQS-RRDGWNHLYLYD 341 (706)
T ss_dssp EEEEE-CTTSSCEEEEEE
T ss_pred EEEEE-ccCCccEEEEEE
Confidence 76544 333346677665
No 18
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=96.26 E-value=0.097 Score=53.22 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=38.9
Q ss_pred CceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCC----CeEEEEEEEECCCCcc
Q 040506 131 GKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSG----DEQFMLQIKDLRNQCI 187 (365)
Q Consensus 131 ~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G----~e~~~l~v~Dl~tg~~ 187 (365)
+..+.+++....+.. + +..+++||||++||++.+.+| +...+|+++|+++|+.
T Consensus 46 g~~~~~~~~~~~~~~-~---~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 46 GQSYTILSNRTMKSV-N---ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp CCEEEEECHHHHHTT-T---CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CcEEEEEcccccccc-c---eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 456777887655321 1 345679999999999987544 4567899999999976
No 19
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.04 E-value=0.16 Score=51.35 Aligned_cols=50 Identities=8% Similarity=-0.033 Sum_probs=32.5
Q ss_pred Cce--EEEeccchhcc----CCCe-----EEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 131 GKE--EILLDWNEIAE----KYGY-----VHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 131 ~~~--evllD~n~la~----~~~~-----~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+.. ++|++.+.++. ..+. ..+..+++||| ++++|+.+ .+|+++|+.+|+.
T Consensus 53 g~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~------~~i~~~d~~~~~~ 113 (706)
T 2z3z_A 53 GKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQ------GGLVGFDMLARKV 113 (706)
T ss_dssp -----CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEET------TEEEEEETTTTEE
T ss_pred CcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEEC------CEEEEEECCCCce
Confidence 445 78888886631 1111 23556789999 88999865 4799999988864
No 20
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=96.02 E-value=0.036 Score=51.37 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=31.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+....+||||++|||.....|.....|+++|+++|+.
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred cccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 4456799999999998887777777899999999874
No 21
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.96 E-value=0.97 Score=41.48 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=76.8
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCCCCC
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDSTDD 203 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~~~d 203 (365)
..+++||||++++++-+.+| +|+++|+.+|+.+. .|+.+.+.+.. -
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~----~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--~ 108 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSN----DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--V 108 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--E
T ss_pred ceEEECCCCCEEEEECCCCC----eEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCe--E
Confidence 45678888888877654443 68888888876542 33344433221 0
Q ss_pred ccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC-ce--eec-Cc-----cc--cCCcEEEE--------E
Q 040506 204 APIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD-QS--ISE-NE-----EC--SSGDYYLA--------R 264 (365)
Q Consensus 204 ~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~-~~--~~~-~~-----~~--~~~~~~l~--------~ 264 (365)
...+... ..-..+..++||++|++.... ...|++.|... +. .+. +. .+ ++..+++. .
T Consensus 109 ~~~~~~~--~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~ 184 (391)
T 1l0q_A 109 AGTVKTG--KSPLGLALSPDGKKLYVTNNG--DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184 (391)
T ss_dssp EEEEECS--SSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEeCC--CCcceEEECCCCCEEEEEeCC--CCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 1122211 122346679999998776533 34677777543 11 111 11 01 12222211 1
Q ss_pred EecCcCCCCCceEEeCCCCCceEeEEEEe--CCEEEEEEecCCeeeEEEEeCCcc
Q 040506 265 CRAEKLYSANWQNIILPGEDISLQDMDIF--DGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 265 ~~~~~~~~~~w~~vi~~~~~~~l~~v~~~--~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
.++.. ......+... ..+..+.+. +++|++.........|.++++.++
T Consensus 185 ~d~~~---~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 185 IDTVT---NSVIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EETTT---TEEEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EECCC---CeEEEEEecC--CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 12211 1222233332 245566554 456776665445678999998654
No 22
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.79 E-value=0.057 Score=55.06 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+..+++||||++|+++.. .+|+++|+.+|
T Consensus 111 v~~~~~SpDg~~l~~~~~------~~i~~~d~~~~ 139 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG------GELYLYDLKQE 139 (741)
T ss_dssp SCCCEECTTSSEEEEEET------TEEEEEESSSC
T ss_pred cceeEECCCCCEEEEEeC------CcEEEEECCCC
Confidence 456789999999999876 47999999998
No 23
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=95.65 E-value=0.31 Score=49.66 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=25.9
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
...+||||++|+++...+++....|+++|+.+
T Consensus 237 ~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 237 GAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp EEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 35799999999999875544367899999987
No 24
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.61 E-value=1.6 Score=41.25 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=84.3
Q ss_pred CCCCEEEEEEcCCCCe-EEEEEEEECCCCcccC------------------------------eEEEEECCCCCCCCccE
Q 040506 158 PDHNFLAYTIDTSGDE-QFMLQIKDLRNQCIVP------------------------------RVLCTKLGSDSTDDAPI 206 (365)
Q Consensus 158 pdg~~la~~~d~~G~e-~~~l~v~Dl~tg~~l~------------------------------~v~~h~lGt~~~~d~lv 206 (365)
+.+.++||+....|++ ..+|+++|+.++.... .|+.+.+.+.. -..+
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--~~~l 218 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQV 218 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--EEEe
Confidence 4578888887754432 2789999997654221 35556654432 1122
Q ss_pred EeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC-c--eeecCc------cc--cCCcE----------EEEEE
Q 040506 207 FTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD-Q--SISENE------EC--SSGDY----------YLARC 265 (365)
Q Consensus 207 f~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~-~--~~~~~~------~~--~~~~~----------~l~~~ 265 (365)
... ......+..++||++|++.........||+.|... + .+..+. .| ++..+ .|...
T Consensus 219 ~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 219 ASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp ECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 222 12334567899999998776655567899998543 1 111111 11 12111 22222
Q ss_pred ecCcCCCCCceEEeCCCCCceEeEEEE--eCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 266 RAEKLYSANWQNIILPGEDISLQDMDI--FDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 266 ~~~~~~~~~w~~vi~~~~~~~l~~v~~--~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
++.. ...+.+..+. ..+..+.+ .+++|+.....++...|.++++.++.
T Consensus 297 d~~~---~~~~~l~~~~--~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 297 NING---GAPQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp ETTS---SCCEECCCSS--SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred ECCC---CCEEEEecCC--CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 3322 1233333222 23445554 45678888888888899999997643
No 25
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=95.21 E-value=0.32 Score=49.32 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=26.9
Q ss_pred eEEeCCCCCEEEEEEcCCC-----------------------------CeEEEEEEEECCCCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSG-----------------------------DEQFMLQIKDLRNQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G-----------------------------~e~~~l~v~Dl~tg~~ 187 (365)
.+++||||++|||+....+ ....+|+++|+.+|+.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~ 236 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY 236 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence 5789999999999765322 2345899999998864
No 26
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=95.16 E-value=0.77 Score=46.95 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=34.8
Q ss_pred CceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCC----CeEEEEEEEECCCCccc
Q 040506 131 GKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSG----DEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 131 ~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G----~e~~~l~v~Dl~tg~~l 188 (365)
+..+++|....+..- . .....+.+||||++||++.+... +-...++++|++||+..
T Consensus 46 ~~~~~~~~~~~~~~~-~-~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~ 105 (740)
T 4a5s_A 46 GNSSVFLENSTFDEF-G-HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (740)
T ss_dssp CCEEEEECTTTTTTC-C-SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CceEEEEechhhhhh-c-ccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence 445667765443211 0 11123678999999999876321 23367889999998754
No 27
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=95.10 E-value=3.5 Score=43.87 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=79.1
Q ss_pred EeeEEeCCCCCEEEEEEcCC-CCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTS-GDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~-G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
+...++||||++|||+.... .....+|+++|+.+|+. .+|-... . -+ . ........+..|+||+ ++.
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~------~~lt~~~-~--~~-~-~~~~~~~~~~~SpDg~-ll~ 122 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI------KRITYFS-G--KS-T-GRRMFTDVAGFDPDGN-LII 122 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE------EECCCCC-E--EE-E-TTEECSEEEEECTTCC-EEE
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe------EEcccCC-C--cc-c-ccccccccccCCCCCE-EEE
Confidence 45678999999999987641 12346899999998863 2221110 0 00 0 0000013467799999 444
Q ss_pred EeCCC----cceEEEEEeCCC---ceeecC-c---cccCCcEEEEEEecC-cC------------------CCCCceEEe
Q 040506 230 NSNSR----ASSEEGLCDRCD---QSISEN-E---ECSSGDYYLARCRAE-KL------------------YSANWQNII 279 (365)
Q Consensus 230 ~~~~~----~tsev~~~d~~~---~~~~~~-~---~~~~~~~~l~~~~~~-~~------------------~~~~w~~vi 279 (365)
..+.. .+..+|.++... ..+..+ . .+.. . .++..... .+ .....+.+.
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~ 200 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 200 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc
Confidence 44432 236799888543 111111 0 0111 1 22221100 00 001223332
Q ss_pred CCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCcc
Q 040506 280 LPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 280 ~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
.....+..+.+..+.+++....++..+|+.+++.++
T Consensus 201 --~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~ 236 (1045)
T 1k32_A 201 --DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGK 236 (1045)
T ss_dssp --CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSC
T ss_pred --CCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCC
Confidence 222345566677888887777788888888887543
No 28
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=94.89 E-value=2.1 Score=38.52 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=26.2
Q ss_pred EeeEEeCCCCCEEEEEEcC-----------------CC-----CeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDT-----------------SG-----DEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~-----------------~G-----~e~~~l~v~Dl~tg~~ 187 (365)
+..+.+||||++|||+... .| .....|+++|+.+|+.
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 5667899999999998753 12 2246788888877753
No 29
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.60 E-value=1.6 Score=37.52 Aligned_cols=34 Identities=18% Similarity=0.046 Sum_probs=25.0
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
..+.+||||++|+|+.+..| ...|+.+|+.+++.
T Consensus 132 ~~~~~spdg~~l~~~~~~~~--~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 132 YWHGWSPDGKSFTYCGIRDQ--VFDIYSMDIDSGVE 165 (297)
T ss_dssp EEEEECTTSSEEEEEEEETT--EEEEEEEETTTCCE
T ss_pred cceEECCCCCEEEEEECCCC--ceEEEEEECCCCcc
Confidence 34579999999999877555 35677777777654
No 30
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=94.48 E-value=0.14 Score=50.68 Aligned_cols=75 Identities=11% Similarity=-0.034 Sum_probs=49.4
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
..+.+||||++||++.+.+|. ..+|+++|+++|+.. ++ .. .......+..|+||++|+ .+
T Consensus 153 ~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g~~~------~l----------~~--~~~~~~~~~~SpDG~~l~-~~ 212 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGGLR------VF----------DS--GEGSFSSASISPGMKVTA-GL 212 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETT-EEEEEEEETTTCCCE------EE----------CC--SSCEEEEEEECTTSCEEE-EE
T ss_pred ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCCCCCce------Ee----------ec--CCCccccceECCCCCEEE-Ec
Confidence 356789999999988775544 345999999988741 11 11 112234567899999998 33
Q ss_pred CCCcceEEEEEeCCC
Q 040506 232 NSRASSEEGLCDRCD 246 (365)
Q Consensus 232 ~~~~tsev~~~d~~~ 246 (365)
.......||+.|.+.
T Consensus 213 ~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 213 ETAREARLVTVDPRD 227 (582)
T ss_dssp ECSSCEEEEEECTTT
T ss_pred cCCCeeEEEEEcCCC
Confidence 333346899998653
No 31
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.45 E-value=2.8 Score=38.05 Aligned_cols=184 Identities=9% Similarity=0.113 Sum_probs=97.7
Q ss_pred CCeeeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEE
Q 040506 85 PPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLA 164 (365)
Q Consensus 85 ~p~~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la 164 (365)
.-...|+|+||.-... ...+||.+.. |. ..+.|-| +.+ .-++++|++|.
T Consensus 20 ~~~~~g~~iy~~n~~d---~~~ly~~~~d---------------g~-~~~~l~~--------~~~----~~i~~~g~~Iy 68 (302)
T 3s25_A 20 LFCESDGEVFFSNTND---NGRLYAMNID---------------GS-NIHKLSN--------DTA----MYINADKNYVY 68 (302)
T ss_dssp CEEEETTEEEEEEGGG---TTEEEEEETT---------------SC-SCEEEEE--------EEE----EEEEECSSEEE
T ss_pred EEEEeCCEEEEEeCCC---CceEEEEcCC---------------CC-CCEEccC--------Cce----eeEEEcCCEEE
Confidence 3456899999974432 3468888654 22 2233333 111 23578899999
Q ss_pred EEEcCCCC---------eEEEEEEEECCCCcccC--------------eEEEE-------------ECCCCCCCCccEEe
Q 040506 165 YTIDTSGD---------EQFMLQIKDLRNQCIVP--------------RVLCT-------------KLGSDSTDDAPIFT 208 (365)
Q Consensus 165 ~~~d~~G~---------e~~~l~v~Dl~tg~~l~--------------~v~~h-------------~lGt~~~~d~lvf~ 208 (365)
|+-...|. ..+.|+.+++.+++... .+|+. .+... +-+.|-.
T Consensus 69 y~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs--~~~~lt~ 146 (302)
T 3s25_A 69 YVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE--EKKKIKN 146 (302)
T ss_dssp EEEECC------CCSSCCSEEEEEEETTSCCCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSC--CCEEEES
T ss_pred EEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCC--CeEEEeC
Confidence 98766543 36778889988775321 33332 22211 1122222
Q ss_pred eCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC---c---------eeecCc------cccCCcEEEEEEecCcC
Q 040506 209 EGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD---Q---------SISENE------ECSSGDYYLARCRAEKL 270 (365)
Q Consensus 209 e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~---~---------~~~~~~------~~~~~~~~l~~~~~~~~ 270 (365)
..- ...++++++|+.+.. ....||.++.++ + .+.+.+ ++. ..+.|.++++..
T Consensus 147 ~~~------~~~~~~g~~iy~t~~--g~~~Iy~~~l~g~~~~~l~~~~~~~~~~P~g~~iy~t~~~-~~~~I~~~~ldG- 216 (302)
T 3s25_A 147 HYL------FTCNTSDRYFYYNNP--KNGQLYRYDTASQSEALFYDCNCYKPVVLDDTNVYYMDVN-RDNAIVHVNINN- 216 (302)
T ss_dssp SCC------CCSEEETTEEEEECT--TTCCEEEEETTTTEEEEEECSCEEEEEEEETTEEEEEEGG-GTTEEEEECSSS-
T ss_pred CCc------eEeeEECCEEEEEeC--CCceEEEEECCCCCEEEEeCCCccceeeecCCEEEEEEcC-CCcEEEEEECCC-
Confidence 111 123556777766644 234566666432 1 111111 122 225666766653
Q ss_pred CCCCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 271 YSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 271 ~~~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
.+ +.++.. ..+..+++.+++|+...... ...|..++++|..
T Consensus 217 --~~-~~~Lt~---~~~~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG~~ 257 (302)
T 3s25_A 217 --PN-PVVLTE---ANIEHYNVYGSLIFYQRGGD-NPALCVVKNDGTG 257 (302)
T ss_dssp --CC-CEECSC---SCEEEEEEETTEEEEEECSS-SCEEEEEETTSCC
T ss_pred --CC-eEEEeC---CCcceEEECCCEEEEEECCC-CcEEEEEECCCCc
Confidence 22 333332 23577999999997654333 3899999998643
No 32
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.31 E-value=0.53 Score=43.31 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=26.2
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
..+.+||||++++++-+..| .|+++|+.+++.+
T Consensus 119 ~~~~~s~dg~~l~~~~~~~~----~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 119 LGLALSPDGKKLYVTNNGDK----TVSVINTVTKAVI 151 (391)
T ss_dssp EEEEECTTSSEEEEEETTTT----EEEEEETTTTEEE
T ss_pred ceEEECCCCCEEEEEeCCCC----EEEEEECCCCcEE
Confidence 45679999999988765444 7999999998754
No 33
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=94.23 E-value=1.1 Score=45.78 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=26.7
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
...+||||++|+++...+.+....|+++|+.++
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 456899999999998765444667999999887
No 34
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=93.79 E-value=0.16 Score=51.54 Aligned_cols=78 Identities=6% Similarity=0.040 Sum_probs=48.7
Q ss_pred EEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCe----EEEEEEcCCC
Q 040506 149 VHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGF----CVDITSTKDG 224 (365)
Q Consensus 149 ~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~----~~~~~~s~d~ 224 (365)
..+....+||||+++++..+. +.....|+++|+++|+.. .++.+....+ ...+..|+||
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~-~~~~~~i~~~d~~~g~~~----------------~~~~~~~~~~~~~~~~~~~~spdg 317 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNR-AQNVSILTLCDATTGVCT----------------KKHEDESEAWLHRQNEEPVFSKDG 317 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEET-TSCEEEEEEEETTTCCEE----------------EEEEEECSSCCCCCCCCCEECTTS
T ss_pred ceeEEEEEeCCCeEEEEEEcC-CCCeEEEEEEeCCCCcce----------------EEEEeccCCEEeccCCCceEcCCC
Confidence 345667899999988877664 566788999999998742 1111111111 0124568888
Q ss_pred cEEEEE-eCCCc----ceEEEEEe
Q 040506 225 KFITVN-SNSRA----SSEEGLCD 243 (365)
Q Consensus 225 ~~l~i~-~~~~~----tsev~~~d 243 (365)
++|++. ..... ...+|+++
T Consensus 318 ~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 318 RKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CeEEEEEecccCCCcceeEEEEEe
Confidence 877664 32222 35788887
No 35
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=93.71 E-value=0.19 Score=51.60 Aligned_cols=86 Identities=9% Similarity=-0.040 Sum_probs=52.5
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeE-----EEEEEcCCC
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFC-----VDITSTKDG 224 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~-----~~~~~s~d~ 224 (365)
.+...++||||+.+++.+.. ++...+|+++|++||+.- +. . ..-..++++....+. ..+..|+||
T Consensus 261 ~~~~~~wspdg~~~~~~~~r-~~~~~~i~~~d~~tg~~~---~~-----~-~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 261 YLCDVTWATQERISLQWLRR-IQNYSVMDICDYDESSGR---WN-----C-LVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp EEEEEEEEETTEEEEEEEES-STTEEEEEEEEEETTTTE---EE-----E-CGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred EEEEEEEeCCCeEEEEEeCC-CCCEEEEEEEECCCCccc---cc-----e-eEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 35567899999988888774 555678999999998710 00 0 000123333222111 124569999
Q ss_pred cEEE-EEeCCCcceEEEEEeCC
Q 040506 225 KFIT-VNSNSRASSEEGLCDRC 245 (365)
Q Consensus 225 ~~l~-i~~~~~~tsev~~~d~~ 245 (365)
+.|+ +.+.......||+.+.+
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETT
T ss_pred CEEEEEEEcCCCceEEEEEECC
Confidence 9887 44444445889998854
No 36
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=93.68 E-value=1.1 Score=44.13 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=25.6
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
...++||||++|| +-+..| ..+|+++|+++|+.
T Consensus 198 ~~~~~SpDG~~l~-~~~~~~--~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 198 SSASISPGMKVTA-GLETAR--EARLVTVDPRDGSV 230 (582)
T ss_dssp EEEEECTTSCEEE-EEECSS--CEEEEEECTTTCCE
T ss_pred ccceECCCCCEEE-EccCCC--eeEEEEEcCCCCcE
Confidence 5678999999999 434344 47899999999874
No 37
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.65 E-value=3.6 Score=36.49 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=44.1
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
.+.+||||++++++-...+ .|+++|+++++.. +.....|. . ... .+..++||++|++ ..
T Consensus 44 ~~~~s~dg~~l~~~~~~~~----~i~~~d~~~~~~~--~~~~~~~~------------~-~~~-~~~~s~dg~~l~~-~~ 102 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQ----TLVQIETQLEPPK--VVAIQEGQ------------S-SMA-DVDITPDDQFAVT-VT 102 (331)
T ss_dssp EEEECSSSCEEEEEESTTC----EEEEEECSSSSCE--EEEEEECS------------S-CCC-CEEECTTSSEEEE-CC
T ss_pred eEEEcCCCCEEEEEeCCCC----eEEEEECCCCcee--EEecccCC------------C-Ccc-ceEECCCCCEEEE-ec
Confidence 5789999998777655333 7999999998751 11111111 1 111 1456899999883 22
Q ss_pred CC-cceEEEEEeCCC
Q 040506 233 SR-ASSEEGLCDRCD 246 (365)
Q Consensus 233 ~~-~tsev~~~d~~~ 246 (365)
.. ....++++|...
T Consensus 103 ~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 103 GLNHPFNMQSYSFLK 117 (331)
T ss_dssp CSSSSCEEEEEETTT
T ss_pred CCCCcccEEEEECCC
Confidence 22 223788888543
No 38
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=93.61 E-value=2.7 Score=43.14 Aligned_cols=76 Identities=14% Similarity=0.057 Sum_probs=44.9
Q ss_pred eeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEE
Q 040506 88 RWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTI 167 (365)
Q Consensus 88 ~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~ 167 (365)
..|..+||.+.+.......+|+..... +....++++.. .+.++. ....+||||++|+++.
T Consensus 230 pDg~~l~y~~~d~~~~~~~v~~~~lgt--------------~~~~~~lv~~~----~~~~~~--~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 230 PDHTSLFYVTKDETLRENKVWRHVMGK--------------LQSEDVCLYEE----HNPLFS--AFMYKAADTNTLCIGS 289 (751)
T ss_dssp SSTTEEEEEEECTTCCEEEEEEEETTS--------------CGGGCEEEEEC----CCTTCE--EEEEECTTSSEEEEEE
T ss_pred cCCCEEEEEEECCCCCCCEEEEEECCC--------------CchhcEEEEec----CCCceE--EEEEECCCCCEEEEEe
Confidence 357788888776543323455554321 11112344432 112332 2457999999999998
Q ss_pred cCCCCeEEEEEEEECCCC
Q 040506 168 DTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 168 d~~G~e~~~l~v~Dl~tg 185 (365)
...+ ...|+++|+.++
T Consensus 290 ~~~~--~~~l~~~d~~~~ 305 (751)
T 2xe4_A 290 QSPE--TAEVHLLDLRKG 305 (751)
T ss_dssp ECSS--CEEEEEEESSSC
T ss_pred cCCC--CceEEEEECCCC
Confidence 7443 567999999886
No 39
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=93.47 E-value=0.13 Score=47.81 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=26.1
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+++||||+++|.+- |++..+|+|||+++++.
T Consensus 138 ~v~fSpDg~~la~as---~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 138 LVYISREGTVAAIAS---SKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp EEEECTTSSCEEEEE---SCSSCEEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEEE---CCCCCEEEEeECCCCcE
Confidence 467999999999873 55566899999999874
No 40
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.20 E-value=4.7 Score=36.47 Aligned_cols=144 Identities=9% Similarity=0.048 Sum_probs=77.8
Q ss_pred EeCCCCCEEEEEE-cCCCCeEEEEEEEECCCCcc--c------C----------------eEEEEECCCCCCCCccEEee
Q 040506 155 RVSPDHNFLAYTI-DTSGDEQFMLQIKDLRNQCI--V------P----------------RVLCTKLGSDSTDDAPIFTE 209 (365)
Q Consensus 155 ~~Spdg~~la~~~-d~~G~e~~~l~v~Dl~tg~~--l------~----------------~v~~h~lGt~~~~d~lvf~e 209 (365)
.++++|++|+|+. +..| ...|+..++..... + + +||+..+.+. ..+.|+++
T Consensus 110 ~~s~~g~~Iy~~~~~~~~--~~~Iy~~~~dGs~~~~lt~~~~~~~~~~g~~iy~t~~g~~~Iy~~~l~g~--~~~~l~~~ 185 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQT--ATSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQ--SEALFYDC 185 (302)
T ss_dssp EEEEETTEEEEEEESSSS--CEEEEEEETTSCCCEEEESSCCCCSEEETTEEEEECTTTCCEEEEETTTT--EEEEEECS
T ss_pred EEEEeCCEEEEEeecCCC--CceEEEEECCCCCeEEEeCCCceEeeEECCEEEEEeCCCceEEEEECCCC--CEEEEeCC
Confidence 4667888888876 2223 34577777764321 1 0 5566665433 23455542
Q ss_pred CCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCCC---ceeec--------Ccc---c--cCCcEEEEEEecCcCCCC
Q 040506 210 GDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCD---QSISE--------NEE---C--SSGDYYLARCRAEKLYSA 273 (365)
Q Consensus 210 ~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~---~~~~~--------~~~---~--~~~~~~l~~~~~~~~~~~ 273 (365)
..+. ...|++++|+.+..... ..|+.++.++ +.+.. .+. | ++..-.|.++++.. .
T Consensus 186 ---~~~~--~~~P~g~~iy~t~~~~~-~~I~~~~ldG~~~~~Lt~~~~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG---~ 256 (302)
T 3s25_A 186 ---NCYK--PVVLDDTNVYYMDVNRD-NAIVHVNINNPNPVVLTEANIEHYNVYGSLIFYQRGGDNPALCVVKNDG---T 256 (302)
T ss_dssp ---CEEE--EEEEETTEEEEEEGGGT-TEEEEECSSSCCCEECSCSCEEEEEEETTEEEEEECSSSCEEEEEETTS---C
T ss_pred ---Cccc--eeeecCCEEEEEEcCCC-cEEEEEECCCCCeEEEeCCCcceEEECCCEEEEEECCCCcEEEEEECCC---C
Confidence 2222 24589999887654422 5778777553 11111 110 1 11123444555532 2
Q ss_pred CceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCcc
Q 040506 274 NWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 274 ~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
.-+.|. .. .+..+.+++++|+......+. |..+.+++.
T Consensus 257 ~r~~l~-~~---~~~~i~i~~d~Iy~td~~~~~--i~~~~~dGs 294 (302)
T 3s25_A 257 GFKELA-KG---EFCNINVTSQYVYFTDFVSNK--EYCTSTQNP 294 (302)
T ss_dssp CCEEEE-ES---CEEEEEECSSEEEEEETTTCC--EEEEESSSC
T ss_pred ccEEee-CC---ccceEEEeCCEEEEEECCCCe--EEEEECCCC
Confidence 223343 32 145889999999999876664 777777653
No 41
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=92.94 E-value=2.2 Score=43.16 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=25.4
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
...+||||++|+++...+. ....|+++|..+|+.
T Consensus 231 ~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~ 264 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDF 264 (695)
T ss_dssp EEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSC
T ss_pred EEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCce
Confidence 4579999999999876542 356788888877654
No 42
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.82 E-value=0.49 Score=43.43 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=31.3
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+....+||||++|+|+...+|.....|+++|+.+|+.
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 45567899999999998877776667799999998864
No 43
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=92.14 E-value=0.7 Score=43.40 Aligned_cols=78 Identities=10% Similarity=-0.010 Sum_probs=48.8
Q ss_pred eEEeCCCCCEEEEEEc-----CCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEE
Q 040506 153 TCRVSPDHNFLAYTID-----TSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFI 227 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d-----~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l 227 (365)
.+.+||||+++.++-+ ..|...-+|.|+|+.|++.+ ....+|..... ++-. ++. .+..|+||+++
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv---~~I~v~~~~~~--~~g~--~P~---~ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI---ADIELPDAPRF--SVGP--RVH---IIGNCASSACL 138 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---EEEEETTSCSC--CBSC--CTT---SEEECTTSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE---EEEECCCcccc--ccCC--Ccc---eEEEcCCCCEE
Confidence 4789999999888763 24567788999999999863 33445421100 0111 222 24679999999
Q ss_pred EEEeCCCcceEEEE
Q 040506 228 TVNSNSRASSEEGL 241 (365)
Q Consensus 228 ~i~~~~~~tsev~~ 241 (365)
++.... ..+.+.+
T Consensus 139 yVan~~-~~~~v~V 151 (368)
T 1mda_H 139 LFFLFG-SSAAAGL 151 (368)
T ss_dssp EEEECS-SSCEEEE
T ss_pred EEEccC-CCCeEEE
Confidence 887432 2334455
No 44
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=92.04 E-value=0.51 Score=43.73 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=38.2
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
+..+++||||++||.+-. + .+|+|||+.+|+.+. . +.......-..+..|+||++|+-.
T Consensus 272 V~~~~~Spdg~~lasgs~-D----~~V~iwd~~~~~~~~-----~-----------~~~gH~~~V~~v~fSpdg~~laS~ 330 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASN-D----NSIALVKLKDLSMSK-----I-----------FKQAHSFAITEVTISPDSTYVASV 330 (365)
T ss_dssp EEEEEECTTSCEEEEEET-T----SCEEEEETTTTEEEE-----E-----------ETTSSSSCEEEEEECTTSCEEEEE
T ss_pred eEeEEECCCCCceEEEcC-C----CEEEEEECCCCcEEE-----E-----------ecCcccCCEEEEEECCCCCEEEEE
Confidence 345679999999998754 2 369999999987421 1 101111223357789999987543
No 45
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=91.74 E-value=0.55 Score=50.18 Aligned_cols=73 Identities=16% Similarity=0.085 Sum_probs=48.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
+..+++||||++||++-.. | +|+++|+++|+.. .+....... ...+..|+||++|+..
T Consensus 381 ~~~~~~SpDG~~la~~~~~-~----~v~~~d~~tg~~~----------------~~~~~~~~~-v~~~~~SpDG~~la~~ 438 (1045)
T 1k32_A 381 VFAMGVDRNGKFAVVANDR-F----EIMTVDLETGKPT----------------VIERSREAM-ITDFTISDNSRFIAYG 438 (1045)
T ss_dssp EEEEEECTTSSEEEEEETT-S----EEEEEETTTCCEE----------------EEEECSSSC-CCCEEECTTSCEEEEE
T ss_pred eeeeEECCCCCEEEEECCC-C----eEEEEECCCCceE----------------EeccCCCCC-ccceEECCCCCeEEEE
Confidence 4457899999999988653 2 7999999998741 122111111 1235679999998776
Q ss_pred eCCC-------cceEEEEEeCC
Q 040506 231 SNSR-------ASSEEGLCDRC 245 (365)
Q Consensus 231 ~~~~-------~tsev~~~d~~ 245 (365)
.... ....+++.|..
T Consensus 439 ~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 439 FPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEECSSTTCSCCEEEEEEEETT
T ss_pred ecCccccccCCCCCeEEEEECC
Confidence 6543 23688888854
No 46
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=91.73 E-value=1.6 Score=38.96 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=46.0
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
..+.+||||++++++-..+| .|+++|+++++.+..+.....+ ... ..+..++||++|++..
T Consensus 179 ~~~~~spdg~~l~v~~~~~~----~v~v~d~~~~~~~~~~~~~~~~-------------~~~--~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 179 FNITFTPDGNFAFVANLIGN----SIGILETQNPENITLLNAVGTN-------------NLP--GTIVVSRDGSTVYVLT 239 (331)
T ss_dssp EEEEECTTSSEEEEEETTTT----EEEEEECSSTTSCEEEEEEECS-------------SCC--CCEEECTTSSEEEEEC
T ss_pred cceEECCCCCEEEEEeCCCC----eEEEEECCCCcccceeeeccCC-------------CCC--ceEEECCCCCEEEEEE
Confidence 45679999998877765433 5899999998752212222222 111 1356799999988764
Q ss_pred CCCcceEEEEEeCC
Q 040506 232 NSRASSEEGLCDRC 245 (365)
Q Consensus 232 ~~~~tsev~~~d~~ 245 (365)
. ....++++|.+
T Consensus 240 ~--~~~~i~~~d~~ 251 (331)
T 3u4y_A 240 E--STVDVFNFNQL 251 (331)
T ss_dssp S--SEEEEEEEETT
T ss_pred c--CCCEEEEEECC
Confidence 3 23457777644
No 47
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=91.46 E-value=2 Score=39.89 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=28.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCC---eEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGD---EQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~---e~~~l~v~Dl~tg~~l 188 (365)
+..+.++|||++++.+-...+. ....|+++|+.+++.+
T Consensus 256 ~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 256 PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 5567899999999887654332 3568999999998754
No 48
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=91.11 E-value=9.3 Score=35.23 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=46.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
+..+.++|+|++++++-..+| .|+++|+.+++.+ ..+.. ...-..+..++||++|++.
T Consensus 214 ~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~~~-----~~~~~-------------~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 214 SKILLYDPIRDLVYCSNWISE----DISVIDRKTKLEI-----RKTDK-------------IGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEEEETTTTEEEEEETTTT----EEEEEETTTTEEE-----EECCC-------------CSEEEEEEECTTSSEEEEE
T ss_pred eeEEEEcCCCCEEEEEecCCC----cEEEEECCCCcEE-----EEecC-------------CCCceEEEEcCCCCEEEEE
Confidence 345679999999888765444 6999999988642 11111 1112346678899888776
Q ss_pred eCCC-----cceEEEEEeCC
Q 040506 231 SNSR-----ASSEEGLCDRC 245 (365)
Q Consensus 231 ~~~~-----~tsev~~~d~~ 245 (365)
.... ....|++.|..
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp EEESCTTCSCCEEEEEEETT
T ss_pred ECCCCccccCCCeEEEEECC
Confidence 6432 13577788754
No 49
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=90.99 E-value=3.2 Score=37.08 Aligned_cols=84 Identities=4% Similarity=-0.012 Sum_probs=50.2
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDSTD 202 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~~~ 202 (365)
+..+++||||++||.+-. +| .|+|+|+.+++.+. .|+.+.+.+..
T Consensus 35 v~~~~~s~~~~~l~~~~~-dg----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-- 107 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSK-DS----SASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ-- 107 (369)
T ss_dssp EEEEEECTTSCEEEEEES-SS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--
T ss_pred EEEEEEcCCCCEEEEEeC-CC----EEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 445679999998887643 23 68999998886543 35555554321
Q ss_pred CccEEeeCCCCeEEEEEEcCCCcEEEEEeCCC--cceEEEEEe
Q 040506 203 DAPIFTEGDSGFCVDITSTKDGKFITVNSNSR--ASSEEGLCD 243 (365)
Q Consensus 203 d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~--~tsev~~~d 243 (365)
-...+. .......+..++++++++...... ....+++.+
T Consensus 108 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d 148 (369)
T 3zwl_B 108 CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYE 148 (369)
T ss_dssp EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEE
T ss_pred EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEE
Confidence 111222 222234467799999988776551 124555555
No 50
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=90.91 E-value=1.3 Score=40.30 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=22.7
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+.+||||++++++-..+| .|+++|+.+|+.
T Consensus 215 ~~~~spdg~~l~v~~~~~~----~v~v~~~~~g~~ 245 (361)
T 3scy_A 215 HLIFNSDGKFAYLINEIGG----TVIAFRYADGML 245 (361)
T ss_dssp EEEECTTSSEEEEEETTTC----EEEEEEEETTEE
T ss_pred EEEEcCCCCEEEEEcCCCC----eEEEEEecCCce
Confidence 4679999998877654333 488899888754
No 51
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=89.94 E-value=10 Score=33.68 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=19.9
Q ss_pred EEEEcCCCcEEEEEeCCCcceEEEEEeCCC
Q 040506 217 DITSTKDGKFITVNSNSRASSEEGLCDRCD 246 (365)
Q Consensus 217 ~~~~s~d~~~l~i~~~~~~tsev~~~d~~~ 246 (365)
.+..++||+++++.... ....|+++|...
T Consensus 145 ~~~~s~dg~~l~~~~~~-~~~~i~~~d~~~ 173 (353)
T 3vgz_A 145 ELVADDATNTVYISGIG-KESVIWVVDGGN 173 (353)
T ss_dssp EEEEETTTTEEEEEEES-SSCEEEEEETTT
T ss_pred eEEECCCCCEEEEEecC-CCceEEEEcCCC
Confidence 46779999998876532 235688888543
No 52
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=89.83 E-value=0.97 Score=42.31 Aligned_cols=82 Identities=11% Similarity=-0.026 Sum_probs=50.7
Q ss_pred eEEeCCCCCEEEEEEcC-----CCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEE
Q 040506 153 TCRVSPDHNFLAYTIDT-----SGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFI 227 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~-----~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l 227 (365)
.+.+||||+++.++-.. .|...-.+.++|++|++.+ -...+|.+... + ....+ . .+..|+||++|
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~---~~i~~~~~~~~--~--~g~~p-~--~~~~spDG~~l 139 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI---ADIELPDAPRF--D--VGPYS-W--MNANTPNNADL 139 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE---EEEECCCcccc--c--cCCCc-c--ceEECCCCCEE
Confidence 67899999999888642 3334457889999988753 22234321100 0 01122 2 35679999999
Q ss_pred EEEeCCCcceEEEEEeCCC
Q 040506 228 TVNSNSRASSEEGLCDRCD 246 (365)
Q Consensus 228 ~i~~~~~~tsev~~~d~~~ 246 (365)
++.... .++.|.++| +.
T Consensus 140 ~v~n~~-~~~~v~viD-~t 156 (373)
T 2mad_H 140 LFFQFA-AGPAVGLVV-QG 156 (373)
T ss_pred EEEecC-CCCeEEEEE-CC
Confidence 887432 245688888 54
No 53
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=89.17 E-value=0.62 Score=44.10 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=49.1
Q ss_pred EEeCCCCCEEEEEEc-----CCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEE
Q 040506 154 CRVSPDHNFLAYTID-----TSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFIT 228 (365)
Q Consensus 154 ~~~Spdg~~la~~~d-----~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~ 228 (365)
+.+||||+++..+-. ..|.+.-.+.++|++|++.+. ...+|... ...+ . ..++. +..|+||++++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~---~I~v~~g~--r~~~--g-~~P~~--~a~spDGk~ly 152 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA---DIELPDAP--RFLV--G-TYPWM--TSLTPDGKTLL 152 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE---EEEETTCC--CCCB--S-CCGGG--EEECTTSSEEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEE---EEECCCcc--cccc--C-CCCce--EEEcCCCCEEE
Confidence 789999998877643 234556789999999998632 22333210 0000 1 11222 45699999988
Q ss_pred EEeCCCcceEEEEEeCC
Q 040506 229 VNSNSRASSEEGLCDRC 245 (365)
Q Consensus 229 i~~~~~~tsev~~~d~~ 245 (365)
+... ...+.|.++|..
T Consensus 153 Van~-~~~~~VsVID~~ 168 (386)
T 3sjl_D 153 FYQF-SPAPAVGVVDLE 168 (386)
T ss_dssp EEEC-SSSCEEEEEETT
T ss_pred EEEc-CCCCeEEEEECC
Confidence 7632 234567888844
No 54
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=89.04 E-value=3.1 Score=37.14 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=40.3
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
.+.+||||++++++-. + ...|+++|+.+|+. +....++.+ ..+.|.. +.. ++.+....++...++...
T Consensus 235 ~~~~s~dg~~l~~~~~-~---~~~v~~~d~~~~~~---~~~~~~~~~---~~~~~s~-dg~-~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 235 NISLDTARQRAFITDS-K---AAEVLVVDTRNGNI---LAKVAAPES---LAVLFNP-ARN-EAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEEETTTTEEEEEES-S---SSEEEEEETTTCCE---EEEEECSSC---CCEEEET-TTT-EEEEEETTTTEEEEEETT
T ss_pred eEEECCCCCEEEEEeC-C---CCEEEEEECCCCcE---EEEEEcCCC---ceEEECC-CCC-EEEEEECCCCeEEEEECC
Confidence 4689999998866643 2 23589999999985 344455543 1245543 333 233444556665555543
No 55
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=89.01 E-value=1.9 Score=39.57 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=24.6
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCe-EEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDE-QFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e-~~~l~v~Dl~tg~~ 187 (365)
.+..+++||||++||-+-+....- ...+++++..+|..
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~ 82 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP 82 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---
T ss_pred CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc
Confidence 356778999999998764432211 24688999887753
No 56
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=88.90 E-value=4 Score=36.65 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=42.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC-CcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN-QCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t-g~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
...+++||||++|+++-...+ .|.++|+.. |+. ..+.....+ ..... .+..++||++|++
T Consensus 242 ~~~i~~spdG~~l~v~~~~~~----~v~v~~~~~~g~~-~~~~~~~~~------------~~~~~--~~~~spdg~~l~v 302 (347)
T 3hfq_A 242 AAAIRLSHDGHFLYVSNRGYN----TLAVFAVTADGHL-TLIQQISTE------------GDFPR--DFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEECTTSCEEEEEEETTT----EEEEEEECGGGCE-EEEEEEECS------------SSCCC--EEEECTTSSEEEE
T ss_pred ceeEEECCCCCEEEEEeCCCC----EEEEEEECCCCcE-EEeEEEecC------------CCCcC--eEEECCCCCEEEE
Confidence 445789999999877755333 588888863 322 111111111 01112 3567999999987
Q ss_pred EeCCCcceEEEEEe
Q 040506 230 NSNSRASSEEGLCD 243 (365)
Q Consensus 230 ~~~~~~tsev~~~d 243 (365)
......+-.+|-++
T Consensus 303 ~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 303 VNQNTDNATLYARD 316 (347)
T ss_dssp EETTTTEEEEEEEC
T ss_pred EEcCCCcEEEEEEe
Confidence 65543334445444
No 57
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=88.76 E-value=4.9 Score=35.57 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=44.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDSTD 202 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~~~ 202 (365)
+..+++||||++||-+-. + .++++||+++++.+. .|..|.+.+..
T Consensus 16 V~~~~fsp~~~~l~s~~~-d----g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~-- 88 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLY-S----GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-- 88 (304)
T ss_dssp EEEEEECSSSSEEEEEET-T----SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--
T ss_pred eEEEEECCCCCEEEEEcC-C----CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc--
Confidence 456679999998886543 2 369999998875432 45556654432
Q ss_pred CccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 203 DAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 203 d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
-...+.. ....-..+..++++++|+..+.
T Consensus 89 ~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~ 117 (304)
T 2ynn_A 89 KVVDFEA-HPDYIRSIAVHPTKPYVLSGSD 117 (304)
T ss_dssp EEEEEEC-CSSCEEEEEECSSSSEEEEEET
T ss_pred EEEEEeC-CCCcEEEEEEcCCCCEEEEECC
Confidence 1122332 2223345677888888765443
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=88.75 E-value=4.8 Score=35.36 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=24.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.+||+|++++.+-. .| .++++|+.+++.
T Consensus 227 v~~~~~s~~~~~l~~~~~-~~----~i~~~~~~~~~~ 258 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGME-SS----NVEVLHVNKPDK 258 (337)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTSSCE
T ss_pred eEEEEECCCCCEEEEEcC-CC----cEEEEECCCCCe
Confidence 445679999999998754 33 499999988764
No 59
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=88.06 E-value=2.2 Score=39.33 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=49.5
Q ss_pred eEEeCCCCCEEEEEEc-----CCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEE
Q 040506 153 TCRVSPDHNFLAYTID-----TSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFI 227 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d-----~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l 227 (365)
.+.+||||+++..+-. ..|...-+|.++|+.|++.+.++ .++... +.....+.. +..|+||++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i---~~~~~~------~~~g~~p~~--i~~spdg~~l 122 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI---SLPPKR------VQGLNYDGL--FRQTTDGKFI 122 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE---EECTTB------CCBCCCGGG--EEECTTSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE---EcCccc------cccCCCcce--EEECCCCCEE
Confidence 6789999998877653 24566678999999998753222 222110 101111222 4679999999
Q ss_pred EEEeCCCcceEEEEEeCC
Q 040506 228 TVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 228 ~i~~~~~~tsev~~~d~~ 245 (365)
++.... ..+.|.++|..
T Consensus 123 ~v~n~~-~~~~v~v~d~~ 139 (361)
T 2oiz_A 123 VLQNAS-PATSIGIVDVA 139 (361)
T ss_dssp EEEEES-SSEEEEEEETT
T ss_pred EEECCC-CCCeEEEEECC
Confidence 886432 23556666744
No 60
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=88.04 E-value=1.5 Score=38.62 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=29.5
Q ss_pred EEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 134 EILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 134 evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+.+||.-.+..+ |+ +.-+.+|+++ .||.+.| | +|+|||+.||+.+
T Consensus 14 ~rvldap~~~~d--~y-~~~l~WS~~~-~lAvg~D--~----tV~iWd~~tg~~~ 58 (318)
T 4ggc_A 14 DRILDAPEIRND--YY-LNLVDWSSGN-VLAVALD--N----SVYLWSASSGDIL 58 (318)
T ss_dssp SEEEECTTCCCC--TT-CBCEEECTTS-EEEEEET--T----EEEEEETTTCCEE
T ss_pred CEEeeCCCCccc--cc-ceEEEECCCC-EEEEEeC--C----EEEEEECCCCCEE
Confidence 345785444332 22 2335689886 8888864 2 6999999999853
No 61
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=88.01 E-value=4.3 Score=36.44 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=25.5
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++||.+-. +| .|+++|+++|+.+
T Consensus 167 v~~~~~spdg~~lasg~~-dg----~i~iwd~~~~~~~ 199 (321)
T 3ow8_A 167 ILSIAYSPDGKYLASGAI-DG----IINIFDIATGKLL 199 (321)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEcC-CC----eEEEEECCCCcEE
Confidence 345689999999997644 33 5999999999753
No 62
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=88.00 E-value=2.1 Score=37.89 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=43.9
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
.+.+||||++++++ + ..|+++|+.+++.+ .....+ .... .+..++||++|++..
T Consensus 245 ~~~~s~dg~~l~~~-~------~~v~~~d~~~~~~~---~~~~~~-------------~~~~--~~~~s~dg~~l~~~~- 298 (337)
T 1pby_B 245 STAVNPAKTRAFGA-Y------NVLESFDLEKNASI---KRVPLP-------------HSYY--SVNVSTDGSTVWLGG- 298 (337)
T ss_dssp EEEECTTSSEEEEE-E------SEEEEEETTTTEEE---EEEECS-------------SCCC--EEEECTTSCEEEEES-
T ss_pred eEEECCCCCEEEEe-C------CeEEEEECCCCcCc---ceecCC-------------Ccee--eEEECCCCCEEEEEc-
Confidence 47899999998887 2 47999999998752 222222 1112 356799999988752
Q ss_pred CCcceEEEEEeCC
Q 040506 233 SRASSEEGLCDRC 245 (365)
Q Consensus 233 ~~~tsev~~~d~~ 245 (365)
....|+++|..
T Consensus 299 --~~~~i~v~d~~ 309 (337)
T 1pby_B 299 --ALGDLAAYDAE 309 (337)
T ss_dssp --BSSEEEEEETT
T ss_pred --CCCcEEEEECc
Confidence 24678877754
No 63
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=87.34 E-value=5.3 Score=35.24 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=22.4
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECC--CCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR--NQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~--tg~~ 187 (365)
.+.++|||++++++-...| .++++|+. +|+.
T Consensus 182 ~~~~~pdg~~l~~~~~~~~----~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 182 HMVFHPNEQYAYCVNELNS----SVDVWELKDPHGNI 214 (343)
T ss_dssp EEEECTTSSEEEEEETTTT----EEEEEESSCTTSCC
T ss_pred eEEECCCCCEEEEEeCCCC----EEEEEEecCCCCcE
Confidence 4679999998887754333 58889984 4654
No 64
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=87.13 E-value=4 Score=37.76 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=25.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++||.+-. + .+|+++|+.+++.+
T Consensus 126 v~~v~~s~dg~~l~s~~~-d----~~i~iwd~~~~~~~ 158 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAE-D----RLIRIWDIENRKIV 158 (393)
T ss_dssp EEEEEECTTSSEEEEEET-T----SCEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEcC-C----CeEEEEECCCCcEE
Confidence 556789999999987643 2 37999999988654
No 65
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=86.42 E-value=5.1 Score=36.58 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=36.8
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECC-CCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR-NQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~-tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i 229 (365)
...+.+||||++|+++ +. |++ .|+++|+. +|+.. .+....+.. ....--.+..++||++|++
T Consensus 147 ~~~~~~spdG~~l~~~-~~-~~~--~v~~~~~~~~g~~~-~~~~~~~~~------------~g~~p~~~~~spdg~~l~v 209 (365)
T 1jof_A 147 IHGMVFDPTETYLYSA-DL-TAN--KLWTHRKLASGEVE-LVGSVDAPD------------PGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp EEEEEECTTSSEEEEE-ET-TTT--EEEEEEECTTSCEE-EEEEEECSS------------TTCCEEEEEECTTSSEEEE
T ss_pred ceEEEECCCCCEEEEE-cC-CCC--EEEEEEECCCCCEE-EeeeEecCC------------CCCCCCEeEECCCCCEEEE
Confidence 3456799999987654 43 333 58889998 77641 111111100 0111123567899998877
Q ss_pred EeC
Q 040506 230 NSN 232 (365)
Q Consensus 230 ~~~ 232 (365)
...
T Consensus 210 ~~~ 212 (365)
T 1jof_A 210 LME 212 (365)
T ss_dssp EET
T ss_pred EEC
Confidence 543
No 66
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=86.14 E-value=5.3 Score=35.83 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=37.9
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECC-CCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR-NQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~-tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
.+.+||||+ + |..+.++. .++++|+. +|+.. .+....+. ....-..+..++||++|++..
T Consensus 145 ~~~~spdg~-l-~v~~~~~~---~v~~~~~~~~g~~~-~~~~~~~~-------------~g~~p~~~~~spdg~~l~v~~ 205 (347)
T 3hfq_A 145 YTDLTPDNR-L-AVIDLGSD---KVYVYNVSDAGQLS-EQSVLTME-------------AGFGPRHLVFSPDGQYAFLAG 205 (347)
T ss_dssp EEEECTTSC-E-EEEETTTT---EEEEEEECTTSCEE-EEEEEECC-------------TTCCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCc-E-EEEeCCCC---EEEEEEECCCCcEE-EeeeEEcC-------------CCCCCceEEECCCCCEEEEEe
Confidence 468999999 4 33343332 58888988 55431 11111111 000112367799999888765
Q ss_pred CCCcceEEEEEe
Q 040506 232 NSRASSEEGLCD 243 (365)
Q Consensus 232 ~~~~tsev~~~d 243 (365)
.....-.+|-++
T Consensus 206 ~~~~~v~v~~~~ 217 (347)
T 3hfq_A 206 ELSSQIASLKYD 217 (347)
T ss_dssp TTTTEEEEEEEE
T ss_pred CCCCEEEEEEec
Confidence 443333344333
No 67
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=85.92 E-value=5.8 Score=39.23 Aligned_cols=83 Identities=13% Similarity=0.006 Sum_probs=43.6
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCCCCCcc
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDSTDDAP 205 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~~~d~l 205 (365)
+.+||||++||++.+ . +++++|+.+++.+. .|..|.+.+....-..
T Consensus 24 ~~~spdg~~l~~~~~---~---~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 24 LGNTPAGDKIQYCNG---T---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp CEECTTSSEEEEEET---T---EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred EeeCCCCCEEEeCCC---C---EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence 457888888887642 1 67788887654331 3555555322111011
Q ss_pred EEeeCCCCeEEEEEEcCCCcEEEEEeCCCc-ceEEEEEe
Q 040506 206 IFTEGDSGFCVDITSTKDGKFITVNSNSRA-SSEEGLCD 243 (365)
Q Consensus 206 vf~e~d~~~~~~~~~s~d~~~l~i~~~~~~-tsev~~~d 243 (365)
.+.... ..-..+..++||++|+....... ...+++.+
T Consensus 98 ~~~~~~-~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 98 TIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp EEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred eecccC-CceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 122212 22335778999998876554322 13444444
No 68
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=85.91 E-value=3.1 Score=38.11 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=25.2
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++||-+-. +| +|+++|+++|+.+
T Consensus 130 V~~v~~spdg~~l~sgs~-d~----~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 130 VSTVSVLSSGTQAVSGSK-DI----CIKVWDLAQQVVL 162 (344)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEeC-CC----eEEEEECCCCcEE
Confidence 445679999999886533 33 6999999998764
No 69
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=85.29 E-value=8.6 Score=33.83 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=24.5
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++|+-+-. ..+|+++|+.+++.+
T Consensus 218 v~~~~~s~~~~~l~s~s~-----Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 218 LNTVTVSPDGSLCASGGK-----DGQAMLWDLNEGKHL 250 (340)
T ss_dssp EEEEEECTTSSEEEEEET-----TCEEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEeC-----CCeEEEEEeccCcee
Confidence 445679999999886532 237999999988654
No 70
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=85.26 E-value=5 Score=36.65 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=19.6
Q ss_pred eeEEeCCCCC-EEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 152 GTCRVSPDHN-FLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 152 ~~~~~Spdg~-~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
..+.++|++. +||.+ +.+| +|+++|+.+++.+
T Consensus 218 ~~~~~~p~~~~~l~sg-~~dg----~v~~wd~~~~~~~ 250 (344)
T 4gqb_B 218 TSLAWHPQQSEVFVFG-DENG----TVSLVDTKSTSCV 250 (344)
T ss_dssp EEEEECSSCTTEEEEE-ETTS----EEEEEESCC--CC
T ss_pred eeeeecCCCCcceEEe-ccCC----cEEEEECCCCcEE
Confidence 3567888654 55543 3233 7999999998764
No 71
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=84.53 E-value=2.6 Score=40.08 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=26.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+..+++||||++||++.. .|+...+|+|||+.++
T Consensus 95 v~~l~~spdg~~lav~~~-sgs~d~~v~iwd~~~~ 128 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMM-SSEYGSIIAFFDVRTF 128 (434)
T ss_dssp EEEEEECTTSCEEEEEEE-ETTTEEEEEEEEHHHH
T ss_pred ccEEEEcCCCCEEEEEEe-ccCCCceEEEEEcccc
Confidence 456789999999998764 3566678999999775
No 72
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=84.51 E-value=2.3 Score=40.22 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=42.1
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeCC
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNS 233 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~ 233 (365)
+.+||||+++.++ +..++ ..+.|+|++|++.+.+| .++.. ..+|-.....|. ..++||+.+++....
T Consensus 142 ~a~spDGk~lyVa-n~~~~--~~VsVID~~t~~vv~tI---~v~g~----~~~~P~g~~~~~---~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 142 TSLTPDGKTLLFY-QFSPA--PAVGVVDLEGKAFKRML---DVPDC----YHIFPTAPDTFF---MHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEECTTSSEEEEE-ECSSS--CEEEEEETTTTEEEEEE---ECCSE----EEEEEEETTEEE---EEETTSCEEEEECCS
T ss_pred EEEcCCCCEEEEE-EcCCC--CeEEEEECCCCcEEEEE---ECCCc----ceeecCCCceeE---EECCCCCEEEEECCC
Confidence 7899999987765 32222 36889999999864333 33221 245543332222 568899998888755
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=84.40 E-value=9.4 Score=35.13 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=52.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC--------------------------eEEEEECCCCCCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP--------------------------RVLCTKLGSDSTDDA 204 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~--------------------------~v~~h~lGt~~~~d~ 204 (365)
+..+++||||++||.+-. +| .|+++|+.+++.+. .|+.|.+.+.. .-.
T Consensus 137 v~~v~~s~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~ 210 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLG-NG----LVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-HQI 210 (401)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEE
T ss_pred EEEEEECCCCCEEEEECC-CC----eEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-cee
Confidence 446789999999998765 33 69999999887542 45556654322 112
Q ss_pred cEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCC
Q 040506 205 PIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 205 lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~ 245 (365)
..+.... ..-..+..++++++|+.....+ .|++.|..
T Consensus 211 ~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~ 247 (401)
T 4aez_A 211 GTLQGHS-SEVCGLAWRSDGLQLASGGNDN---VVQIWDAR 247 (401)
T ss_dssp EEEECCS-SCEEEEEECTTSSEEEEEETTS---CEEEEETT
T ss_pred eEEcCCC-CCeeEEEEcCCCCEEEEEeCCC---eEEEccCC
Confidence 2233222 2234567788999887765443 46666643
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=84.33 E-value=26 Score=32.52 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=27.0
Q ss_pred CceEeEEEEeCCEEEEEEecCCeeeEEEEeC
Q 040506 284 DISLQDMDIFDGHLVLFVSKKGVPMLCSIDL 314 (365)
Q Consensus 284 ~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l 314 (365)
...+..+...++.|++....++...+.++++
T Consensus 433 ~~~v~~v~~~~~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 433 ADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp CSEEEEEEEETTEEEEEEEETTEEEEEEEEC
T ss_pred CCcEEEEEecCCEEEEEEEeCCeEEEEEeec
Confidence 4568888888999999999999999999886
No 75
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=84.27 E-value=1.7 Score=39.77 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=43.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
+..+++||||++||-+-. +| ..|++||+.+|+.+ ...+.|. ....-..+..++||++|+..
T Consensus 198 v~~~~~s~~g~~l~s~s~-d~---~~v~iwd~~~~~~~---~~~~~g~------------h~~~v~~~~~s~~~~~l~s~ 258 (355)
T 3vu4_A 198 IKMVRLNRKSDMVATCSQ-DG---TIIRVFKTEDGVLV---REFRRGL------------DRADVVDMKWSTDGSKLAVV 258 (355)
T ss_dssp EEEEEECTTSSEEEEEET-TC---SEEEEEETTTCCEE---EEEECTT------------CCSCEEEEEECTTSCEEEEE
T ss_pred eEEEEECCCCCEEEEEeC-CC---CEEEEEECCCCcEE---EEEEcCC------------CCCcEEEEEECCCCCEEEEE
Confidence 456789999999886532 22 13999999998752 2222221 11223346789999988765
Q ss_pred eCCCcceEEEEEeC
Q 040506 231 SNSRASSEEGLCDR 244 (365)
Q Consensus 231 ~~~~~tsev~~~d~ 244 (365)
+.. ..+.+.+.
T Consensus 259 s~d---~~v~iw~~ 269 (355)
T 3vu4_A 259 SDK---WTLHVFEI 269 (355)
T ss_dssp ETT---CEEEEEES
T ss_pred ECC---CEEEEEEc
Confidence 443 34555553
No 76
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=84.23 E-value=1.8 Score=40.23 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=24.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++||.+.+ .+++|+|+.+|+.+
T Consensus 67 V~~v~fspdg~~la~g~~------~~v~i~~~~~g~~~ 98 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGCN------KTTQVYRVSDGSLV 98 (393)
T ss_dssp CCEEEECTTSSEEEEECB------SCEEEEETTTCCEE
T ss_pred EEEEEECCCCCEEEEEcC------CcEEEEEecCCCEE
Confidence 345679999999997632 25899999999864
No 77
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=84.10 E-value=4.8 Score=35.56 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=19.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEEC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDL 182 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl 182 (365)
...+++||||++|+++-..+| .|+++|+
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~----~i~~~d~ 113 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAG----NVSVTRL 113 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTT----EEEEEEE
T ss_pred CcEEEEcCCCCEEEEEecCCC----eEEEEEC
Confidence 345678999998887765443 4777777
No 78
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=84.05 E-value=1.4 Score=42.20 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=50.9
Q ss_pred eEEeCCCCCEEEEEEcC-----CCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEE
Q 040506 153 TCRVSPDHNFLAYTIDT-----SGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFI 227 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~-----~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l 227 (365)
.+.+||||+++.++-.. .|...-.|.|+|+.|++.+ ....+|..... ++ ...+. .+..|+||++|
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv---~~I~v~g~~r~--~~---g~~P~--~~~~spDGk~l 191 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI---ADIELPDAPRF--LV---GTYQW--MNALTPDNKNL 191 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---EEEEETTCCCC--CB---SCCGG--GSEECTTSSEE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE---EEEECCCcccc--cc---CCCcc--eEEEcCCCCEE
Confidence 47899999998887642 2345568999999999863 33334421100 00 01111 24569999999
Q ss_pred EEEeCCCcceEEEEEeCCC
Q 040506 228 TVNSNSRASSEEGLCDRCD 246 (365)
Q Consensus 228 ~i~~~~~~tsev~~~d~~~ 246 (365)
++... ...+.|.++|...
T Consensus 192 yV~n~-~~~~~VsVID~~t 209 (426)
T 3c75_H 192 LFYQF-SPAPAVGVVDLEG 209 (426)
T ss_dssp EEEEC-SSSCEEEEEETTT
T ss_pred EEEec-CCCCeEEEEECCC
Confidence 88643 2246788888543
No 79
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=83.88 E-value=3.3 Score=36.80 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=43.5
Q ss_pred eeEEeCC-CCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 152 GTCRVSP-DHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 152 ~~~~~Sp-dg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
..+++|| ||++++.+ ...|+++|+.+++.+ .....+. ... .+..++||++|++.
T Consensus 258 ~~~~~sp~dg~~l~~~-------~~~v~~~d~~~~~~~---~~~~~~~-------------~~~--~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGV-------LNRLAKYDLKQRKLI---KAANLDH-------------TYY--CVAFDKKGDKLYLG 312 (349)
T ss_dssp EEEEECSSCTTEEEEE-------ESEEEEEETTTTEEE---EEEECSS-------------CCC--EEEECSSSSCEEEE
T ss_pred eeeEecCCCCCEEEEE-------cCeEEEEECccCeEE---EEEcCCC-------------Ccc--ceEECCCCCEEEEe
Confidence 3567899 99998887 237999999998752 2222221 112 35679999998874
Q ss_pred eCCCcceEEEEEeCC
Q 040506 231 SNSRASSEEGLCDRC 245 (365)
Q Consensus 231 ~~~~~tsev~~~d~~ 245 (365)
+ ....+++.|.+
T Consensus 313 -~--~~~~v~v~d~~ 324 (349)
T 1jmx_B 313 -G--TFNDLAVFNPD 324 (349)
T ss_dssp -S--BSSEEEEEETT
T ss_pred -c--CCCeEEEEecc
Confidence 2 23678877754
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=83.26 E-value=8.4 Score=39.01 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=24.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++||.+.. +| .|+|||+.+|+.+
T Consensus 16 v~~i~~sp~~~~la~~~~-~g----~v~iwd~~~~~~~ 48 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLY-SG----RVEIWNYETQVEV 48 (814)
T ss_dssp EEEEEECSSSSEEEEEET-TS----EEEEEETTTTEEE
T ss_pred eEEEEECCCCCEEEEEeC-CC----EEEEEECCCCceE
Confidence 445678999999998854 33 6889999887654
No 81
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=83.24 E-value=10 Score=33.10 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=24.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+.++|++++++.+-. .| .++++|+.+++.+
T Consensus 144 i~~~~~~~~~~~l~~~~~-dg----~v~~~d~~~~~~~ 176 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCS-DG----NIAVWDLHNQTLV 176 (337)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTTTEEE
T ss_pred eEEEEECCCCCEEEEEeC-CC----cEEEEeCCCCcee
Confidence 345679999999887754 33 4999999998753
No 82
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=82.83 E-value=9.4 Score=33.48 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=45.1
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
.+++||||++++++-...| .|+++|+.+|+.+ ....++... .... . .. .+..++||++|++...
T Consensus 38 ~~~~s~dg~~l~v~~~~~~----~v~~~d~~~~~~~---~~~~~~~~~-----~~~~-~-~~--~~~~s~dg~~l~~~~~ 101 (337)
T 1pby_B 38 VPMVAPGGRIAYATVNKSE----SLVKIDLVTGETL---GRIDLSTPE-----ERVK-S-LF--GAALSPDGKTLAIYES 101 (337)
T ss_dssp CEEECTTSSEEEEEETTTT----EEEEEETTTCCEE---EEEECCBTT-----EEEE-C-TT--CEEECTTSSEEEEEEE
T ss_pred ceEEcCCCCEEEEEeCCCC----eEEEEECCCCCeE---eeEEcCCcc-----cccc-c-cc--ceEECCCCCEEEEEec
Confidence 4679999999888765433 5899999998752 333333210 0000 1 11 2456788888777642
Q ss_pred C-------C--cceEEEEEeCC
Q 040506 233 S-------R--ASSEEGLCDRC 245 (365)
Q Consensus 233 ~-------~--~tsev~~~d~~ 245 (365)
. . ....++++|..
T Consensus 102 ~~~~~~~~~~~~~~~i~v~d~~ 123 (337)
T 1pby_B 102 PVRLELTHFEVQPTRVALYDAE 123 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETT
T ss_pred ccccccccccccCceEEEEECC
Confidence 1 1 23567777744
No 83
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=82.74 E-value=9.2 Score=33.79 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=46.2
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
.+.+||||++++++....| .|+++|+.+|+. +....++... +.. ... .. .+..++||++|++...
T Consensus 47 ~~~~s~dg~~~~v~~~~~~----~i~~~d~~t~~~---~~~~~~~~~~--~~~---~~~-~~--~~~~spdg~~l~~~~~ 111 (349)
T 1jmx_B 47 TAMMAPDNRTAYVLNNHYG----DIYGIDLDTCKN---TFHANLSSVP--GEV---GRS-MY--SFAISPDGKEVYATVN 111 (349)
T ss_dssp EEEECTTSSEEEEEETTTT----EEEEEETTTTEE---EEEEESCCST--TEE---EEC-SS--CEEECTTSSEEEEEEE
T ss_pred eeEECCCCCEEEEEeCCCC----cEEEEeCCCCcE---EEEEEccccc--ccc---ccc-cc--ceEECCCCCEEEEEcc
Confidence 4678999998877764333 589999999874 3333333211 000 000 11 2467899999888764
Q ss_pred C---------CcceEEEEEeC
Q 040506 233 S---------RASSEEGLCDR 244 (365)
Q Consensus 233 ~---------~~tsev~~~d~ 244 (365)
. .....++++|.
T Consensus 112 ~~~~~~~~~~~~~~~i~~~d~ 132 (349)
T 1jmx_B 112 PTQRLNDHYVVKPPRLEVFST 132 (349)
T ss_dssp EEEECSSCEEECCCEEEEEEG
T ss_pred cccccccccccCCCeEEEEEC
Confidence 3 11257888874
No 84
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=82.21 E-value=3.1 Score=38.32 Aligned_cols=69 Identities=9% Similarity=0.077 Sum_probs=45.3
Q ss_pred EEeCCCCCEEEEEEcCCCCe------EEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEE
Q 040506 154 CRVSPDHNFLAYTIDTSGDE------QFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFI 227 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e------~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l 227 (365)
+.++|||+++..+...+|.+ ..++.|+|++|++. +.+..+|. .+ ++..|+||++|
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~---v~~i~~~~--------------p~--~ia~spdg~~l 319 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR---VARIPGRD--------------AL--SMTIDQQRNLM 319 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE---EEEEECTT--------------CC--EEEEETTTTEE
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE---EEEEecCC--------------ee--EEEECCCCCEE
Confidence 57899999877776633321 34799999999975 23333332 12 35679999988
Q ss_pred EEEeCCCcceEEEEEeCC
Q 040506 228 TVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 228 ~i~~~~~~tsev~~~d~~ 245 (365)
++.. . ..|.++|..
T Consensus 320 ~v~n-~---~~v~v~D~~ 333 (361)
T 2oiz_A 320 LTLD-G---GNVNVYDIS 333 (361)
T ss_dssp EEEC-S---SCEEEEECS
T ss_pred EEeC-C---CeEEEEECC
Confidence 7643 2 667777743
No 85
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=81.91 E-value=15 Score=33.03 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=16.7
Q ss_pred EEEEcCCCcEEEEEeCCCcceEEEEEe
Q 040506 217 DITSTKDGKFITVNSNSRASSEEGLCD 243 (365)
Q Consensus 217 ~~~~s~d~~~l~i~~~~~~tsev~~~d 243 (365)
.+..++||++|++......+-.+|-++
T Consensus 159 ~~~~spdg~~l~~~~~~~~~v~v~~~~ 185 (361)
T 3scy_A 159 CVRITPDGKYLLADDLGTDQIHKFNIN 185 (361)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence 367899999988865433333344333
No 86
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=81.87 E-value=2.9 Score=38.96 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=23.2
Q ss_pred EeCCCCCEEEEEEc-------CCCCeEEEEEEEECCCCcc
Q 040506 155 RVSPDHNFLAYTID-------TSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 155 ~~Spdg~~la~~~d-------~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+||||++++..-. ..|+...+++++|+.+|+.
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence 58999998866432 3588889999999998864
No 87
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=81.76 E-value=6.7 Score=36.46 Aligned_cols=74 Identities=9% Similarity=-0.094 Sum_probs=46.9
Q ss_pred EEeCCCCCEEEEEEcCCCC-----eEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEE
Q 040506 154 CRVSPDHNFLAYTIDTSGD-----EQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFIT 228 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~-----e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~ 228 (365)
+.++|||+++-++.+.++. ..-+|.|+|++|++.+ .+..+|.. ++ ++..|+||++++
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv---~~i~~g~~-------------p~--~i~~s~Dg~~~l 333 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS---SQISLGHD-------------VD--AISVAQDGGPDL 333 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE---EEEECCCC-------------cC--eEEECCCCCeEE
Confidence 5688999887776663221 1246999999999853 33344431 12 356799999655
Q ss_pred EEeCCCcceEEEEEeCCC
Q 040506 229 VNSNSRASSEEGLCDRCD 246 (365)
Q Consensus 229 i~~~~~~tsev~~~d~~~ 246 (365)
+..+.+ ++.|.++|...
T Consensus 334 ~v~~~~-~~~V~ViD~~t 350 (373)
T 2mad_H 334 YALSAG-TEVLHIYDAGA 350 (373)
T ss_pred EEEcCC-CCeEEEEECCC
Confidence 544432 46788888543
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=81.76 E-value=15 Score=34.06 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=25.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++||.+-. + .+|++||+++++.+
T Consensus 150 V~sv~fspdg~~lasgs~-D----g~v~iWd~~~~~~~ 182 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTS-S----AEVQLWDVQQQKRL 182 (420)
T ss_dssp EEEEEECTTSSEEEEEET-T----SCEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEEC-C----CeEEEEEcCCCcEE
Confidence 456789999999997644 2 36999999998764
No 89
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=81.31 E-value=4.9 Score=36.74 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=25.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++|+-+-. .| +|+++|+.+++.+
T Consensus 142 V~~v~~spdg~~l~sgs~-dg----~v~iwd~~~~~~~ 174 (357)
T 4g56_B 142 VKTLSVFSDGTQAVSGGK-DF----SVKVWDLSQKAVL 174 (357)
T ss_dssp EEEEEECSSSSEEEEEET-TS----CEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEeC-CC----eEEEEECCCCcEE
Confidence 445679999999886533 33 5999999998754
No 90
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=81.15 E-value=15 Score=32.11 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=25.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..++++|||++|+.+-. + ..|+++|+.+++.+
T Consensus 68 v~~~~~~~~~~~l~s~~~-d----~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 68 ISDVAWSSDSNLLVSASD-D----KTLKIWDVSSGKCL 100 (312)
T ss_dssp EEEEEECTTSSEEEEEET-T----SEEEEEETTTCCEE
T ss_pred eEEEEEcCCCCEEEEECC-C----CEEEEEECCCCcEE
Confidence 445789999999887643 2 36999999988754
No 91
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=80.94 E-value=12 Score=32.73 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=24.3
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+.++|++++|+.+-. +| +|+++|+.+++.+
T Consensus 110 v~~~~~~~~~~~l~s~~~-d~----~i~iwd~~~~~~~ 142 (312)
T 4ery_A 110 VFCCNFNPQSNLIVSGSF-DE----SVRIWDVKTGKCL 142 (312)
T ss_dssp EEEEEECSSSSEEEEEET-TS----CEEEEETTTCCEE
T ss_pred EEEEEEcCCCCEEEEEeC-CC----cEEEEECCCCEEE
Confidence 345678999998876543 33 5999999998753
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=80.55 E-value=13 Score=33.74 Aligned_cols=28 Identities=21% Similarity=0.061 Sum_probs=21.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR 183 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~ 183 (365)
+..+.+||++++|+.+-. + ..|+++|+.
T Consensus 166 v~~~~~~~~~~~l~~~~~-d----~~i~i~d~~ 193 (383)
T 3ei3_B 166 YCCVDVSVSRQMLATGDS-T----GRLLLLGLD 193 (383)
T ss_dssp EEEEEEETTTTEEEEEET-T----SEEEEEETT
T ss_pred eEEEEECCCCCEEEEECC-C----CCEEEEECC
Confidence 456778999999887643 2 379999984
No 93
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=80.36 E-value=7.7 Score=34.86 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=25.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..++++|||++||.+-. + ..|+++|+.+++.+
T Consensus 173 i~~~~~~pdg~~lasg~~-d----g~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 173 YSSGVLHKDSLLLALYSP-D----GILDVYNLSSPDQA 205 (343)
T ss_dssp CCEEEECTTSCEEEEECT-T----SCEEEEESSCTTSC
T ss_pred eEEEEECCCCCEEEEEcC-C----CEEEEEECCCCCCC
Confidence 445679999999987633 2 27999999998764
No 94
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=80.30 E-value=9.8 Score=36.65 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=21.5
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++||.+-+ + .+|+|||+ +|+.+
T Consensus 19 V~~~a~spdg~~las~~~-d----~~v~iWd~-~~~~~ 50 (577)
T 2ymu_A 19 VRGVAFSPDGQTIASASD-D----KTVKLWNR-NGQLL 50 (577)
T ss_dssp EEEEEECTTSSCEEEEET-T----SEEEEECT-TSCEE
T ss_pred EEEEEECCCCCEEEEEeC-C----CEEEEEEC-CCCEE
Confidence 445678999999887632 2 26888985 55443
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=79.96 E-value=39 Score=31.45 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=44.8
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECC--CCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR--NQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFIT 228 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~--tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~ 228 (365)
+..+++||||++|+++-+.+| .|++||+. +|+.+..+-.|..+ ..-..+..++|+++|+
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~---------------~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDK----SLLVFDVDKTSKNVLKLRKRFCFS---------------KRPNAISIAEDDTTVI 165 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGT----EEEEEEECSSSSSCEEEEEEEECS---------------SCEEEEEECTTSSEEE
T ss_pred eEEEEEcCCCCEEEEEECCCC----eEEEEECcCCCCceeeeeecccCC---------------CCceEEEEcCCCCEEE
Confidence 556789999999866655444 69999998 77653222222211 1223466788888887
Q ss_pred EEeCCCcceEEEEEeC
Q 040506 229 VNSNSRASSEEGLCDR 244 (365)
Q Consensus 229 i~~~~~~tsev~~~d~ 244 (365)
.... ...+++++.
T Consensus 166 ~~~~---~g~v~~~~~ 178 (450)
T 2vdu_B 166 IADK---FGDVYSIDI 178 (450)
T ss_dssp EEET---TSEEEEEET
T ss_pred EEeC---CCcEEEEec
Confidence 6644 234666663
No 96
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=78.82 E-value=7.8 Score=38.31 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=35.7
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
..+++||||++||.+-. +| +|+++|+.++... .+........-..+..++||++|+..+
T Consensus 452 ~~va~spdg~~lasgs~-D~----~v~lwd~~~~~~~----------------~~~~~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 452 SCVALSNDKQFVAVGGQ-DS----KVHVYKLSGASVS----------------EVKTIVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp EEEEECTTSCEEEEEET-TS----EEEEEEEETTEEE----------------EEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEeCCCCEEEEeCC-CC----eEEEEEccCCcee----------------eeeccCCCCceEEEEECCCCCEEEEEc
Confidence 34678888888887643 22 6888888776431 001111112234577899999887554
Q ss_pred C
Q 040506 232 N 232 (365)
Q Consensus 232 ~ 232 (365)
.
T Consensus 511 ~ 511 (611)
T 1nr0_A 511 Q 511 (611)
T ss_dssp T
T ss_pred C
Confidence 3
No 97
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=78.51 E-value=18 Score=31.97 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=28.5
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+..+.++|+|++++.+.+..+.....|+++|+.++.
T Consensus 118 v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 445789999999999887655556689999988764
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=78.49 E-value=12 Score=34.41 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=22.8
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.++|+|+.++++-+.+| +|+++|+.+++.
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~ 166 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDN----VILVWDVGTGAA 166 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTS----CEEEEETTTTEE
T ss_pred EEEEEECcCCCCEEEEEcCCC----EEEEEECCCCCc
Confidence 456789999854444444444 599999988764
No 99
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=78.38 E-value=25 Score=31.52 Aligned_cols=33 Identities=12% Similarity=-0.025 Sum_probs=25.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..++++|+|++|+.+-. +| .|+++|+.+++.+
T Consensus 248 v~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~~~~ 280 (408)
T 4a11_B 248 VNGLCFTSDGLHLLTVGT-DN----RMRLWNSSNGENT 280 (408)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTTCCBC
T ss_pred eeEEEEcCCCCEEEEecC-CC----eEEEEECCCCccc
Confidence 456789999999987654 33 4999999998753
No 100
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.88 E-value=3.8 Score=37.71 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=24.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..++++|||++|+-+ ++..+|++||+.+|+.
T Consensus 252 v~~v~~~p~~~~l~s~-----s~D~~i~lwd~~~~~~ 283 (380)
T 3iz6_a 252 INSVKFFPDGQRFGTG-----SDDGTCRLFDMRTGHQ 283 (380)
T ss_dssp CCEEEECTTSSEEEEE-----CSSSCEEEEETTTTEE
T ss_pred eEEEEEecCCCeEEEE-----cCCCeEEEEECCCCcE
Confidence 4457899999988754 3334699999999864
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=77.62 E-value=9.2 Score=33.90 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=42.3
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
+..+++||||++||.+-. +| .|+++|+.+++.+ +.+ .. ....-..+..++||++|+..
T Consensus 276 v~~~~~sp~~~~l~s~~~-dg----~i~iwd~~~~~~~-----~~~-----------~~-~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 276 VNGIAFHPVHGTLATVGS-DG----RFSFWDKDARTKL-----KTS-----------EQ-LDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp EEEEEECTTTCCEEEEET-TS----CEEEEETTTTEEE-----EEC-----------CC-CSSCEEEEEECTTSSCEEEE
T ss_pred eEEEEEecCCCEEEEEcc-CC----eEEEEECCCCcEE-----EEe-----------cC-CCCCceEEEECCCCCeEEEE
Confidence 667789999999887644 33 4999999988642 111 11 11123346789999999887
Q ss_pred eCCCc
Q 040506 231 SNSRA 235 (365)
Q Consensus 231 ~~~~~ 235 (365)
+..+.
T Consensus 334 s~d~~ 338 (368)
T 3mmy_A 334 SSYDW 338 (368)
T ss_dssp ECCCS
T ss_pred ecccc
Confidence 76543
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=77.45 E-value=30 Score=29.75 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=26.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
+..++++|+|++||-+-. + .+|+++|+++|+.+.
T Consensus 70 V~~v~~~~~~~~l~sgs~-D----g~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 70 ISSVAWIKEGNYLAVGTS-S----AEVQLWDVQQQKRLR 103 (318)
T ss_dssp EEEEEECTTSSEEEEEET-T----SEEEEEETTTTEEEE
T ss_pred EEEEEECCCCCEEEEEEC-C----CcEEEeecCCceeEE
Confidence 456789999999986533 2 379999999997653
No 103
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=77.34 E-value=28 Score=30.91 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=48.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDSTD 202 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~~~ 202 (365)
+..+.++|+++++|-+- ...+|+++|+.+|+.+. .|..+.+.+..
T Consensus 83 v~~~~~~~~~~~l~s~s-----~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-- 155 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSS-----LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-- 155 (321)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS--
T ss_pred EEEEEECCCCCEEEEEe-----CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc--
Confidence 44567899998776442 22379999999886532 23334433221
Q ss_pred CccEEeeCCCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCC
Q 040506 203 DAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 203 d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~ 245 (365)
....+.. .......+..++||++|+.....+ .|.+.|..
T Consensus 156 ~~~~~~~-~~~~v~~~~~spdg~~lasg~~dg---~i~iwd~~ 194 (321)
T 3ow8_A 156 KEYSLDT-RGKFILSIAYSPDGKYLASGAIDG---IINIFDIA 194 (321)
T ss_dssp EEEEEEC-SSSCEEEEEECTTSSEEEEEETTS---CEEEEETT
T ss_pred eeEEecC-CCceEEEEEECCCCCEEEEEcCCC---eEEEEECC
Confidence 1111222 222345577899999987665443 46666643
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=77.25 E-value=14 Score=33.90 Aligned_cols=73 Identities=8% Similarity=-0.051 Sum_probs=43.6
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
..+.++|||++|+.+.+ ++....|+++|+.+++... ....++ .......+..++|+++|++..
T Consensus 224 ~~~~~~~~~~~l~~g~~--~~~d~~i~iwd~~~~~~~~--~~~~~~-------------~~~~v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 224 VHAVFVSEGKILTTGFS--RMSERQVALWDTKHLEEPL--SLQELD-------------TSSGVLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp CEEEECSTTEEEEEEEC--TTCCEEEEEEETTBCSSCS--EEEECC-------------CCSSCEEEEEETTTTEEEEEE
T ss_pred eEEEEcCCCcEEEEecc--CCCCceEEEEcCccccCCc--eEEecc-------------CCCceeEEEEcCCCCEEEEEE
Confidence 34678999999988865 3445689999998875311 111111 111223456788999887765
Q ss_pred CCCcceEEEEEe
Q 040506 232 NSRASSEEGLCD 243 (365)
Q Consensus 232 ~~~~tsev~~~d 243 (365)
... ..|++.+
T Consensus 287 ~~d--g~i~i~d 296 (402)
T 2aq5_A 287 KGD--SSIRYFE 296 (402)
T ss_dssp TTC--SCEEEEE
T ss_pred cCC--CeEEEEE
Confidence 432 2344444
No 105
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=77.21 E-value=12 Score=33.22 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=38.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
+..+++||||++||-+-. ..+|++||+.+++.+ +... ..+ .-..+..++++.+|+..
T Consensus 199 v~~~~~sp~g~~l~s~~~-----dg~i~iwd~~~~~~~---~~~~-------------~~~--~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 199 INTLTASPDGTLIASAGK-----DGEIMLWNLAAKKAM---YTLS-------------AQD--EVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp EEEEEECTTSSEEEEEET-----TCEEEEEETTTTEEE---EEEE-------------CCS--CEEEEEECSSSSEEEEE
T ss_pred EEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCcEE---EEec-------------CCC--cEEEEEEcCCCCEEEEE
Confidence 445789999999886533 347999999988642 1111 111 12346789999988765
Q ss_pred e
Q 040506 231 S 231 (365)
Q Consensus 231 ~ 231 (365)
.
T Consensus 256 ~ 256 (319)
T 3frx_A 256 T 256 (319)
T ss_dssp E
T ss_pred c
Confidence 4
No 106
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=77.01 E-value=6.7 Score=35.45 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=22.8
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+++||||++||-+-. + .+|+|+|+.+++.
T Consensus 21 ~l~~sp~g~~las~~~-D----~~i~iw~~~~~~~ 50 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGG-D----RRIRIWGTEGDSW 50 (345)
T ss_dssp EEEECTTSSCEEEEET-T----SCEEEEEEETTEE
T ss_pred EEEECCCCCEEEEEcC-C----CeEEEEEcCCCcc
Confidence 4579999999986633 2 3699999988753
No 107
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=76.51 E-value=9.4 Score=35.43 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=24.8
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+.++|++..++.+.. |+...+|++||+.+|+.+
T Consensus 279 V~~~~~~p~~~~~la~~~--gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGG--GTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp EEEEEECTTCTTEEEEEE--CTTTCEEEEEETTTTEEE
T ss_pred eeeeeeCCCcccEEEEEe--ecCCCEEEEEeCCccccc
Confidence 345567887766555433 555568999999999754
No 108
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=76.04 E-value=18 Score=32.72 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=23.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..++++|+|++||-+-. + .+|+++|+.+++.
T Consensus 243 v~~v~~~p~~~~l~s~s~-D----~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 243 VNSVRYYPSGDAFASGSD-D----ATCRLYDLRADRE 274 (354)
T ss_dssp EEEEEECTTSSEEEEEET-T----SCEEEEETTTTEE
T ss_pred eEEEEEeCCCCEEEEEeC-C----CeEEEEECCCCcE
Confidence 456789999998876533 2 3699999988753
No 109
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=75.85 E-value=32 Score=31.38 Aligned_cols=32 Identities=25% Similarity=0.083 Sum_probs=24.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.++|+|++|+.+-. +| .|+++|+.+++.
T Consensus 220 v~~~~~~~~~~~l~s~~~-d~----~v~iwd~~~~~~ 251 (401)
T 4aez_A 220 VCGLAWRSDGLQLASGGN-DN----VVQIWDARSSIP 251 (401)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTCSSE
T ss_pred eeEEEEcCCCCEEEEEeC-CC----eEEEccCCCCCc
Confidence 445779999999988754 23 699999999875
No 110
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=75.55 E-value=19 Score=32.13 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=24.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..++++|+|++||.+-. +| +|+++|+.+++.
T Consensus 229 v~~v~~~p~~~~l~s~s~-d~----~v~iwd~~~~~~ 260 (340)
T 1got_B 229 INAICFFPNGNAFATGSD-DA----TCRLFDLRADQE 260 (340)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEEcC-CC----cEEEEECCCCcE
Confidence 456789999999886533 23 699999998764
No 111
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=75.48 E-value=25 Score=31.36 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=21.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+..+++||||++||-+-. ..+|++||+.+.
T Consensus 216 v~~~~~s~~g~~l~sgs~-----dg~v~iwd~~~~ 245 (343)
T 2xzm_R 216 VNHLSISPNGKYIATGGK-----DKKLLIWDILNL 245 (343)
T ss_dssp EEEEEECTTSSEEEEEET-----TCEEEEEESSCC
T ss_pred ceEEEECCCCCEEEEEcC-----CCeEEEEECCCC
Confidence 445689999999886532 337999999543
No 112
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=74.77 E-value=4.6 Score=35.78 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=23.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..++++|++++||-+- +..+|++||++++..
T Consensus 100 v~~~~~~~~~~~l~sgs-----~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 100 IRSIAVHPTKPYVLSGS-----DDLTVKLWNWENNWA 131 (304)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSCEEEEEGGGTTE
T ss_pred EEEEEEcCCCCEEEEEC-----CCCeEEEEECCCCcc
Confidence 44567999999887442 234799999998753
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=74.54 E-value=15 Score=34.42 Aligned_cols=28 Identities=11% Similarity=0.021 Sum_probs=21.2
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
.+.+||||++|+.+. +| .|+++|+++|+
T Consensus 9 ~v~~s~dg~~l~~~~--~~----~i~v~d~~~g~ 36 (450)
T 2vdu_B 9 NLLTSRDGSLVFAII--KN----CILSFKYQSPN 36 (450)
T ss_dssp EEEECSSSSEEEEEE--TT----EEEEEEEETTT
T ss_pred EEEecCCCCEEEEEe--CC----eEEEEECCCCC
Confidence 345899999666553 22 59999999998
No 114
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=74.52 E-value=5.6 Score=35.63 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=18.7
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
.+++||||++||.+-. ...|+++|+.+++
T Consensus 13 ~~~~s~~~~~l~~~~~-----d~~v~i~~~~~~~ 41 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPN-----NHEVHIYEKSGNK 41 (372)
T ss_dssp EEEECTTSSEEEEECS-----SSEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEeC-----CCEEEEEeCCCCc
Confidence 4567788877776522 2257777777764
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=74.52 E-value=7.6 Score=38.66 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=25.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+++||||++||.+-. ..+|+++|+.+|..
T Consensus 132 v~svafSPDG~~LAsgs~-----DGtVkIWd~~~~~l 163 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNE-----DGELQFFSIRKNSE 163 (588)
T ss_dssp EEEEEECSSSSCEEEEET-----TSEEEEEECCCCTT
T ss_pred EEEEEEcCCCCEEEEEcC-----CCEEEEEECCCCcc
Confidence 446789999999998854 33699999998864
No 116
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=74.29 E-value=9.1 Score=35.66 Aligned_cols=72 Identities=8% Similarity=-0.039 Sum_probs=46.0
Q ss_pred EEeCCCCCEEEEEEcCC-C-----CeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEE
Q 040506 154 CRVSPDHNFLAYTIDTS-G-----DEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFI 227 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~-G-----~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l 227 (365)
+.++|||+++.++.... | ++. ..|+|++|++.+ .+..+| .. -.++..++||+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~--~~ViD~~t~~vv---~~i~vg----------~~-----p~gi~~s~Dg~~l 328 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAEN--TSSVTASVGQTS---GPISNG----------HD-----SDAIIAAQDGASD 328 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEE--EEEEESSSCCEE---ECCEEE----------EE-----ECEEEECCSSSCE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCC--EEEEECCCCeEE---EEEECC----------CC-----cceEEECCCCCEE
Confidence 56999999988887634 4 333 239999999853 111222 11 1236779999988
Q ss_pred EEEeCCCcceEEEEEeCCC
Q 040506 228 TVNSNSRASSEEGLCDRCD 246 (365)
Q Consensus 228 ~i~~~~~~tsev~~~d~~~ 246 (365)
++..+ ..++.|.++|...
T Consensus 329 ~va~~-~~~~~VsVID~~t 346 (368)
T 1mda_H 329 NYANS-AGTEVLDIYDAAS 346 (368)
T ss_dssp EEEEE-TTTTEEEEEESSS
T ss_pred EEEcc-CCCCeEEEEECCC
Confidence 77654 1246788888543
No 117
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=74.28 E-value=16 Score=32.84 Aligned_cols=31 Identities=23% Similarity=0.072 Sum_probs=21.5
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+..+++||||++||.+-. +| +++++|+.++.
T Consensus 64 v~~~~~sp~g~~l~s~s~-D~----~v~iw~~~~~~ 94 (345)
T 3fm0_A 64 VRKVAWSPCGNYLASASF-DA----TTCIWKKNQDD 94 (345)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEEECCC-
T ss_pred EEEEEECCCCCEEEEEEC-CC----cEEEEEccCCC
Confidence 455789999999887643 22 47788877653
No 118
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=74.09 E-value=4.2 Score=37.25 Aligned_cols=36 Identities=22% Similarity=0.067 Sum_probs=25.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCC------CeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSG------DEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G------~e~~~l~v~Dl~tg~ 186 (365)
+..+++||||+.++++-+..| +....|+|+|+.+++
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~ 56 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAAD 56 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGG
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCC
Confidence 445679999984444445455 666789999999875
No 119
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=73.29 E-value=10 Score=36.11 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=41.8
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
.+.+||||+++.++-. .. ...+.|+|++|++.+ ....++.. ..++-... ..+ +..++||+.++|..
T Consensus 181 ~~~~spDGk~lyV~n~-~~--~~~VsVID~~t~kvv---~~I~v~g~----~~~~p~g~-~~~--v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 181 MNALTPDNKNLLFYQF-SP--APAVGVVDLEGKTFD---RMLDVPDC----YHIFPASP-TVF--YMNCRDGSLARVDF 246 (426)
T ss_dssp GSEECTTSSEEEEEEC-SS--SCEEEEEETTTTEEE---EEEECCSE----EEEEEEET-TEE--EEEETTSSEEEEEC
T ss_pred eEEEcCCCCEEEEEec-CC--CCeEEEEECCCCeEE---EEEEcCCc----eeeccCCC-cEE--EEEcCCCCEEEEEC
Confidence 5789999999877632 21 235899999999864 33344321 23443322 223 34678999888887
No 120
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=72.75 E-value=27 Score=34.80 Aligned_cols=33 Identities=21% Similarity=0.074 Sum_probs=24.8
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++|+-+-. ..+|+|+|+.+++.+
T Consensus 433 v~~v~~s~~g~~l~sgs~-----Dg~v~vwd~~~~~~~ 465 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGSW-----DGELRLWDLAAGVST 465 (694)
T ss_dssp EEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEeC-----CCcEEEEECCCCcce
Confidence 446789999999885532 237999999998653
No 121
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=71.50 E-value=8.2 Score=34.40 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=40.3
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
+..+++||||+++|.+.+. .++++++.++..+. .+.... ..+.......-..+..++||++|+..
T Consensus 240 v~~~~~sp~~~~la~~~~~------~i~v~~~~~~~~~~-----~~~~~~----~~~~~~~~~~v~~~~~spdg~~l~sg 304 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT------GIKVFSLDPQYLVD-----DLRPEF----AGYSKAAEPHAVSLAWSADGQTLFAG 304 (319)
T ss_dssp EEEEEECSSSSEEEEEETT------EEEEEEETTEEEEE-----EECCCC----TTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCC------CcEEEEeCcCeeee-----ccCccc----cccccCcCcceeEEEECCCCCEEEEe
Confidence 4467899999999987542 28899988765321 111110 00111112234567889999998765
Q ss_pred eCC
Q 040506 231 SNS 233 (365)
Q Consensus 231 ~~~ 233 (365)
+..
T Consensus 305 ~~D 307 (319)
T 3frx_A 305 YTD 307 (319)
T ss_dssp ETT
T ss_pred ecC
Confidence 544
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=71.23 E-value=18 Score=35.29 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=40.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEEC--CCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcC----CC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDL--RNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTK----DG 224 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl--~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~----d~ 224 (365)
+..+.+||||++|+.+-. + -+|+++|+ +|++.+. ....|. .. .++..|+ ||
T Consensus 181 ~~~v~~spdg~~l~v~~~-d----~~V~v~D~~~~t~~~~~---~i~~g~-------------~p--~~va~sp~~~~dg 237 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGR-D----ARIDMIDLWAKEPTKVA---EIKIGI-------------EA--RSVESSKFKGYED 237 (543)
T ss_dssp EEEEEECTTSCEEEEEET-T----SEEEEEETTSSSCEEEE---EEECCS-------------EE--EEEEECCSTTCTT
T ss_pred cceEEECCCCCEEEEECC-C----CeEEEEECcCCCCcEEE---EEecCC-------------Cc--ceEEeCCCcCCCC
Confidence 345679999998877632 2 46999999 7776421 112221 11 2355688 88
Q ss_pred cEEEEEeCCCcceEEEEEe
Q 040506 225 KFITVNSNSRASSEEGLCD 243 (365)
Q Consensus 225 ~~l~i~~~~~~tsev~~~d 243 (365)
++|++.... ...|.++|
T Consensus 238 ~~l~v~~~~--~~~v~v~D 254 (543)
T 1nir_A 238 RYTIAGAYW--PPQFAIMD 254 (543)
T ss_dssp TEEEEEEEE--SSEEEEEE
T ss_pred CEEEEEEcc--CCeEEEEe
Confidence 888765432 23345555
No 123
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=71.00 E-value=16 Score=32.73 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=18.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+..+.+||||++||.+-. +| +|+++|+.+++
T Consensus 58 v~~~~~s~~~~~l~s~s~-d~----~v~vwd~~~~~ 88 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQ-DR----NAYVYEKRPDG 88 (377)
T ss_dssp EEEEEECTTTCCEEEEET-TS----SEEEC------
T ss_pred EEEEEEeCCCCEEEEEeC-CC----eEEEEEcCCCC
Confidence 445679999998887643 33 59999999887
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=70.93 E-value=41 Score=29.86 Aligned_cols=32 Identities=3% Similarity=0.149 Sum_probs=23.2
Q ss_pred EeeEEeCC--CCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSP--DHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Sp--dg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.++| +|++++-+-. +| +|+++|+.+++.
T Consensus 128 v~~~~~~~~~~~~~l~s~s~-dg----~i~~wd~~~~~~ 161 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADN-RG----TIGFQSYEDDSQ 161 (343)
T ss_dssp EEEEECCC---CCEEEEEET-TC----CEEEEESSSSCE
T ss_pred EEEEEcCCCCCCCEEEEEeC-CC----cEEEEECCCCcE
Confidence 45677899 9998876543 33 599999999875
No 125
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=70.92 E-value=29 Score=30.94 Aligned_cols=32 Identities=19% Similarity=0.110 Sum_probs=24.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.+||||++||-+-. +| +|+|||+.+++.
T Consensus 58 v~~~~~s~d~~~l~s~s~-Dg----~v~iWd~~~~~~ 89 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQ-DG----KLIIWDSYTTNK 89 (340)
T ss_dssp EEEEEECTTSSEEEEEET-TT----EEEEEETTTCCE
T ss_pred eEEEEECCCCCEEEEEeC-CC----cEEEEECCCCCc
Confidence 345678999998876533 33 799999999875
No 126
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=70.83 E-value=34 Score=33.73 Aligned_cols=33 Identities=9% Similarity=-0.146 Sum_probs=23.9
Q ss_pred eEEeC----CCCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 153 TCRVS----PDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 153 ~~~~S----pdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
.+.+| |||+++..+-...| ++.|+|..|++.+.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~----~v~ViD~~t~~~~~ 280 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPP----QYVIMDGETLEPKK 280 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETT----EEEEEETTTCCEEE
T ss_pred eeEEccccCCCCCEEEEEEccCC----eEEEEECCCCcEEE
Confidence 56789 79999887754333 46788998887643
No 127
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=70.62 E-value=25 Score=30.83 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=25.3
Q ss_pred EeeEEeCC---CCCEEEEEEcCCCCeEEEEEEEECCCCcccC
Q 040506 151 VGTCRVSP---DHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP 189 (365)
Q Consensus 151 ~~~~~~Sp---dg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~ 189 (365)
+..+.++| ++++++.+-. +| .|+++|+.+++.+.
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~ 248 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSL-EG----KFHVFDMRTQHPTK 248 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEES-TT----EEEEEEEEEEETTT
T ss_pred eEEEEcCCCCCCCCEEEEECC-CC----eEEEEeCcCCCccc
Confidence 45667999 9999888743 33 68999998876654
No 128
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=70.18 E-value=60 Score=29.16 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=20.0
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEE--ECCCCcc
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIK--DLRNQCI 187 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~--Dl~tg~~ 187 (365)
..+.+||||++|+++-..+| ++.++ |.++|+.
T Consensus 196 ~~~~~spdg~~l~v~~~~~~----~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGN----RICEYVIDPATHMP 229 (365)
T ss_dssp EEEEECTTSSEEEEEETTTT----EEEEEEECTTTCCE
T ss_pred CEeEECCCCCEEEEEECCCC----eEEEEEEeCCCCcE
Confidence 34679999998876644222 34555 4557764
No 129
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=69.44 E-value=6.1 Score=37.03 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=21.8
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
-.+.++|||++|+.+-. ...|+++|+.++..
T Consensus 213 ~~~~~~~~~~~l~~g~~-----dg~i~~wd~~~~~~ 243 (435)
T 4e54_B 213 CSLDVSASSRMVVTGDN-----VGNVILLNMDGKEL 243 (435)
T ss_dssp CCEEEETTTTEEEEECS-----SSBEEEEESSSCBC
T ss_pred EEEEECCCCCEEEEEeC-----CCcEeeeccCccee
Confidence 34678999999886532 23689999976543
No 130
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=69.44 E-value=32 Score=31.22 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=44.1
Q ss_pred EeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------------eEEEEECCCCCCCCccE
Q 040506 155 RVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP----------------------------RVLCTKLGSDSTDDAPI 206 (365)
Q Consensus 155 ~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~----------------------------~v~~h~lGt~~~~d~lv 206 (365)
.++|||++||.+-. .| .|+++|+.+++.+. .|+.|.+.+.. -...
T Consensus 104 ~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~ 176 (420)
T 3vl1_A 104 TAKLQMRRFILGTT-EG----DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRT 176 (420)
T ss_dssp EECSSSCEEEEEET-TS----CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--CCEE
T ss_pred EEecCCCEEEEEEC-CC----CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--CceE
Confidence 58899999988744 33 58999998876432 46666665432 1223
Q ss_pred EeeCCCCeEEEEEEcCCCcEEEEEeCC
Q 040506 207 FTEGDSGFCVDITSTKDGKFITVNSNS 233 (365)
Q Consensus 207 f~e~d~~~~~~~~~s~d~~~l~i~~~~ 233 (365)
+.... ..-..+..++|+++|+..+..
T Consensus 177 ~~~h~-~~v~~~~~~~~~~~l~s~~~d 202 (420)
T 3vl1_A 177 LIGHR-ATVTDIAIIDRGRNVLSASLD 202 (420)
T ss_dssp EECCS-SCEEEEEEETTTTEEEEEETT
T ss_pred EcCCC-CcEEEEEEcCCCCEEEEEcCC
Confidence 33222 223446678899888755544
No 131
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=69.07 E-value=15 Score=33.15 Aligned_cols=33 Identities=6% Similarity=0.111 Sum_probs=24.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+....++|++++|+-+-. + .+|++||+++|+.+
T Consensus 157 v~~~~~~~~~~~l~t~s~-D----~~v~lwd~~~~~~~ 189 (354)
T 2pbi_B 157 LSACSFTNSDMQILTASG-D----GTCALWDVESGQLL 189 (354)
T ss_dssp EEEEEECSSSSEEEEEET-T----SEEEEEETTTCCEE
T ss_pred EEEEEEeCCCCEEEEEeC-C----CcEEEEeCCCCeEE
Confidence 345678999988775422 2 37999999999864
No 132
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=68.53 E-value=3.5 Score=38.43 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=27.4
Q ss_pred EeeEEeCCCCCEEE-------------EEEcCC-------CCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLA-------------YTIDTS-------GDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la-------------~~~d~~-------G~e~~~l~v~Dl~tg~~l 188 (365)
+..+.+||||+.++ ++...+ |++..+|+|||++||+.+
T Consensus 159 V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l 216 (356)
T 2w18_A 159 VEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL 216 (356)
T ss_dssp EEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE
Confidence 33577899998744 444223 677789999999999853
No 133
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=68.48 E-value=4.3 Score=36.79 Aligned_cols=30 Identities=3% Similarity=-0.035 Sum_probs=22.3
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+..+++||||++||.+- ....|+++|+.++
T Consensus 14 v~~~~~s~~g~~l~~~~-----~d~~i~iw~~~~~ 43 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTT-----ATNQVELYEQDGN 43 (377)
T ss_dssp CSCCEECSSSSEEECCC-----SSSCBCEEEEETT
T ss_pred EEEEEECCCCCEEEEec-----CCCEEEEEEccCC
Confidence 44567999999888542 2346899999887
No 134
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=68.47 E-value=13 Score=33.43 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=23.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..++++|++++++-+ +...+|++||+.+|+.
T Consensus 79 V~~~~~~~~~~~l~s~-----s~D~~v~lwd~~~~~~ 110 (343)
T 2xzm_R 79 VSDLALSQENCFAISS-----SWDKTLRLWDLRTGTT 110 (343)
T ss_dssp EEEEEECSSTTEEEEE-----ETTSEEEEEETTSSCE
T ss_pred eEEEEECCCCCEEEEE-----cCCCcEEEEECCCCcE
Confidence 4456799999988743 2234799999999875
No 135
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=68.26 E-value=27 Score=31.39 Aligned_cols=81 Identities=10% Similarity=-0.004 Sum_probs=45.7
Q ss_pred EeeEEeCC-CCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCC--CCCCccEEeeCCCCeEEEEEEcCCCcEE
Q 040506 151 VGTCRVSP-DHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSD--STDDAPIFTEGDSGFCVDITSTKDGKFI 227 (365)
Q Consensus 151 ~~~~~~Sp-dg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~--~~~d~lvf~e~d~~~~~~~~~s~d~~~l 227 (365)
+..+++|| ||++|+.+-. + ..|+++|+.+++.+..+..|..... ...-...|.. +.. .+.+..++||++
T Consensus 253 v~~~~~s~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~-~~~~~~s~dg~~- 324 (383)
T 3ei3_B 253 VNAAYFNPTDSTKLLTTDQ-R----NEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP-MYD-LIVAGRYPDDQL- 324 (383)
T ss_dssp EEEEEECTTTSCEEEEEES-S----SEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECS-SSS-EEEEECBCCTTT-
T ss_pred eEEEEEcCCCCCEEEEEcC-C----CcEEEEECCCCccccccccccccccccccceEEeccC-CCC-ceEEEecCCccc-
Confidence 45678999 9999987643 2 3699999999987655554432211 1111123332 222 333566788876
Q ss_pred EEEeCCCcceEEEEEe
Q 040506 228 TVNSNSRASSEEGLCD 243 (365)
Q Consensus 228 ~i~~~~~~tsev~~~d 243 (365)
+. .....|++.|
T Consensus 325 ---s~-s~d~~i~iwd 336 (383)
T 3ei3_B 325 ---LL-NDKRTIDIYD 336 (383)
T ss_dssp ---CT-TCCCCEEEEE
T ss_pred ---cc-CCCCeEEEEe
Confidence 12 2234556555
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=68.17 E-value=7.6 Score=38.08 Aligned_cols=36 Identities=6% Similarity=0.003 Sum_probs=29.6
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
-.+.++|||+.|.+++-.+-++..+|.|+|.+|++.
T Consensus 482 ~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 482 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp EEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred EeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 356899999999998864445667899999999975
No 137
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=67.63 E-value=16 Score=35.31 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=23.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+..+++||||++||++.+ | .++|+|+.++
T Consensus 21 v~~~~~spdg~~l~~~~~--~----~v~v~~~~~~ 49 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPCG--K----SAFVRCLDDG 49 (615)
T ss_dssp CCCCEEETTTTEEEEEET--T----EEEEEECCSS
T ss_pred eeEEEECCCCCEEEEecC--C----eEEEEECCCC
Confidence 445689999999999862 3 6999999988
No 138
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=66.96 E-value=30 Score=37.10 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=25.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++||.+-. +| +|+|||+.+|+.+
T Consensus 660 v~~~~~s~~~~~l~s~~~-d~----~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 660 VLCCAFSSDDSYIATCSA-DK----KVKIWDSATGKLV 692 (1249)
T ss_dssp EEEEEECTTSSEEEEEET-TS----EEEEEETTTCCEE
T ss_pred EEEEEEecCCCEEEEEeC-CC----eEEEEECCCCceE
Confidence 445789999999987643 33 5999999998754
No 139
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=66.62 E-value=39 Score=30.37 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=24.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+.++|++++|+.+-. +| .|+++|+.+++.+
T Consensus 250 i~~~~~~~~~~~l~~~~~-d~----~i~i~d~~~~~~~ 282 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASD-DG----TLRIWHGGNGNSQ 282 (425)
T ss_dssp EEEEEEETTTTEEEEEET-TS----CEEEECSSSBSCS
T ss_pred eEEEEECCCCCEEEEEcC-CC----EEEEEECCCCccc
Confidence 455789999998887653 33 5999999988754
No 140
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=66.55 E-value=23 Score=31.43 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=23.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+..+.++|+|++|+.+-. +| .|+++|+.+++
T Consensus 55 v~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~~ 85 (372)
T 1k8k_C 55 VTGVDWAPDSNRIVTCGT-DR----NAYVWTLKGRT 85 (372)
T ss_dssp EEEEEEETTTTEEEEEET-TS----CEEEEEEETTE
T ss_pred ccEEEEeCCCCEEEEEcC-CC----eEEEEECCCCe
Confidence 445678999999887643 33 58999998875
No 141
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=66.41 E-value=5 Score=35.45 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=22.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+..+++||||++||-+-. +| .|+|||++||+
T Consensus 309 v~~l~~s~dg~~l~sgs~-Dg----~v~iW~~~tGt 339 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYT-DN----LVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEeC-CC----EEEEEeCCCcC
Confidence 445689999999875432 33 69999999996
No 142
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=66.17 E-value=35 Score=33.65 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=39.5
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECC--CCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEc----CCCcE
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR--NQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITST----KDGKF 226 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~--tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s----~d~~~ 226 (365)
.+.+||||+++..+ +..| .|.++|+. |++. +.....|.. + .++..| +||++
T Consensus 201 ~v~~SpDGr~lyv~-~~dg----~V~viD~~~~t~~~---v~~i~~G~~-------------P--~~ia~s~~~~pDGk~ 257 (567)
T 1qks_A 201 ISRLSASGRYLFVI-GRDG----KVNMIDLWMKEPTT---VAEIKIGSE-------------A--RSIETSKMEGWEDKY 257 (567)
T ss_dssp EEEECTTSCEEEEE-ETTS----EEEEEETTSSSCCE---EEEEECCSE-------------E--EEEEECCSTTCTTTE
T ss_pred ceEECCCCCEEEEE-cCCC----eEEEEECCCCCCcE---eEEEecCCC-------------C--ceeEEccccCCCCCE
Confidence 56899999987665 3333 69999996 6654 223333321 1 235567 58888
Q ss_pred EEEEeCCCcceEEEEEe
Q 040506 227 ITVNSNSRASSEEGLCD 243 (365)
Q Consensus 227 l~i~~~~~~tsev~~~d 243 (365)
+++.... .+.+.++|
T Consensus 258 l~v~n~~--~~~v~ViD 272 (567)
T 1qks_A 258 AIAGAYW--PPQYVIMD 272 (567)
T ss_dssp EEEEEEE--TTEEEEEE
T ss_pred EEEEEcc--CCeEEEEE
Confidence 8776432 23445555
No 143
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=66.07 E-value=29 Score=36.22 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=19.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+..+++||||++||.+-.. | +|+|||..+++
T Consensus 20 V~~lafspdg~~lAsgs~D-g----~I~lw~~~~~~ 50 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVT-G----EVHIYGQQQVE 50 (902)
T ss_dssp EEEEEEETTTTEEEEEETT-S----EEEEECSTTCE
T ss_pred cEEEEECCCCCEEEEEeCC-C----EEEEEeCCCcE
Confidence 3445678888887776442 2 57777766554
No 144
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=65.89 E-value=22 Score=32.97 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=22.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+..++++|++++++++-+..| .|+++|+.++
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg----~v~vwd~~~~ 310 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADK----TVALWDLRNL 310 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTS----EEEEEETTCT
T ss_pred eEEEEeCCCCCCEEEEEeCCC----eEEEEeCCCC
Confidence 446778999986555544444 5999999884
No 145
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=65.25 E-value=59 Score=27.87 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=20.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+..+++||||++||.+-. .| .|+++|+.++
T Consensus 14 v~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~ 43 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSS-DQ----HIKVFKLDKD 43 (351)
T ss_dssp EEEEEECSSSSEEEEEET-TS----EEEEEEECSS
T ss_pred eeEEEEcCCCCEEEEeeC-CC----eEEEEECCCC
Confidence 445678888888876643 22 6888888765
No 146
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=65.18 E-value=36 Score=29.85 Aligned_cols=32 Identities=16% Similarity=-0.051 Sum_probs=25.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..++++|||++|+.+-. +| .|+++|+.+++.
T Consensus 89 v~~~~~~~~~~~l~s~~~-dg----~v~iwd~~~~~~ 120 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASC-DK----TAKMWDLSSNQA 120 (368)
T ss_dssp EEEEEECTTSSEEEEEET-TS----EEEEEETTTTEE
T ss_pred EEEEEECcCCCEEEEEcC-CC----cEEEEEcCCCCc
Confidence 456789999999986533 33 799999999875
No 147
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=64.31 E-value=13 Score=37.11 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=40.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCc-cEEeeCCC-CeEEEEEEcCCCcEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDA-PIFTEGDS-GFCVDITSTKDGKFIT 228 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~-lvf~e~d~-~~~~~~~~s~d~~~l~ 228 (365)
+..+++||++.+++.+.+ + .|+|+|+.+++.+..+..+........+. -....... -+..++..|+||++|+
T Consensus 605 v~~~~~sp~~~~l~~~~~-~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAATE-H-----GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp EEEEEECSSSSEEEEEET-T-----EEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred EEEEEEcCCCcEEEEEcC-C-----CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 456789999998887654 2 29999999997643221110000000000 00000011 1234577899999987
Q ss_pred EEeCC
Q 040506 229 VNSNS 233 (365)
Q Consensus 229 i~~~~ 233 (365)
..+..
T Consensus 679 sgs~D 683 (694)
T 3dm0_A 679 SGYTD 683 (694)
T ss_dssp EEETT
T ss_pred EEcCC
Confidence 65443
No 148
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=64.30 E-value=39 Score=30.27 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=45.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEee-CCCCeEEEEEEcCCCcEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTE-GDSGFCVDITSTKDGKFITV 229 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e-~d~~~~~~~~~s~d~~~l~i 229 (365)
+..++++|+|++|+.+-..+ ....|+++|+.+++.+ .... +... ....+... .....-..+..++++++|+.
T Consensus 236 i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~---~~~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 308 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERI---GSLS-VPTH-SSQASLGEFAHSSWVMSLSFNDSGETLCS 308 (397)
T ss_dssp EEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEE---EEEC-BC---------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred cceEEECCCCCEEEEEecCC--CCceEEEEECCCCccc---ceec-cCcc-cccccccccccCCcEEEEEECCCCCEEEE
Confidence 45668999999998764421 1268999999998742 1111 1000 00011110 01122345677999998876
Q ss_pred EeCCCcceEEEEEeC
Q 040506 230 NSNSRASSEEGLCDR 244 (365)
Q Consensus 230 ~~~~~~tsev~~~d~ 244 (365)
.... ..|++.+.
T Consensus 309 ~~~d---g~i~iwd~ 320 (397)
T 1sq9_A 309 AGWD---GKLRFWDV 320 (397)
T ss_dssp EETT---SEEEEEET
T ss_pred EeCC---CeEEEEEc
Confidence 5533 35666664
No 149
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=64.14 E-value=26 Score=33.70 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=40.3
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeC---CCCeEEEEEEcCCCcEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEG---DSGFCVDITSTKDGKFI 227 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~---d~~~~~~~~~s~d~~~l 227 (365)
...+.+|||||+|-++-- |.+ .|.++|+.....+..+-...+|........+ .+. -.+.. +..|+||++|
T Consensus 323 pa~I~lS~DGrfLYVSnr--g~d--~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~-~G~~~~ggPr~--~~lSpDGk~L 395 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLW--GIG--EVRQYDISNPFKPVLTGKVKLGGIFHRADHP-AGHKLTGAPQM--LEISRDGRRV 395 (462)
T ss_dssp CCCEEECTTSCEEEEEET--TTT--EEEEEECSSTTSCEEEEEEECBTTTTCBCCT-TSCCCCSCCCC--EEECTTSSEE
T ss_pred eeEEEECCCCCEEEEEeC--CCC--EEEEEEecCCCCcEEEEEEEeCCeecccccc-ccccCCCCCCE--EEEcCCCCEE
Confidence 456789999998776644 333 5888998633222234444555321000000 000 01222 4679999999
Q ss_pred EEEe
Q 040506 228 TVNS 231 (365)
Q Consensus 228 ~i~~ 231 (365)
++..
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8864
No 150
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=63.73 E-value=29 Score=32.07 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=24.3
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+.++|++++|+-+-. + .+|+|||+.+|+.+
T Consensus 111 V~~~~~~p~~~~l~s~s~-D----g~i~vwd~~~~~~~ 143 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSASE-D----ATIKVWDYETGDFE 143 (410)
T ss_dssp EEEEEECSSSSEEEEEES-S----SCEEEEETTTCCCC
T ss_pred EEEEEEcCCCCEEEEEeC-C----CeEEEEECCCCcEE
Confidence 445679999998776533 2 36999999998764
No 151
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=63.43 E-value=51 Score=31.41 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=22.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+++||||++||.+-. ..+|+++|. +|+.
T Consensus 470 v~~~~~spd~~~las~~~-----d~~i~iw~~-~~~~ 500 (577)
T 2ymu_A 470 VRGVAFSPDGQTIASASD-----DKTVKLWNR-NGQL 500 (577)
T ss_dssp EEEEEECTTSCEEEEEET-----TSEEEEEET-TSCE
T ss_pred EEEEEEcCCCCEEEEEeC-----CCEEEEEcC-CCCE
Confidence 445789999999987643 236899995 5543
No 152
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=63.39 E-value=36 Score=29.99 Aligned_cols=33 Identities=3% Similarity=-0.100 Sum_probs=21.2
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
++.++||| + +|..+ +......|+++|++||+.+
T Consensus 25 Gl~~~~dg-~-Lyvst-g~~~~s~v~~iD~~tg~v~ 57 (266)
T 2iwa_A 25 GLVYAEND-T-LFEST-GLYGRSSVRQVALQTGKVE 57 (266)
T ss_dssp EEEECSTT-E-EEEEE-CSTTTCEEEEEETTTCCEE
T ss_pred cEEEeCCC-e-EEEEC-CCCCCCEEEEEECCCCCEE
Confidence 45688886 3 44433 1123346999999999865
No 153
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=63.02 E-value=42 Score=29.42 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=21.7
Q ss_pred eeEEeCCC----CCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 152 GTCRVSPD----HNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 152 ~~~~~Spd----g~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
..++++|+ |++|+.+-. +| .|+++|+.+++.+
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~~-dg----~i~v~d~~~~~~~ 108 (366)
T 3k26_A 73 YTCAWTYDSNTSHPLLAVAGS-RG----IIRIINPITMQCI 108 (366)
T ss_dssp EEEEEEECTTTCCEEEEEEET-TC----EEEEECTTTCCEE
T ss_pred EEEEeccCCCCCCCEEEEecC-CC----EEEEEEchhceEe
Confidence 34567777 567766543 33 7999999988754
No 154
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=62.25 E-value=16 Score=33.76 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=23.8
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..++++|+|++||-+-. + .+|++||+.+++.+
T Consensus 153 V~~v~~~~~~~~l~sgs~-D----~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 153 VQDISFDHSGKLLASCSA-D----MTIKLWDFQGFECI 185 (410)
T ss_dssp EEEEEECTTSSEEEEEET-T----SCCCEEETTSSCEE
T ss_pred EEEEEEcCCCCEEEEEeC-C----CeEEEEeCCCCcee
Confidence 455678999998876533 2 35899999887643
No 155
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=61.82 E-value=21 Score=32.26 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=41.5
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC-eEEEEECCCC-CCCCccEE--eeCCCC-eEEEEEEcCCCc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP-RVLCTKLGSD-STDDAPIF--TEGDSG-FCVDITSTKDGK 225 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~-~v~~h~lGt~-~~~d~lvf--~e~d~~-~~~~~~~s~d~~ 225 (365)
+..+++||+|++||.+-. +| .|+++|+.+++... .++.+.-+.- .....++. ...... .-..+..++|++
T Consensus 333 i~~~~~s~~~~~l~~~~~-dg----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFM-DG----QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred EEEEEEcCCCCEEEEEEC-CC----eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence 456789999999988754 33 69999998876321 1111111100 00001222 222111 344577899999
Q ss_pred EEEEEeCCC
Q 040506 226 FITVNSNSR 234 (365)
Q Consensus 226 ~l~i~~~~~ 234 (365)
+|+.....+
T Consensus 408 ~l~~~~~dg 416 (425)
T 1r5m_A 408 KISVAYSLQ 416 (425)
T ss_dssp EEEEEESSS
T ss_pred eEEEEecCc
Confidence 887665443
No 156
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=59.96 E-value=26 Score=31.46 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=45.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
+..+.++|++++++++-+.+| .|+++|+.++......+...-+.........+.. ....-..+..++++++|+..
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADS----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTA-HNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTS----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS-CSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCCCcEEEEEcCCC----cEEEEECCCCCcccccccccccccceeecccccc-ccCceeEEEEcCCCCEEEEe
Confidence 445679999997655555555 4999999887632111100001111010111111 12233456789999998776
Q ss_pred eCCCcceEEEEEeC
Q 040506 231 SNSRASSEEGLCDR 244 (365)
Q Consensus 231 ~~~~~tsev~~~d~ 244 (365)
...+ .+.+.+.
T Consensus 264 ~~dg---~i~vwd~ 274 (408)
T 4a11_B 264 GTDN---RMRLWNS 274 (408)
T ss_dssp ETTS---CEEEEET
T ss_pred cCCC---eEEEEEC
Confidence 5443 4666663
No 157
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=59.84 E-value=55 Score=29.84 Aligned_cols=73 Identities=15% Similarity=0.378 Sum_probs=44.9
Q ss_pred EeeEEeCCCC-CEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCC-----------CeEEEE
Q 040506 151 VGTCRVSPDH-NFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDS-----------GFCVDI 218 (365)
Q Consensus 151 ~~~~~~Spdg-~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~-----------~~~~~~ 218 (365)
+..++++|+| ++|+.+-. +| +|+++|+.+++... ....+|..... .....+
T Consensus 229 v~~~~~~p~~~~~l~s~~~-dg----~i~iwd~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (447)
T 3dw8_B 229 ITAAEFHPNSCNTFVYSSS-KG----TIRLCDMRASALCD------------RHSKLFEEPEDPSNRSFFSEIISSISDV 291 (447)
T ss_dssp EEEEEECSSCTTEEEEEET-TS----CEEEEETTTCSSSC------------TTCEEECCC-----CCHHHHHTTCEEEE
T ss_pred eEEEEECCCCCcEEEEEeC-CC----eEEEEECcCCcccc------------ceeeEeccCCCccccccccccCceEEEE
Confidence 4567899999 77777654 33 79999999987421 00122322211 123457
Q ss_pred EEcCCCcEEEEEeCCCcceEEEEEeC
Q 040506 219 TSTKDGKFITVNSNSRASSEEGLCDR 244 (365)
Q Consensus 219 ~~s~d~~~l~i~~~~~~tsev~~~d~ 244 (365)
..+++|++|+.... ..|.+.|.
T Consensus 292 ~~s~~g~~l~~~~~----~~v~iwd~ 313 (447)
T 3dw8_B 292 KFSHSGRYMMTRDY----LSVKVWDL 313 (447)
T ss_dssp EECTTSSEEEEEES----SEEEEEET
T ss_pred EECCCCCEEEEeeC----CeEEEEeC
Confidence 78999999875543 45666664
No 158
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=59.35 E-value=17 Score=33.39 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=22.9
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+++||||++|+.+ + +...|+|||+.+++.+
T Consensus 348 ~~~s~~~~~l~s~-s----~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 348 CCWNGSDSVVMTG-S----YNNFFRMFDRNTKRDI 377 (447)
T ss_dssp EEECTTSSEEEEE-C----STTEEEEEETTTCCEE
T ss_pred EEECCCCCEEEEe-c----cCCEEEEEEcCCCcce
Confidence 6899999998543 2 2337999999999753
No 159
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=58.32 E-value=31 Score=30.14 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=25.5
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+..+++||+|++|+.+-. .| .|+++|+.+++.
T Consensus 253 ~i~~~~~s~~~~~l~~~~~-dg----~i~vwd~~~~~~ 285 (342)
T 1yfq_A 253 PVNSIEFSPRHKFLYTAGS-DG----IISCWNLQTRKK 285 (342)
T ss_dssp CEEEEEECTTTCCEEEEET-TS----CEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEEEecC-Cc----eEEEEcCccHhH
Confidence 4556789999999886654 33 599999999874
No 160
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=58.29 E-value=72 Score=28.73 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=23.3
Q ss_pred EeeEEeCCCCC-EEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHN-FLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~-~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..++++|+|+ +|+.+ +..| .|+++|+.+++.
T Consensus 293 v~~~~~~~~~~~~l~~g-~~dg----~i~vwd~~~~~~ 325 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAG-YENG----MLAQWDLRSPEC 325 (420)
T ss_dssp EEEEEECSSCTTEEEEE-ETTS----EEEEEETTCTTS
T ss_pred ceeEEEeCCCCCEEEEE-eCCC----eEEEEEcCCCcC
Confidence 45678999999 55544 3333 699999999864
No 161
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=57.29 E-value=22 Score=37.26 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=26.4
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
.+..+++||||++||.+-. +| +++|||+.+++.
T Consensus 490 ~V~svafspdg~~LAsgs~-Dg----tV~lwd~~~~~~ 522 (902)
T 2oaj_A 490 AVDKISFAAETLELAVSIE-TG----DVVLFKYEVNQF 522 (902)
T ss_dssp CEEEEEEETTTTEEEEEET-TS----CEEEEEEEECCC
T ss_pred ceeEEEecCCCCeEEEEec-Cc----EEEEEEecCccc
Confidence 3567789999999999865 33 799999998853
No 162
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=56.86 E-value=30 Score=34.41 Aligned_cols=77 Identities=9% Similarity=0.013 Sum_probs=46.4
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC-------eEEEEECCCCCC------CCccEEeeCCCCeEEEE
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP-------RVLCTKLGSDST------DDAPIFTEGDSGFCVDI 218 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~-------~v~~h~lGt~~~------~d~lvf~e~d~~~~~~~ 218 (365)
...++||||+++|=+ +...+++ |..+++.+. .|-.+..|+... +-..++.-...++-..+
T Consensus 19 ~sv~~SpDG~~iASa-----s~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v 91 (588)
T 2j04_A 19 NNLTWARDGTLYLTT-----FPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC 91 (588)
T ss_dssp CCEEECTTSCEEEEC-----SSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE
T ss_pred EEEEECCCCCEEEEE-----cCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE
Confidence 355799999999854 3344565 777776554 454455553210 11123321123456678
Q ss_pred EEcCCCcEEEEEeCCCc
Q 040506 219 TSTKDGKFITVNSNSRA 235 (365)
Q Consensus 219 ~~s~d~~~l~i~~~~~~ 235 (365)
..|+||++|...++.+.
T Consensus 92 awSPdG~~LAs~s~dg~ 108 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGN 108 (588)
T ss_dssp EECSSSSCEEEEETTSC
T ss_pred EECCCCCEEEEEeCCCc
Confidence 88999999988776654
No 163
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=56.82 E-value=22 Score=31.49 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=18.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR 183 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~ 183 (365)
+..+++||||++||.+-. +| .|+|+|+.
T Consensus 14 v~~~~~s~~~~~l~~~~~-dg----~i~iw~~~ 41 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSS-DK----TIKIFEVE 41 (379)
T ss_dssp EEEEEECSSSSEEEEEET-TS----CEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEC-CC----cEEEEecC
Confidence 344567888888776643 22 47777776
No 164
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=55.94 E-value=60 Score=29.86 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=13.3
Q ss_pred CCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 159 DHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 159 dg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
++++++.+-..+- |+++|+.+++.
T Consensus 288 ~~~~l~~~~~d~~-----i~i~d~~~~~~ 311 (445)
T 2ovr_B 288 DGIHVVSGSLDTS-----IRVWDVETGNC 311 (445)
T ss_dssp CSSEEEEEETTSC-----EEEEETTTCCE
T ss_pred CCCEEEEEeCCCe-----EEEEECCCCCE
Confidence 5666666555553 55555555543
No 165
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=55.93 E-value=47 Score=29.24 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=22.6
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
++.+++||+++..+ + |+. +|+++|.+|.+.+
T Consensus 109 g~glt~Dg~~l~vs-~--gs~--~l~viD~~t~~v~ 139 (266)
T 2iwa_A 109 GWGLATDGKILYGS-D--GTS--ILYEIDPHTFKLI 139 (266)
T ss_dssp CCEEEECSSSEEEE-C--SSS--EEEEECTTTCCEE
T ss_pred eEEEEECCCEEEEE-C--CCC--eEEEEECCCCcEE
Confidence 34588899887654 3 544 6999999998764
No 166
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=55.87 E-value=44 Score=29.20 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=25.8
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||+|+.++.+-+.. .+...|+++|+.+++..
T Consensus 21 v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~ 57 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLK 57 (357)
T ss_dssp EEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEE
T ss_pred eEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCccc
Confidence 44668999998877664421 12557999999998753
No 167
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=54.93 E-value=48 Score=33.28 Aligned_cols=30 Identities=13% Similarity=0.323 Sum_probs=22.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
+..+++||||++|+.+-. + .+++++|+.++
T Consensus 100 v~~~~~s~~~~~l~~~~~-d----g~i~vw~~~~~ 129 (814)
T 3mkq_A 100 IRSIAVHPTKPYVLSGSD-D----LTVKLWNWENN 129 (814)
T ss_dssp EEEEEECSSSSEEEEEET-T----SEEEEEEGGGT
T ss_pred EEEEEEeCCCCEEEEEcC-C----CEEEEEECCCC
Confidence 445689999999886543 2 36899999887
No 168
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=54.70 E-value=8.4 Score=35.30 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=24.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.+||||++||-+-. ..+|+|||+.+++.
T Consensus 69 V~~~~~sp~~~~l~s~s~-----D~~v~iWd~~~~~~ 100 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQ-----DGRLIVWNALTSQK 100 (380)
T ss_dssp EEEEEECTTSSCEEEEET-----TSEEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCcc
Confidence 445679999998875522 33799999999875
No 169
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=53.48 E-value=39 Score=30.13 Aligned_cols=73 Identities=5% Similarity=-0.013 Sum_probs=43.6
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEe
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNS 231 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~ 231 (365)
..+++||||++|.++ +. .++++|+++++... . .+.... ...--++..++++..|++..
T Consensus 228 ~~la~~~d~~~lyv~-~~------~v~~~d~~t~~~~~--------~------~~~~~~-~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 228 SEVQLNGTRDTLYWI-NN------DIWRMPVEADRVPV--------R------PFLEFR-DTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp EEEEECTTSCEEEEE-SS------SEEEEETTCSSCCS--------S------CSBCCC-SSCEEEEEECTTTCCEEEEE
T ss_pred eeEEEecCCCEEEEE-cc------EEEEEECCCCceee--------e------eeecCC-CCceEEEEEcCCCCeEEEEc
Confidence 457899999876654 32 78899999987521 0 011100 12233467888777777765
Q ss_pred CC--CcceEEEEEeCCC
Q 040506 232 NS--RASSEEGLCDRCD 246 (365)
Q Consensus 232 ~~--~~tsev~~~d~~~ 246 (365)
.. .....|++++.+.
T Consensus 286 ~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 286 AIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp CTTSSSEEEEEEECTTC
T ss_pred ccccccCCEEEEECCCC
Confidence 32 1246788877554
No 170
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.17 E-value=48 Score=32.93 Aligned_cols=70 Identities=11% Similarity=-0.018 Sum_probs=44.6
Q ss_pred CeEEEeeEEeCCCCCEEEEEEcCCCCe--------EEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEE
Q 040506 147 GYVHVGTCRVSPDHNFLAYTIDTSGDE--------QFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDI 218 (365)
Q Consensus 147 ~~~~~~~~~~Spdg~~la~~~d~~G~e--------~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~ 218 (365)
.+.....+.++|+|+ |-++.|.+++. ...+.+.+..+|+. ..++..+...-..++
T Consensus 474 ~f~~PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~----------------~rf~~~P~gaE~TG~ 536 (592)
T 3zwu_A 474 MFNSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEI----------------RRFMVGPIGCEVTGI 536 (592)
T ss_dssp CCCCEEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE----------------EEEEECCTTCEEEEE
T ss_pred CccCCcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeE----------------EEEEeCCCCccCcCe
Confidence 355678899999998 66677754321 12344445555542 233444444567788
Q ss_pred EEcCCCcEEEEEeCC
Q 040506 219 TSTKDGKFITVNSNS 233 (365)
Q Consensus 219 ~~s~d~~~l~i~~~~ 233 (365)
..|+|+++||+++-+
T Consensus 537 ~fspDg~tlfvniQH 551 (592)
T 3zwu_A 537 SFSPDQKTLFVGIQH 551 (592)
T ss_dssp EECTTSSEEEEEEES
T ss_pred eECCCCCEEEEEEEC
Confidence 899999999998644
No 171
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=52.94 E-value=1.1e+02 Score=26.27 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=18.6
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
.+++||||++||-+-. ..+|+|+|+.++
T Consensus 14 ~~~~s~~g~~las~s~-----D~~v~iw~~~~~ 41 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSS-----DKTIKIFEVEGE 41 (297)
T ss_dssp EEEECTTSSEEEEEET-----TSCEEEEEBCSS
T ss_pred EEEECCCCCEEEEEeC-----CCEEEEEecCCC
Confidence 4568888888876532 235888887643
No 172
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=52.08 E-value=80 Score=33.67 Aligned_cols=33 Identities=18% Similarity=-0.003 Sum_probs=25.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||+++|.+-. +| +|+|||+.+|+.+
T Consensus 618 v~~~~~s~~~~~l~s~~~-d~----~i~vw~~~~~~~~ 650 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGA-DK----TLQVFKAETGEKL 650 (1249)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTTCCEE
T ss_pred EEEEEECCCCCEEEEEeC-CC----eEEEEECCCCCEE
Confidence 445689999999987643 33 6999999998754
No 173
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=51.70 E-value=1.2e+02 Score=27.76 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=20.1
Q ss_pred eeEEeCCCCC-EEEEEEcCCCCeEEEEEEEECCCC
Q 040506 152 GTCRVSPDHN-FLAYTIDTSGDEQFMLQIKDLRNQ 185 (365)
Q Consensus 152 ~~~~~Spdg~-~la~~~d~~G~e~~~l~v~Dl~tg 185 (365)
..++++|+++ +|+.+ +.+| .|+++|+.++
T Consensus 185 ~~l~~~~~~~~~l~s~-~~dg----~i~vwd~~~~ 214 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSA-SDDH----TICLWDINAT 214 (430)
T ss_dssp CCEEECTTSTTEEEEE-CTTS----CEEEEETTSC
T ss_pred EEEEeCCCCCCeEEEE-eCCC----eEEEEeCCCC
Confidence 4567899998 55544 4344 5899999874
No 174
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=51.61 E-value=13 Score=34.60 Aligned_cols=33 Identities=18% Similarity=0.048 Sum_probs=24.5
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+++||||++|+-+-. + .+|+|||+.++...
T Consensus 299 v~~~~~spdg~~l~s~~~-D----~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 299 VNAACFSPDGARLLTTDQ-K----SEIRVYSASQWDCP 331 (435)
T ss_dssp EEECCBCTTSSEEEEEES-S----SCEEEEESSSSSSE
T ss_pred ccceeECCCCCeeEEEcC-C----CEEEEEECCCCccc
Confidence 445678999999876532 2 36999999998754
No 175
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=51.03 E-value=52 Score=31.49 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=25.2
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.+||||++||.+-. +| .|+++|+.+++.
T Consensus 491 v~~~~~s~~g~~l~~~~~-dg----~i~iw~~~~~~~ 522 (615)
T 1pgu_A 491 PSYISISPSETYIAAGDV-MG----KILLYDLQSREV 522 (615)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTTTEE
T ss_pred eEEEEECCCCCEEEEcCC-CC----eEEEeeCCCCcc
Confidence 446789999999998754 33 499999999875
No 176
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=50.69 E-value=17 Score=32.15 Aligned_cols=30 Identities=20% Similarity=0.088 Sum_probs=18.4
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
..+++||||++||-+-. ..+|+++|+.++.
T Consensus 17 ~~v~~s~~g~~lasgs~-----D~~v~lwd~~~~~ 46 (316)
T 3bg1_A 17 HDAQMDYYGTRLATCSS-----DRSVKIFDVRNGG 46 (316)
T ss_dssp EEEEECGGGCEEEEEET-----TTEEEEEEEETTE
T ss_pred EEeeEcCCCCEEEEEeC-----CCeEEEEEecCCC
Confidence 34567788887765422 2357777776653
No 177
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=49.50 E-value=92 Score=28.28 Aligned_cols=27 Identities=11% Similarity=-0.240 Sum_probs=14.7
Q ss_pred CCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 157 SPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 157 Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+|||++++-+ +.+ .+++++|+.++...
T Consensus 264 ~~dg~~l~s~-s~d----~~i~vwd~~~~~~~ 290 (393)
T 4gq1_A 264 GSDGSGILAM-CKS----GAWLRWNLFANNDY 290 (393)
T ss_dssp TTTTCEEEEE-CTT----SEEEEEEC------
T ss_pred cCCCCEEEEE-eCC----CCEEEEECccCCCC
Confidence 5899887644 222 36899999887643
No 178
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=49.36 E-value=1.2e+02 Score=26.91 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=23.5
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
++...++++++.++++-+.. .+|++||+.+|+.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d----~~v~iWd~~~~~~~ 94 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVK----EVVHIWDDVKKQDV 94 (355)
T ss_dssp CCEEEECTTSSEEEEECSST----TEEEEEETTTTEEE
T ss_pred eEEEEEcCCCCEEEEEECCc----cEEEEEECCCCcEE
Confidence 34456788888887653322 28999999988654
No 179
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=49.23 E-value=35 Score=29.97 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=38.4
Q ss_pred eEEeCCC--CCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCC-CCeEEEEEEcCCCcEEEE
Q 040506 153 TCRVSPD--HNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGD-SGFCVDITSTKDGKFITV 229 (365)
Q Consensus 153 ~~~~Spd--g~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d-~~~~~~~~~s~d~~~l~i 229 (365)
.+++||| |++|+.+-. +| .|+++|+.+++.+..... .+.... ...-..+..++|+++|+.
T Consensus 290 ~~~~s~~~~~~~l~~~~~-dg----~i~vwd~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~s 352 (366)
T 3k26_A 290 YMRFSMDFWQKMLALGNQ-VG----KLYVWDLEVEDPHKAKCT------------TLTHHKCGAAIRQTSFSRDSSILIA 352 (366)
T ss_dssp CCCCEECTTSSEEEEECT-TS----CEEEEECCSSSGGGCEEE------------EECCTTCCSCEEEEEECTTSSEEEE
T ss_pred EEEEcCCCCCcEEEEEec-CC----cEEEEECCCCCCccccce------------EEcccccCCceEEEEeCCCCCeEEE
Confidence 4567777 999987733 33 699999999875421111 111110 122345677899998876
Q ss_pred EeCC
Q 040506 230 NSNS 233 (365)
Q Consensus 230 ~~~~ 233 (365)
....
T Consensus 353 ~~~d 356 (366)
T 3k26_A 353 VCDD 356 (366)
T ss_dssp EETT
T ss_pred EeCC
Confidence 5443
No 180
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=48.42 E-value=52 Score=28.93 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=23.2
Q ss_pred EeeEEeCC-------------CCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSP-------------DHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Sp-------------dg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.++| |+++++.+-. +| .|+++|+.++..
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~ 194 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGA-DN----LVKIWKYNSDAQ 194 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEET-TS----CEEEEEEETTTT
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeC-CC----eEEEEEecCCCc
Confidence 34567888 6888887755 33 599999988764
No 181
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=46.95 E-value=1e+02 Score=30.62 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=39.4
Q ss_pred C-CCCCEEEEEE------cC-------CCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcC
Q 040506 157 S-PDHNFLAYTI------DT-------SGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTK 222 (365)
Q Consensus 157 S-pdg~~la~~~------d~-------~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~ 222 (365)
+ ||++++..+- .. .......+.++|.+|.+. +|...+|..+ + .+..++
T Consensus 143 ~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v---~~qI~Vgg~p----------d-----~~~~sp 204 (595)
T 1fwx_A 143 KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV---AWQVLVSGNL----------D-----NCDADY 204 (595)
T ss_dssp CSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEE---EEEEEESSCC----------C-----CEEECS
T ss_pred ecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeE---EEEEEeCCCc----------c-----ceEECC
Confidence 5 8888886662 11 234566899999999874 4444443221 1 245688
Q ss_pred CCcEEEEEeCCC
Q 040506 223 DGKFITVNSNSR 234 (365)
Q Consensus 223 d~~~l~i~~~~~ 234 (365)
||+|+++++...
T Consensus 205 dGk~~~vt~~~s 216 (595)
T 1fwx_A 205 EGKWAFSTSYNS 216 (595)
T ss_dssp SSSEEEEEESCT
T ss_pred CCCEEEEEecCc
Confidence 999999988664
No 182
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=46.64 E-value=1.3e+02 Score=25.32 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=22.0
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..+.++|+++ ++.+ +.+| .|+++|+.+++.+
T Consensus 187 i~~~~~~~~~~-~~~~-~~dg----~i~i~d~~~~~~~ 218 (313)
T 3odt_A 187 VRHLAVVDDGH-FISC-SNDG----LIKLVDMHTGDVL 218 (313)
T ss_dssp EEEEEEEETTE-EEEE-ETTS----EEEEEETTTCCEE
T ss_pred EEEEEEcCCCe-EEEc-cCCC----eEEEEECCchhhh
Confidence 44567889998 4433 2233 6999999998754
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=46.49 E-value=45 Score=29.68 Aligned_cols=71 Identities=11% Similarity=-0.055 Sum_probs=40.4
Q ss_pred eeEEeCCCCCEEEEEEcCCCC-------eEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCC
Q 040506 152 GTCRVSPDHNFLAYTIDTSGD-------EQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDG 224 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~-------e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~ 224 (365)
..+.++|||++++. +.++. +...|+++|.+|++.+ ....++. ...+. .+..++|+
T Consensus 175 ~~i~~~~dG~l~v~--~~~~~~~~~~~~~~~~v~~id~~t~~v~---~~~~~~~-----------g~~p~--~la~~~d~ 236 (328)
T 3dsm_A 175 TSLVMDKYNKMWTI--TDGGYEGSPYGYEAPSLYRIDAETFTVE---KQFKFKL-----------GDWPS--EVQLNGTR 236 (328)
T ss_dssp CCCEECTTSEEEEE--BCCBCTTCSSCBCCCEEEEEETTTTEEE---EEEECCT-----------TCCCE--EEEECTTS
T ss_pred cceEEcCCCCEEEE--ECCCccCCccccCCceEEEEECCCCeEE---EEEecCC-----------CCCce--eEEEecCC
Confidence 35678899984332 32221 1357999999988752 1122211 01122 35678999
Q ss_pred cEEEEEeCCCcceEEEEEeCC
Q 040506 225 KFITVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 225 ~~l~i~~~~~~tsev~~~d~~ 245 (365)
++|++... .++++|..
T Consensus 237 ~~lyv~~~-----~v~~~d~~ 252 (328)
T 3dsm_A 237 DTLYWINN-----DIWRMPVE 252 (328)
T ss_dssp CEEEEESS-----SEEEEETT
T ss_pred CEEEEEcc-----EEEEEECC
Confidence 98877532 57777643
No 184
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=46.36 E-value=1.4e+02 Score=25.65 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=23.0
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEEC--CCCcc
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDL--RNQCI 187 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl--~tg~~ 187 (365)
.++++||||+.|.++-+..+ .|+++|+ ++|..
T Consensus 152 ngi~~spdg~~lyv~~~~~~----~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYIDSLSY----SVDAFDYDLQTGQI 185 (297)
T ss_dssp EEEEECTTSCEEEEEEGGGT----EEEEEEECTTTCCE
T ss_pred cceEEcCCCCEEEEecCCCC----cEEEEeccCCCCcc
Confidence 45789999998877765433 5777776 67764
No 185
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=46.30 E-value=1.2e+02 Score=26.84 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=25.1
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
+..++++|+|++|+.+-. +| .|+|+|+.+++.+
T Consensus 294 v~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGW-DG----KLRFWDVKTKERI 326 (397)
T ss_dssp EEEEEECSSSSEEEEEET-TS----EEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEeC-CC----eEEEEEcCCCcee
Confidence 445789999999887643 33 7999999998753
No 186
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=46.09 E-value=1.5e+02 Score=25.87 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=19.5
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
+..+++||+|++||-+-. +| +|+++|+.+
T Consensus 61 v~~v~~sp~~~~las~s~-D~----~v~iw~~~~ 89 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSF-DS----TVSIWAKEE 89 (330)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEEC--
T ss_pred EEEEEECCCCCEEEEEeC-CC----cEEEEEccc
Confidence 445679999998886643 22 588888753
No 187
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=44.34 E-value=45 Score=29.00 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=35.2
Q ss_pred eCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 279 ILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 279 i~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
+|++....-+++...++.|+...-..|.++|+++++.++.
T Consensus 15 ~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgk 54 (243)
T 3mbr_X 15 YPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGR 54 (243)
T ss_dssp EECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCC
T ss_pred cCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCC
Confidence 4788778889999999999999999999999999998764
No 188
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=43.98 E-value=1.4e+02 Score=27.06 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=21.9
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+.++||+++|+.+-. +| .|+++|+.+++.
T Consensus 176 ~~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~ 204 (437)
T 3gre_A 176 AFVNEEKSLLVALTN-LS----RVIIFDIRTLER 204 (437)
T ss_dssp EEECSSCEEEEEEET-TS----EEEEEETTTCCE
T ss_pred EEEcCCCCEEEEEeC-CC----eEEEEeCCCCee
Confidence 347788998887755 23 799999998874
No 189
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=43.17 E-value=64 Score=28.40 Aligned_cols=41 Identities=7% Similarity=-0.029 Sum_probs=35.1
Q ss_pred EeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccc
Q 040506 278 IILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINF 318 (365)
Q Consensus 278 vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~ 318 (365)
-+|++....-+++...++.|+...-.+|.++|+++++.++.
T Consensus 36 ~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgk 76 (262)
T 3nol_A 36 SYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGK 76 (262)
T ss_dssp EEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCC
T ss_pred EecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCc
Confidence 35777777788998888999999999999999999998764
No 190
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=42.59 E-value=2e+02 Score=27.62 Aligned_cols=95 Identities=11% Similarity=0.188 Sum_probs=59.3
Q ss_pred CceEEEeccchhccC-CCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC--------------------
Q 040506 131 GKEEILLDWNEIAEK-YGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP-------------------- 189 (365)
Q Consensus 131 ~~~evllD~n~la~~-~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~-------------------- 189 (365)
+..-+++|...-.+- ..-..-...-..|..+-+|.-- ..+|.|||+++++.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALra------g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA------GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEE------TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEE
T ss_pred CCeEEEEECCCCCcceecccccceeeeCCCCcEEEEec------CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEE
Confidence 345567886542211 0111223345778888888873 3579999999986553
Q ss_pred -----eEEEEECCCCCCCCccEEeeCC---CCeEEEEEEcCCCcEEEEEeC
Q 040506 190 -----RVLCTKLGSDSTDDAPIFTEGD---SGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 190 -----~v~~h~lGt~~~~d~lvf~e~d---~~~~~~~~~s~d~~~l~i~~~ 232 (365)
.||.|.+.. .+..+.+|+... ..--++-..++|++|+++..-
T Consensus 121 lVT~taVyHWsi~~-~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI 170 (494)
T 1bpo_A 121 LVTDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 170 (494)
T ss_dssp EECSSEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEE
T ss_pred EEcCCeeEEecccC-CCCchhheecchhcccceEEEEEECCCCCeEEEEee
Confidence 688888854 335567887532 223355667999999875543
No 191
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=42.02 E-value=95 Score=30.84 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=48.5
Q ss_pred eeEEeCCCCCEEEEEEcCCC----------CeEEEEEEEECCCCccc-C--------eEEEEECCCCCCCCccEE--eeC
Q 040506 152 GTCRVSPDHNFLAYTIDTSG----------DEQFMLQIKDLRNQCIV-P--------RVLCTKLGSDSTDDAPIF--TEG 210 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G----------~e~~~l~v~Dl~tg~~l-~--------~v~~h~lGt~~~~d~lvf--~e~ 210 (365)
..+.+||||+++..+-..+. .+.-.+.|+|..+.+.. + .|-....-+.. ...++. ..+
T Consensus 198 d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~-~~~~~~~Ipvg 276 (595)
T 1fwx_A 198 DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA-SSLFTRYIPIA 276 (595)
T ss_dssp CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG-CCSSEEEEEEE
T ss_pred cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC-CceeEEEEecC
Confidence 45789999998877764331 35567888887654221 1 22222222200 011111 111
Q ss_pred CCCeEEEEEEcCCCcEEEEEeCCCcceEEEEEeCC
Q 040506 211 DSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRC 245 (365)
Q Consensus 211 d~~~~~~~~~s~d~~~l~i~~~~~~tsev~~~d~~ 245 (365)
..+. ++..|+||+|++++ ...++.|.++|..
T Consensus 277 ~~Ph--Gv~~sPDGk~v~V~--~~~s~~VsVid~~ 307 (595)
T 1fwx_A 277 NNPH--GCNMAPDKKHLCVA--GKLSPTVTVLDVT 307 (595)
T ss_dssp SSCC--CEEECTTSSEEEEE--CTTSSBEEEEEGG
T ss_pred CCce--EEEEcCCCCEEEEe--CCCCCeEEEEECc
Confidence 2222 25679999999875 3445677888744
No 192
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=41.31 E-value=1.6e+02 Score=27.10 Aligned_cols=93 Identities=12% Similarity=0.224 Sum_probs=58.0
Q ss_pred eEEEeccchhccC-CCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccC----------------------
Q 040506 133 EEILLDWNEIAEK-YGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP---------------------- 189 (365)
Q Consensus 133 ~evllD~n~la~~-~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~---------------------- 189 (365)
.-+++|.+.-.+- ..-..-...-..|..+-+|.-- | .+|.|+|+++++.+.
T Consensus 50 ~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALra---g---~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lV 123 (365)
T 2xzh_A 50 QVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA---G---KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV 123 (365)
T ss_dssp EEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEE---T---TEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEE
T ss_pred EEEEEECCCCCCccccccccceeeeCCCccEEEEec---C---CeEEEechHHhhhhcceecCCccEEEEecCCCeEEEE
Confidence 3466776542211 0011122344678888888873 3 469999999987653
Q ss_pred ---eEEEEECCCCCCCCccEEeeCC---CCeEEEEEEcCCCcEEEEEeC
Q 040506 190 ---RVLCTKLGSDSTDDAPIFTEGD---SGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 190 ---~v~~h~lGt~~~~d~lvf~e~d---~~~~~~~~~s~d~~~l~i~~~ 232 (365)
.||.|.+.. .+..+.+|+... ..--++-..++|++|+++..-
T Consensus 124 T~taVyHWs~~~-~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI 171 (365)
T 2xzh_A 124 TDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 171 (365)
T ss_dssp ESSEEEEEESST-TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred cCCcEEEEcccC-CCCCceeeecchhcccceEEEEEECCCCCEEEEEeE
Confidence 688888865 335567887532 123355667999999876544
No 193
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=40.87 E-value=1.5e+02 Score=25.54 Aligned_cols=27 Identities=15% Similarity=-0.026 Sum_probs=19.0
Q ss_pred eeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 152 GTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
..+.++| +++++.+-. + ..|+++|+.+
T Consensus 105 ~~l~~~~-~~~l~s~~~-d----~~i~iwd~~~ 131 (342)
T 1yfq_A 105 CRICKYG-DDKLIAASW-D----GLIEVIDPRN 131 (342)
T ss_dssp EEEEEET-TTEEEEEET-T----SEEEEECHHH
T ss_pred EEEEeCC-CCEEEEEcC-C----CeEEEEcccc
Confidence 3456788 887776533 2 3699999987
No 194
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=40.07 E-value=1.3e+02 Score=26.59 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=46.6
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECC---CCCCC------CccEE-eeCCCC------e
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLG---SDSTD------DAPIF-TEGDSG------F 214 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lG---t~~~~------d~lvf-~e~d~~------~ 214 (365)
+..+.++|++.+ +|..+.++.....|.++|+.+|+. ++..-| ..... ...++ ...+.. .
T Consensus 122 ~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~----~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~ 196 (343)
T 2qe8_A 122 VNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLA----ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG 196 (343)
T ss_dssp CCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCE----EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCC
T ss_pred cceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCE----EEEecCCCcccccccceeECCEEEEeccCCCceeceecc
Confidence 345678877664 455565443456799999998863 333222 11100 01111 111111 1
Q ss_pred EEEEEEcCCCcEEEEEeCCCcceEEEEEe
Q 040506 215 CVDITSTKDGKFITVNSNSRASSEEGLCD 243 (365)
Q Consensus 215 ~~~~~~s~d~~~l~i~~~~~~tsev~~~d 243 (365)
--++..|+||++|++....+ ..+|.++
T Consensus 197 ~~gia~s~dg~~ly~~~~~~--~~l~~~~ 223 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHS--TSMYRIK 223 (343)
T ss_dssp EEEEEECTTSCEEEEEESSC--SEEEEEE
T ss_pred cceeEeccCCCEEEEEeCCC--CeEEEEE
Confidence 23577899999988765433 4677776
No 195
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=39.83 E-value=22 Score=32.66 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=17.2
Q ss_pred CCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 159 DHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 159 dg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
||++||=+ ++..+|+|||+.++..
T Consensus 155 d~~~las~-----s~D~tv~~Wd~~~~~~ 178 (393)
T 4gq1_A 155 AEQVIASV-----GDDCTLIIWRLTDEGP 178 (393)
T ss_dssp EEEEEEEE-----ETTSEEEEEEEETTEE
T ss_pred CCCEEEEE-----ECCCeEEEEECCCCce
Confidence 77877744 2344899999988764
No 196
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=38.32 E-value=1.3e+02 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=21.1
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCccc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l 188 (365)
.+.+ |++++||.+-. .| .|+++|+.+++..
T Consensus 23 ~~~~-~~~~~l~s~~~-dg----~v~vw~~~~~~~~ 52 (313)
T 3odt_A 23 DVVA-VDDSKVASVSR-DG----TVRLWSKDDQWLG 52 (313)
T ss_dssp EEEE-EETTEEEEEET-TS----EEEEEEESSSEEE
T ss_pred EEEe-cCCCEEEEEEc-CC----cEEEEECCCCEEE
Confidence 3456 88998876533 33 7999999887653
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=38.08 E-value=1.9e+02 Score=24.80 Aligned_cols=67 Identities=6% Similarity=-0.104 Sum_probs=40.7
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEEeC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSN 232 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~~~ 232 (365)
...++|||+.++ +- + ..++++|. +|+. +|....+... ..-++...+||++++....
T Consensus 41 ~~~~~pdG~ilv-s~----~--~~V~~~d~-~G~~---~W~~~~~~~~-------------~~~~~~~~~dG~~lv~~~~ 96 (276)
T 3no2_A 41 SVAATKAGEILF-SY----S--KGAKMITR-DGRE---LWNIAAPAGC-------------EMQTARILPDGNALVAWCG 96 (276)
T ss_dssp EEEECTTSCEEE-EC----B--SEEEEECT-TSCE---EEEEECCTTC-------------EEEEEEECTTSCEEEEEES
T ss_pred CeEECCCCCEEE-eC----C--CCEEEECC-CCCE---EEEEcCCCCc-------------cccccEECCCCCEEEEecC
Confidence 346899999877 31 1 24899999 8874 6777654210 1123556788888776554
Q ss_pred CCcceEEEEEeCC
Q 040506 233 SRASSEEGLCDRC 245 (365)
Q Consensus 233 ~~~tsev~~~d~~ 245 (365)
. ...++.++.+
T Consensus 97 ~--~~~v~~vd~~ 107 (276)
T 3no2_A 97 H--PSTILEVNMK 107 (276)
T ss_dssp T--TEEEEEECTT
T ss_pred C--CCEEEEEeCC
Confidence 1 2355555544
No 198
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=36.57 E-value=80 Score=29.06 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=19.8
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
...++|+|++++.+- +| .++++|+++|+.
T Consensus 396 ~~~~~~~~~~l~~~~--dg----~i~iwd~~~g~~ 424 (464)
T 3v7d_B 396 ITTFYVSDNILVSGS--EN----QFNIYNLRSGKL 424 (464)
T ss_dssp EEEEEECSSEEEEEE--TT----EEEEEETTTCCE
T ss_pred EEEEEeCCCEEEEec--CC----eEEEEECCCCcE
Confidence 346777888777654 22 588888888764
No 199
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=35.63 E-value=1.7e+02 Score=26.93 Aligned_cols=66 Identities=17% Similarity=0.404 Sum_probs=41.9
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEee-CCCC-eEEEEEEcCCCcEEEEEe
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTE-GDSG-FCVDITSTKDGKFITVNS 231 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e-~d~~-~~~~~~~s~d~~~l~i~~ 231 (365)
+.+|+-.. ++|-+...| -|+++|++||. -+|+.|+..+ .||-. ++.. --+ +...+.|+.+.|+.
T Consensus 265 mqvs~kyg-viyviTK~G----~ihlyDleTgt---~i~~nrIS~d-----~iF~ta~~~~~~Gi-~~Vnr~GqVl~v~v 330 (365)
T 2xzh_A 265 MQISEKHD-VVFLITKYG----YIHLYDLETGT---CIYMNRISGE-----TIFVTAPHEATAGI-IGVNRKGQVLSVCV 330 (365)
T ss_dssp EEEETTTT-EEEEEETTS----EEEEEETTTCC---EEEEEECCSS-----CEEEEEEEGGGTEE-EEEETTCEEEEEEE
T ss_pred EEecccCC-EEEEEeCCc----EEEEEEcccCc---EEEEeccCCC-----ceEEecccCCCCcE-EEEcCCCEEEEEEE
Confidence 45777666 577778777 69999999998 4899999643 35522 1111 111 23457777766666
Q ss_pred CC
Q 040506 232 NS 233 (365)
Q Consensus 232 ~~ 233 (365)
+.
T Consensus 331 ~~ 332 (365)
T 2xzh_A 331 EE 332 (365)
T ss_dssp CT
T ss_pred Cc
Confidence 54
No 200
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=31.35 E-value=1.3e+02 Score=27.34 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=22.3
Q ss_pred EeeEEeCC-CCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 151 VGTCRVSP-DHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 151 ~~~~~~Sp-dg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
+..+++|| ||++||-+-. +| +|+|||+.+
T Consensus 66 V~~~~~s~~~~~~l~s~s~-dg----~v~vwd~~~ 95 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSD-QG----VIKIWNLKE 95 (437)
T ss_dssp EEEEEEECSSSCEEEEEET-TS----EEEEEEHHH
T ss_pred eEEEEECCCCCCEEEEecC-Cc----eEEEeECcc
Confidence 45567999 9998887643 33 799999987
No 201
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=31.06 E-value=2.5e+02 Score=24.06 Aligned_cols=32 Identities=6% Similarity=0.005 Sum_probs=20.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+....++|||++++.. ..+| .|+++|+++|+.
T Consensus 47 ~~~~~~~~~g~l~~~~-~~~~----~i~~~d~~~~~~ 78 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLD-VFEG----NIFKINPETKEI 78 (333)
T ss_dssp EEEEEECTTSCEEEEE-TTTC----EEEEECTTTCCE
T ss_pred ccCcEECCCCCEEEEE-CCCC----EEEEEeCCCCcE
Confidence 3456789999833322 2222 688999998875
No 202
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=30.72 E-value=1.2e+02 Score=26.95 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=21.9
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.++|++..++++-+.+| .|+++|+.+++.
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg----~v~iwd~~~~~~ 200 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSN----FASIWDLKAKKE 200 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSS----CEEEEETTTTEE
T ss_pred eeEEEeCCCCCcEEEEEcCCC----CEEEEECCCCCc
Confidence 445679999544444434344 499999999864
No 203
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=30.47 E-value=2.1e+02 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=21.4
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRN 184 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~t 184 (365)
+..+++||||++||-+-. +| +|+++|+.+
T Consensus 110 V~~v~~sp~g~~las~s~-D~----~v~iwd~~~ 138 (330)
T 2hes_X 110 VKGVAWSNDGYYLATCSR-DK----SVWIWETDE 138 (330)
T ss_dssp EEEEEECTTSCEEEEEET-TS----CEEEEECCT
T ss_pred EEEEEECCCCCEEEEEeC-CC----EEEEEeccC
Confidence 456789999999886533 23 699999953
No 204
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=30.10 E-value=73 Score=32.18 Aligned_cols=31 Identities=10% Similarity=-0.095 Sum_probs=18.4
Q ss_pred ceEeEEEEeC----CEEEEEEecCCeeeEEEEeCCcc
Q 040506 285 ISLQDMDIFD----GHLVLFVSKKGVPMLCSIDLSIN 317 (365)
Q Consensus 285 ~~l~~v~~~~----~~lvl~~~~~g~~~l~v~~l~~~ 317 (365)
..+..+.+.. +.+++....+|. |++|++..+
T Consensus 205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~--I~iwd~~~~ 239 (753)
T 3jro_A 205 DWVRDVAWSPTVLLRSYLASVSQDRT--CIIWTQDNE 239 (753)
T ss_dssp SCEEEEEECCCCSSSEEEEEEESSSC--EEEEEESSS
T ss_pred CcEEEEEeccCCCCCCEEEEEecCCE--EEEecCCCC
Confidence 3466776653 356666666654 667776543
No 205
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.69 E-value=4e+02 Score=26.80 Aligned_cols=89 Identities=9% Similarity=-0.037 Sum_probs=46.6
Q ss_pred CceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEE-CCCCCCCCccEEee
Q 040506 131 GKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTK-LGSDSTDDAPIFTE 209 (365)
Q Consensus 131 ~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~-lGt~~~~d~lvf~e 209 (365)
..+++||-++ .-..+..+.++.+ +|.++...+|. ..|+++|+.+|+.. + +. +. +.+
T Consensus 338 ~~~~~~~~~~------~~~~l~~~~~~~~--~l~~~~~~~~~--~~l~~~~~~~g~~~--~--~~~i~---------lp~ 394 (711)
T 4hvt_A 338 TSLKILFTPT------ANEVFNFISTTKD--RVFLATYDNVV--AKVVTFTLENEQWT--K--PVVLK---------LPY 394 (711)
T ss_dssp TTCEEEECCC------TTEEEEEEEECSS--CEEEEEEETTE--EEEEEECEETTEEC--C--CEEEC---------CCS
T ss_pred ccceEEECCC------CCCeEEEEEEECC--EEEEEEEECCE--EEEEEEECCCCceE--E--EeccC---------CCC
Confidence 3567766543 2235666777766 45555555664 35888898877520 0 01 11 110
Q ss_pred CCCCeEEEEEEcCCCcEEEEEeCCCcc-eEEEEEeC
Q 040506 210 GDSGFCVDITSTKDGKFITVNSNSRAS-SEEGLCDR 244 (365)
Q Consensus 210 ~d~~~~~~~~~s~d~~~l~i~~~~~~t-sev~~~d~ 244 (365)
..... ....++++..+++..++..+ .++|.++.
T Consensus 395 -~~~~~-~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 395 -QNAIF-GMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp -TTCEE-EEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred -CeEEE-EEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 11111 13345666666555555444 77887764
No 206
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=29.29 E-value=1.1e+02 Score=29.68 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=33.5
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEEEEcCCCcEEEEE
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN 230 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~~~s~d~~~l~i~ 230 (365)
.+++||+++.+|.+-+ ..+++++|+.++..+.. +..-. ..-..+..+++|++|+..
T Consensus 360 ~v~fsp~~~~l~s~~~-----d~tv~lwd~~~~~~~~~----------------l~gH~-~~V~sva~Sp~g~~l~Sg 415 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDG-----ASSLRAVPSRAAFAVHP----------------LVSRE-TTITAIGVSRLHPMVLAG 415 (524)
T ss_dssp CEEEETTTTEEEEECS-----SSEEEEEETTCTTCCEE----------------EEECS-SCEEEEECCSSCCBCEEE
T ss_pred ceEeCCCcCeEEEeCC-----CCcEEEEECccccccee----------------eecCC-CceEEEEeCCCCCeEEEE
Confidence 4678999998765421 22699999988764211 11111 122346678888876543
No 207
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.07 E-value=2.5e+02 Score=26.99 Aligned_cols=67 Identities=16% Similarity=0.400 Sum_probs=42.2
Q ss_pred EEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEee-CCCC-eEEEEEEcCCCcEEEEEe
Q 040506 154 CRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTE-GDSG-FCVDITSTKDGKFITVNS 231 (365)
Q Consensus 154 ~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e-~d~~-~~~~~~~s~d~~~l~i~~ 231 (365)
+.+|+... +.|-+...| -|+++|++||. -+|+.|+..+ .||-. ++.. --+ +...+.|+.+.|+.
T Consensus 264 mqvs~kyg-viyviTK~G----~i~lyDleTgt---~i~~nrIs~~-----~iF~t~~~~~~~Gi-~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 264 MQISEKHD-VVFLITKYG----YIHLYDLETGT---CIYMNRISGE-----TIFVTAPHEATAGI-IGVNRKGQVLSVCV 329 (494)
T ss_dssp EEEETTTT-EEEEEETTS----EEEEEETTTCC---EEEEEECCSS-----CEEEEEEETTTTEE-EEEETTCEEEEEEE
T ss_pred EEecccCC-EEEEEecCc----eEEEEecccce---eeeeecccCC-----ceEEecccCCCCcE-EEEccCceEEEEEE
Confidence 46777766 467777777 69999999998 4899998543 34522 1111 111 23457777776666
Q ss_pred CCC
Q 040506 232 NSR 234 (365)
Q Consensus 232 ~~~ 234 (365)
+..
T Consensus 330 ~e~ 332 (494)
T 1bpo_A 330 EEE 332 (494)
T ss_dssp CTT
T ss_pred ccc
Confidence 553
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.28 E-value=2.4e+02 Score=25.83 Aligned_cols=33 Identities=0% Similarity=0.024 Sum_probs=22.4
Q ss_pred EEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 150 HVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 150 ~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
....++++|+|+ +|..+..+. .|+++|+++|..
T Consensus 132 ~P~~la~d~~g~--lyv~d~~~~---~I~~id~~~g~~ 164 (409)
T 3hrp_A 132 YMWGIAAVGNNT--VLAYQRDDP---RVRLISVDDNKV 164 (409)
T ss_dssp CEEEEEECSTTE--EEEEETTTT---EEEEEETTTTEE
T ss_pred CceEEEEeCCCC--EEEEecCCC---cEEEEECCCCEE
Confidence 445677889988 444454322 588999988864
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=26.91 E-value=2.9e+02 Score=24.06 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=21.3
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.++|||++++.+ .. .|+++|+.+|++
T Consensus 92 v~~i~~~~dg~l~v~~--~~-----gl~~~d~~~g~~ 121 (326)
T 2ghs_A 92 GSALAKISDSKQLIAS--DD-----GLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEEETTEEEEEE--TT-----EEEEEETTTCCE
T ss_pred ceEEEEeCCCeEEEEE--CC-----CEEEEECCCCcE
Confidence 4455688999876654 22 288999999875
No 210
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=26.74 E-value=1.5e+02 Score=28.28 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=46.0
Q ss_pred EeccchhccCCCeEEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeE
Q 040506 136 LLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFC 215 (365)
Q Consensus 136 llD~n~la~~~~~~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~ 215 (365)
.+.+.++.+..|+...-.+.++|||=++...=+..|.-.-.+.++|.+|++.+ -++..|... ..+-
T Consensus 125 ~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~---~~~~~~~~~-----------~~~~ 190 (462)
T 2ece_A 125 VIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPL---GKWEIDRGD-----------QYLA 190 (462)
T ss_dssp EECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEE---EECCSBCTT-----------CCCC
T ss_pred eechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEE---EEEccCCCC-----------cccc
Confidence 35555665434555556678999992222222233555567999999999862 333333211 1122
Q ss_pred EEEEEcCCCcEEEEE
Q 040506 216 VDITSTKDGKFITVN 230 (365)
Q Consensus 216 ~~~~~s~d~~~l~i~ 230 (365)
.+++.++++++++.+
T Consensus 191 Yd~~~~p~~~~mvsS 205 (462)
T 2ece_A 191 YDFWWNLPNEVLVSS 205 (462)
T ss_dssp CCEEEETTTTEEEEC
T ss_pred ceEEECCCCCEEEEc
Confidence 235568888866554
No 211
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=25.36 E-value=2.4e+02 Score=27.93 Aligned_cols=70 Identities=10% Similarity=-0.035 Sum_probs=39.8
Q ss_pred CeEEEeeEEeCCCCCEEEEEEcCCCC--------eEEEEEEEECCCCcccCeEEEEECCCCCCCCccEEeeCCCCeEEEE
Q 040506 147 GYVHVGTCRVSPDHNFLAYTIDTSGD--------EQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDI 218 (365)
Q Consensus 147 ~~~~~~~~~~Spdg~~la~~~d~~G~--------e~~~l~v~Dl~tg~~l~~v~~h~lGt~~~~d~lvf~e~d~~~~~~~ 218 (365)
.+-+...+.++++|.+ -++.|.+-+ -...++..|..+|+. .++...+...-..++
T Consensus 474 ~fnsPDnL~fd~~G~L-Wf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel----------------~~fl~~P~~aEpnGi 536 (592)
T 4a9v_A 474 MFNSPDGLGFDKAGRL-WILTDGDSSNAGDFAGMGNNQMLCADPATGEI----------------RRFMVGPIGCEVTGI 536 (592)
T ss_dssp CCCCEEEEEECTTCCE-EEEECCCCCCSGGGTTCCSCEEEEECTTTCCE----------------EEEEECCTTCEEEEE
T ss_pred ccCCCCceEECCCCCE-EEEeCCCcCccccccccCCceEEEEeCCCCeE----------------EEEEeCCCCccccCC
Confidence 4667778889999864 344553311 011233333333332 234443333345678
Q ss_pred EEcCCCcEEEEEeCC
Q 040506 219 TSTKDGKFITVNSNS 233 (365)
Q Consensus 219 ~~s~d~~~l~i~~~~ 233 (365)
..|+|+++|+|++..
T Consensus 537 afSPD~ktLfV~vQH 551 (592)
T 4a9v_A 537 SFSPDQKTLFVGIQH 551 (592)
T ss_dssp EECTTSSEEEEEEES
T ss_pred EECCCCCEEEEEEeC
Confidence 899999999998744
No 212
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=25.12 E-value=4.5e+02 Score=25.04 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=19.6
Q ss_pred eeEEeCCC------CCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 152 GTCRVSPD------HNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 152 ~~~~~Spd------g~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
-.++++|+ +++||-+-. .| +|+++|+.++.
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~-Dg----tvrlWd~~~~~ 246 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQ-EG----TINFLEIIDNA 246 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEET-TS----CEEEEECCCCS
T ss_pred EEEEECCCCCCCCCCceEEEEec-CC----eEEEEEcCCCc
Confidence 34567876 567665433 33 69999998763
No 213
>2kyw_A Adhesion exoprotein; structural genomics, northeast structural genomics consortiu GFT, PSI-2, protein structure initiative; NMR {Pediococcus pentosaceus}
Probab=24.15 E-value=1e+02 Score=21.40 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=26.5
Q ss_pred EEEeeEEeCCCCCEEEEEEcCCCCeEEEEEEEE
Q 040506 149 VHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKD 181 (365)
Q Consensus 149 ~~~~~~~~Spdg~~la~~~d~~G~e~~~l~v~D 181 (365)
+.-.+-.+|.||+.+.+++....++...|+++-
T Consensus 46 Vggd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (87)
T 2kyw_A 46 VGTDGGVVSSDGKTVTITFAADDSDNVVIHLKH 78 (87)
T ss_dssp EEEESSEECTTSSEEEEECCSSSCCCEEEEEEE
T ss_pred EcCCCCEEecCCCEEEEEEeecCCCCEEEEeec
Confidence 333344699999999999999999998888764
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=23.38 E-value=3e+02 Score=23.56 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=22.4
Q ss_pred eeEEeCCCCCEEEEEEcCCC-CeEEEEEEEECCCCc
Q 040506 152 GTCRVSPDHNFLAYTIDTSG-DEQFMLQIKDLRNQC 186 (365)
Q Consensus 152 ~~~~~Spdg~~la~~~d~~G-~e~~~l~v~Dl~tg~ 186 (365)
.++++||||+.|.++-+..+ .....|+++|+.++.
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 35689999998877654320 012368888887654
No 215
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=23.26 E-value=4.1e+02 Score=26.50 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=23.9
Q ss_pred EeeEEeCCC--CCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPD--HNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spd--g~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.++|+ |++++.+-. +| .|+++|+.++..
T Consensus 102 V~~v~~sp~~~~~~l~sgs~-dg----~I~vwdl~~~~~ 135 (753)
T 3jro_A 102 VNSVQWAPHEYGPLLLVASS-DG----KVSVVEFKENGT 135 (753)
T ss_dssp EEEEEECCGGGCSEEEEEET-TS----EEEEEECCSSSC
T ss_pred eEEEEECCCCCCCEEEEEeC-CC----cEEEEEeecCCC
Confidence 445678999 888887744 33 799999988743
No 216
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=22.71 E-value=3.6e+02 Score=23.02 Aligned_cols=36 Identities=3% Similarity=-0.021 Sum_probs=23.7
Q ss_pred EeeEEeCCCCCEEEEEEcCCCCeEEEEEEEECCCCcc
Q 040506 151 VGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI 187 (365)
Q Consensus 151 ~~~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~tg~~ 187 (365)
+..+.++|||++++.+.. ++.+...|+++|+++++.
T Consensus 89 ~~~i~~~~dg~l~v~~~~-~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 89 PAAIKIHKDGRLFVCYLG-DFKSTGGIFAATENGDNL 124 (333)
T ss_dssp EEEEEECTTSCEEEEECT-TSSSCCEEEEECTTSCSC
T ss_pred cceEEECCCCcEEEEeCC-CCCCCceEEEEeCCCCEE
Confidence 445678999986655433 222334688899988764
No 217
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=22.65 E-value=2.9e+02 Score=25.51 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=20.7
Q ss_pred EeeEEeCCC-CCEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPD-HNFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spd-g~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+..++++|+ +++||-+-. +| +|++||+.++.
T Consensus 152 V~~v~~~p~~~~~las~s~-Dg----~v~iwD~~~~~ 183 (434)
T 2oit_A 152 VIDMKWNPTVPSMVAVCLA-DG----SIAVLQVTETV 183 (434)
T ss_dssp EEEEEECSSCTTEEEEEET-TS----CEEEEEESSSE
T ss_pred eEEEEECCCCCCEEEEEEC-CC----eEEEEEcCCCc
Confidence 445678888 566665433 44 48889988874
No 218
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=22.13 E-value=3.6e+02 Score=22.80 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=19.9
Q ss_pred EeeEEeCCCC---CEEEEEEcCCCCeEEEEEEEECCCCc
Q 040506 151 VGTCRVSPDH---NFLAYTIDTSGDEQFMLQIKDLRNQC 186 (365)
Q Consensus 151 ~~~~~~Spdg---~~la~~~d~~G~e~~~l~v~Dl~tg~ 186 (365)
+..+++||++ ++||-+ +.+| +|+++|+.++.
T Consensus 207 V~~v~~sp~~~~~~~las~-s~D~----~v~iWd~~~~~ 240 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASV-SQDR----TCIIWTQDNEQ 240 (297)
T ss_dssp EEEEEECCCCSSSEEEEEE-ETTS----CEEEEEESSTT
T ss_pred eEEEEECCCCCCceEEEEE-ECCC----cEEEEEeCCCC
Confidence 4456789985 555533 3233 68999987753
No 219
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=21.69 E-value=76 Score=20.86 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=18.6
Q ss_pred CCeEEEEEccCCCccceEEEec
Q 040506 90 GPWLYYQYIPEGKEYPLLCRRL 111 (365)
Q Consensus 90 g~~~Y~~~~~~~~~~~i~~R~~ 111 (365)
|.-+|.+++.+...-.++|||+
T Consensus 26 gh~F~vF~n~~t~~~nVvYrR~ 47 (57)
T 3k2t_A 26 GHSFYVYTDAETNGTNIVYSRK 47 (57)
T ss_dssp TCSEEEEEBSSSCCEEEEEECT
T ss_pred CCcEEEEEcCCCCCEEEEEEeC
Confidence 6668888899988889999985
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=20.73 E-value=4.2e+02 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.004 Sum_probs=17.5
Q ss_pred eEEeCCCCCEEEEEEcCCCCeEEEEEEEECC--CC
Q 040506 153 TCRVSPDHNFLAYTIDTSGDEQFMLQIKDLR--NQ 185 (365)
Q Consensus 153 ~~~~Spdg~~la~~~d~~G~e~~~l~v~Dl~--tg 185 (365)
.+++||||+.+.++-+.. ..|+++|+. +|
T Consensus 183 ~i~~s~dg~~lyv~~~~~----~~I~~~d~~~~~G 213 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTKV----NRLMRVPLDARTG 213 (326)
T ss_dssp EEEECTTSCEEEEEETTT----CEEEEEEBCTTTC
T ss_pred CeEEcCCCCEEEEEECCC----CEEEEEEcccccC
Confidence 456777777776654322 256677764 55
Done!