BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040509
         (226 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain
           K12) GN=potF PE=1 SV=3
          Length = 370

 Score = 37.0 bits (84), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 6/51 (11%)

Query: 36  DVWVAVGWSSDVLPAVKRMS------NVAVVVPKSGASLWADLWAIPAASR 80
           D+ VA+GW+ DV  A  R        NV+  +PK GA  + D++A+PA ++
Sbjct: 237 DICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK 287


>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus
           influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
           GN=potD-A PE=3 SV=2
          Length = 350

 Score = 33.5 bits (75), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 39  VAVG--WSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 80
           VA+G  W+     A K   ++  V PK GA  W D +AIP  ++
Sbjct: 226 VAIGMIWNGSAYLAQKENQSLQFVYPKEGAIFWMDNYAIPTTAK 269


>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus
           influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
           GN=potD-B PE=3 SV=1
          Length = 360

 Score = 32.3 bits (72), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 29  SEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 80
           + +F   +V V   W+  V  A K  + + +V PK G  LW D  AIPA ++
Sbjct: 227 ANSFISGEVEVGQLWNGSVRIAKKEKAPLNMVFPKEGPVLWVDTLAIPATAK 278


>sp|P87024|SKN1_CANAX Beta-glucan synthesis-associated protein SKN1 OS=Candida albicans
           GN=SKN1 PE=2 SV=1
          Length = 737

 Score = 31.6 bits (70), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 32  FGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIP 76
           FGI + W  + W S V P+  R+  V V  PK   ++  D    P
Sbjct: 658 FGISNNWAYIDWPSLVFPSTMRVDYVRVYQPKDQINVGCDPTDFP 702


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,560,779
Number of Sequences: 539616
Number of extensions: 3164598
Number of successful extensions: 7173
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7168
Number of HSP's gapped (non-prelim): 9
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)