BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>040509
MKGIVGAIRSIQESSTKFWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV
VPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILLPFKQEVIPGTSPSALE
TTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLSEATFDVLRWLKFLRFYEKR
KMILCLNKVVANLAEFEKKDHGANATDFLIIVASIVEVSSFEAVYA

High Scoring Gene Products

Symbol, full name Information P value
AT1G31410 protein from Arabidopsis thaliana 2.4e-35

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040509
        (226 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2206194 - symbol:AT1G31410 species:3702 "Arabi...   382  2.4e-35   1


>TAIR|locus:2206194 [details] [associations]
            symbol:AT1G31410 species:3702 "Arabidopsis thaliana"
            [GO:0005215 "transporter activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006810 "transport" evidence=IEA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001188
            PRINTS:PR00909 EMBL:CP002684 GO:GO:0009941 GO:GO:0042597
            eggNOG:COG0687 GO:GO:0019808 GO:GO:0015846 EMBL:BT015412
            IPI:IPI00520881 RefSeq:NP_174426.2 UniGene:At.40347
            ProteinModelPortal:Q66GJ0 PaxDb:Q66GJ0 PRIDE:Q66GJ0
            EnsemblPlants:AT1G31410.1 GeneID:840031 KEGG:ath:AT1G31410
            TAIR:At1g31410 InParanoid:Q66GJ0 OMA:GTMVIAY PhylomeDB:Q66GJ0
            ProtClustDB:CLSN2680340 Genevestigator:Q66GJ0 Uniprot:Q66GJ0
        Length = 524

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 82/154 (53%), Positives = 100/154 (64%)

Query:    30 EAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAAS---------- 79
             +AF + DVWV VGWSSDV+P  KRMSNV V+VPKSGA+LWADLWAIPA S          
Sbjct:   334 KAFNVGDVWVTVGWSSDVIPVAKRMSNVTVIVPKSGATLWADLWAIPAVSDSGKEAEQRG 393

Query:    80 -RLHKTNWRASQW-SISIDPSMDRILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSL 137
              R+   +   +QW    + P+     LPF +EVIPG SPSAL+  LV  PE+  K +  L
Sbjct:   394 GRVRGPSPLINQWIEFCLQPARS---LPFTREVIPGASPSALDGPLVTEPEKTKKDRTKL 450

Query:   138 GTDLIAGVPPAEILARCEFLEPLSEATFDVLRWL 171
              T+L+ GVPP EIL++CEFLEPL EAT    R L
Sbjct:   451 DTNLVTGVPPPEILSKCEFLEPLPEATLSEYRLL 484


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      226       226   0.00078  113 3  11 22  0.38    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  188 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.72u 0.12s 18.84t   Elapsed:  00:00:01
  Total cpu time:  18.72u 0.12s 18.84t   Elapsed:  00:00:01
  Start:  Mon May 20 21:10:13 2013   End:  Mon May 20 21:10:14 2013

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